Multiple sequence alignment - TraesCS3D01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G320800 chr3D 100.000 2222 0 0 1 2222 433747023 433749244 0.000000e+00 4104.0
1 TraesCS3D01G320800 chr3D 85.507 207 26 4 1 204 428958430 428958635 1.730000e-51 213.0
2 TraesCS3D01G320800 chr3D 90.476 84 8 0 1140 1223 433816875 433816958 6.490000e-21 111.0
3 TraesCS3D01G320800 chr3B 85.748 1256 78 40 285 1504 566985936 566987126 0.000000e+00 1234.0
4 TraesCS3D01G320800 chr3B 89.983 589 39 9 1648 2222 566987736 566988318 0.000000e+00 743.0
5 TraesCS3D01G320800 chr3B 87.912 182 20 1 1 182 765840026 765839847 1.730000e-51 213.0
6 TraesCS3D01G320800 chr3B 95.238 42 2 0 1517 1558 566987397 566987438 1.420000e-07 67.6
7 TraesCS3D01G320800 chr3A 91.393 883 51 14 694 1558 572340606 572341481 0.000000e+00 1186.0
8 TraesCS3D01G320800 chr3A 90.940 585 39 11 1648 2222 572341616 572342196 0.000000e+00 774.0
9 TraesCS3D01G320800 chr3A 90.323 279 17 4 420 698 572335077 572335345 7.550000e-95 357.0
10 TraesCS3D01G320800 chr3A 76.481 574 80 27 1669 2206 657216972 657216418 6.090000e-66 261.0
11 TraesCS3D01G320800 chr2A 82.843 408 49 14 1715 2111 474250679 474250282 1.630000e-91 346.0
12 TraesCS3D01G320800 chr2A 87.245 196 21 3 1 196 6106467 6106658 1.030000e-53 220.0
13 TraesCS3D01G320800 chr2A 87.245 196 21 3 1 196 6158182 6158373 1.030000e-53 220.0
14 TraesCS3D01G320800 chr2A 84.694 98 13 2 1672 1768 491539099 491539003 1.820000e-16 97.1
15 TraesCS3D01G320800 chr2B 81.481 432 57 14 1690 2109 421697278 421696858 1.270000e-87 333.0
16 TraesCS3D01G320800 chr2B 86.335 161 19 3 1868 2026 433108781 433108622 2.930000e-39 172.0
17 TraesCS3D01G320800 chr2B 74.479 192 29 8 1827 2018 575906539 575906710 5.120000e-07 65.8
18 TraesCS3D01G320800 chr4D 80.672 357 57 8 1672 2023 432738844 432739193 1.310000e-67 267.0
19 TraesCS3D01G320800 chr4D 78.571 406 48 20 1837 2206 6832420 6832018 4.770000e-57 231.0
20 TraesCS3D01G320800 chr1D 86.957 207 23 4 1 204 474970274 474970479 1.720000e-56 230.0
21 TraesCS3D01G320800 chr7D 86.735 196 24 2 1 196 489723712 489723519 1.340000e-52 217.0
22 TraesCS3D01G320800 chr7D 77.955 313 57 8 1695 2003 433805047 433804743 3.770000e-43 185.0
23 TraesCS3D01G320800 chr5B 86.735 196 23 3 1 196 563165533 563165725 4.810000e-52 215.0
24 TraesCS3D01G320800 chr4B 86.735 196 22 3 1 196 50839130 50838939 4.810000e-52 215.0
25 TraesCS3D01G320800 chr4B 82.353 136 16 6 1894 2022 41202875 41202741 6.490000e-21 111.0
26 TraesCS3D01G320800 chr7B 86.667 195 23 3 2 196 428922173 428922364 1.730000e-51 213.0
27 TraesCS3D01G320800 chr2D 83.088 136 20 3 1670 1804 364983247 364983114 1.080000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G320800 chr3D 433747023 433749244 2221 False 4104.000000 4104 100.0000 1 2222 1 chr3D.!!$F2 2221
1 TraesCS3D01G320800 chr3B 566985936 566988318 2382 False 681.533333 1234 90.3230 285 2222 3 chr3B.!!$F1 1937
2 TraesCS3D01G320800 chr3A 572340606 572342196 1590 False 980.000000 1186 91.1665 694 2222 2 chr3A.!!$F2 1528
3 TraesCS3D01G320800 chr3A 657216418 657216972 554 True 261.000000 261 76.4810 1669 2206 1 chr3A.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.034896 AACCGTTGAGATGGCGTTCT 59.965 50.0 0.0 0.0 35.16 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1459 0.322816 ATGAACGGCTGCATCCACTT 60.323 50.0 7.47 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.546407 GTCGAGTGACGTCTGTGTT 57.454 52.632 17.92 0.00 43.13 3.32
21 22 1.836383 GTCGAGTGACGTCTGTGTTT 58.164 50.000 17.92 0.00 43.13 2.83
22 23 2.190981 GTCGAGTGACGTCTGTGTTTT 58.809 47.619 17.92 0.00 43.13 2.43
23 24 2.601763 GTCGAGTGACGTCTGTGTTTTT 59.398 45.455 17.92 0.00 43.13 1.94
45 46 3.383620 TTTTTGCTACAAGTGGCATGG 57.616 42.857 12.02 0.00 46.28 3.66
46 47 1.993956 TTTGCTACAAGTGGCATGGT 58.006 45.000 12.02 0.00 46.28 3.55
47 48 1.993956 TTGCTACAAGTGGCATGGTT 58.006 45.000 12.02 0.00 46.28 3.67
48 49 1.246649 TGCTACAAGTGGCATGGTTG 58.753 50.000 7.17 0.00 42.20 3.77
49 50 0.527565 GCTACAAGTGGCATGGTTGG 59.472 55.000 3.54 0.00 37.02 3.77
50 51 1.886222 GCTACAAGTGGCATGGTTGGA 60.886 52.381 3.54 2.97 37.02 3.53
51 52 2.726821 CTACAAGTGGCATGGTTGGAT 58.273 47.619 10.68 0.00 0.00 3.41
52 53 1.259609 ACAAGTGGCATGGTTGGATG 58.740 50.000 10.68 0.00 0.00 3.51
53 54 0.108520 CAAGTGGCATGGTTGGATGC 60.109 55.000 0.00 0.00 46.82 3.91
54 55 0.251922 AAGTGGCATGGTTGGATGCT 60.252 50.000 0.00 0.00 46.74 3.79
55 56 0.625316 AGTGGCATGGTTGGATGCTA 59.375 50.000 0.00 0.00 46.74 3.49
56 57 1.027357 GTGGCATGGTTGGATGCTAG 58.973 55.000 0.00 0.00 46.74 3.42
57 58 0.918258 TGGCATGGTTGGATGCTAGA 59.082 50.000 0.00 0.00 46.74 2.43
58 59 1.284491 TGGCATGGTTGGATGCTAGAA 59.716 47.619 0.00 0.00 46.74 2.10
59 60 2.291475 TGGCATGGTTGGATGCTAGAAA 60.291 45.455 0.00 0.00 46.74 2.52
60 61 2.099756 GGCATGGTTGGATGCTAGAAAC 59.900 50.000 0.00 0.00 46.74 2.78
61 62 2.223340 GCATGGTTGGATGCTAGAAACG 60.223 50.000 0.00 0.00 44.57 3.60
62 63 2.107950 TGGTTGGATGCTAGAAACGG 57.892 50.000 0.00 0.00 0.00 4.44
63 64 1.349688 TGGTTGGATGCTAGAAACGGT 59.650 47.619 0.00 0.00 0.00 4.83
64 65 1.737793 GGTTGGATGCTAGAAACGGTG 59.262 52.381 0.00 0.00 0.00 4.94
65 66 2.614481 GGTTGGATGCTAGAAACGGTGA 60.614 50.000 0.00 0.00 0.00 4.02
66 67 3.270877 GTTGGATGCTAGAAACGGTGAT 58.729 45.455 0.00 0.00 0.00 3.06
67 68 2.905075 TGGATGCTAGAAACGGTGATG 58.095 47.619 0.00 0.00 0.00 3.07
68 69 2.499693 TGGATGCTAGAAACGGTGATGA 59.500 45.455 0.00 0.00 0.00 2.92
69 70 3.055458 TGGATGCTAGAAACGGTGATGAA 60.055 43.478 0.00 0.00 0.00 2.57
70 71 3.938963 GGATGCTAGAAACGGTGATGAAA 59.061 43.478 0.00 0.00 0.00 2.69
71 72 4.394920 GGATGCTAGAAACGGTGATGAAAA 59.605 41.667 0.00 0.00 0.00 2.29
72 73 5.106317 GGATGCTAGAAACGGTGATGAAAAA 60.106 40.000 0.00 0.00 0.00 1.94
73 74 5.957842 TGCTAGAAACGGTGATGAAAAAT 57.042 34.783 0.00 0.00 0.00 1.82
74 75 5.698832 TGCTAGAAACGGTGATGAAAAATG 58.301 37.500 0.00 0.00 0.00 2.32
75 76 5.240623 TGCTAGAAACGGTGATGAAAAATGT 59.759 36.000 0.00 0.00 0.00 2.71
76 77 6.149633 GCTAGAAACGGTGATGAAAAATGTT 58.850 36.000 0.00 0.00 0.00 2.71
77 78 6.088085 GCTAGAAACGGTGATGAAAAATGTTG 59.912 38.462 0.00 0.00 0.00 3.33
78 79 5.901552 AGAAACGGTGATGAAAAATGTTGT 58.098 33.333 0.00 0.00 0.00 3.32
79 80 5.748152 AGAAACGGTGATGAAAAATGTTGTG 59.252 36.000 0.00 0.00 0.00 3.33
80 81 4.909696 ACGGTGATGAAAAATGTTGTGA 57.090 36.364 0.00 0.00 0.00 3.58
81 82 5.452078 ACGGTGATGAAAAATGTTGTGAT 57.548 34.783 0.00 0.00 0.00 3.06
82 83 5.221880 ACGGTGATGAAAAATGTTGTGATG 58.778 37.500 0.00 0.00 0.00 3.07
83 84 4.622313 CGGTGATGAAAAATGTTGTGATGG 59.378 41.667 0.00 0.00 0.00 3.51
84 85 5.540911 GGTGATGAAAAATGTTGTGATGGT 58.459 37.500 0.00 0.00 0.00 3.55
85 86 6.569418 CGGTGATGAAAAATGTTGTGATGGTA 60.569 38.462 0.00 0.00 0.00 3.25
86 87 7.322664 GGTGATGAAAAATGTTGTGATGGTAT 58.677 34.615 0.00 0.00 0.00 2.73
87 88 7.818930 GGTGATGAAAAATGTTGTGATGGTATT 59.181 33.333 0.00 0.00 0.00 1.89
88 89 8.649841 GTGATGAAAAATGTTGTGATGGTATTG 58.350 33.333 0.00 0.00 0.00 1.90
89 90 7.331440 TGATGAAAAATGTTGTGATGGTATTGC 59.669 33.333 0.00 0.00 0.00 3.56
90 91 6.519382 TGAAAAATGTTGTGATGGTATTGCA 58.481 32.000 0.00 0.00 0.00 4.08
91 92 6.645827 TGAAAAATGTTGTGATGGTATTGCAG 59.354 34.615 0.00 0.00 0.00 4.41
92 93 4.724074 AATGTTGTGATGGTATTGCAGG 57.276 40.909 0.00 0.00 0.00 4.85
93 94 1.818060 TGTTGTGATGGTATTGCAGGC 59.182 47.619 0.00 0.00 0.00 4.85
94 95 1.818060 GTTGTGATGGTATTGCAGGCA 59.182 47.619 0.00 0.00 0.00 4.75
95 96 2.212812 TGTGATGGTATTGCAGGCAA 57.787 45.000 9.38 9.38 40.47 4.52
96 97 2.093890 TGTGATGGTATTGCAGGCAAG 58.906 47.619 12.66 0.00 39.47 4.01
97 98 2.290832 TGTGATGGTATTGCAGGCAAGA 60.291 45.455 12.66 4.96 39.47 3.02
98 99 2.754552 GTGATGGTATTGCAGGCAAGAA 59.245 45.455 12.66 0.57 39.47 2.52
99 100 2.754552 TGATGGTATTGCAGGCAAGAAC 59.245 45.455 12.66 11.11 39.47 3.01
100 101 2.284754 TGGTATTGCAGGCAAGAACA 57.715 45.000 14.69 14.69 41.72 3.18
101 102 2.591923 TGGTATTGCAGGCAAGAACAA 58.408 42.857 16.13 6.15 41.14 2.83
102 103 3.164268 TGGTATTGCAGGCAAGAACAAT 58.836 40.909 16.13 0.00 41.14 2.71
103 104 4.339748 TGGTATTGCAGGCAAGAACAATA 58.660 39.130 16.13 0.00 41.14 1.90
104 105 4.769488 TGGTATTGCAGGCAAGAACAATAA 59.231 37.500 16.13 0.00 41.14 1.40
105 106 5.244851 TGGTATTGCAGGCAAGAACAATAAA 59.755 36.000 16.13 0.00 41.14 1.40
106 107 6.070881 TGGTATTGCAGGCAAGAACAATAAAT 60.071 34.615 16.13 0.00 41.14 1.40
107 108 6.818142 GGTATTGCAGGCAAGAACAATAAATT 59.182 34.615 11.45 0.00 39.47 1.82
108 109 6.973229 ATTGCAGGCAAGAACAATAAATTC 57.027 33.333 12.66 0.00 39.47 2.17
109 110 5.726980 TGCAGGCAAGAACAATAAATTCT 57.273 34.783 0.00 0.00 38.05 2.40
110 111 6.832520 TGCAGGCAAGAACAATAAATTCTA 57.167 33.333 0.00 0.00 35.31 2.10
111 112 6.620678 TGCAGGCAAGAACAATAAATTCTAC 58.379 36.000 0.00 0.00 35.31 2.59
112 113 6.208402 TGCAGGCAAGAACAATAAATTCTACA 59.792 34.615 0.00 0.00 35.31 2.74
113 114 7.090173 GCAGGCAAGAACAATAAATTCTACAA 58.910 34.615 0.00 0.00 35.31 2.41
114 115 7.062255 GCAGGCAAGAACAATAAATTCTACAAC 59.938 37.037 0.00 0.00 35.31 3.32
115 116 7.542130 CAGGCAAGAACAATAAATTCTACAACC 59.458 37.037 0.00 0.00 35.31 3.77
116 117 6.526674 GGCAAGAACAATAAATTCTACAACCG 59.473 38.462 0.00 0.00 35.31 4.44
117 118 7.081976 GCAAGAACAATAAATTCTACAACCGT 58.918 34.615 0.00 0.00 35.31 4.83
118 119 7.593644 GCAAGAACAATAAATTCTACAACCGTT 59.406 33.333 0.00 0.00 35.31 4.44
119 120 9.113876 CAAGAACAATAAATTCTACAACCGTTC 57.886 33.333 0.00 0.00 35.31 3.95
120 121 8.617290 AGAACAATAAATTCTACAACCGTTCT 57.383 30.769 0.00 0.00 34.59 3.01
121 122 9.715121 AGAACAATAAATTCTACAACCGTTCTA 57.285 29.630 0.00 0.00 38.00 2.10
124 125 9.498176 ACAATAAATTCTACAACCGTTCTAACT 57.502 29.630 0.00 0.00 0.00 2.24
131 132 7.355332 TCTACAACCGTTCTAACTAAAATGC 57.645 36.000 0.00 0.00 0.00 3.56
132 133 7.156673 TCTACAACCGTTCTAACTAAAATGCT 58.843 34.615 0.00 0.00 0.00 3.79
133 134 8.306038 TCTACAACCGTTCTAACTAAAATGCTA 58.694 33.333 0.00 0.00 0.00 3.49
134 135 7.125536 ACAACCGTTCTAACTAAAATGCTAC 57.874 36.000 0.00 0.00 0.00 3.58
135 136 6.707161 ACAACCGTTCTAACTAAAATGCTACA 59.293 34.615 0.00 0.00 0.00 2.74
136 137 7.227116 ACAACCGTTCTAACTAAAATGCTACAA 59.773 33.333 0.00 0.00 0.00 2.41
137 138 7.125536 ACCGTTCTAACTAAAATGCTACAAC 57.874 36.000 0.00 0.00 0.00 3.32
138 139 6.148315 ACCGTTCTAACTAAAATGCTACAACC 59.852 38.462 0.00 0.00 0.00 3.77
139 140 6.238508 CGTTCTAACTAAAATGCTACAACCG 58.761 40.000 0.00 0.00 0.00 4.44
140 141 6.128742 CGTTCTAACTAAAATGCTACAACCGT 60.129 38.462 0.00 0.00 0.00 4.83
141 142 6.956299 TCTAACTAAAATGCTACAACCGTC 57.044 37.500 0.00 0.00 0.00 4.79
142 143 6.457355 TCTAACTAAAATGCTACAACCGTCA 58.543 36.000 0.00 0.00 0.00 4.35
143 144 6.930164 TCTAACTAAAATGCTACAACCGTCAA 59.070 34.615 0.00 0.00 0.00 3.18
144 145 6.569179 AACTAAAATGCTACAACCGTCAAT 57.431 33.333 0.00 0.00 0.00 2.57
145 146 5.938322 ACTAAAATGCTACAACCGTCAATG 58.062 37.500 0.00 0.00 0.00 2.82
146 147 5.703592 ACTAAAATGCTACAACCGTCAATGA 59.296 36.000 0.00 0.00 0.00 2.57
147 148 5.446143 AAAATGCTACAACCGTCAATGAA 57.554 34.783 0.00 0.00 0.00 2.57
148 149 4.685169 AATGCTACAACCGTCAATGAAG 57.315 40.909 0.00 0.00 0.00 3.02
149 150 2.422597 TGCTACAACCGTCAATGAAGG 58.577 47.619 13.58 13.58 37.23 3.46
150 151 2.037902 TGCTACAACCGTCAATGAAGGA 59.962 45.455 21.52 0.00 34.89 3.36
151 152 3.270877 GCTACAACCGTCAATGAAGGAT 58.729 45.455 21.52 7.21 34.89 3.24
152 153 4.081365 TGCTACAACCGTCAATGAAGGATA 60.081 41.667 21.52 9.59 34.89 2.59
153 154 5.057149 GCTACAACCGTCAATGAAGGATAT 58.943 41.667 21.52 1.65 34.89 1.63
154 155 5.527582 GCTACAACCGTCAATGAAGGATATT 59.472 40.000 21.52 3.12 34.89 1.28
155 156 5.818136 ACAACCGTCAATGAAGGATATTG 57.182 39.130 21.52 16.47 34.89 1.90
156 157 4.096382 ACAACCGTCAATGAAGGATATTGC 59.904 41.667 21.52 0.00 34.89 3.56
157 158 3.884895 ACCGTCAATGAAGGATATTGCA 58.115 40.909 21.52 0.00 34.89 4.08
158 159 4.269183 ACCGTCAATGAAGGATATTGCAA 58.731 39.130 21.52 0.00 34.89 4.08
159 160 4.096382 ACCGTCAATGAAGGATATTGCAAC 59.904 41.667 21.52 0.00 34.89 4.17
160 161 4.498009 CCGTCAATGAAGGATATTGCAACC 60.498 45.833 9.67 0.00 35.90 3.77
161 162 4.601019 GTCAATGAAGGATATTGCAACCG 58.399 43.478 0.00 0.00 35.90 4.44
162 163 4.096382 GTCAATGAAGGATATTGCAACCGT 59.904 41.667 0.00 0.00 35.90 4.83
163 164 4.704540 TCAATGAAGGATATTGCAACCGTT 59.295 37.500 0.00 2.03 35.90 4.44
164 165 4.637483 ATGAAGGATATTGCAACCGTTG 57.363 40.909 0.00 6.91 0.00 4.10
165 166 3.680490 TGAAGGATATTGCAACCGTTGA 58.320 40.909 15.63 0.00 0.00 3.18
166 167 3.689161 TGAAGGATATTGCAACCGTTGAG 59.311 43.478 15.63 0.00 0.00 3.02
167 168 3.627395 AGGATATTGCAACCGTTGAGA 57.373 42.857 15.63 2.64 0.00 3.27
168 169 4.156455 AGGATATTGCAACCGTTGAGAT 57.844 40.909 15.63 9.66 0.00 2.75
169 170 3.879295 AGGATATTGCAACCGTTGAGATG 59.121 43.478 15.63 0.00 0.00 2.90
170 171 3.003689 GGATATTGCAACCGTTGAGATGG 59.996 47.826 15.63 0.00 37.98 3.51
171 172 0.527565 ATTGCAACCGTTGAGATGGC 59.472 50.000 15.63 0.00 35.16 4.40
172 173 1.851021 TTGCAACCGTTGAGATGGCG 61.851 55.000 15.63 0.00 35.16 5.69
173 174 2.325082 GCAACCGTTGAGATGGCGT 61.325 57.895 15.63 0.00 35.16 5.68
174 175 1.852067 GCAACCGTTGAGATGGCGTT 61.852 55.000 15.63 0.00 35.16 4.84
175 176 0.165944 CAACCGTTGAGATGGCGTTC 59.834 55.000 5.23 0.00 35.16 3.95
176 177 0.034896 AACCGTTGAGATGGCGTTCT 59.965 50.000 0.00 0.00 35.16 3.01
177 178 0.892755 ACCGTTGAGATGGCGTTCTA 59.107 50.000 0.00 0.00 35.16 2.10
178 179 1.278238 CCGTTGAGATGGCGTTCTAC 58.722 55.000 0.00 0.00 0.00 2.59
179 180 1.403647 CCGTTGAGATGGCGTTCTACA 60.404 52.381 0.00 0.00 0.00 2.74
180 181 2.333926 CGTTGAGATGGCGTTCTACAA 58.666 47.619 0.00 0.00 0.00 2.41
181 182 2.092211 CGTTGAGATGGCGTTCTACAAC 59.908 50.000 14.91 14.91 34.27 3.32
182 183 2.380084 TGAGATGGCGTTCTACAACC 57.620 50.000 0.00 0.00 0.00 3.77
183 184 1.621317 TGAGATGGCGTTCTACAACCA 59.379 47.619 0.00 0.00 36.43 3.67
184 185 2.271800 GAGATGGCGTTCTACAACCAG 58.728 52.381 0.00 0.00 35.20 4.00
185 186 0.727398 GATGGCGTTCTACAACCAGC 59.273 55.000 0.00 0.00 35.20 4.85
186 187 0.036164 ATGGCGTTCTACAACCAGCA 59.964 50.000 0.00 0.00 35.20 4.41
187 188 0.036164 TGGCGTTCTACAACCAGCAT 59.964 50.000 0.00 0.00 0.00 3.79
188 189 0.447801 GGCGTTCTACAACCAGCATG 59.552 55.000 0.00 0.00 0.00 4.06
189 190 1.438651 GCGTTCTACAACCAGCATGA 58.561 50.000 0.00 0.00 39.69 3.07
190 191 2.009774 GCGTTCTACAACCAGCATGAT 58.990 47.619 0.00 0.00 39.69 2.45
191 192 2.223112 GCGTTCTACAACCAGCATGATG 60.223 50.000 3.34 3.34 39.69 3.07
192 193 2.352651 CGTTCTACAACCAGCATGATGG 59.647 50.000 28.12 28.12 46.47 3.51
193 194 3.609853 GTTCTACAACCAGCATGATGGA 58.390 45.455 35.60 12.95 43.57 3.41
194 195 4.202441 GTTCTACAACCAGCATGATGGAT 58.798 43.478 35.60 22.49 43.57 3.41
195 196 3.812262 TCTACAACCAGCATGATGGATG 58.188 45.455 35.60 33.36 43.57 3.51
196 197 2.519771 ACAACCAGCATGATGGATGT 57.480 45.000 32.76 32.76 43.57 3.06
197 198 2.811410 ACAACCAGCATGATGGATGTT 58.189 42.857 32.76 20.24 43.57 2.71
198 199 2.494471 ACAACCAGCATGATGGATGTTG 59.506 45.455 32.76 27.63 43.57 3.33
199 200 1.108776 ACCAGCATGATGGATGTTGC 58.891 50.000 35.60 0.00 43.57 4.17
200 201 1.107945 CCAGCATGATGGATGTTGCA 58.892 50.000 26.03 0.00 43.57 4.08
201 202 1.478916 CCAGCATGATGGATGTTGCAA 59.521 47.619 26.03 0.00 43.57 4.08
202 203 2.536365 CAGCATGATGGATGTTGCAAC 58.464 47.619 22.83 22.83 39.69 4.17
203 204 1.479323 AGCATGATGGATGTTGCAACC 59.521 47.619 26.14 12.24 37.56 3.77
204 205 1.799917 GCATGATGGATGTTGCAACCG 60.800 52.381 26.14 5.17 35.22 4.44
205 206 1.105457 ATGATGGATGTTGCAACCGG 58.895 50.000 26.14 0.00 0.00 5.28
206 207 0.251121 TGATGGATGTTGCAACCGGT 60.251 50.000 26.14 12.60 0.00 5.28
207 208 1.003696 TGATGGATGTTGCAACCGGTA 59.996 47.619 26.14 8.49 0.00 4.02
208 209 1.670811 GATGGATGTTGCAACCGGTAG 59.329 52.381 26.14 0.00 0.00 3.18
209 210 0.322098 TGGATGTTGCAACCGGTAGG 60.322 55.000 26.14 4.30 45.13 3.18
210 211 0.035820 GGATGTTGCAACCGGTAGGA 60.036 55.000 26.14 6.55 41.02 2.94
211 212 1.612199 GGATGTTGCAACCGGTAGGAA 60.612 52.381 26.14 5.77 41.02 3.36
212 213 2.156098 GATGTTGCAACCGGTAGGAAA 58.844 47.619 26.14 0.42 41.02 3.13
213 214 2.054232 TGTTGCAACCGGTAGGAAAA 57.946 45.000 26.14 0.76 41.02 2.29
214 215 2.376109 TGTTGCAACCGGTAGGAAAAA 58.624 42.857 26.14 0.00 41.02 1.94
215 216 2.959707 TGTTGCAACCGGTAGGAAAAAT 59.040 40.909 26.14 0.00 41.02 1.82
216 217 3.243569 TGTTGCAACCGGTAGGAAAAATG 60.244 43.478 26.14 0.00 41.02 2.32
217 218 2.588620 TGCAACCGGTAGGAAAAATGT 58.411 42.857 8.00 0.00 41.02 2.71
218 219 2.959707 TGCAACCGGTAGGAAAAATGTT 59.040 40.909 8.00 0.00 41.02 2.71
219 220 3.243569 TGCAACCGGTAGGAAAAATGTTG 60.244 43.478 8.00 0.00 41.02 3.33
220 221 3.313690 CAACCGGTAGGAAAAATGTTGC 58.686 45.455 8.00 0.00 41.02 4.17
221 222 1.538075 ACCGGTAGGAAAAATGTTGCG 59.462 47.619 4.49 0.00 41.02 4.85
222 223 1.135517 CCGGTAGGAAAAATGTTGCGG 60.136 52.381 0.00 0.00 41.02 5.69
223 224 1.731098 CGGTAGGAAAAATGTTGCGGC 60.731 52.381 0.00 0.00 0.00 6.53
224 225 1.271102 GGTAGGAAAAATGTTGCGGCA 59.729 47.619 0.00 0.00 0.00 5.69
225 226 2.324860 GTAGGAAAAATGTTGCGGCAC 58.675 47.619 0.05 0.00 0.00 5.01
226 227 0.749649 AGGAAAAATGTTGCGGCACA 59.250 45.000 0.05 4.86 0.00 4.57
227 228 1.137872 AGGAAAAATGTTGCGGCACAA 59.862 42.857 0.05 0.00 35.33 3.33
228 229 1.936547 GGAAAAATGTTGCGGCACAAA 59.063 42.857 0.05 0.00 40.82 2.83
229 230 2.352960 GGAAAAATGTTGCGGCACAAAA 59.647 40.909 0.05 0.00 40.82 2.44
230 231 3.003171 GGAAAAATGTTGCGGCACAAAAT 59.997 39.130 0.05 0.00 40.82 1.82
231 232 3.605743 AAAATGTTGCGGCACAAAATG 57.394 38.095 0.05 0.00 40.82 2.32
243 244 2.730069 CACAAAATGCTGCAAAGTCGA 58.270 42.857 6.36 0.00 0.00 4.20
244 245 2.468777 CACAAAATGCTGCAAAGTCGAC 59.531 45.455 7.70 7.70 0.00 4.20
245 246 2.358898 ACAAAATGCTGCAAAGTCGACT 59.641 40.909 13.58 13.58 0.00 4.18
246 247 2.693797 AAATGCTGCAAAGTCGACTG 57.306 45.000 20.85 9.82 0.00 3.51
247 248 1.882912 AATGCTGCAAAGTCGACTGA 58.117 45.000 20.85 2.74 0.00 3.41
248 249 1.436600 ATGCTGCAAAGTCGACTGAG 58.563 50.000 20.85 15.59 0.00 3.35
249 250 0.389025 TGCTGCAAAGTCGACTGAGA 59.611 50.000 20.85 2.73 0.00 3.27
250 251 1.066914 GCTGCAAAGTCGACTGAGAG 58.933 55.000 20.85 13.48 0.00 3.20
251 252 1.604185 GCTGCAAAGTCGACTGAGAGT 60.604 52.381 20.85 0.00 0.00 3.24
252 253 2.323959 CTGCAAAGTCGACTGAGAGTC 58.676 52.381 20.85 6.23 41.71 3.36
253 254 1.957177 TGCAAAGTCGACTGAGAGTCT 59.043 47.619 20.85 0.00 42.92 3.24
254 255 2.287849 TGCAAAGTCGACTGAGAGTCTG 60.288 50.000 20.85 8.98 42.92 3.51
255 256 2.030717 GCAAAGTCGACTGAGAGTCTGA 60.031 50.000 20.85 0.00 42.92 3.27
256 257 3.551046 GCAAAGTCGACTGAGAGTCTGAA 60.551 47.826 20.85 0.00 42.92 3.02
257 258 4.611943 CAAAGTCGACTGAGAGTCTGAAA 58.388 43.478 20.85 0.00 42.92 2.69
258 259 3.907894 AGTCGACTGAGAGTCTGAAAC 57.092 47.619 19.30 0.00 42.92 2.78
259 260 3.482436 AGTCGACTGAGAGTCTGAAACT 58.518 45.455 19.30 0.00 42.92 2.66
260 261 3.886505 AGTCGACTGAGAGTCTGAAACTT 59.113 43.478 19.30 0.00 42.92 2.66
261 262 3.978217 GTCGACTGAGAGTCTGAAACTTG 59.022 47.826 8.70 0.00 42.92 3.16
262 263 3.004839 TCGACTGAGAGTCTGAAACTTGG 59.995 47.826 0.00 0.00 42.92 3.61
263 264 3.243569 CGACTGAGAGTCTGAAACTTGGT 60.244 47.826 0.00 0.00 42.92 3.67
264 265 4.698575 GACTGAGAGTCTGAAACTTGGTT 58.301 43.478 0.00 0.00 41.88 3.67
265 266 5.507482 CGACTGAGAGTCTGAAACTTGGTTA 60.507 44.000 0.00 0.00 42.92 2.85
266 267 6.235231 ACTGAGAGTCTGAAACTTGGTTAA 57.765 37.500 0.00 0.00 38.74 2.01
267 268 6.650120 ACTGAGAGTCTGAAACTTGGTTAAA 58.350 36.000 0.00 0.00 38.74 1.52
268 269 7.283329 ACTGAGAGTCTGAAACTTGGTTAAAT 58.717 34.615 0.00 0.00 38.74 1.40
269 270 7.442666 ACTGAGAGTCTGAAACTTGGTTAAATC 59.557 37.037 0.00 0.00 38.74 2.17
270 271 7.509546 TGAGAGTCTGAAACTTGGTTAAATCT 58.490 34.615 0.00 0.00 38.74 2.40
271 272 7.657761 TGAGAGTCTGAAACTTGGTTAAATCTC 59.342 37.037 0.00 0.00 38.74 2.75
272 273 7.509546 AGAGTCTGAAACTTGGTTAAATCTCA 58.490 34.615 0.00 0.00 38.74 3.27
273 274 7.659390 AGAGTCTGAAACTTGGTTAAATCTCAG 59.341 37.037 0.00 0.00 38.74 3.35
274 275 7.283329 AGTCTGAAACTTGGTTAAATCTCAGT 58.717 34.615 8.12 0.00 33.03 3.41
275 276 7.227512 AGTCTGAAACTTGGTTAAATCTCAGTG 59.772 37.037 8.12 0.00 33.03 3.66
276 277 7.012421 GTCTGAAACTTGGTTAAATCTCAGTGT 59.988 37.037 8.12 0.00 0.00 3.55
277 278 7.556275 TCTGAAACTTGGTTAAATCTCAGTGTT 59.444 33.333 8.12 0.00 0.00 3.32
278 279 8.062065 TGAAACTTGGTTAAATCTCAGTGTTT 57.938 30.769 0.00 0.00 0.00 2.83
279 280 8.527810 TGAAACTTGGTTAAATCTCAGTGTTTT 58.472 29.630 0.00 0.00 0.00 2.43
282 283 7.649057 ACTTGGTTAAATCTCAGTGTTTTAGC 58.351 34.615 0.00 0.00 0.00 3.09
283 284 7.284489 ACTTGGTTAAATCTCAGTGTTTTAGCA 59.716 33.333 0.00 0.00 0.00 3.49
292 293 3.699038 TCAGTGTTTTAGCAGGCTTGTTT 59.301 39.130 0.00 0.00 0.00 2.83
323 324 0.388134 ATCGAAACTGGTCGGACGTG 60.388 55.000 0.00 0.00 41.43 4.49
325 326 2.280592 AAACTGGTCGGACGTGCC 60.281 61.111 0.00 0.00 0.00 5.01
327 328 3.802418 AACTGGTCGGACGTGCCAC 62.802 63.158 0.00 0.00 35.94 5.01
328 329 4.293648 CTGGTCGGACGTGCCACA 62.294 66.667 7.17 0.20 35.94 4.17
330 331 2.358247 GGTCGGACGTGCCACATT 60.358 61.111 7.17 0.00 35.94 2.71
332 333 1.495951 GTCGGACGTGCCACATTTC 59.504 57.895 0.00 0.00 35.94 2.17
333 334 0.949105 GTCGGACGTGCCACATTTCT 60.949 55.000 0.00 0.00 35.94 2.52
334 335 0.604073 TCGGACGTGCCACATTTCTA 59.396 50.000 0.00 0.00 35.94 2.10
335 336 1.206132 TCGGACGTGCCACATTTCTAT 59.794 47.619 0.00 0.00 35.94 1.98
336 337 2.006888 CGGACGTGCCACATTTCTATT 58.993 47.619 0.00 0.00 35.94 1.73
337 338 2.418628 CGGACGTGCCACATTTCTATTT 59.581 45.455 0.00 0.00 35.94 1.40
338 339 3.727673 CGGACGTGCCACATTTCTATTTG 60.728 47.826 0.00 0.00 35.94 2.32
339 340 3.171277 GACGTGCCACATTTCTATTTGC 58.829 45.455 0.00 0.00 0.00 3.68
348 349 6.183360 GCCACATTTCTATTTGCCTCTAACAT 60.183 38.462 0.00 0.00 0.00 2.71
357 358 1.621317 TGCCTCTAACATGGACGTCAA 59.379 47.619 18.91 6.46 0.00 3.18
378 379 3.915437 TTTCTCTCCGGCAAAACAATC 57.085 42.857 0.00 0.00 0.00 2.67
379 380 2.559698 TCTCTCCGGCAAAACAATCA 57.440 45.000 0.00 0.00 0.00 2.57
382 383 0.883833 CTCCGGCAAAACAATCAGCT 59.116 50.000 0.00 0.00 0.00 4.24
383 384 2.083774 CTCCGGCAAAACAATCAGCTA 58.916 47.619 0.00 0.00 0.00 3.32
409 413 3.302221 CGTGTAAAACTTGGAGACGTGTG 60.302 47.826 0.00 0.00 0.00 3.82
413 417 3.764237 AAACTTGGAGACGTGTGGTAT 57.236 42.857 0.00 0.00 0.00 2.73
425 429 4.374399 ACGTGTGGTATTCGAGAAAACTT 58.626 39.130 0.00 0.00 0.00 2.66
436 440 3.316029 TCGAGAAAACTTGGAGACGTGTA 59.684 43.478 0.00 0.00 0.00 2.90
471 475 2.891580 ACTTAGAGAAGTCGGCAAGTCA 59.108 45.455 0.00 0.00 42.50 3.41
482 486 2.027653 TCGGCAAGTCATACCAACATGA 60.028 45.455 0.00 0.00 32.50 3.07
483 487 2.352651 CGGCAAGTCATACCAACATGAG 59.647 50.000 0.00 0.00 35.63 2.90
484 488 2.098117 GGCAAGTCATACCAACATGAGC 59.902 50.000 0.00 0.00 35.63 4.26
583 597 2.445565 TCATATCGCAGTCCATCAGC 57.554 50.000 0.00 0.00 0.00 4.26
588 602 2.993008 GCAGTCCATCAGCCAGGA 59.007 61.111 0.00 0.00 0.00 3.86
600 614 1.867233 CAGCCAGGATAACACGCATAC 59.133 52.381 0.00 0.00 0.00 2.39
602 616 1.537348 GCCAGGATAACACGCATACGA 60.537 52.381 0.00 0.00 43.93 3.43
603 617 2.866460 GCCAGGATAACACGCATACGAT 60.866 50.000 0.00 0.00 43.93 3.73
604 618 2.987149 CCAGGATAACACGCATACGATC 59.013 50.000 0.00 0.00 43.93 3.69
612 626 0.959553 ACGCATACGATCCGATCCTT 59.040 50.000 2.69 0.00 43.93 3.36
623 637 1.559219 TCCGATCCTTTCATCAGCCAA 59.441 47.619 0.00 0.00 0.00 4.52
627 641 3.614092 GATCCTTTCATCAGCCAACAGA 58.386 45.455 0.00 0.00 0.00 3.41
628 642 3.063510 TCCTTTCATCAGCCAACAGAG 57.936 47.619 0.00 0.00 0.00 3.35
629 643 2.373169 TCCTTTCATCAGCCAACAGAGT 59.627 45.455 0.00 0.00 0.00 3.24
630 644 3.152341 CCTTTCATCAGCCAACAGAGTT 58.848 45.455 0.00 0.00 0.00 3.01
632 646 4.154918 CCTTTCATCAGCCAACAGAGTTAC 59.845 45.833 0.00 0.00 0.00 2.50
634 648 4.350368 TCATCAGCCAACAGAGTTACAA 57.650 40.909 0.00 0.00 0.00 2.41
635 649 4.713553 TCATCAGCCAACAGAGTTACAAA 58.286 39.130 0.00 0.00 0.00 2.83
636 650 5.316167 TCATCAGCCAACAGAGTTACAAAT 58.684 37.500 0.00 0.00 0.00 2.32
637 651 5.412594 TCATCAGCCAACAGAGTTACAAATC 59.587 40.000 0.00 0.00 0.00 2.17
638 652 3.745975 TCAGCCAACAGAGTTACAAATCG 59.254 43.478 0.00 0.00 0.00 3.34
656 670 2.428569 TCGTCGTCTTCAGCGCAC 60.429 61.111 11.47 0.00 0.00 5.34
666 680 1.377366 TTCAGCGCACCGAAAACCAA 61.377 50.000 11.47 0.00 0.00 3.67
670 684 1.609555 AGCGCACCGAAAACCAATTAA 59.390 42.857 11.47 0.00 0.00 1.40
674 688 3.363426 CGCACCGAAAACCAATTAACATG 59.637 43.478 0.00 0.00 0.00 3.21
711 725 3.959975 GCAGGCAAACCGCGACAA 61.960 61.111 8.23 0.00 43.84 3.18
786 823 6.565623 GCTTTCATCAGAGACAAGAAGAACAC 60.566 42.308 0.00 0.00 0.00 3.32
820 857 1.153901 CGTGGACTCGTGGCGTATT 60.154 57.895 0.00 0.00 0.00 1.89
853 890 0.532862 CGTTGCCAGGTCAACTCTGT 60.533 55.000 18.78 0.00 42.98 3.41
855 892 2.143925 GTTGCCAGGTCAACTCTGTAC 58.856 52.381 15.65 0.00 42.15 2.90
923 960 2.512057 GGAGCAGCAGAGCAGAGC 60.512 66.667 0.00 0.00 36.85 4.09
953 990 1.134699 CAGAAGAATCTGCTGCCCGTA 60.135 52.381 5.13 0.00 46.11 4.02
1263 1300 1.273327 CAAGAAGGATGGTTGGGCAAC 59.727 52.381 0.00 0.00 40.45 4.17
1278 1315 2.315901 GGCAACGTAAATGTTCTGTGC 58.684 47.619 0.00 0.00 0.00 4.57
1294 1331 3.044986 CTGTGCATTCGTTGGTTCTTTG 58.955 45.455 0.00 0.00 0.00 2.77
1295 1332 2.425312 TGTGCATTCGTTGGTTCTTTGT 59.575 40.909 0.00 0.00 0.00 2.83
1345 1392 2.502213 TACATACGTGAGCGGATTGG 57.498 50.000 0.00 0.00 40.16 3.16
1346 1393 0.810031 ACATACGTGAGCGGATTGGC 60.810 55.000 0.00 0.00 40.16 4.52
1356 1403 3.565482 TGAGCGGATTGGCTAATTCATTC 59.435 43.478 1.63 0.00 44.93 2.67
1362 1443 6.481134 CGGATTGGCTAATTCATTCGATATG 58.519 40.000 1.63 0.00 0.00 1.78
1363 1444 6.092670 CGGATTGGCTAATTCATTCGATATGT 59.907 38.462 1.63 0.00 0.00 2.29
1364 1445 7.361201 CGGATTGGCTAATTCATTCGATATGTT 60.361 37.037 1.63 0.00 0.00 2.71
1365 1446 8.299570 GGATTGGCTAATTCATTCGATATGTTT 58.700 33.333 0.00 0.00 0.00 2.83
1369 1450 9.725019 TGGCTAATTCATTCGATATGTTTATCT 57.275 29.630 0.00 0.00 33.39 1.98
1390 1471 6.624352 TCTTGATTATTAAGTGGATGCAGC 57.376 37.500 0.00 0.00 0.00 5.25
1391 1472 5.532406 TCTTGATTATTAAGTGGATGCAGCC 59.468 40.000 15.83 15.83 0.00 4.85
1416 1497 8.082242 CCGTTCATATTGAGACACTGTATATGA 58.918 37.037 7.74 7.74 36.77 2.15
1448 1529 6.509199 GCATGATCTGTTCTCGTCAAAGTATG 60.509 42.308 0.00 0.00 0.00 2.39
1460 1541 4.142359 CGTCAAAGTATGGTAGAGACAGCT 60.142 45.833 0.00 0.00 0.00 4.24
1470 1551 4.118410 GGTAGAGACAGCTCATGTGATTG 58.882 47.826 0.00 0.00 44.17 2.67
1495 1576 5.404946 GCAGTGTGTTTAGCATCAAATCAT 58.595 37.500 0.00 0.00 0.00 2.45
1509 1590 8.029522 AGCATCAAATCATATACTACTACCACG 58.970 37.037 0.00 0.00 0.00 4.94
1510 1591 7.201444 GCATCAAATCATATACTACTACCACGC 60.201 40.741 0.00 0.00 0.00 5.34
1511 1592 6.684686 TCAAATCATATACTACTACCACGCC 58.315 40.000 0.00 0.00 0.00 5.68
1551 1890 8.492673 TCATAACATTTCACAGAACTACATCC 57.507 34.615 0.00 0.00 0.00 3.51
1562 1918 8.375506 TCACAGAACTACATCCTAGAAAATGTT 58.624 33.333 9.64 0.41 37.33 2.71
1579 1935 8.424133 AGAAAATGTTAAATGCATATTCCCTCC 58.576 33.333 0.00 0.00 0.00 4.30
1628 2197 8.585881 TGAGGGAGTACATGTAAATATCTTAGC 58.414 37.037 7.25 0.00 0.00 3.09
1629 2198 8.728596 AGGGAGTACATGTAAATATCTTAGCT 57.271 34.615 7.25 0.00 0.00 3.32
1630 2199 9.160412 AGGGAGTACATGTAAATATCTTAGCTT 57.840 33.333 7.25 0.00 0.00 3.74
1631 2200 9.780186 GGGAGTACATGTAAATATCTTAGCTTT 57.220 33.333 7.25 0.00 0.00 3.51
1777 2348 2.043652 GGGTCCATGCATGCCAGT 60.044 61.111 21.69 0.00 0.00 4.00
1815 2386 4.675303 CCACCCACCCCTCCTCCA 62.675 72.222 0.00 0.00 0.00 3.86
1819 2390 2.276740 CCACCCCTCCTCCAATGC 59.723 66.667 0.00 0.00 0.00 3.56
1889 2460 7.566709 TCGAACCGAAAGTACAAATTAAGTTC 58.433 34.615 0.00 3.83 31.06 3.01
1892 2463 7.754851 ACCGAAAGTACAAATTAAGTTCCAT 57.245 32.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.022735 AACACAGACGTCACTCGACT 58.977 50.000 19.50 0.00 44.13 4.18
2 3 1.836383 AAACACAGACGTCACTCGAC 58.164 50.000 19.50 0.00 42.86 4.20
3 4 2.572191 AAAACACAGACGTCACTCGA 57.428 45.000 19.50 0.00 42.86 4.04
25 26 2.697751 ACCATGCCACTTGTAGCAAAAA 59.302 40.909 0.00 0.00 43.36 1.94
26 27 2.315176 ACCATGCCACTTGTAGCAAAA 58.685 42.857 0.00 0.00 43.36 2.44
27 28 1.993956 ACCATGCCACTTGTAGCAAA 58.006 45.000 0.00 0.00 43.36 3.68
28 29 1.612950 CAACCATGCCACTTGTAGCAA 59.387 47.619 0.00 0.00 43.36 3.91
29 30 1.246649 CAACCATGCCACTTGTAGCA 58.753 50.000 0.00 0.00 44.45 3.49
30 31 0.527565 CCAACCATGCCACTTGTAGC 59.472 55.000 0.00 0.00 0.00 3.58
31 32 2.198827 TCCAACCATGCCACTTGTAG 57.801 50.000 0.00 0.00 0.00 2.74
32 33 2.445427 CATCCAACCATGCCACTTGTA 58.555 47.619 0.00 0.00 0.00 2.41
33 34 1.259609 CATCCAACCATGCCACTTGT 58.740 50.000 0.00 0.00 0.00 3.16
34 35 0.108520 GCATCCAACCATGCCACTTG 60.109 55.000 0.00 0.00 43.03 3.16
35 36 2.279842 GCATCCAACCATGCCACTT 58.720 52.632 0.00 0.00 43.03 3.16
36 37 4.023137 GCATCCAACCATGCCACT 57.977 55.556 0.00 0.00 43.03 4.00
41 42 2.355756 CCGTTTCTAGCATCCAACCATG 59.644 50.000 0.00 0.00 0.00 3.66
42 43 2.026262 ACCGTTTCTAGCATCCAACCAT 60.026 45.455 0.00 0.00 0.00 3.55
43 44 1.349688 ACCGTTTCTAGCATCCAACCA 59.650 47.619 0.00 0.00 0.00 3.67
44 45 1.737793 CACCGTTTCTAGCATCCAACC 59.262 52.381 0.00 0.00 0.00 3.77
45 46 2.695359 TCACCGTTTCTAGCATCCAAC 58.305 47.619 0.00 0.00 0.00 3.77
46 47 3.055458 TCATCACCGTTTCTAGCATCCAA 60.055 43.478 0.00 0.00 0.00 3.53
47 48 2.499693 TCATCACCGTTTCTAGCATCCA 59.500 45.455 0.00 0.00 0.00 3.41
48 49 3.179443 TCATCACCGTTTCTAGCATCC 57.821 47.619 0.00 0.00 0.00 3.51
49 50 5.545658 TTTTCATCACCGTTTCTAGCATC 57.454 39.130 0.00 0.00 0.00 3.91
50 51 5.957842 TTTTTCATCACCGTTTCTAGCAT 57.042 34.783 0.00 0.00 0.00 3.79
51 52 5.240623 ACATTTTTCATCACCGTTTCTAGCA 59.759 36.000 0.00 0.00 0.00 3.49
52 53 5.699839 ACATTTTTCATCACCGTTTCTAGC 58.300 37.500 0.00 0.00 0.00 3.42
53 54 7.113404 CACAACATTTTTCATCACCGTTTCTAG 59.887 37.037 0.00 0.00 0.00 2.43
54 55 6.915300 CACAACATTTTTCATCACCGTTTCTA 59.085 34.615 0.00 0.00 0.00 2.10
55 56 5.748152 CACAACATTTTTCATCACCGTTTCT 59.252 36.000 0.00 0.00 0.00 2.52
56 57 5.746245 TCACAACATTTTTCATCACCGTTTC 59.254 36.000 0.00 0.00 0.00 2.78
57 58 5.655488 TCACAACATTTTTCATCACCGTTT 58.345 33.333 0.00 0.00 0.00 3.60
58 59 5.255710 TCACAACATTTTTCATCACCGTT 57.744 34.783 0.00 0.00 0.00 4.44
59 60 4.909696 TCACAACATTTTTCATCACCGT 57.090 36.364 0.00 0.00 0.00 4.83
60 61 4.622313 CCATCACAACATTTTTCATCACCG 59.378 41.667 0.00 0.00 0.00 4.94
61 62 5.540911 ACCATCACAACATTTTTCATCACC 58.459 37.500 0.00 0.00 0.00 4.02
62 63 8.649841 CAATACCATCACAACATTTTTCATCAC 58.350 33.333 0.00 0.00 0.00 3.06
63 64 7.331440 GCAATACCATCACAACATTTTTCATCA 59.669 33.333 0.00 0.00 0.00 3.07
64 65 7.331440 TGCAATACCATCACAACATTTTTCATC 59.669 33.333 0.00 0.00 0.00 2.92
65 66 7.160049 TGCAATACCATCACAACATTTTTCAT 58.840 30.769 0.00 0.00 0.00 2.57
66 67 6.519382 TGCAATACCATCACAACATTTTTCA 58.481 32.000 0.00 0.00 0.00 2.69
67 68 6.091169 CCTGCAATACCATCACAACATTTTTC 59.909 38.462 0.00 0.00 0.00 2.29
68 69 5.933463 CCTGCAATACCATCACAACATTTTT 59.067 36.000 0.00 0.00 0.00 1.94
69 70 5.481105 CCTGCAATACCATCACAACATTTT 58.519 37.500 0.00 0.00 0.00 1.82
70 71 4.621274 GCCTGCAATACCATCACAACATTT 60.621 41.667 0.00 0.00 0.00 2.32
71 72 3.119029 GCCTGCAATACCATCACAACATT 60.119 43.478 0.00 0.00 0.00 2.71
72 73 2.428171 GCCTGCAATACCATCACAACAT 59.572 45.455 0.00 0.00 0.00 2.71
73 74 1.818060 GCCTGCAATACCATCACAACA 59.182 47.619 0.00 0.00 0.00 3.33
74 75 1.818060 TGCCTGCAATACCATCACAAC 59.182 47.619 0.00 0.00 0.00 3.32
75 76 2.212812 TGCCTGCAATACCATCACAA 57.787 45.000 0.00 0.00 0.00 3.33
76 77 2.093890 CTTGCCTGCAATACCATCACA 58.906 47.619 4.84 0.00 35.20 3.58
77 78 2.368439 TCTTGCCTGCAATACCATCAC 58.632 47.619 4.84 0.00 35.20 3.06
78 79 2.754552 GTTCTTGCCTGCAATACCATCA 59.245 45.455 4.84 0.00 35.20 3.07
79 80 2.754552 TGTTCTTGCCTGCAATACCATC 59.245 45.455 4.84 0.00 35.20 3.51
80 81 2.806434 TGTTCTTGCCTGCAATACCAT 58.194 42.857 4.84 0.00 35.20 3.55
81 82 2.284754 TGTTCTTGCCTGCAATACCA 57.715 45.000 4.84 0.00 35.20 3.25
82 83 3.874392 ATTGTTCTTGCCTGCAATACC 57.126 42.857 4.84 0.00 35.20 2.73
83 84 7.761249 AGAATTTATTGTTCTTGCCTGCAATAC 59.239 33.333 4.84 7.51 34.70 1.89
84 85 7.839907 AGAATTTATTGTTCTTGCCTGCAATA 58.160 30.769 4.84 0.00 32.17 1.90
85 86 6.704310 AGAATTTATTGTTCTTGCCTGCAAT 58.296 32.000 4.84 0.00 32.17 3.56
86 87 6.100404 AGAATTTATTGTTCTTGCCTGCAA 57.900 33.333 4.28 4.28 32.17 4.08
87 88 5.726980 AGAATTTATTGTTCTTGCCTGCA 57.273 34.783 0.00 0.00 32.17 4.41
88 89 6.620678 TGTAGAATTTATTGTTCTTGCCTGC 58.379 36.000 0.00 0.00 37.18 4.85
89 90 7.542130 GGTTGTAGAATTTATTGTTCTTGCCTG 59.458 37.037 0.00 0.00 37.18 4.85
90 91 7.574967 CGGTTGTAGAATTTATTGTTCTTGCCT 60.575 37.037 0.00 0.00 37.18 4.75
91 92 6.526674 CGGTTGTAGAATTTATTGTTCTTGCC 59.473 38.462 0.00 0.00 37.18 4.52
92 93 7.081976 ACGGTTGTAGAATTTATTGTTCTTGC 58.918 34.615 0.00 0.00 37.18 4.01
93 94 9.113876 GAACGGTTGTAGAATTTATTGTTCTTG 57.886 33.333 0.00 0.00 37.18 3.02
94 95 9.063615 AGAACGGTTGTAGAATTTATTGTTCTT 57.936 29.630 0.00 0.00 39.22 2.52
95 96 8.617290 AGAACGGTTGTAGAATTTATTGTTCT 57.383 30.769 0.00 0.00 37.92 3.01
98 99 9.498176 AGTTAGAACGGTTGTAGAATTTATTGT 57.502 29.630 0.00 0.00 0.00 2.71
105 106 8.448615 GCATTTTAGTTAGAACGGTTGTAGAAT 58.551 33.333 0.00 0.00 0.00 2.40
106 107 7.658575 AGCATTTTAGTTAGAACGGTTGTAGAA 59.341 33.333 0.00 0.00 0.00 2.10
107 108 7.156673 AGCATTTTAGTTAGAACGGTTGTAGA 58.843 34.615 0.00 0.00 0.00 2.59
108 109 7.360575 AGCATTTTAGTTAGAACGGTTGTAG 57.639 36.000 0.00 0.00 0.00 2.74
109 110 7.871973 TGTAGCATTTTAGTTAGAACGGTTGTA 59.128 33.333 0.00 0.00 0.00 2.41
110 111 6.707161 TGTAGCATTTTAGTTAGAACGGTTGT 59.293 34.615 0.00 0.00 0.00 3.32
111 112 7.124347 TGTAGCATTTTAGTTAGAACGGTTG 57.876 36.000 0.00 0.00 0.00 3.77
112 113 7.308169 GGTTGTAGCATTTTAGTTAGAACGGTT 60.308 37.037 0.00 0.00 31.99 4.44
113 114 6.148315 GGTTGTAGCATTTTAGTTAGAACGGT 59.852 38.462 0.00 0.00 31.99 4.83
114 115 6.540205 GGTTGTAGCATTTTAGTTAGAACGG 58.460 40.000 0.00 0.00 31.99 4.44
115 116 6.128742 ACGGTTGTAGCATTTTAGTTAGAACG 60.129 38.462 0.00 0.00 31.99 3.95
116 117 7.095523 TGACGGTTGTAGCATTTTAGTTAGAAC 60.096 37.037 0.00 0.00 30.96 3.01
117 118 6.930164 TGACGGTTGTAGCATTTTAGTTAGAA 59.070 34.615 0.00 0.00 0.00 2.10
118 119 6.457355 TGACGGTTGTAGCATTTTAGTTAGA 58.543 36.000 0.00 0.00 0.00 2.10
119 120 6.715344 TGACGGTTGTAGCATTTTAGTTAG 57.285 37.500 0.00 0.00 0.00 2.34
120 121 7.388224 TCATTGACGGTTGTAGCATTTTAGTTA 59.612 33.333 0.00 0.00 0.00 2.24
121 122 6.205853 TCATTGACGGTTGTAGCATTTTAGTT 59.794 34.615 0.00 0.00 0.00 2.24
122 123 5.703592 TCATTGACGGTTGTAGCATTTTAGT 59.296 36.000 0.00 0.00 0.00 2.24
123 124 6.176975 TCATTGACGGTTGTAGCATTTTAG 57.823 37.500 0.00 0.00 0.00 1.85
124 125 6.348950 CCTTCATTGACGGTTGTAGCATTTTA 60.349 38.462 1.05 0.00 0.00 1.52
125 126 5.446143 TTCATTGACGGTTGTAGCATTTT 57.554 34.783 0.00 0.00 0.00 1.82
126 127 4.082787 CCTTCATTGACGGTTGTAGCATTT 60.083 41.667 1.05 0.00 0.00 2.32
127 128 3.440173 CCTTCATTGACGGTTGTAGCATT 59.560 43.478 1.05 0.00 0.00 3.56
128 129 3.009723 CCTTCATTGACGGTTGTAGCAT 58.990 45.455 1.05 0.00 0.00 3.79
129 130 2.037902 TCCTTCATTGACGGTTGTAGCA 59.962 45.455 8.86 0.00 0.00 3.49
130 131 2.695359 TCCTTCATTGACGGTTGTAGC 58.305 47.619 8.86 0.00 0.00 3.58
131 132 6.511767 GCAATATCCTTCATTGACGGTTGTAG 60.512 42.308 8.86 0.73 35.77 2.74
132 133 5.295787 GCAATATCCTTCATTGACGGTTGTA 59.704 40.000 8.86 2.72 35.77 2.41
133 134 4.096382 GCAATATCCTTCATTGACGGTTGT 59.904 41.667 8.86 0.00 35.77 3.32
134 135 4.096231 TGCAATATCCTTCATTGACGGTTG 59.904 41.667 8.86 7.60 35.77 3.77
135 136 4.269183 TGCAATATCCTTCATTGACGGTT 58.731 39.130 8.86 3.90 35.77 4.44
136 137 3.884895 TGCAATATCCTTCATTGACGGT 58.115 40.909 8.86 0.53 35.77 4.83
137 138 4.498009 GGTTGCAATATCCTTCATTGACGG 60.498 45.833 0.59 2.80 35.77 4.79
138 139 4.601019 GGTTGCAATATCCTTCATTGACG 58.399 43.478 0.59 0.00 35.77 4.35
139 140 4.096382 ACGGTTGCAATATCCTTCATTGAC 59.904 41.667 0.59 0.00 35.77 3.18
140 141 4.269183 ACGGTTGCAATATCCTTCATTGA 58.731 39.130 0.59 0.00 35.77 2.57
141 142 4.637483 ACGGTTGCAATATCCTTCATTG 57.363 40.909 0.59 0.00 36.63 2.82
142 143 4.704540 TCAACGGTTGCAATATCCTTCATT 59.295 37.500 15.89 0.00 0.00 2.57
143 144 4.269183 TCAACGGTTGCAATATCCTTCAT 58.731 39.130 15.89 0.00 0.00 2.57
144 145 3.680490 TCAACGGTTGCAATATCCTTCA 58.320 40.909 15.89 0.00 0.00 3.02
145 146 3.938963 TCTCAACGGTTGCAATATCCTTC 59.061 43.478 15.89 0.00 0.00 3.46
146 147 3.950397 TCTCAACGGTTGCAATATCCTT 58.050 40.909 15.89 0.00 0.00 3.36
147 148 3.627395 TCTCAACGGTTGCAATATCCT 57.373 42.857 15.89 0.00 0.00 3.24
148 149 3.003689 CCATCTCAACGGTTGCAATATCC 59.996 47.826 15.89 0.00 0.00 2.59
149 150 3.548818 GCCATCTCAACGGTTGCAATATC 60.549 47.826 15.89 0.00 0.00 1.63
150 151 2.358898 GCCATCTCAACGGTTGCAATAT 59.641 45.455 15.89 4.06 0.00 1.28
151 152 1.742831 GCCATCTCAACGGTTGCAATA 59.257 47.619 15.89 0.00 0.00 1.90
152 153 0.527565 GCCATCTCAACGGTTGCAAT 59.472 50.000 15.89 8.68 0.00 3.56
153 154 1.851021 CGCCATCTCAACGGTTGCAA 61.851 55.000 15.89 0.00 0.00 4.08
154 155 2.324330 CGCCATCTCAACGGTTGCA 61.324 57.895 15.89 5.48 0.00 4.08
155 156 1.852067 AACGCCATCTCAACGGTTGC 61.852 55.000 15.89 2.41 0.00 4.17
156 157 0.165944 GAACGCCATCTCAACGGTTG 59.834 55.000 14.62 14.62 0.00 3.77
157 158 0.034896 AGAACGCCATCTCAACGGTT 59.965 50.000 0.00 0.00 0.00 4.44
158 159 0.892755 TAGAACGCCATCTCAACGGT 59.107 50.000 0.00 0.00 0.00 4.83
159 160 1.278238 GTAGAACGCCATCTCAACGG 58.722 55.000 0.00 0.00 0.00 4.44
160 161 1.990799 TGTAGAACGCCATCTCAACG 58.009 50.000 0.00 0.00 0.00 4.10
161 162 2.415512 GGTTGTAGAACGCCATCTCAAC 59.584 50.000 13.92 13.92 37.09 3.18
162 163 2.037902 TGGTTGTAGAACGCCATCTCAA 59.962 45.455 0.00 0.00 32.28 3.02
163 164 1.621317 TGGTTGTAGAACGCCATCTCA 59.379 47.619 0.00 0.00 32.28 3.27
164 165 2.271800 CTGGTTGTAGAACGCCATCTC 58.728 52.381 0.00 0.00 32.28 2.75
165 166 1.676014 GCTGGTTGTAGAACGCCATCT 60.676 52.381 0.00 0.00 32.28 2.90
166 167 0.727398 GCTGGTTGTAGAACGCCATC 59.273 55.000 0.00 0.00 32.28 3.51
167 168 0.036164 TGCTGGTTGTAGAACGCCAT 59.964 50.000 0.00 0.00 32.28 4.40
168 169 0.036164 ATGCTGGTTGTAGAACGCCA 59.964 50.000 0.00 0.00 32.28 5.69
169 170 0.447801 CATGCTGGTTGTAGAACGCC 59.552 55.000 0.00 0.00 32.28 5.68
170 171 1.438651 TCATGCTGGTTGTAGAACGC 58.561 50.000 0.00 0.00 32.28 4.84
171 172 2.352651 CCATCATGCTGGTTGTAGAACG 59.647 50.000 7.46 0.00 32.28 3.95
172 173 3.609853 TCCATCATGCTGGTTGTAGAAC 58.390 45.455 15.03 0.00 37.57 3.01
173 174 3.998913 TCCATCATGCTGGTTGTAGAA 57.001 42.857 15.03 0.00 37.57 2.10
174 175 3.200605 ACATCCATCATGCTGGTTGTAGA 59.799 43.478 24.19 3.13 43.92 2.59
175 176 3.548770 ACATCCATCATGCTGGTTGTAG 58.451 45.455 24.19 10.65 43.92 2.74
176 177 3.650281 ACATCCATCATGCTGGTTGTA 57.350 42.857 24.19 4.14 43.92 2.41
177 178 2.494471 CAACATCCATCATGCTGGTTGT 59.506 45.455 21.29 21.29 46.37 3.32
178 179 2.737359 GCAACATCCATCATGCTGGTTG 60.737 50.000 20.20 20.20 40.40 3.77
179 180 1.479323 GCAACATCCATCATGCTGGTT 59.521 47.619 15.03 4.42 37.57 3.67
180 181 1.108776 GCAACATCCATCATGCTGGT 58.891 50.000 15.03 0.61 37.57 4.00
181 182 1.107945 TGCAACATCCATCATGCTGG 58.892 50.000 9.41 9.41 39.49 4.85
182 183 2.536365 GTTGCAACATCCATCATGCTG 58.464 47.619 24.52 0.00 39.49 4.41
183 184 1.479323 GGTTGCAACATCCATCATGCT 59.521 47.619 29.55 0.00 39.49 3.79
184 185 1.799917 CGGTTGCAACATCCATCATGC 60.800 52.381 29.55 8.33 35.65 4.06
185 186 1.202325 CCGGTTGCAACATCCATCATG 60.202 52.381 29.55 8.14 38.64 3.07
186 187 1.105457 CCGGTTGCAACATCCATCAT 58.895 50.000 29.55 0.00 0.00 2.45
187 188 0.251121 ACCGGTTGCAACATCCATCA 60.251 50.000 29.55 0.00 0.00 3.07
188 189 1.670811 CTACCGGTTGCAACATCCATC 59.329 52.381 29.55 11.15 0.00 3.51
189 190 1.681780 CCTACCGGTTGCAACATCCAT 60.682 52.381 29.55 12.98 0.00 3.41
190 191 0.322098 CCTACCGGTTGCAACATCCA 60.322 55.000 29.55 11.71 0.00 3.41
191 192 0.035820 TCCTACCGGTTGCAACATCC 60.036 55.000 29.55 12.94 0.00 3.51
192 193 1.816074 TTCCTACCGGTTGCAACATC 58.184 50.000 29.55 13.31 0.00 3.06
193 194 2.279935 TTTCCTACCGGTTGCAACAT 57.720 45.000 29.55 17.03 0.00 2.71
194 195 2.054232 TTTTCCTACCGGTTGCAACA 57.946 45.000 29.55 9.45 0.00 3.33
195 196 3.243602 ACATTTTTCCTACCGGTTGCAAC 60.244 43.478 21.59 21.59 0.00 4.17
196 197 2.959707 ACATTTTTCCTACCGGTTGCAA 59.040 40.909 15.04 0.00 0.00 4.08
197 198 2.588620 ACATTTTTCCTACCGGTTGCA 58.411 42.857 15.04 0.00 0.00 4.08
198 199 3.313690 CAACATTTTTCCTACCGGTTGC 58.686 45.455 15.04 0.00 0.00 4.17
199 200 3.313690 GCAACATTTTTCCTACCGGTTG 58.686 45.455 15.04 11.73 37.71 3.77
200 201 2.030628 CGCAACATTTTTCCTACCGGTT 60.031 45.455 15.04 0.00 0.00 4.44
201 202 1.538075 CGCAACATTTTTCCTACCGGT 59.462 47.619 13.98 13.98 0.00 5.28
202 203 1.135517 CCGCAACATTTTTCCTACCGG 60.136 52.381 0.00 0.00 0.00 5.28
203 204 1.731098 GCCGCAACATTTTTCCTACCG 60.731 52.381 0.00 0.00 0.00 4.02
204 205 1.271102 TGCCGCAACATTTTTCCTACC 59.729 47.619 0.00 0.00 0.00 3.18
205 206 2.287909 TGTGCCGCAACATTTTTCCTAC 60.288 45.455 0.00 0.00 0.00 3.18
206 207 1.957177 TGTGCCGCAACATTTTTCCTA 59.043 42.857 0.00 0.00 0.00 2.94
207 208 0.749649 TGTGCCGCAACATTTTTCCT 59.250 45.000 0.00 0.00 0.00 3.36
208 209 1.576356 TTGTGCCGCAACATTTTTCC 58.424 45.000 0.00 0.00 31.07 3.13
209 210 3.665173 TTTTGTGCCGCAACATTTTTC 57.335 38.095 0.00 0.00 36.72 2.29
210 211 3.950078 CATTTTGTGCCGCAACATTTTT 58.050 36.364 0.00 0.00 36.72 1.94
211 212 3.605743 CATTTTGTGCCGCAACATTTT 57.394 38.095 0.00 0.00 36.72 1.82
223 224 2.468777 GTCGACTTTGCAGCATTTTGTG 59.531 45.455 8.70 0.00 0.00 3.33
224 225 2.358898 AGTCGACTTTGCAGCATTTTGT 59.641 40.909 13.58 0.00 0.00 2.83
225 226 2.722629 CAGTCGACTTTGCAGCATTTTG 59.277 45.455 17.26 0.00 0.00 2.44
226 227 2.618241 TCAGTCGACTTTGCAGCATTTT 59.382 40.909 17.26 0.00 0.00 1.82
227 228 2.221169 TCAGTCGACTTTGCAGCATTT 58.779 42.857 17.26 0.00 0.00 2.32
228 229 1.802960 CTCAGTCGACTTTGCAGCATT 59.197 47.619 17.26 0.00 0.00 3.56
229 230 1.001293 TCTCAGTCGACTTTGCAGCAT 59.999 47.619 17.26 0.00 0.00 3.79
230 231 0.389025 TCTCAGTCGACTTTGCAGCA 59.611 50.000 17.26 0.00 0.00 4.41
231 232 1.066914 CTCTCAGTCGACTTTGCAGC 58.933 55.000 17.26 0.00 0.00 5.25
232 233 2.323959 GACTCTCAGTCGACTTTGCAG 58.676 52.381 17.26 11.73 35.28 4.41
233 234 2.423926 GACTCTCAGTCGACTTTGCA 57.576 50.000 17.26 0.00 35.28 4.08
242 243 4.329462 ACCAAGTTTCAGACTCTCAGTC 57.671 45.455 0.00 0.00 45.38 3.51
243 244 4.762289 AACCAAGTTTCAGACTCTCAGT 57.238 40.909 0.00 0.00 37.72 3.41
244 245 7.659390 AGATTTAACCAAGTTTCAGACTCTCAG 59.341 37.037 0.00 0.00 37.72 3.35
245 246 7.509546 AGATTTAACCAAGTTTCAGACTCTCA 58.490 34.615 0.00 0.00 37.72 3.27
246 247 7.657761 TGAGATTTAACCAAGTTTCAGACTCTC 59.342 37.037 0.00 0.00 37.72 3.20
247 248 7.509546 TGAGATTTAACCAAGTTTCAGACTCT 58.490 34.615 0.00 0.00 37.72 3.24
248 249 7.442666 ACTGAGATTTAACCAAGTTTCAGACTC 59.557 37.037 11.21 0.00 35.71 3.36
249 250 7.227512 CACTGAGATTTAACCAAGTTTCAGACT 59.772 37.037 11.21 0.00 35.71 3.24
250 251 7.012421 ACACTGAGATTTAACCAAGTTTCAGAC 59.988 37.037 11.21 0.00 35.71 3.51
251 252 7.054124 ACACTGAGATTTAACCAAGTTTCAGA 58.946 34.615 11.21 0.00 35.71 3.27
252 253 7.264373 ACACTGAGATTTAACCAAGTTTCAG 57.736 36.000 5.13 5.13 38.10 3.02
253 254 7.639113 AACACTGAGATTTAACCAAGTTTCA 57.361 32.000 0.00 0.00 0.00 2.69
254 255 8.926715 AAAACACTGAGATTTAACCAAGTTTC 57.073 30.769 0.00 0.00 0.00 2.78
256 257 8.135529 GCTAAAACACTGAGATTTAACCAAGTT 58.864 33.333 0.00 0.00 0.00 2.66
257 258 7.284489 TGCTAAAACACTGAGATTTAACCAAGT 59.716 33.333 0.00 0.00 0.00 3.16
258 259 7.648142 TGCTAAAACACTGAGATTTAACCAAG 58.352 34.615 0.00 0.00 0.00 3.61
259 260 7.255451 CCTGCTAAAACACTGAGATTTAACCAA 60.255 37.037 0.00 0.00 0.00 3.67
260 261 6.206634 CCTGCTAAAACACTGAGATTTAACCA 59.793 38.462 0.00 0.00 0.00 3.67
261 262 6.612306 CCTGCTAAAACACTGAGATTTAACC 58.388 40.000 0.00 0.00 0.00 2.85
262 263 6.072452 AGCCTGCTAAAACACTGAGATTTAAC 60.072 38.462 0.00 0.00 0.00 2.01
263 264 6.003950 AGCCTGCTAAAACACTGAGATTTAA 58.996 36.000 0.00 0.00 0.00 1.52
264 265 5.560724 AGCCTGCTAAAACACTGAGATTTA 58.439 37.500 0.00 0.00 0.00 1.40
265 266 4.401925 AGCCTGCTAAAACACTGAGATTT 58.598 39.130 0.00 0.00 0.00 2.17
266 267 4.026356 AGCCTGCTAAAACACTGAGATT 57.974 40.909 0.00 0.00 0.00 2.40
267 268 3.710209 AGCCTGCTAAAACACTGAGAT 57.290 42.857 0.00 0.00 0.00 2.75
268 269 3.141398 CAAGCCTGCTAAAACACTGAGA 58.859 45.455 0.00 0.00 0.00 3.27
269 270 2.880890 ACAAGCCTGCTAAAACACTGAG 59.119 45.455 0.00 0.00 0.00 3.35
270 271 2.930950 ACAAGCCTGCTAAAACACTGA 58.069 42.857 0.00 0.00 0.00 3.41
271 272 3.715628 AACAAGCCTGCTAAAACACTG 57.284 42.857 0.00 0.00 0.00 3.66
272 273 3.447229 ACAAACAAGCCTGCTAAAACACT 59.553 39.130 0.00 0.00 0.00 3.55
273 274 3.780902 ACAAACAAGCCTGCTAAAACAC 58.219 40.909 0.00 0.00 0.00 3.32
274 275 5.584253 TTACAAACAAGCCTGCTAAAACA 57.416 34.783 0.00 0.00 0.00 2.83
275 276 6.895607 TTTTACAAACAAGCCTGCTAAAAC 57.104 33.333 0.00 0.00 0.00 2.43
276 277 7.268586 TGATTTTACAAACAAGCCTGCTAAAA 58.731 30.769 0.00 0.00 0.00 1.52
277 278 6.810911 TGATTTTACAAACAAGCCTGCTAAA 58.189 32.000 0.00 0.00 0.00 1.85
278 279 6.398234 TGATTTTACAAACAAGCCTGCTAA 57.602 33.333 0.00 0.00 0.00 3.09
279 280 6.588719 ATGATTTTACAAACAAGCCTGCTA 57.411 33.333 0.00 0.00 0.00 3.49
280 281 4.935352 TGATTTTACAAACAAGCCTGCT 57.065 36.364 0.00 0.00 0.00 4.24
281 282 7.253750 CGATTATGATTTTACAAACAAGCCTGC 60.254 37.037 0.00 0.00 0.00 4.85
282 283 7.967854 TCGATTATGATTTTACAAACAAGCCTG 59.032 33.333 0.00 0.00 0.00 4.85
283 284 8.050778 TCGATTATGATTTTACAAACAAGCCT 57.949 30.769 0.00 0.00 0.00 4.58
292 293 7.201574 CCGACCAGTTTCGATTATGATTTTACA 60.202 37.037 0.00 0.00 41.78 2.41
323 324 5.125417 TGTTAGAGGCAAATAGAAATGTGGC 59.875 40.000 0.00 0.00 44.46 5.01
325 326 7.067372 TCCATGTTAGAGGCAAATAGAAATGTG 59.933 37.037 0.00 0.00 0.00 3.21
327 328 7.420800 GTCCATGTTAGAGGCAAATAGAAATG 58.579 38.462 0.00 0.00 0.00 2.32
328 329 6.260936 CGTCCATGTTAGAGGCAAATAGAAAT 59.739 38.462 0.00 0.00 0.00 2.17
330 331 5.116180 CGTCCATGTTAGAGGCAAATAGAA 58.884 41.667 0.00 0.00 0.00 2.10
332 333 4.442706 ACGTCCATGTTAGAGGCAAATAG 58.557 43.478 0.00 0.00 0.00 1.73
333 334 4.081365 TGACGTCCATGTTAGAGGCAAATA 60.081 41.667 14.12 0.00 0.00 1.40
334 335 3.270877 GACGTCCATGTTAGAGGCAAAT 58.729 45.455 3.51 0.00 0.00 2.32
335 336 2.037902 TGACGTCCATGTTAGAGGCAAA 59.962 45.455 14.12 0.00 0.00 3.68
336 337 1.621317 TGACGTCCATGTTAGAGGCAA 59.379 47.619 14.12 0.00 0.00 4.52
337 338 1.262417 TGACGTCCATGTTAGAGGCA 58.738 50.000 14.12 0.00 0.00 4.75
338 339 2.380084 TTGACGTCCATGTTAGAGGC 57.620 50.000 14.12 0.00 0.00 4.70
339 340 5.178797 AGAAATTGACGTCCATGTTAGAGG 58.821 41.667 14.12 0.00 0.00 3.69
348 349 1.067142 CCGGAGAGAAATTGACGTCCA 60.067 52.381 14.12 1.38 0.00 4.02
357 358 3.826157 TGATTGTTTTGCCGGAGAGAAAT 59.174 39.130 5.05 0.00 0.00 2.17
378 379 3.058501 CCAAGTTTTACACGGGTTAGCTG 60.059 47.826 0.00 0.00 0.00 4.24
379 380 3.143728 CCAAGTTTTACACGGGTTAGCT 58.856 45.455 0.00 0.00 0.00 3.32
382 383 4.379652 GTCTCCAAGTTTTACACGGGTTA 58.620 43.478 0.00 0.00 0.00 2.85
383 384 3.208594 GTCTCCAAGTTTTACACGGGTT 58.791 45.455 0.00 0.00 0.00 4.11
409 413 4.326548 CGTCTCCAAGTTTTCTCGAATACC 59.673 45.833 0.00 0.00 0.00 2.73
413 417 3.120792 CACGTCTCCAAGTTTTCTCGAA 58.879 45.455 0.00 0.00 0.00 3.71
455 459 2.094182 TGGTATGACTTGCCGACTTCTC 60.094 50.000 0.00 0.00 31.55 2.87
471 475 3.118775 TCGTTAGCTGCTCATGTTGGTAT 60.119 43.478 4.91 0.00 0.00 2.73
482 486 1.443872 CGGTTCGTCGTTAGCTGCT 60.444 57.895 7.57 7.57 0.00 4.24
483 487 1.443194 TCGGTTCGTCGTTAGCTGC 60.443 57.895 0.00 0.00 0.00 5.25
484 488 1.069378 GGTCGGTTCGTCGTTAGCTG 61.069 60.000 0.00 0.00 0.00 4.24
514 518 3.768632 CGAAGCTCCGTAGTGCAC 58.231 61.111 9.40 9.40 34.89 4.57
556 560 5.077134 TGGACTGCGATATGATAATCTGG 57.923 43.478 0.00 0.00 0.00 3.86
559 563 5.233902 GCTGATGGACTGCGATATGATAATC 59.766 44.000 0.00 0.00 34.13 1.75
583 597 2.502213 TCGTATGCGTGTTATCCTGG 57.498 50.000 2.37 0.00 39.49 4.45
588 602 3.499048 GATCGGATCGTATGCGTGTTAT 58.501 45.455 2.37 0.00 44.82 1.89
600 614 2.064762 GCTGATGAAAGGATCGGATCG 58.935 52.381 11.62 0.00 31.19 3.69
601 615 2.224378 TGGCTGATGAAAGGATCGGATC 60.224 50.000 9.54 9.54 31.19 3.36
602 616 1.770658 TGGCTGATGAAAGGATCGGAT 59.229 47.619 0.00 0.00 31.19 4.18
603 617 1.203237 TGGCTGATGAAAGGATCGGA 58.797 50.000 0.00 0.00 31.19 4.55
604 618 1.672881 GTTGGCTGATGAAAGGATCGG 59.327 52.381 0.00 0.00 32.57 4.18
612 626 4.350368 TGTAACTCTGTTGGCTGATGAA 57.650 40.909 0.00 0.00 0.00 2.57
623 637 3.231965 CGACGACGATTTGTAACTCTGT 58.768 45.455 0.00 0.00 42.66 3.41
627 641 3.549299 AGACGACGACGATTTGTAACT 57.451 42.857 15.32 0.00 42.66 2.24
628 642 3.665409 TGAAGACGACGACGATTTGTAAC 59.335 43.478 15.32 0.00 42.66 2.50
629 643 3.887741 TGAAGACGACGACGATTTGTAA 58.112 40.909 15.32 0.00 42.66 2.41
630 644 3.485633 CTGAAGACGACGACGATTTGTA 58.514 45.455 15.32 0.00 42.66 2.41
632 646 1.057847 GCTGAAGACGACGACGATTTG 59.942 52.381 15.32 6.86 42.66 2.32
634 648 0.793478 CGCTGAAGACGACGACGATT 60.793 55.000 15.32 8.19 42.66 3.34
635 649 1.226046 CGCTGAAGACGACGACGAT 60.226 57.895 15.32 0.00 42.66 3.73
636 650 2.172659 CGCTGAAGACGACGACGA 59.827 61.111 15.32 0.00 42.66 4.20
637 651 3.524759 GCGCTGAAGACGACGACG 61.525 66.667 5.58 5.58 45.75 5.12
638 652 2.428569 TGCGCTGAAGACGACGAC 60.429 61.111 9.73 0.00 0.00 4.34
656 670 8.925161 ATGTATTCATGTTAATTGGTTTTCGG 57.075 30.769 0.00 0.00 32.51 4.30
670 684 9.230122 TGCCATTATCGATTAATGTATTCATGT 57.770 29.630 1.71 0.00 43.83 3.21
674 688 7.148255 TGCCTGCCATTATCGATTAATGTATTC 60.148 37.037 1.71 2.65 43.83 1.75
689 703 2.695759 CGCGGTTTGCCTGCCATTA 61.696 57.895 0.00 0.00 42.08 1.90
711 725 2.803956 TCTACGTGATGGGTGAGAAGT 58.196 47.619 0.00 0.00 0.00 3.01
820 857 1.310904 GCAACGGGTTTTGACTGGTA 58.689 50.000 0.00 0.00 0.00 3.25
853 890 5.304871 TCGTGGTGTATATTTATGCAGGGTA 59.695 40.000 0.00 0.00 0.00 3.69
855 892 4.637276 TCGTGGTGTATATTTATGCAGGG 58.363 43.478 0.00 0.00 0.00 4.45
953 990 0.381801 CAAGCTCCAAACAAGCACGT 59.618 50.000 0.00 0.00 42.35 4.49
1263 1300 4.065423 ACGAATGCACAGAACATTTACG 57.935 40.909 0.00 0.00 37.85 3.18
1278 1315 7.069569 CAGTAGTAACAAAGAACCAACGAATG 58.930 38.462 0.00 0.00 0.00 2.67
1294 1331 7.793902 ACAACAATCAAATCGACAGTAGTAAC 58.206 34.615 0.00 0.00 0.00 2.50
1295 1332 7.956420 ACAACAATCAAATCGACAGTAGTAA 57.044 32.000 0.00 0.00 0.00 2.24
1364 1445 8.786898 GCTGCATCCACTTAATAATCAAGATAA 58.213 33.333 0.00 0.00 0.00 1.75
1365 1446 7.391554 GGCTGCATCCACTTAATAATCAAGATA 59.608 37.037 0.55 0.00 0.00 1.98
1366 1447 6.208204 GGCTGCATCCACTTAATAATCAAGAT 59.792 38.462 0.55 0.00 0.00 2.40
1367 1448 5.532406 GGCTGCATCCACTTAATAATCAAGA 59.468 40.000 0.55 0.00 0.00 3.02
1368 1449 5.561532 CGGCTGCATCCACTTAATAATCAAG 60.562 44.000 7.47 0.00 0.00 3.02
1369 1450 4.275689 CGGCTGCATCCACTTAATAATCAA 59.724 41.667 7.47 0.00 0.00 2.57
1370 1451 3.814842 CGGCTGCATCCACTTAATAATCA 59.185 43.478 7.47 0.00 0.00 2.57
1371 1452 3.815401 ACGGCTGCATCCACTTAATAATC 59.185 43.478 7.47 0.00 0.00 1.75
1372 1453 3.820557 ACGGCTGCATCCACTTAATAAT 58.179 40.909 7.47 0.00 0.00 1.28
1373 1454 3.275617 ACGGCTGCATCCACTTAATAA 57.724 42.857 7.47 0.00 0.00 1.40
1374 1455 3.202906 GAACGGCTGCATCCACTTAATA 58.797 45.455 7.47 0.00 0.00 0.98
1375 1456 2.017049 GAACGGCTGCATCCACTTAAT 58.983 47.619 7.47 0.00 0.00 1.40
1376 1457 1.271108 TGAACGGCTGCATCCACTTAA 60.271 47.619 7.47 0.00 0.00 1.85
1377 1458 0.323302 TGAACGGCTGCATCCACTTA 59.677 50.000 7.47 0.00 0.00 2.24
1378 1459 0.322816 ATGAACGGCTGCATCCACTT 60.323 50.000 7.47 0.00 0.00 3.16
1379 1460 0.541392 TATGAACGGCTGCATCCACT 59.459 50.000 7.47 0.00 0.00 4.00
1380 1461 1.597742 ATATGAACGGCTGCATCCAC 58.402 50.000 7.47 0.00 0.00 4.02
1381 1462 1.948834 CAATATGAACGGCTGCATCCA 59.051 47.619 7.47 0.00 0.00 3.41
1382 1463 2.221169 TCAATATGAACGGCTGCATCC 58.779 47.619 0.50 0.00 0.00 3.51
1383 1464 3.059325 GTCTCAATATGAACGGCTGCATC 60.059 47.826 0.50 0.00 0.00 3.91
1384 1465 2.874701 GTCTCAATATGAACGGCTGCAT 59.125 45.455 0.50 0.00 0.00 3.96
1385 1466 2.279741 GTCTCAATATGAACGGCTGCA 58.720 47.619 0.50 0.00 0.00 4.41
1386 1467 2.030946 GTGTCTCAATATGAACGGCTGC 59.969 50.000 0.00 0.00 0.00 5.25
1387 1468 3.308053 CAGTGTCTCAATATGAACGGCTG 59.692 47.826 0.00 0.00 0.00 4.85
1388 1469 3.055819 ACAGTGTCTCAATATGAACGGCT 60.056 43.478 0.00 0.00 0.00 5.52
1389 1470 3.262420 ACAGTGTCTCAATATGAACGGC 58.738 45.455 0.00 0.00 0.00 5.68
1390 1471 8.082242 TCATATACAGTGTCTCAATATGAACGG 58.918 37.037 18.08 0.39 36.88 4.44
1391 1472 9.122613 CTCATATACAGTGTCTCAATATGAACG 57.877 37.037 19.71 10.75 38.43 3.95
1416 1497 3.740452 CGAGAACAGATCATGCACATCCT 60.740 47.826 0.00 0.00 0.00 3.24
1448 1529 4.118410 CAATCACATGAGCTGTCTCTACC 58.882 47.826 0.00 0.00 40.03 3.18
1460 1541 0.518195 CACACTGCGCAATCACATGA 59.482 50.000 13.05 0.00 0.00 3.07
1470 1551 0.516877 TGATGCTAAACACACTGCGC 59.483 50.000 0.00 0.00 0.00 6.09
1495 1576 6.064060 ACTATGTTGGCGTGGTAGTAGTATA 58.936 40.000 0.00 0.00 0.00 1.47
1507 1588 8.516234 TGTTATGAAAATAAACTATGTTGGCGT 58.484 29.630 0.00 0.00 0.00 5.68
1562 1918 6.833041 TCTTTACGGAGGGAATATGCATTTA 58.167 36.000 3.54 0.00 0.00 1.40
1567 1923 7.923414 ATATTTCTTTACGGAGGGAATATGC 57.077 36.000 0.00 0.00 0.00 3.14
1602 2171 8.585881 GCTAAGATATTTACATGTACTCCCTCA 58.414 37.037 4.68 0.00 0.00 3.86
1630 2199 9.693739 TGCAGATTTACCCTCTTTCAATATTAA 57.306 29.630 0.00 0.00 0.00 1.40
1631 2200 9.342308 CTGCAGATTTACCCTCTTTCAATATTA 57.658 33.333 8.42 0.00 0.00 0.98
1632 2201 7.836183 ACTGCAGATTTACCCTCTTTCAATATT 59.164 33.333 23.35 0.00 0.00 1.28
1633 2202 7.349598 ACTGCAGATTTACCCTCTTTCAATAT 58.650 34.615 23.35 0.00 0.00 1.28
1634 2203 6.721318 ACTGCAGATTTACCCTCTTTCAATA 58.279 36.000 23.35 0.00 0.00 1.90
1635 2204 5.574188 ACTGCAGATTTACCCTCTTTCAAT 58.426 37.500 23.35 0.00 0.00 2.57
1636 2205 4.985538 ACTGCAGATTTACCCTCTTTCAA 58.014 39.130 23.35 0.00 0.00 2.69
1637 2206 4.565652 GGACTGCAGATTTACCCTCTTTCA 60.566 45.833 23.35 0.00 0.00 2.69
1638 2207 3.942115 GGACTGCAGATTTACCCTCTTTC 59.058 47.826 23.35 1.82 0.00 2.62
1639 2208 3.330701 TGGACTGCAGATTTACCCTCTTT 59.669 43.478 23.35 0.00 0.00 2.52
1640 2209 2.912956 TGGACTGCAGATTTACCCTCTT 59.087 45.455 23.35 0.00 0.00 2.85
1641 2210 2.551270 TGGACTGCAGATTTACCCTCT 58.449 47.619 23.35 0.00 0.00 3.69
1642 2211 3.118261 TGATGGACTGCAGATTTACCCTC 60.118 47.826 23.35 15.92 0.00 4.30
1643 2212 2.846206 TGATGGACTGCAGATTTACCCT 59.154 45.455 23.35 8.21 0.00 4.34
1644 2213 3.281727 TGATGGACTGCAGATTTACCC 57.718 47.619 23.35 11.25 0.00 3.69
1645 2214 4.712476 AGATGATGGACTGCAGATTTACC 58.288 43.478 23.35 14.82 0.00 2.85
1646 2215 4.447054 CGAGATGATGGACTGCAGATTTAC 59.553 45.833 23.35 9.18 0.00 2.01
1647 2216 4.342092 TCGAGATGATGGACTGCAGATTTA 59.658 41.667 23.35 3.86 0.00 1.40
1648 2217 3.133542 TCGAGATGATGGACTGCAGATTT 59.866 43.478 23.35 0.00 0.00 2.17
1649 2218 2.697229 TCGAGATGATGGACTGCAGATT 59.303 45.455 23.35 0.00 0.00 2.40
1698 2267 1.631405 TCTTGAAGCAAATGGGTGGG 58.369 50.000 0.00 0.00 0.00 4.61
1753 2322 2.519949 TGCATGGACCCAGTGCAA 59.480 55.556 17.52 7.22 44.99 4.08
1798 2369 4.675303 TGGAGGAGGGGTGGGTGG 62.675 72.222 0.00 0.00 0.00 4.61
1889 2460 6.698107 CAACGAACATGAATATGCAAAATGG 58.302 36.000 0.00 0.00 37.85 3.16
1892 2463 5.225642 TGCAACGAACATGAATATGCAAAA 58.774 33.333 0.00 0.00 39.15 2.44
2072 2675 1.743394 GGGGGCTCTAACATTTTGACG 59.257 52.381 0.00 0.00 0.00 4.35
2123 2727 7.750229 ACTGCTGAAACTCAATAGAAATGAA 57.250 32.000 0.00 0.00 0.00 2.57
2125 2729 7.587629 TCAACTGCTGAAACTCAATAGAAATG 58.412 34.615 0.00 0.00 0.00 2.32
2154 2774 9.592720 GTTTTGACGCATTTAAAATTTTGCTAT 57.407 25.926 13.76 0.44 32.97 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.