Multiple sequence alignment - TraesCS3D01G320400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G320400 chr3D 100.000 2738 0 0 1 2738 433555373 433552636 0.000000e+00 5057.0
1 TraesCS3D01G320400 chr3B 90.548 1587 76 26 337 1883 566642180 566640628 0.000000e+00 2032.0
2 TraesCS3D01G320400 chr3B 88.630 343 25 8 2036 2373 566640292 566639959 3.280000e-109 405.0
3 TraesCS3D01G320400 chr3B 86.792 265 16 9 1 261 566643340 566643091 7.470000e-71 278.0
4 TraesCS3D01G320400 chr3A 87.367 1686 76 56 1 1647 572119887 572118300 0.000000e+00 1807.0
5 TraesCS3D01G320400 chr3A 90.074 544 37 10 1883 2426 572117939 572117413 0.000000e+00 689.0
6 TraesCS3D01G320400 chr3A 91.121 214 8 3 1646 1853 572118219 572118011 2.080000e-71 279.0
7 TraesCS3D01G320400 chr3A 100.000 38 0 0 2405 2442 700851633 700851596 1.360000e-08 71.3
8 TraesCS3D01G320400 chr3A 97.561 41 0 1 1892 1932 572118014 572117975 4.890000e-08 69.4
9 TraesCS3D01G320400 chr5A 97.674 43 1 0 2400 2442 102604460 102604502 1.050000e-09 75.0
10 TraesCS3D01G320400 chr4B 97.619 42 1 0 2401 2442 147294925 147294966 3.780000e-09 73.1
11 TraesCS3D01G320400 chr7A 93.617 47 2 1 2396 2442 138269374 138269329 4.890000e-08 69.4
12 TraesCS3D01G320400 chr7A 93.617 47 2 1 2396 2442 352824455 352824500 4.890000e-08 69.4
13 TraesCS3D01G320400 chr4D 93.617 47 2 1 2396 2442 161323284 161323239 4.890000e-08 69.4
14 TraesCS3D01G320400 chr2B 93.617 47 1 1 2396 2442 464142387 464142431 4.890000e-08 69.4
15 TraesCS3D01G320400 chr6A 89.286 56 3 3 2395 2450 260524133 260524081 1.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G320400 chr3D 433552636 433555373 2737 True 5057.0 5057 100.000000 1 2738 1 chr3D.!!$R1 2737
1 TraesCS3D01G320400 chr3B 566639959 566643340 3381 True 905.0 2032 88.656667 1 2373 3 chr3B.!!$R1 2372
2 TraesCS3D01G320400 chr3A 572117413 572119887 2474 True 711.1 1807 91.530750 1 2426 4 chr3A.!!$R2 2425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 1609 0.250901 GTGAGCTGCAGGGGAAAGAA 60.251 55.0 17.12 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 3944 0.036875 CAGTGGTCAGGAAGAACCCC 59.963 60.0 0.0 0.0 40.05 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.073722 CCAGACAGCTTTCCTGCCA 59.926 57.895 0.00 0.00 45.78 4.92
93 98 1.914634 CGGATATAGCTCGCATGTCC 58.085 55.000 0.00 0.00 32.04 4.02
94 99 1.469940 CGGATATAGCTCGCATGTCCC 60.470 57.143 5.45 0.00 31.76 4.46
95 100 1.550524 GGATATAGCTCGCATGTCCCA 59.449 52.381 0.00 0.00 29.78 4.37
96 101 2.169352 GGATATAGCTCGCATGTCCCAT 59.831 50.000 0.00 0.00 29.78 4.00
128 133 1.635663 CCCGGAGTGCGATTTCACAC 61.636 60.000 5.27 0.00 39.35 3.82
169 174 0.319083 TTCTTCGAGGCTACGGCAAA 59.681 50.000 6.53 0.00 40.87 3.68
170 175 0.535335 TCTTCGAGGCTACGGCAAAT 59.465 50.000 6.53 0.00 40.87 2.32
185 190 3.671971 CGGCAAATATTTCCACTTGCGAA 60.672 43.478 0.00 0.00 44.03 4.70
187 192 3.300590 GCAAATATTTCCACTTGCGAACG 59.699 43.478 0.00 0.00 35.30 3.95
188 193 4.472286 CAAATATTTCCACTTGCGAACGT 58.528 39.130 0.00 0.00 0.00 3.99
189 194 5.623335 CAAATATTTCCACTTGCGAACGTA 58.377 37.500 0.00 0.00 0.00 3.57
190 195 6.255215 CAAATATTTCCACTTGCGAACGTAT 58.745 36.000 0.00 0.00 0.00 3.06
191 196 6.431198 AATATTTCCACTTGCGAACGTATT 57.569 33.333 0.00 0.00 0.00 1.89
192 197 7.542534 AATATTTCCACTTGCGAACGTATTA 57.457 32.000 0.00 0.00 0.00 0.98
193 198 4.650545 TTTCCACTTGCGAACGTATTAC 57.349 40.909 0.00 0.00 0.00 1.89
221 226 2.723322 TTTGCATCTCCAGCTATGCT 57.277 45.000 17.68 0.00 46.87 3.79
225 230 0.669932 CATCTCCAGCTATGCTCGGC 60.670 60.000 0.00 0.00 36.40 5.54
263 268 2.560504 TGGCCGTTGCATCAAGTATAG 58.439 47.619 0.00 0.00 40.13 1.31
264 269 2.093181 TGGCCGTTGCATCAAGTATAGT 60.093 45.455 0.00 0.00 40.13 2.12
265 270 2.287915 GGCCGTTGCATCAAGTATAGTG 59.712 50.000 0.00 0.00 40.13 2.74
267 272 3.809832 GCCGTTGCATCAAGTATAGTGAT 59.190 43.478 0.00 0.00 36.11 3.06
269 274 5.741425 CCGTTGCATCAAGTATAGTGATTG 58.259 41.667 0.00 0.00 33.37 2.67
270 275 5.294306 CCGTTGCATCAAGTATAGTGATTGT 59.706 40.000 0.00 0.00 33.37 2.71
272 277 6.684131 CGTTGCATCAAGTATAGTGATTGTTG 59.316 38.462 0.00 0.00 33.37 3.33
276 281 7.607607 TGCATCAAGTATAGTGATTGTTGTTCT 59.392 33.333 0.00 0.00 33.37 3.01
278 283 9.376075 CATCAAGTATAGTGATTGTTGTTCTCT 57.624 33.333 0.00 0.00 33.37 3.10
279 284 8.988064 TCAAGTATAGTGATTGTTGTTCTCTC 57.012 34.615 0.00 0.00 0.00 3.20
280 285 8.585018 TCAAGTATAGTGATTGTTGTTCTCTCA 58.415 33.333 0.00 0.00 0.00 3.27
326 1166 9.268268 TGTTCAAGATAATTAACTCGAACTGTT 57.732 29.630 20.63 0.00 34.15 3.16
574 1426 3.380320 TGTCATCTGTCCGACACGAATAT 59.620 43.478 0.00 0.00 37.23 1.28
749 1606 2.436109 GGTGAGCTGCAGGGGAAA 59.564 61.111 17.12 0.00 0.00 3.13
750 1607 1.676967 GGTGAGCTGCAGGGGAAAG 60.677 63.158 17.12 0.00 0.00 2.62
751 1608 1.376466 GTGAGCTGCAGGGGAAAGA 59.624 57.895 17.12 0.00 0.00 2.52
752 1609 0.250901 GTGAGCTGCAGGGGAAAGAA 60.251 55.000 17.12 0.00 0.00 2.52
753 1610 0.700564 TGAGCTGCAGGGGAAAGAAT 59.299 50.000 17.12 0.00 0.00 2.40
754 1611 1.340405 TGAGCTGCAGGGGAAAGAATC 60.340 52.381 17.12 0.00 0.00 2.52
779 1636 2.742710 GAAAAAGCCGCGTTCCCACC 62.743 60.000 4.92 0.00 0.00 4.61
838 1706 2.989824 CTCGTCCCACCCACTCGT 60.990 66.667 0.00 0.00 0.00 4.18
873 1741 0.663568 CGCCCACGTAGGATTCGATC 60.664 60.000 3.45 0.00 41.22 3.69
874 1742 3.923111 CGCCCACGTAGGATTCGATCC 62.923 61.905 3.45 5.94 41.41 3.36
975 1843 2.022195 GCCTCCGACTATATATCCGCA 58.978 52.381 0.00 0.00 0.00 5.69
1032 1900 7.229907 ACCTAATCTCTCTCTCTAATCCGAAAC 59.770 40.741 0.00 0.00 0.00 2.78
1098 1966 0.937304 ACAACTACAGCAAGCACACG 59.063 50.000 0.00 0.00 0.00 4.49
1143 2015 5.773575 TGCAGTTCTACACTTCTACTTCTG 58.226 41.667 0.00 0.00 30.92 3.02
1181 2053 4.722700 ATCACGCACCAGGCCACC 62.723 66.667 5.01 0.00 40.31 4.61
1241 2113 3.379445 GACGAGGACGAGGGGCAA 61.379 66.667 0.00 0.00 42.66 4.52
1281 2153 1.591703 GTCAGCGAGGTGACCATCA 59.408 57.895 20.87 0.00 40.96 3.07
1371 2255 4.116328 CGGCGTCGGAGCTTCTGA 62.116 66.667 0.00 0.00 37.29 3.27
1539 2423 0.673956 GGTTTGGGCTTCTCGTCTCC 60.674 60.000 0.00 0.00 0.00 3.71
1565 2449 2.307309 TTGCTTCTTCGCCGTGTCG 61.307 57.895 0.00 0.00 0.00 4.35
1566 2450 2.430244 GCTTCTTCGCCGTGTCGA 60.430 61.111 0.00 0.00 36.60 4.20
1567 2451 2.717809 GCTTCTTCGCCGTGTCGAC 61.718 63.158 9.11 9.11 38.30 4.20
1568 2452 2.049802 TTCTTCGCCGTGTCGACC 60.050 61.111 14.12 3.43 38.30 4.79
1569 2453 2.473664 CTTCTTCGCCGTGTCGACCT 62.474 60.000 14.12 0.00 38.30 3.85
1572 2456 1.886861 CTTCGCCGTGTCGACCTTTG 61.887 60.000 14.12 0.00 38.30 2.77
1574 2458 2.280592 GCCGTGTCGACCTTTGGT 60.281 61.111 14.12 0.00 39.44 3.67
1575 2459 1.005867 GCCGTGTCGACCTTTGGTA 60.006 57.895 14.12 0.00 35.25 3.25
1576 2460 1.012486 GCCGTGTCGACCTTTGGTAG 61.012 60.000 14.12 0.00 35.25 3.18
1577 2461 0.599558 CCGTGTCGACCTTTGGTAGA 59.400 55.000 14.12 0.00 35.25 2.59
1578 2462 1.000060 CCGTGTCGACCTTTGGTAGAA 60.000 52.381 14.12 0.00 38.92 2.10
1579 2463 2.056577 CGTGTCGACCTTTGGTAGAAC 58.943 52.381 14.12 0.00 38.92 3.01
1592 2476 6.016276 CCTTTGGTAGAACACACAGCTTTTAT 60.016 38.462 0.00 0.00 0.00 1.40
1608 2492 3.460857 TTTATGCGGCCTTTTTGTGTT 57.539 38.095 0.00 0.00 0.00 3.32
1609 2493 4.585955 TTTATGCGGCCTTTTTGTGTTA 57.414 36.364 0.00 0.00 0.00 2.41
1610 2494 4.792521 TTATGCGGCCTTTTTGTGTTAT 57.207 36.364 0.00 0.00 0.00 1.89
1683 2664 9.952030 TGGTGATGTAAATTGTAAAGTAGATCA 57.048 29.630 0.00 0.00 31.75 2.92
1739 2726 4.540824 GAACAAACCAAGCATTCTCAGTC 58.459 43.478 0.00 0.00 0.00 3.51
1756 2743 0.179205 GTCGATCTGCTGCTTTGTGC 60.179 55.000 0.00 0.00 43.25 4.57
1758 2745 1.513586 GATCTGCTGCTTTGTGCGC 60.514 57.895 0.00 0.00 46.63 6.09
1774 2767 1.285641 CGCGGAACAAACCAAGCAT 59.714 52.632 0.00 0.00 0.00 3.79
1788 2781 5.796424 ACCAAGCATTTTTCACTTGATCT 57.204 34.783 3.65 0.00 42.71 2.75
1797 2790 2.756840 TCACTTGATCTGCTGTCCAG 57.243 50.000 0.00 0.00 43.17 3.86
1858 2877 3.721087 AGAAACCTACAAGGGACCATG 57.279 47.619 0.00 0.00 40.58 3.66
1892 2943 1.309950 CAGATGAGAATGCCCTGCAG 58.690 55.000 6.78 6.78 43.65 4.41
1920 2971 3.902881 AAGCAATGTTGGTTGGTTGAA 57.097 38.095 9.16 0.00 46.03 2.69
1932 2983 0.178992 TGGTTGAACCCAGAAGCCAG 60.179 55.000 12.53 0.00 37.50 4.85
1946 2997 2.789409 AGCCAGGTTATGTTCCACTC 57.211 50.000 0.00 0.00 0.00 3.51
1986 3043 7.716799 AAAAGAATCCAGGTTATGCAATGTA 57.283 32.000 0.00 0.00 0.00 2.29
2019 3076 0.618458 GGGTGTGATCTGCCCAGTAA 59.382 55.000 12.77 0.00 41.93 2.24
2080 3345 4.321230 GCATTTTCTTTCCTCCACGTTCAT 60.321 41.667 0.00 0.00 0.00 2.57
2105 3370 2.270047 CCGTGCATTAAAAATGGGCAG 58.730 47.619 0.00 0.00 34.78 4.85
2160 3426 8.651588 CATGAAAGACCTGATTCGCTATTATAC 58.348 37.037 0.00 0.00 0.00 1.47
2258 3524 2.224695 TGGTAGAGTGGACTTCTCGACA 60.225 50.000 8.02 0.00 38.59 4.35
2318 3584 7.001674 ACACAATCAAGGAGGTTACAACAATA 58.998 34.615 0.00 0.00 0.00 1.90
2319 3585 7.504238 ACACAATCAAGGAGGTTACAACAATAA 59.496 33.333 0.00 0.00 0.00 1.40
2379 3647 4.893524 GGGCCAAGTGCTATTAAAATAGGT 59.106 41.667 4.39 0.00 39.00 3.08
2381 3649 6.127168 GGGCCAAGTGCTATTAAAATAGGTTT 60.127 38.462 4.39 0.00 39.00 3.27
2382 3650 7.068962 GGGCCAAGTGCTATTAAAATAGGTTTA 59.931 37.037 4.39 0.00 39.00 2.01
2414 3682 4.505324 ACCTTAAGCAAATACTCCCTCC 57.495 45.455 0.00 0.00 0.00 4.30
2418 3686 2.693267 AGCAAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
2420 3688 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2426 3694 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
2427 3695 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
2428 3696 7.957992 ATACTCCCTCCGTTCCTAAATATAG 57.042 40.000 0.00 0.00 0.00 1.31
2447 3715 5.820404 ATAGGGTGTATAGGTTTACCAGC 57.180 43.478 1.13 0.00 38.89 4.85
2448 3716 3.456842 AGGGTGTATAGGTTTACCAGCA 58.543 45.455 1.13 0.00 38.89 4.41
2449 3717 3.199289 AGGGTGTATAGGTTTACCAGCAC 59.801 47.826 1.13 4.59 38.89 4.40
2450 3718 3.538591 GGTGTATAGGTTTACCAGCACC 58.461 50.000 13.96 13.96 37.89 5.01
2451 3719 3.054948 GGTGTATAGGTTTACCAGCACCA 60.055 47.826 19.58 3.24 41.09 4.17
2452 3720 3.937079 GTGTATAGGTTTACCAGCACCAC 59.063 47.826 1.13 0.00 38.89 4.16
2453 3721 3.841845 TGTATAGGTTTACCAGCACCACT 59.158 43.478 1.13 0.00 38.89 4.00
2454 3722 3.629142 ATAGGTTTACCAGCACCACTC 57.371 47.619 1.13 0.00 38.89 3.51
2455 3723 1.136828 AGGTTTACCAGCACCACTCA 58.863 50.000 1.13 0.00 38.89 3.41
2456 3724 1.202770 AGGTTTACCAGCACCACTCAC 60.203 52.381 1.13 0.00 38.89 3.51
2457 3725 1.476110 GGTTTACCAGCACCACTCACA 60.476 52.381 0.00 0.00 35.64 3.58
2458 3726 2.504367 GTTTACCAGCACCACTCACAT 58.496 47.619 0.00 0.00 0.00 3.21
2459 3727 2.183478 TTACCAGCACCACTCACATG 57.817 50.000 0.00 0.00 0.00 3.21
2460 3728 0.324614 TACCAGCACCACTCACATGG 59.675 55.000 0.00 0.00 46.10 3.66
2461 3729 1.676635 CCAGCACCACTCACATGGG 60.677 63.158 0.00 0.00 44.81 4.00
2462 3730 1.676635 CAGCACCACTCACATGGGG 60.677 63.158 0.00 0.00 46.97 4.96
2464 3732 2.361610 CACCACTCACATGGGGCC 60.362 66.667 0.00 0.00 44.81 5.80
2465 3733 4.033776 ACCACTCACATGGGGCCG 62.034 66.667 0.00 0.00 44.81 6.13
2466 3734 3.716195 CCACTCACATGGGGCCGA 61.716 66.667 0.00 0.00 35.95 5.54
2467 3735 2.124983 CACTCACATGGGGCCGAG 60.125 66.667 0.00 0.00 0.00 4.63
2468 3736 2.284625 ACTCACATGGGGCCGAGA 60.285 61.111 11.68 0.00 0.00 4.04
2469 3737 2.187946 CTCACATGGGGCCGAGAC 59.812 66.667 0.00 0.00 0.00 3.36
2470 3738 3.391665 CTCACATGGGGCCGAGACC 62.392 68.421 0.00 0.00 0.00 3.85
2471 3739 3.716195 CACATGGGGCCGAGACCA 61.716 66.667 0.48 0.48 41.76 4.02
2474 3742 2.692368 ATGGGGCCGAGACCATGT 60.692 61.111 10.19 0.00 45.40 3.21
2475 3743 1.383943 ATGGGGCCGAGACCATGTA 60.384 57.895 10.19 0.00 45.40 2.29
2476 3744 1.696097 ATGGGGCCGAGACCATGTAC 61.696 60.000 10.19 0.00 45.40 2.90
2477 3745 2.363975 GGGGCCGAGACCATGTACA 61.364 63.158 0.00 0.00 27.52 2.90
2478 3746 1.153429 GGGCCGAGACCATGTACAC 60.153 63.158 0.00 0.00 0.00 2.90
2479 3747 1.594833 GGCCGAGACCATGTACACA 59.405 57.895 0.00 0.00 0.00 3.72
2480 3748 0.178068 GGCCGAGACCATGTACACAT 59.822 55.000 0.00 0.00 36.96 3.21
2489 3757 1.931906 CATGTACACATGCTCGAGCT 58.068 50.000 35.27 19.14 45.92 4.09
2490 3758 1.857217 CATGTACACATGCTCGAGCTC 59.143 52.381 35.27 17.32 45.92 4.09
2491 3759 0.173481 TGTACACATGCTCGAGCTCC 59.827 55.000 35.27 16.25 42.66 4.70
2492 3760 0.528684 GTACACATGCTCGAGCTCCC 60.529 60.000 35.27 14.03 42.66 4.30
2493 3761 0.970427 TACACATGCTCGAGCTCCCA 60.970 55.000 35.27 17.99 42.66 4.37
2494 3762 1.145598 CACATGCTCGAGCTCCCAT 59.854 57.895 35.27 19.47 42.66 4.00
2495 3763 1.145598 ACATGCTCGAGCTCCCATG 59.854 57.895 35.27 29.82 42.66 3.66
2496 3764 1.332889 ACATGCTCGAGCTCCCATGA 61.333 55.000 35.27 16.07 42.66 3.07
2497 3765 0.879400 CATGCTCGAGCTCCCATGAC 60.879 60.000 35.27 6.46 42.66 3.06
2498 3766 1.332889 ATGCTCGAGCTCCCATGACA 61.333 55.000 35.27 14.55 42.66 3.58
2499 3767 1.520342 GCTCGAGCTCCCATGACAC 60.520 63.158 29.88 0.00 38.21 3.67
2500 3768 1.893062 CTCGAGCTCCCATGACACA 59.107 57.895 8.47 0.00 0.00 3.72
2501 3769 0.463204 CTCGAGCTCCCATGACACAT 59.537 55.000 8.47 0.00 0.00 3.21
2502 3770 1.683385 CTCGAGCTCCCATGACACATA 59.317 52.381 8.47 0.00 0.00 2.29
2503 3771 1.683385 TCGAGCTCCCATGACACATAG 59.317 52.381 8.47 0.00 0.00 2.23
2504 3772 1.683385 CGAGCTCCCATGACACATAGA 59.317 52.381 8.47 0.00 0.00 1.98
2505 3773 2.101415 CGAGCTCCCATGACACATAGAA 59.899 50.000 8.47 0.00 0.00 2.10
2506 3774 3.462021 GAGCTCCCATGACACATAGAAC 58.538 50.000 0.87 0.00 0.00 3.01
2507 3775 2.171448 AGCTCCCATGACACATAGAACC 59.829 50.000 0.00 0.00 0.00 3.62
2508 3776 2.092968 GCTCCCATGACACATAGAACCA 60.093 50.000 0.00 0.00 0.00 3.67
2509 3777 3.622206 GCTCCCATGACACATAGAACCAA 60.622 47.826 0.00 0.00 0.00 3.67
2510 3778 4.588899 CTCCCATGACACATAGAACCAAA 58.411 43.478 0.00 0.00 0.00 3.28
2511 3779 4.991776 TCCCATGACACATAGAACCAAAA 58.008 39.130 0.00 0.00 0.00 2.44
2512 3780 4.764823 TCCCATGACACATAGAACCAAAAC 59.235 41.667 0.00 0.00 0.00 2.43
2513 3781 4.766891 CCCATGACACATAGAACCAAAACT 59.233 41.667 0.00 0.00 0.00 2.66
2514 3782 5.335897 CCCATGACACATAGAACCAAAACTG 60.336 44.000 0.00 0.00 0.00 3.16
2515 3783 5.473162 CCATGACACATAGAACCAAAACTGA 59.527 40.000 0.00 0.00 0.00 3.41
2516 3784 6.016360 CCATGACACATAGAACCAAAACTGAA 60.016 38.462 0.00 0.00 0.00 3.02
2517 3785 7.424803 CATGACACATAGAACCAAAACTGAAA 58.575 34.615 0.00 0.00 0.00 2.69
2518 3786 7.026631 TGACACATAGAACCAAAACTGAAAG 57.973 36.000 0.00 0.00 42.29 2.62
2538 3806 8.908786 TGAAAGTGATTATAGTTCCATCATCC 57.091 34.615 0.00 0.00 29.78 3.51
2539 3807 8.493607 TGAAAGTGATTATAGTTCCATCATCCA 58.506 33.333 0.00 0.00 29.78 3.41
2540 3808 8.915057 AAAGTGATTATAGTTCCATCATCCAG 57.085 34.615 0.00 0.00 29.78 3.86
2541 3809 7.862274 AGTGATTATAGTTCCATCATCCAGA 57.138 36.000 0.00 0.00 29.78 3.86
2542 3810 7.905265 AGTGATTATAGTTCCATCATCCAGAG 58.095 38.462 0.00 0.00 29.78 3.35
2543 3811 7.038445 AGTGATTATAGTTCCATCATCCAGAGG 60.038 40.741 0.00 0.00 29.78 3.69
2544 3812 7.018769 TGATTATAGTTCCATCATCCAGAGGA 58.981 38.462 0.00 0.00 35.55 3.71
2545 3813 6.924913 TTATAGTTCCATCATCCAGAGGAG 57.075 41.667 0.00 0.00 34.05 3.69
2546 3814 1.767681 AGTTCCATCATCCAGAGGAGC 59.232 52.381 0.00 0.00 34.05 4.70
2547 3815 1.487976 GTTCCATCATCCAGAGGAGCA 59.512 52.381 0.00 0.00 34.05 4.26
2548 3816 1.126488 TCCATCATCCAGAGGAGCAC 58.874 55.000 0.00 0.00 34.05 4.40
2549 3817 0.835276 CCATCATCCAGAGGAGCACA 59.165 55.000 0.00 0.00 34.05 4.57
2550 3818 1.474677 CCATCATCCAGAGGAGCACAC 60.475 57.143 0.00 0.00 34.05 3.82
2551 3819 1.208776 CATCATCCAGAGGAGCACACA 59.791 52.381 0.00 0.00 34.05 3.72
2552 3820 1.351076 TCATCCAGAGGAGCACACAA 58.649 50.000 0.00 0.00 34.05 3.33
2553 3821 1.911357 TCATCCAGAGGAGCACACAAT 59.089 47.619 0.00 0.00 34.05 2.71
2554 3822 3.106827 TCATCCAGAGGAGCACACAATA 58.893 45.455 0.00 0.00 34.05 1.90
2555 3823 3.133542 TCATCCAGAGGAGCACACAATAG 59.866 47.826 0.00 0.00 34.05 1.73
2556 3824 1.208052 TCCAGAGGAGCACACAATAGC 59.792 52.381 0.00 0.00 0.00 2.97
2557 3825 1.065926 CCAGAGGAGCACACAATAGCA 60.066 52.381 0.00 0.00 0.00 3.49
2558 3826 2.616256 CCAGAGGAGCACACAATAGCAA 60.616 50.000 0.00 0.00 0.00 3.91
2559 3827 3.276857 CAGAGGAGCACACAATAGCAAT 58.723 45.455 0.00 0.00 0.00 3.56
2560 3828 4.445453 CAGAGGAGCACACAATAGCAATA 58.555 43.478 0.00 0.00 0.00 1.90
2561 3829 5.061853 CAGAGGAGCACACAATAGCAATAT 58.938 41.667 0.00 0.00 0.00 1.28
2562 3830 5.530171 CAGAGGAGCACACAATAGCAATATT 59.470 40.000 0.00 0.00 0.00 1.28
2563 3831 6.707608 CAGAGGAGCACACAATAGCAATATTA 59.292 38.462 0.00 0.00 0.00 0.98
2564 3832 6.708054 AGAGGAGCACACAATAGCAATATTAC 59.292 38.462 0.00 0.00 0.00 1.89
2565 3833 6.595682 AGGAGCACACAATAGCAATATTACT 58.404 36.000 0.00 0.00 0.00 2.24
2566 3834 7.056635 AGGAGCACACAATAGCAATATTACTT 58.943 34.615 0.00 0.00 0.00 2.24
2567 3835 8.210946 AGGAGCACACAATAGCAATATTACTTA 58.789 33.333 0.00 0.00 0.00 2.24
2568 3836 8.499162 GGAGCACACAATAGCAATATTACTTAG 58.501 37.037 0.00 0.00 0.00 2.18
2569 3837 8.964476 AGCACACAATAGCAATATTACTTAGT 57.036 30.769 0.00 0.00 0.00 2.24
2570 3838 8.830580 AGCACACAATAGCAATATTACTTAGTG 58.169 33.333 0.00 10.73 0.00 2.74
2579 3847 6.852664 GCAATATTACTTAGTGCCAAAGTGT 58.147 36.000 0.00 0.00 44.21 3.55
2580 3848 7.981142 GCAATATTACTTAGTGCCAAAGTGTA 58.019 34.615 0.00 1.19 44.21 2.90
2581 3849 8.455682 GCAATATTACTTAGTGCCAAAGTGTAA 58.544 33.333 0.00 0.00 44.21 2.41
2582 3850 9.769093 CAATATTACTTAGTGCCAAAGTGTAAC 57.231 33.333 0.00 0.00 37.71 2.50
2598 3866 4.385825 GTGTAACTTCTTCCATGGACACA 58.614 43.478 15.91 7.20 36.73 3.72
2599 3867 5.003804 GTGTAACTTCTTCCATGGACACAT 58.996 41.667 15.91 1.48 36.73 3.21
2611 3879 3.998913 TGGACACATGAGGCTTATCAA 57.001 42.857 0.00 0.00 31.76 2.57
2612 3880 3.609853 TGGACACATGAGGCTTATCAAC 58.390 45.455 0.00 0.00 31.76 3.18
2613 3881 2.609459 GGACACATGAGGCTTATCAACG 59.391 50.000 0.00 0.00 31.76 4.10
2614 3882 2.609459 GACACATGAGGCTTATCAACGG 59.391 50.000 0.00 0.00 31.76 4.44
2615 3883 2.027192 ACACATGAGGCTTATCAACGGT 60.027 45.455 0.00 0.00 31.76 4.83
2616 3884 3.196901 ACACATGAGGCTTATCAACGGTA 59.803 43.478 0.00 0.00 31.76 4.02
2617 3885 3.555956 CACATGAGGCTTATCAACGGTAC 59.444 47.826 0.00 0.00 31.76 3.34
2618 3886 3.451178 ACATGAGGCTTATCAACGGTACT 59.549 43.478 0.00 0.00 31.76 2.73
2619 3887 4.647853 ACATGAGGCTTATCAACGGTACTA 59.352 41.667 0.00 0.00 31.76 1.82
2620 3888 5.304614 ACATGAGGCTTATCAACGGTACTAT 59.695 40.000 0.00 0.00 31.76 2.12
2621 3889 5.449107 TGAGGCTTATCAACGGTACTATC 57.551 43.478 0.00 0.00 0.00 2.08
2622 3890 4.280174 TGAGGCTTATCAACGGTACTATCC 59.720 45.833 0.00 0.00 0.00 2.59
2623 3891 3.577415 AGGCTTATCAACGGTACTATCCC 59.423 47.826 0.00 0.00 0.00 3.85
2624 3892 3.577415 GGCTTATCAACGGTACTATCCCT 59.423 47.826 0.00 0.00 0.00 4.20
2625 3893 4.768968 GGCTTATCAACGGTACTATCCCTA 59.231 45.833 0.00 0.00 0.00 3.53
2626 3894 5.421374 GGCTTATCAACGGTACTATCCCTAT 59.579 44.000 0.00 0.00 0.00 2.57
2627 3895 6.331061 GCTTATCAACGGTACTATCCCTATG 58.669 44.000 0.00 0.00 0.00 2.23
2628 3896 6.627508 GCTTATCAACGGTACTATCCCTATGG 60.628 46.154 0.00 0.00 0.00 2.74
2630 3898 4.147321 TCAACGGTACTATCCCTATGGAC 58.853 47.826 0.00 0.00 45.58 4.02
2631 3899 4.141088 TCAACGGTACTATCCCTATGGACT 60.141 45.833 0.00 0.00 45.58 3.85
2632 3900 3.764218 ACGGTACTATCCCTATGGACTG 58.236 50.000 0.00 0.00 45.58 3.51
2633 3901 3.090037 CGGTACTATCCCTATGGACTGG 58.910 54.545 0.00 0.00 45.58 4.00
2634 3902 3.499926 CGGTACTATCCCTATGGACTGGT 60.500 52.174 0.00 0.00 45.58 4.00
2635 3903 4.087907 GGTACTATCCCTATGGACTGGTC 58.912 52.174 0.00 0.00 45.58 4.02
2636 3904 4.202695 GGTACTATCCCTATGGACTGGTCT 60.203 50.000 0.67 0.00 45.58 3.85
2637 3905 5.014966 GGTACTATCCCTATGGACTGGTCTA 59.985 48.000 0.67 0.00 45.58 2.59
2638 3906 5.263872 ACTATCCCTATGGACTGGTCTAG 57.736 47.826 0.67 0.00 45.58 2.43
2639 3907 4.920749 ACTATCCCTATGGACTGGTCTAGA 59.079 45.833 0.00 0.00 45.58 2.43
2640 3908 3.885976 TCCCTATGGACTGGTCTAGAG 57.114 52.381 0.00 2.48 35.03 2.43
2641 3909 2.158445 TCCCTATGGACTGGTCTAGAGC 60.158 54.545 15.12 15.12 35.03 4.09
2642 3910 2.424957 CCCTATGGACTGGTCTAGAGCA 60.425 54.545 22.58 22.58 37.27 4.26
2648 3916 3.713650 TGGTCTAGAGCAGCCCAC 58.286 61.111 20.43 0.00 34.41 4.61
2649 3917 1.229177 TGGTCTAGAGCAGCCCACA 60.229 57.895 20.43 0.00 34.41 4.17
2650 3918 0.618680 TGGTCTAGAGCAGCCCACAT 60.619 55.000 20.43 0.00 34.41 3.21
2651 3919 0.543749 GGTCTAGAGCAGCCCACATT 59.456 55.000 16.98 0.00 0.00 2.71
2652 3920 1.474143 GGTCTAGAGCAGCCCACATTC 60.474 57.143 16.98 0.00 0.00 2.67
2653 3921 1.208052 GTCTAGAGCAGCCCACATTCA 59.792 52.381 0.00 0.00 0.00 2.57
2654 3922 2.121948 TCTAGAGCAGCCCACATTCAT 58.878 47.619 0.00 0.00 0.00 2.57
2655 3923 3.070159 GTCTAGAGCAGCCCACATTCATA 59.930 47.826 0.00 0.00 0.00 2.15
2656 3924 3.711190 TCTAGAGCAGCCCACATTCATAA 59.289 43.478 0.00 0.00 0.00 1.90
2657 3925 2.928334 AGAGCAGCCCACATTCATAAG 58.072 47.619 0.00 0.00 0.00 1.73
2658 3926 1.952296 GAGCAGCCCACATTCATAAGG 59.048 52.381 0.00 0.00 0.00 2.69
2659 3927 1.285962 AGCAGCCCACATTCATAAGGT 59.714 47.619 0.00 0.00 0.00 3.50
2660 3928 1.406539 GCAGCCCACATTCATAAGGTG 59.593 52.381 0.00 0.00 42.44 4.00
2666 3934 3.680642 CACATTCATAAGGTGGCGAAG 57.319 47.619 0.00 0.00 39.36 3.79
2667 3935 3.270027 CACATTCATAAGGTGGCGAAGA 58.730 45.455 0.00 0.00 39.36 2.87
2668 3936 3.310774 CACATTCATAAGGTGGCGAAGAG 59.689 47.826 0.00 0.00 39.36 2.85
2669 3937 2.691409 TTCATAAGGTGGCGAAGAGG 57.309 50.000 0.00 0.00 0.00 3.69
2670 3938 1.860641 TCATAAGGTGGCGAAGAGGA 58.139 50.000 0.00 0.00 0.00 3.71
2671 3939 1.480954 TCATAAGGTGGCGAAGAGGAC 59.519 52.381 0.00 0.00 0.00 3.85
2672 3940 0.460311 ATAAGGTGGCGAAGAGGACG 59.540 55.000 0.00 0.00 0.00 4.79
2673 3941 1.601419 TAAGGTGGCGAAGAGGACGG 61.601 60.000 0.00 0.00 0.00 4.79
2674 3942 3.692406 GGTGGCGAAGAGGACGGT 61.692 66.667 0.00 0.00 0.00 4.83
2675 3943 2.342648 GTGGCGAAGAGGACGGTT 59.657 61.111 0.00 0.00 0.00 4.44
2676 3944 2.027625 GTGGCGAAGAGGACGGTTG 61.028 63.158 0.00 0.00 0.00 3.77
2677 3945 2.434359 GGCGAAGAGGACGGTTGG 60.434 66.667 0.00 0.00 0.00 3.77
2678 3946 2.434359 GCGAAGAGGACGGTTGGG 60.434 66.667 0.00 0.00 0.00 4.12
2679 3947 2.264794 CGAAGAGGACGGTTGGGG 59.735 66.667 0.00 0.00 0.00 4.96
2680 3948 2.580601 CGAAGAGGACGGTTGGGGT 61.581 63.158 0.00 0.00 0.00 4.95
2681 3949 1.759236 GAAGAGGACGGTTGGGGTT 59.241 57.895 0.00 0.00 0.00 4.11
2682 3950 0.321387 GAAGAGGACGGTTGGGGTTC 60.321 60.000 0.00 0.00 0.00 3.62
2683 3951 0.767060 AAGAGGACGGTTGGGGTTCT 60.767 55.000 0.00 0.00 0.00 3.01
2684 3952 0.767060 AGAGGACGGTTGGGGTTCTT 60.767 55.000 0.00 0.00 0.00 2.52
2685 3953 0.321387 GAGGACGGTTGGGGTTCTTC 60.321 60.000 0.00 0.00 0.00 2.87
2686 3954 1.303074 GGACGGTTGGGGTTCTTCC 60.303 63.158 0.00 0.00 0.00 3.46
2687 3955 1.759236 GACGGTTGGGGTTCTTCCT 59.241 57.895 0.00 0.00 36.25 3.36
2688 3956 0.605589 GACGGTTGGGGTTCTTCCTG 60.606 60.000 0.00 0.00 36.25 3.86
2689 3957 1.057851 ACGGTTGGGGTTCTTCCTGA 61.058 55.000 0.00 0.00 36.25 3.86
2690 3958 0.605589 CGGTTGGGGTTCTTCCTGAC 60.606 60.000 0.00 0.00 36.25 3.51
2691 3959 0.251209 GGTTGGGGTTCTTCCTGACC 60.251 60.000 0.00 0.00 36.25 4.02
2692 3960 0.476771 GTTGGGGTTCTTCCTGACCA 59.523 55.000 0.00 0.00 36.25 4.02
2693 3961 0.476771 TTGGGGTTCTTCCTGACCAC 59.523 55.000 0.00 0.00 36.25 4.16
2694 3962 0.401395 TGGGGTTCTTCCTGACCACT 60.401 55.000 0.00 0.00 36.25 4.00
2695 3963 0.036875 GGGGTTCTTCCTGACCACTG 59.963 60.000 0.00 0.00 36.25 3.66
2696 3964 0.765510 GGGTTCTTCCTGACCACTGT 59.234 55.000 0.00 0.00 36.25 3.55
2697 3965 1.543429 GGGTTCTTCCTGACCACTGTG 60.543 57.143 0.00 0.00 36.25 3.66
2698 3966 1.230324 GTTCTTCCTGACCACTGTGC 58.770 55.000 1.29 0.00 0.00 4.57
2699 3967 0.108585 TTCTTCCTGACCACTGTGCC 59.891 55.000 1.29 0.00 0.00 5.01
2700 3968 1.669115 CTTCCTGACCACTGTGCCG 60.669 63.158 1.29 0.00 0.00 5.69
2701 3969 3.825160 TTCCTGACCACTGTGCCGC 62.825 63.158 1.29 0.00 0.00 6.53
2702 3970 4.624364 CCTGACCACTGTGCCGCA 62.624 66.667 1.29 0.00 0.00 5.69
2703 3971 2.359107 CTGACCACTGTGCCGCAT 60.359 61.111 1.29 0.00 0.00 4.73
2704 3972 1.079197 CTGACCACTGTGCCGCATA 60.079 57.895 1.29 0.00 0.00 3.14
2705 3973 0.673333 CTGACCACTGTGCCGCATAA 60.673 55.000 1.29 0.00 0.00 1.90
2706 3974 0.673333 TGACCACTGTGCCGCATAAG 60.673 55.000 1.29 0.03 0.00 1.73
2707 3975 1.369091 GACCACTGTGCCGCATAAGG 61.369 60.000 1.29 1.43 0.00 2.69
2715 3983 3.435590 CCGCATAAGGCCACATGG 58.564 61.111 5.01 2.14 40.31 3.66
2716 3984 1.453745 CCGCATAAGGCCACATGGT 60.454 57.895 5.01 0.00 40.31 3.55
2717 3985 1.447317 CCGCATAAGGCCACATGGTC 61.447 60.000 5.01 0.00 40.99 4.02
2718 3986 1.447317 CGCATAAGGCCACATGGTCC 61.447 60.000 5.01 1.13 41.83 4.46
2719 3987 0.395586 GCATAAGGCCACATGGTCCA 60.396 55.000 5.01 0.00 41.83 4.02
2720 3988 1.959508 GCATAAGGCCACATGGTCCAA 60.960 52.381 5.01 0.00 41.83 3.53
2721 3989 2.026641 CATAAGGCCACATGGTCCAAG 58.973 52.381 5.01 0.00 41.83 3.61
2722 3990 0.323360 TAAGGCCACATGGTCCAAGC 60.323 55.000 5.01 0.00 41.83 4.01
2723 3991 2.283101 GGCCACATGGTCCAAGCA 60.283 61.111 0.00 0.00 37.57 3.91
2724 3992 2.639327 GGCCACATGGTCCAAGCAC 61.639 63.158 0.00 0.00 37.57 4.40
2725 3993 2.639327 GCCACATGGTCCAAGCACC 61.639 63.158 0.00 0.00 37.57 5.01
2726 3994 1.075482 CCACATGGTCCAAGCACCT 59.925 57.895 0.00 0.00 37.34 4.00
2727 3995 0.540365 CCACATGGTCCAAGCACCTT 60.540 55.000 0.00 0.00 37.34 3.50
2728 3996 0.599558 CACATGGTCCAAGCACCTTG 59.400 55.000 0.00 5.56 43.94 3.61
2729 3997 0.185901 ACATGGTCCAAGCACCTTGT 59.814 50.000 0.00 6.64 45.52 3.16
2730 3998 1.331214 CATGGTCCAAGCACCTTGTT 58.669 50.000 0.00 0.00 39.58 2.83
2731 3999 1.000060 CATGGTCCAAGCACCTTGTTG 60.000 52.381 0.00 0.00 39.58 3.33
2732 4000 1.363807 GGTCCAAGCACCTTGTTGC 59.636 57.895 4.48 0.00 39.58 4.17
2733 4001 1.363807 GTCCAAGCACCTTGTTGCC 59.636 57.895 4.48 0.00 44.14 4.52
2734 4002 1.832167 TCCAAGCACCTTGTTGCCC 60.832 57.895 4.48 0.00 44.14 5.36
2735 4003 2.736531 CAAGCACCTTGTTGCCCC 59.263 61.111 0.00 0.00 44.14 5.80
2736 4004 1.833934 CAAGCACCTTGTTGCCCCT 60.834 57.895 0.00 0.00 44.14 4.79
2737 4005 0.539438 CAAGCACCTTGTTGCCCCTA 60.539 55.000 0.00 0.00 44.14 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.094785 GTGCGCCACTTATCATTGGT 58.905 50.000 4.18 0.00 35.09 3.67
93 98 3.958860 GGGCCGGGAGATGGATGG 61.959 72.222 2.18 0.00 0.00 3.51
94 99 3.958860 GGGGCCGGGAGATGGATG 61.959 72.222 2.18 0.00 0.00 3.51
128 133 0.596600 GCAATCATGATGCCGCCTTG 60.597 55.000 9.46 3.76 37.85 3.61
169 174 6.291955 CGTAATACGTTCGCAAGTGGAAATAT 60.292 38.462 4.41 0.00 36.74 1.28
170 175 5.004630 CGTAATACGTTCGCAAGTGGAAATA 59.995 40.000 4.41 0.00 36.74 1.40
187 192 9.037737 TGGAGATGCAAATTAAGTACGTAATAC 57.962 33.333 13.42 7.91 0.00 1.89
188 193 9.256477 CTGGAGATGCAAATTAAGTACGTAATA 57.744 33.333 13.42 0.29 0.00 0.98
189 194 7.254795 GCTGGAGATGCAAATTAAGTACGTAAT 60.255 37.037 8.08 8.08 0.00 1.89
190 195 6.036735 GCTGGAGATGCAAATTAAGTACGTAA 59.963 38.462 3.68 3.68 0.00 3.18
191 196 5.522460 GCTGGAGATGCAAATTAAGTACGTA 59.478 40.000 0.00 0.00 0.00 3.57
192 197 4.332819 GCTGGAGATGCAAATTAAGTACGT 59.667 41.667 0.00 0.00 0.00 3.57
193 198 4.572389 AGCTGGAGATGCAAATTAAGTACG 59.428 41.667 0.00 0.00 0.00 3.67
194 199 7.579726 CATAGCTGGAGATGCAAATTAAGTAC 58.420 38.462 0.00 0.00 0.00 2.73
195 200 6.205464 GCATAGCTGGAGATGCAAATTAAGTA 59.795 38.462 13.18 0.00 46.29 2.24
196 201 5.009410 GCATAGCTGGAGATGCAAATTAAGT 59.991 40.000 13.18 0.00 46.29 2.24
197 202 5.458891 GCATAGCTGGAGATGCAAATTAAG 58.541 41.667 13.18 0.00 46.29 1.85
221 226 0.666274 CGTCAACTACTTGCTGCCGA 60.666 55.000 0.00 0.00 0.00 5.54
225 230 1.531149 CCAACCGTCAACTACTTGCTG 59.469 52.381 0.00 0.00 0.00 4.41
303 1024 9.483916 TGAAACAGTTCGAGTTAATTATCTTGA 57.516 29.630 8.78 8.78 36.46 3.02
306 1027 9.436957 ACATGAAACAGTTCGAGTTAATTATCT 57.563 29.630 0.00 0.00 36.46 1.98
450 1302 3.121030 CCTCTTGTTGAGCGGCCG 61.121 66.667 24.05 24.05 41.35 6.13
745 1602 3.838120 CTTTTTCCAGCGGATTCTTTCC 58.162 45.455 0.00 0.00 41.59 3.13
749 1606 1.177401 GGCTTTTTCCAGCGGATTCT 58.823 50.000 0.00 0.00 41.12 2.40
750 1607 0.179163 CGGCTTTTTCCAGCGGATTC 60.179 55.000 0.00 0.00 41.48 2.52
751 1608 1.883021 CGGCTTTTTCCAGCGGATT 59.117 52.632 0.00 0.00 41.48 3.01
752 1609 2.700773 GCGGCTTTTTCCAGCGGAT 61.701 57.895 4.58 0.00 41.48 4.18
753 1610 3.361977 GCGGCTTTTTCCAGCGGA 61.362 61.111 4.58 0.00 41.48 5.54
754 1611 4.759096 CGCGGCTTTTTCCAGCGG 62.759 66.667 0.00 0.00 41.65 5.52
755 1612 3.536498 AACGCGGCTTTTTCCAGCG 62.536 57.895 12.47 6.59 46.44 5.18
756 1613 1.729484 GAACGCGGCTTTTTCCAGC 60.729 57.895 12.47 0.00 39.28 4.85
757 1614 1.081442 GGAACGCGGCTTTTTCCAG 60.081 57.895 17.70 0.00 38.98 3.86
758 1615 2.557372 GGGAACGCGGCTTTTTCCA 61.557 57.895 22.27 0.00 40.65 3.53
759 1616 2.257371 GGGAACGCGGCTTTTTCC 59.743 61.111 12.47 14.09 38.50 3.13
874 1742 3.238497 TGGACACTGACGTGGGGG 61.238 66.667 0.00 0.00 45.50 5.40
902 1770 3.869473 AAAAGCCGCAGCCGACGTA 62.869 57.895 0.00 0.00 41.25 3.57
975 1843 4.126908 CCAGCTGGTCTGAGAGGT 57.873 61.111 25.53 0.00 45.72 3.85
1053 1921 2.964389 GCTAGCTACTGCCGCTGC 60.964 66.667 7.70 0.00 40.80 5.25
1054 1922 2.656651 CGCTAGCTACTGCCGCTG 60.657 66.667 13.93 0.00 40.80 5.18
1055 1923 2.829003 TCGCTAGCTACTGCCGCT 60.829 61.111 13.93 0.00 40.80 5.52
1056 1924 2.655685 GTCGCTAGCTACTGCCGC 60.656 66.667 13.93 0.00 40.80 6.53
1057 1925 1.586564 GTGTCGCTAGCTACTGCCG 60.587 63.158 18.99 0.00 40.80 5.69
1058 1926 0.802607 GTGTGTCGCTAGCTACTGCC 60.803 60.000 18.99 8.62 40.80 4.85
1063 1931 2.035449 AGTTGTTGTGTGTCGCTAGCTA 59.965 45.455 13.93 0.00 0.00 3.32
1098 1966 0.544223 GCCTTCTTCTTCCTCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
1143 2015 4.120331 GCAGTTCCCCATGCGTGC 62.120 66.667 0.00 0.00 31.87 5.34
1224 2096 3.358076 CTTGCCCCTCGTCCTCGTC 62.358 68.421 0.00 0.00 38.33 4.20
1241 2113 2.038007 TCCTTCCTCTGCTCCGCT 59.962 61.111 0.00 0.00 0.00 5.52
1281 2153 2.124819 CTGCCGCTTGCTGATCCT 60.125 61.111 0.00 0.00 41.11 3.24
1371 2255 1.809619 CGGCGTTCATGATGTCCGT 60.810 57.895 16.96 0.00 32.70 4.69
1442 2326 2.364186 TCCGGGATGCTCTGCAGA 60.364 61.111 17.19 17.19 43.65 4.26
1528 2412 3.321497 CAACCAAGAAGGAGACGAGAAG 58.679 50.000 0.00 0.00 41.22 2.85
1539 2423 1.068954 GGCGAAGAAGCAACCAAGAAG 60.069 52.381 0.00 0.00 39.27 2.85
1565 2449 2.548480 GCTGTGTGTTCTACCAAAGGTC 59.452 50.000 0.00 0.00 37.09 3.85
1566 2450 2.172717 AGCTGTGTGTTCTACCAAAGGT 59.827 45.455 0.00 0.00 40.16 3.50
1567 2451 2.851195 AGCTGTGTGTTCTACCAAAGG 58.149 47.619 0.00 0.00 0.00 3.11
1568 2452 4.900635 AAAGCTGTGTGTTCTACCAAAG 57.099 40.909 0.00 0.00 0.00 2.77
1569 2453 6.734137 CATAAAAGCTGTGTGTTCTACCAAA 58.266 36.000 0.00 0.00 0.00 3.28
1572 2456 4.669197 CGCATAAAAGCTGTGTGTTCTACC 60.669 45.833 0.00 0.00 0.00 3.18
1574 2458 3.435327 CCGCATAAAAGCTGTGTGTTCTA 59.565 43.478 0.00 0.00 0.00 2.10
1575 2459 2.226437 CCGCATAAAAGCTGTGTGTTCT 59.774 45.455 0.00 0.00 0.00 3.01
1576 2460 2.584791 CCGCATAAAAGCTGTGTGTTC 58.415 47.619 0.00 0.00 0.00 3.18
1577 2461 1.335872 GCCGCATAAAAGCTGTGTGTT 60.336 47.619 0.00 0.00 0.00 3.32
1578 2462 0.240945 GCCGCATAAAAGCTGTGTGT 59.759 50.000 0.00 0.00 0.00 3.72
1579 2463 0.456653 GGCCGCATAAAAGCTGTGTG 60.457 55.000 0.00 0.00 0.00 3.82
1592 2476 4.792521 ATAATAACACAAAAAGGCCGCA 57.207 36.364 0.00 0.00 0.00 5.69
1608 2492 7.612244 TCGTTGGATCCAAACCAAAGAATAATA 59.388 33.333 28.64 0.00 46.54 0.98
1609 2493 6.435904 TCGTTGGATCCAAACCAAAGAATAAT 59.564 34.615 28.64 0.00 46.54 1.28
1610 2494 5.770663 TCGTTGGATCCAAACCAAAGAATAA 59.229 36.000 28.64 0.00 46.54 1.40
1683 2664 3.055094 AGCCGTATGGACAGAAGAACATT 60.055 43.478 4.73 0.00 37.49 2.71
1739 2726 1.225936 CGCACAAAGCAGCAGATCG 60.226 57.895 0.00 0.00 46.13 3.69
1756 2743 0.318614 AATGCTTGGTTTGTTCCGCG 60.319 50.000 0.00 0.00 0.00 6.46
1758 2745 3.868077 TGAAAAATGCTTGGTTTGTTCCG 59.132 39.130 0.00 0.00 0.00 4.30
1774 2767 4.206375 TGGACAGCAGATCAAGTGAAAAA 58.794 39.130 0.00 0.00 0.00 1.94
1788 2781 0.753867 TACCGTGTTTCTGGACAGCA 59.246 50.000 0.00 0.00 0.00 4.41
1797 2790 1.058404 GCTCGTCTGTACCGTGTTTC 58.942 55.000 0.00 0.00 0.00 2.78
1892 2943 0.952010 CCAACATTGCTTTGCAGCCC 60.952 55.000 0.00 0.00 46.74 5.19
1895 2946 1.868498 CCAACCAACATTGCTTTGCAG 59.132 47.619 0.00 0.00 40.61 4.41
1920 2971 1.372501 ACATAACCTGGCTTCTGGGT 58.627 50.000 0.00 0.00 34.25 4.51
1961 3012 7.008021 ACATTGCATAACCTGGATTCTTTTT 57.992 32.000 0.00 0.00 0.00 1.94
1962 3013 6.610075 ACATTGCATAACCTGGATTCTTTT 57.390 33.333 0.00 0.00 0.00 2.27
1963 3014 7.716799 TTACATTGCATAACCTGGATTCTTT 57.283 32.000 0.00 0.00 0.00 2.52
1964 3015 7.902920 ATTACATTGCATAACCTGGATTCTT 57.097 32.000 0.00 0.00 0.00 2.52
1965 3016 7.902920 AATTACATTGCATAACCTGGATTCT 57.097 32.000 0.00 0.00 0.00 2.40
1966 3017 9.630098 CATAATTACATTGCATAACCTGGATTC 57.370 33.333 0.00 0.00 0.00 2.52
1967 3018 9.365906 TCATAATTACATTGCATAACCTGGATT 57.634 29.630 0.00 0.00 0.00 3.01
1968 3019 8.938801 TCATAATTACATTGCATAACCTGGAT 57.061 30.769 0.00 0.00 0.00 3.41
1969 3020 8.759481 TTCATAATTACATTGCATAACCTGGA 57.241 30.769 0.00 0.00 0.00 3.86
1986 3043 7.470981 GCAGATCACACCCAATGATTCATAATT 60.471 37.037 0.00 0.00 36.92 1.40
2015 3072 4.081476 GGTAATGGTACCCACGACTTTACT 60.081 45.833 10.07 0.00 43.73 2.24
2034 3091 5.712004 CATGTGTGCAATCTTCATTGGTAA 58.288 37.500 0.00 0.00 40.03 2.85
2080 3345 3.118956 CCCATTTTTAATGCACGGGCTTA 60.119 43.478 12.74 4.18 41.91 3.09
2105 3370 1.860078 CAGGCGAACGAACCAAGAC 59.140 57.895 0.00 0.00 0.00 3.01
2132 3398 1.739466 GCGAATCAGGTCTTTCATGCA 59.261 47.619 0.00 0.00 0.00 3.96
2324 3590 8.806429 TCCAAATCTGCTCTATCATTTTTGTA 57.194 30.769 0.00 0.00 0.00 2.41
2379 3647 3.816480 GCTTAAGGTTTGGCCCTCCTAAA 60.816 47.826 0.00 0.00 38.26 1.85
2381 3649 1.283905 GCTTAAGGTTTGGCCCTCCTA 59.716 52.381 0.00 0.00 38.26 2.94
2382 3650 0.039764 GCTTAAGGTTTGGCCCTCCT 59.960 55.000 0.00 1.92 38.26 3.69
2426 3694 4.406649 GTGCTGGTAAACCTATACACCCTA 59.593 45.833 0.02 0.00 36.82 3.53
2427 3695 3.199289 GTGCTGGTAAACCTATACACCCT 59.801 47.826 0.02 0.00 36.82 4.34
2428 3696 3.538591 GTGCTGGTAAACCTATACACCC 58.461 50.000 0.02 0.00 36.82 4.61
2429 3697 3.054948 TGGTGCTGGTAAACCTATACACC 60.055 47.826 18.43 18.43 41.32 4.16
2430 3698 3.937079 GTGGTGCTGGTAAACCTATACAC 59.063 47.826 0.02 3.81 37.36 2.90
2431 3699 3.841845 AGTGGTGCTGGTAAACCTATACA 59.158 43.478 0.02 0.00 37.36 2.29
2432 3700 4.081309 TGAGTGGTGCTGGTAAACCTATAC 60.081 45.833 0.02 0.00 37.36 1.47
2433 3701 4.081309 GTGAGTGGTGCTGGTAAACCTATA 60.081 45.833 0.02 0.00 37.36 1.31
2434 3702 2.910319 TGAGTGGTGCTGGTAAACCTAT 59.090 45.455 0.02 0.00 37.36 2.57
2435 3703 2.038033 GTGAGTGGTGCTGGTAAACCTA 59.962 50.000 0.02 0.00 37.36 3.08
2436 3704 1.136828 TGAGTGGTGCTGGTAAACCT 58.863 50.000 0.02 0.00 37.36 3.50
2437 3705 1.235724 GTGAGTGGTGCTGGTAAACC 58.764 55.000 0.00 0.00 36.96 3.27
2438 3706 1.961793 TGTGAGTGGTGCTGGTAAAC 58.038 50.000 0.00 0.00 0.00 2.01
2439 3707 2.503331 CATGTGAGTGGTGCTGGTAAA 58.497 47.619 0.00 0.00 0.00 2.01
2440 3708 1.271325 CCATGTGAGTGGTGCTGGTAA 60.271 52.381 0.00 0.00 34.46 2.85
2441 3709 0.324614 CCATGTGAGTGGTGCTGGTA 59.675 55.000 0.00 0.00 34.46 3.25
2442 3710 1.073722 CCATGTGAGTGGTGCTGGT 59.926 57.895 0.00 0.00 34.46 4.00
2443 3711 1.676635 CCCATGTGAGTGGTGCTGG 60.677 63.158 0.00 0.00 37.57 4.85
2444 3712 1.676635 CCCCATGTGAGTGGTGCTG 60.677 63.158 0.00 0.00 37.57 4.41
2445 3713 2.759114 CCCCATGTGAGTGGTGCT 59.241 61.111 0.00 0.00 37.57 4.40
2446 3714 3.064324 GCCCCATGTGAGTGGTGC 61.064 66.667 0.00 0.00 37.57 5.01
2447 3715 2.361610 GGCCCCATGTGAGTGGTG 60.362 66.667 0.00 0.00 37.57 4.17
2448 3716 4.033776 CGGCCCCATGTGAGTGGT 62.034 66.667 0.00 0.00 37.57 4.16
2449 3717 3.687321 CTCGGCCCCATGTGAGTGG 62.687 68.421 0.00 0.00 39.05 4.00
2450 3718 2.124983 CTCGGCCCCATGTGAGTG 60.125 66.667 0.00 0.00 0.00 3.51
2451 3719 2.284625 TCTCGGCCCCATGTGAGT 60.285 61.111 0.00 0.00 0.00 3.41
2452 3720 2.187946 GTCTCGGCCCCATGTGAG 59.812 66.667 0.00 0.00 0.00 3.51
2453 3721 3.399181 GGTCTCGGCCCCATGTGA 61.399 66.667 0.00 0.00 0.00 3.58
2454 3722 3.047807 ATGGTCTCGGCCCCATGTG 62.048 63.158 10.19 0.00 39.96 3.21
2455 3723 2.692368 ATGGTCTCGGCCCCATGT 60.692 61.111 10.19 0.00 39.96 3.21
2457 3725 1.383943 TACATGGTCTCGGCCCCAT 60.384 57.895 5.48 5.48 42.19 4.00
2458 3726 2.039787 TACATGGTCTCGGCCCCA 59.960 61.111 0.00 0.00 34.66 4.96
2459 3727 2.363975 TGTACATGGTCTCGGCCCC 61.364 63.158 0.00 0.00 0.00 5.80
2460 3728 1.153429 GTGTACATGGTCTCGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
2461 3729 0.178068 ATGTGTACATGGTCTCGGCC 59.822 55.000 0.00 0.00 34.83 6.13
2462 3730 3.760693 ATGTGTACATGGTCTCGGC 57.239 52.632 0.00 0.00 34.83 5.54
2471 3739 1.202463 GGAGCTCGAGCATGTGTACAT 60.202 52.381 36.87 14.92 45.16 2.29
2472 3740 0.173481 GGAGCTCGAGCATGTGTACA 59.827 55.000 36.87 0.00 45.16 2.90
2473 3741 0.528684 GGGAGCTCGAGCATGTGTAC 60.529 60.000 36.87 18.17 45.16 2.90
2474 3742 0.970427 TGGGAGCTCGAGCATGTGTA 60.970 55.000 36.87 16.28 45.16 2.90
2475 3743 1.620739 ATGGGAGCTCGAGCATGTGT 61.621 55.000 36.87 18.07 45.16 3.72
2476 3744 1.145598 ATGGGAGCTCGAGCATGTG 59.854 57.895 36.87 0.76 45.16 3.21
2477 3745 1.145598 CATGGGAGCTCGAGCATGT 59.854 57.895 36.87 18.88 45.16 3.21
2478 3746 0.879400 GTCATGGGAGCTCGAGCATG 60.879 60.000 36.87 29.06 45.16 4.06
2479 3747 1.332889 TGTCATGGGAGCTCGAGCAT 61.333 55.000 36.87 22.68 45.16 3.79
2480 3748 1.984026 TGTCATGGGAGCTCGAGCA 60.984 57.895 36.87 18.69 45.16 4.26
2481 3749 1.520342 GTGTCATGGGAGCTCGAGC 60.520 63.158 30.01 30.01 42.49 5.03
2482 3750 0.463204 ATGTGTCATGGGAGCTCGAG 59.537 55.000 8.45 8.45 0.00 4.04
2483 3751 1.683385 CTATGTGTCATGGGAGCTCGA 59.317 52.381 7.83 0.00 0.00 4.04
2484 3752 1.683385 TCTATGTGTCATGGGAGCTCG 59.317 52.381 7.83 0.00 0.00 5.03
2485 3753 3.462021 GTTCTATGTGTCATGGGAGCTC 58.538 50.000 4.71 4.71 0.00 4.09
2486 3754 2.171448 GGTTCTATGTGTCATGGGAGCT 59.829 50.000 0.00 0.00 0.00 4.09
2487 3755 2.092968 TGGTTCTATGTGTCATGGGAGC 60.093 50.000 0.00 0.00 0.00 4.70
2488 3756 3.912496 TGGTTCTATGTGTCATGGGAG 57.088 47.619 0.00 0.00 0.00 4.30
2489 3757 4.649267 TTTGGTTCTATGTGTCATGGGA 57.351 40.909 0.00 0.00 0.00 4.37
2490 3758 4.766891 AGTTTTGGTTCTATGTGTCATGGG 59.233 41.667 0.00 0.00 0.00 4.00
2491 3759 5.473162 TCAGTTTTGGTTCTATGTGTCATGG 59.527 40.000 0.00 0.00 0.00 3.66
2492 3760 6.558771 TCAGTTTTGGTTCTATGTGTCATG 57.441 37.500 0.00 0.00 0.00 3.07
2493 3761 7.285401 ACTTTCAGTTTTGGTTCTATGTGTCAT 59.715 33.333 0.00 0.00 0.00 3.06
2494 3762 6.601613 ACTTTCAGTTTTGGTTCTATGTGTCA 59.398 34.615 0.00 0.00 0.00 3.58
2495 3763 6.912591 CACTTTCAGTTTTGGTTCTATGTGTC 59.087 38.462 0.00 0.00 0.00 3.67
2496 3764 6.601613 TCACTTTCAGTTTTGGTTCTATGTGT 59.398 34.615 0.00 0.00 0.00 3.72
2497 3765 7.026631 TCACTTTCAGTTTTGGTTCTATGTG 57.973 36.000 0.00 0.00 0.00 3.21
2498 3766 7.823745 ATCACTTTCAGTTTTGGTTCTATGT 57.176 32.000 0.00 0.00 0.00 2.29
2502 3770 9.574516 ACTATAATCACTTTCAGTTTTGGTTCT 57.425 29.630 0.00 0.00 0.00 3.01
2505 3773 8.793592 GGAACTATAATCACTTTCAGTTTTGGT 58.206 33.333 0.00 0.00 0.00 3.67
2506 3774 8.792633 TGGAACTATAATCACTTTCAGTTTTGG 58.207 33.333 0.00 0.00 0.00 3.28
2509 3777 9.739276 TGATGGAACTATAATCACTTTCAGTTT 57.261 29.630 0.00 0.00 0.00 2.66
2510 3778 9.911788 ATGATGGAACTATAATCACTTTCAGTT 57.088 29.630 0.00 0.00 33.37 3.16
2511 3779 9.553064 GATGATGGAACTATAATCACTTTCAGT 57.447 33.333 0.00 0.00 33.37 3.41
2512 3780 8.997323 GGATGATGGAACTATAATCACTTTCAG 58.003 37.037 0.00 0.00 33.37 3.02
2513 3781 8.493607 TGGATGATGGAACTATAATCACTTTCA 58.506 33.333 0.00 0.00 33.37 2.69
2514 3782 8.908786 TGGATGATGGAACTATAATCACTTTC 57.091 34.615 0.00 0.00 33.37 2.62
2515 3783 8.717717 TCTGGATGATGGAACTATAATCACTTT 58.282 33.333 0.00 0.00 33.37 2.66
2516 3784 8.267620 TCTGGATGATGGAACTATAATCACTT 57.732 34.615 0.00 0.00 33.37 3.16
2517 3785 7.038445 CCTCTGGATGATGGAACTATAATCACT 60.038 40.741 0.00 0.00 33.37 3.41
2518 3786 7.038729 TCCTCTGGATGATGGAACTATAATCAC 60.039 40.741 0.00 0.00 33.37 3.06
2519 3787 7.018769 TCCTCTGGATGATGGAACTATAATCA 58.981 38.462 0.00 0.00 34.96 2.57
2520 3788 7.487822 TCCTCTGGATGATGGAACTATAATC 57.512 40.000 0.00 0.00 0.00 1.75
2521 3789 6.070309 GCTCCTCTGGATGATGGAACTATAAT 60.070 42.308 0.00 0.00 0.00 1.28
2522 3790 5.247110 GCTCCTCTGGATGATGGAACTATAA 59.753 44.000 0.00 0.00 0.00 0.98
2523 3791 4.774726 GCTCCTCTGGATGATGGAACTATA 59.225 45.833 0.00 0.00 0.00 1.31
2524 3792 3.582208 GCTCCTCTGGATGATGGAACTAT 59.418 47.826 0.00 0.00 0.00 2.12
2525 3793 2.968574 GCTCCTCTGGATGATGGAACTA 59.031 50.000 0.00 0.00 0.00 2.24
2526 3794 1.767681 GCTCCTCTGGATGATGGAACT 59.232 52.381 0.00 0.00 0.00 3.01
2527 3795 1.487976 TGCTCCTCTGGATGATGGAAC 59.512 52.381 0.00 0.00 0.00 3.62
2528 3796 1.487976 GTGCTCCTCTGGATGATGGAA 59.512 52.381 0.00 0.00 0.00 3.53
2529 3797 1.126488 GTGCTCCTCTGGATGATGGA 58.874 55.000 0.00 0.00 0.00 3.41
2530 3798 0.835276 TGTGCTCCTCTGGATGATGG 59.165 55.000 0.00 0.00 0.00 3.51
2531 3799 1.208776 TGTGTGCTCCTCTGGATGATG 59.791 52.381 0.00 0.00 0.00 3.07
2532 3800 1.576577 TGTGTGCTCCTCTGGATGAT 58.423 50.000 0.00 0.00 0.00 2.45
2533 3801 1.351076 TTGTGTGCTCCTCTGGATGA 58.649 50.000 0.00 0.00 0.00 2.92
2534 3802 2.414994 ATTGTGTGCTCCTCTGGATG 57.585 50.000 0.00 0.00 0.00 3.51
2535 3803 2.158842 GCTATTGTGTGCTCCTCTGGAT 60.159 50.000 0.00 0.00 0.00 3.41
2536 3804 1.208052 GCTATTGTGTGCTCCTCTGGA 59.792 52.381 0.00 0.00 0.00 3.86
2537 3805 1.065926 TGCTATTGTGTGCTCCTCTGG 60.066 52.381 0.00 0.00 0.00 3.86
2538 3806 2.391616 TGCTATTGTGTGCTCCTCTG 57.608 50.000 0.00 0.00 0.00 3.35
2539 3807 3.641434 ATTGCTATTGTGTGCTCCTCT 57.359 42.857 0.00 0.00 0.00 3.69
2540 3808 6.708054 AGTAATATTGCTATTGTGTGCTCCTC 59.292 38.462 4.01 0.00 0.00 3.71
2541 3809 6.595682 AGTAATATTGCTATTGTGTGCTCCT 58.404 36.000 4.01 0.00 0.00 3.69
2542 3810 6.867662 AGTAATATTGCTATTGTGTGCTCC 57.132 37.500 4.01 0.00 0.00 4.70
2543 3811 9.046296 ACTAAGTAATATTGCTATTGTGTGCTC 57.954 33.333 6.48 0.00 0.00 4.26
2544 3812 8.830580 CACTAAGTAATATTGCTATTGTGTGCT 58.169 33.333 6.48 0.00 0.00 4.40
2545 3813 7.587757 GCACTAAGTAATATTGCTATTGTGTGC 59.412 37.037 21.80 21.25 37.25 4.57
2546 3814 8.070171 GGCACTAAGTAATATTGCTATTGTGTG 58.930 37.037 21.80 17.96 39.45 3.82
2547 3815 7.773224 TGGCACTAAGTAATATTGCTATTGTGT 59.227 33.333 21.80 10.55 39.45 3.72
2548 3816 8.153479 TGGCACTAAGTAATATTGCTATTGTG 57.847 34.615 19.25 19.25 39.45 3.33
2549 3817 8.746052 TTGGCACTAAGTAATATTGCTATTGT 57.254 30.769 6.48 3.83 39.45 2.71
2550 3818 9.669353 CTTTGGCACTAAGTAATATTGCTATTG 57.331 33.333 6.48 5.72 39.45 1.90
2551 3819 9.408648 ACTTTGGCACTAAGTAATATTGCTATT 57.591 29.630 6.48 0.00 39.45 1.73
2552 3820 8.840321 CACTTTGGCACTAAGTAATATTGCTAT 58.160 33.333 6.48 0.87 39.45 2.97
2553 3821 7.827236 ACACTTTGGCACTAAGTAATATTGCTA 59.173 33.333 6.48 0.00 39.45 3.49
2554 3822 6.659242 ACACTTTGGCACTAAGTAATATTGCT 59.341 34.615 4.35 0.00 39.45 3.91
2555 3823 6.852664 ACACTTTGGCACTAAGTAATATTGC 58.147 36.000 4.35 0.00 38.95 3.56
2556 3824 9.769093 GTTACACTTTGGCACTAAGTAATATTG 57.231 33.333 4.35 0.00 34.22 1.90
2557 3825 9.734984 AGTTACACTTTGGCACTAAGTAATATT 57.265 29.630 4.35 0.00 34.22 1.28
2558 3826 9.734984 AAGTTACACTTTGGCACTAAGTAATAT 57.265 29.630 4.35 0.00 34.11 1.28
2559 3827 9.211485 GAAGTTACACTTTGGCACTAAGTAATA 57.789 33.333 4.35 0.00 38.80 0.98
2560 3828 7.937394 AGAAGTTACACTTTGGCACTAAGTAAT 59.063 33.333 4.35 0.03 38.80 1.89
2561 3829 7.277396 AGAAGTTACACTTTGGCACTAAGTAA 58.723 34.615 4.35 1.74 38.80 2.24
2562 3830 6.823497 AGAAGTTACACTTTGGCACTAAGTA 58.177 36.000 4.35 0.00 38.80 2.24
2563 3831 5.681639 AGAAGTTACACTTTGGCACTAAGT 58.318 37.500 0.00 0.00 38.80 2.24
2564 3832 6.293462 GGAAGAAGTTACACTTTGGCACTAAG 60.293 42.308 0.00 0.00 38.80 2.18
2565 3833 5.529800 GGAAGAAGTTACACTTTGGCACTAA 59.470 40.000 0.00 0.00 38.80 2.24
2566 3834 5.061179 GGAAGAAGTTACACTTTGGCACTA 58.939 41.667 0.00 0.00 38.80 2.74
2567 3835 3.883489 GGAAGAAGTTACACTTTGGCACT 59.117 43.478 0.00 0.00 38.80 4.40
2568 3836 3.630312 TGGAAGAAGTTACACTTTGGCAC 59.370 43.478 0.00 0.00 38.80 5.01
2569 3837 3.892284 TGGAAGAAGTTACACTTTGGCA 58.108 40.909 0.00 0.00 38.80 4.92
2570 3838 4.321230 CCATGGAAGAAGTTACACTTTGGC 60.321 45.833 5.56 0.00 38.80 4.52
2571 3839 5.048713 GTCCATGGAAGAAGTTACACTTTGG 60.049 44.000 18.20 0.00 38.80 3.28
2572 3840 5.530915 TGTCCATGGAAGAAGTTACACTTTG 59.469 40.000 18.20 0.00 38.80 2.77
2573 3841 5.531287 GTGTCCATGGAAGAAGTTACACTTT 59.469 40.000 18.20 0.00 38.80 2.66
2574 3842 5.063880 GTGTCCATGGAAGAAGTTACACTT 58.936 41.667 18.20 0.00 41.95 3.16
2575 3843 4.102524 TGTGTCCATGGAAGAAGTTACACT 59.897 41.667 18.20 0.00 37.47 3.55
2576 3844 4.385825 TGTGTCCATGGAAGAAGTTACAC 58.614 43.478 18.20 17.89 37.18 2.90
2577 3845 4.698201 TGTGTCCATGGAAGAAGTTACA 57.302 40.909 18.20 5.16 0.00 2.41
2578 3846 5.245531 TCATGTGTCCATGGAAGAAGTTAC 58.754 41.667 18.20 2.09 46.96 2.50
2579 3847 5.491070 CTCATGTGTCCATGGAAGAAGTTA 58.509 41.667 18.20 0.00 46.96 2.24
2580 3848 4.330250 CTCATGTGTCCATGGAAGAAGTT 58.670 43.478 18.20 0.00 46.96 2.66
2581 3849 3.307975 CCTCATGTGTCCATGGAAGAAGT 60.308 47.826 18.20 0.00 46.96 3.01
2582 3850 3.276857 CCTCATGTGTCCATGGAAGAAG 58.723 50.000 18.20 8.27 46.96 2.85
2583 3851 2.618816 GCCTCATGTGTCCATGGAAGAA 60.619 50.000 18.20 4.87 46.96 2.52
2584 3852 1.065199 GCCTCATGTGTCCATGGAAGA 60.065 52.381 18.20 8.78 46.96 2.87
2585 3853 1.064906 AGCCTCATGTGTCCATGGAAG 60.065 52.381 18.20 9.05 46.96 3.46
2586 3854 0.994247 AGCCTCATGTGTCCATGGAA 59.006 50.000 18.20 0.37 46.96 3.53
2587 3855 0.994247 AAGCCTCATGTGTCCATGGA 59.006 50.000 11.44 11.44 46.96 3.41
2588 3856 2.715749 TAAGCCTCATGTGTCCATGG 57.284 50.000 4.97 4.97 46.96 3.66
2590 3858 4.202441 GTTGATAAGCCTCATGTGTCCAT 58.798 43.478 0.00 0.00 0.00 3.41
2591 3859 3.609853 GTTGATAAGCCTCATGTGTCCA 58.390 45.455 0.00 0.00 0.00 4.02
2592 3860 2.609459 CGTTGATAAGCCTCATGTGTCC 59.391 50.000 0.00 0.00 0.00 4.02
2593 3861 2.609459 CCGTTGATAAGCCTCATGTGTC 59.391 50.000 0.00 0.00 0.00 3.67
2594 3862 2.027192 ACCGTTGATAAGCCTCATGTGT 60.027 45.455 0.00 0.00 0.00 3.72
2595 3863 2.632377 ACCGTTGATAAGCCTCATGTG 58.368 47.619 0.00 0.00 0.00 3.21
2596 3864 3.451178 AGTACCGTTGATAAGCCTCATGT 59.549 43.478 0.00 0.00 0.00 3.21
2597 3865 4.060038 AGTACCGTTGATAAGCCTCATG 57.940 45.455 0.00 0.00 0.00 3.07
2598 3866 5.047235 GGATAGTACCGTTGATAAGCCTCAT 60.047 44.000 0.00 0.00 0.00 2.90
2599 3867 4.280174 GGATAGTACCGTTGATAAGCCTCA 59.720 45.833 0.00 0.00 0.00 3.86
2600 3868 4.321824 GGGATAGTACCGTTGATAAGCCTC 60.322 50.000 0.00 0.00 0.00 4.70
2601 3869 3.577415 GGGATAGTACCGTTGATAAGCCT 59.423 47.826 0.00 0.00 0.00 4.58
2602 3870 3.577415 AGGGATAGTACCGTTGATAAGCC 59.423 47.826 0.00 0.00 0.00 4.35
2603 3871 4.868314 AGGGATAGTACCGTTGATAAGC 57.132 45.455 0.00 0.00 0.00 3.09
2604 3872 6.662234 TCCATAGGGATAGTACCGTTGATAAG 59.338 42.308 0.00 0.00 38.64 1.73
2605 3873 6.554784 TCCATAGGGATAGTACCGTTGATAA 58.445 40.000 0.00 0.00 38.64 1.75
2606 3874 6.143551 TCCATAGGGATAGTACCGTTGATA 57.856 41.667 0.00 0.00 38.64 2.15
2607 3875 5.006896 TCCATAGGGATAGTACCGTTGAT 57.993 43.478 0.00 0.00 38.64 2.57
2608 3876 4.458256 TCCATAGGGATAGTACCGTTGA 57.542 45.455 0.00 0.00 38.64 3.18
2620 3888 2.158445 GCTCTAGACCAGTCCATAGGGA 60.158 54.545 0.00 0.00 42.29 4.20
2621 3889 2.243810 GCTCTAGACCAGTCCATAGGG 58.756 57.143 0.00 0.00 0.00 3.53
2622 3890 2.890311 CTGCTCTAGACCAGTCCATAGG 59.110 54.545 6.87 0.00 0.00 2.57
2623 3891 2.295909 GCTGCTCTAGACCAGTCCATAG 59.704 54.545 15.02 0.00 0.00 2.23
2624 3892 2.311463 GCTGCTCTAGACCAGTCCATA 58.689 52.381 15.02 0.00 0.00 2.74
2625 3893 1.118838 GCTGCTCTAGACCAGTCCAT 58.881 55.000 15.02 0.00 0.00 3.41
2626 3894 0.972983 GGCTGCTCTAGACCAGTCCA 60.973 60.000 15.02 0.00 0.00 4.02
2627 3895 1.819905 GGCTGCTCTAGACCAGTCC 59.180 63.158 15.02 12.67 0.00 3.85
2633 3901 1.208052 TGAATGTGGGCTGCTCTAGAC 59.792 52.381 0.00 0.00 0.00 2.59
2634 3902 1.571955 TGAATGTGGGCTGCTCTAGA 58.428 50.000 0.00 0.00 0.00 2.43
2635 3903 2.634815 ATGAATGTGGGCTGCTCTAG 57.365 50.000 0.00 0.00 0.00 2.43
2636 3904 3.181451 CCTTATGAATGTGGGCTGCTCTA 60.181 47.826 0.00 0.00 0.00 2.43
2637 3905 2.422519 CCTTATGAATGTGGGCTGCTCT 60.423 50.000 0.00 0.00 0.00 4.09
2638 3906 1.952296 CCTTATGAATGTGGGCTGCTC 59.048 52.381 0.00 0.00 0.00 4.26
2639 3907 1.285962 ACCTTATGAATGTGGGCTGCT 59.714 47.619 0.00 0.00 0.00 4.24
2640 3908 1.406539 CACCTTATGAATGTGGGCTGC 59.593 52.381 0.00 0.00 0.00 5.25
2641 3909 2.026641 CCACCTTATGAATGTGGGCTG 58.973 52.381 5.92 0.00 44.64 4.85
2642 3910 2.442236 CCACCTTATGAATGTGGGCT 57.558 50.000 5.92 0.00 44.64 5.19
2646 3914 3.270027 TCTTCGCCACCTTATGAATGTG 58.730 45.455 0.00 0.00 0.00 3.21
2647 3915 3.535561 CTCTTCGCCACCTTATGAATGT 58.464 45.455 0.00 0.00 0.00 2.71
2648 3916 2.874701 CCTCTTCGCCACCTTATGAATG 59.125 50.000 0.00 0.00 0.00 2.67
2649 3917 2.771943 TCCTCTTCGCCACCTTATGAAT 59.228 45.455 0.00 0.00 0.00 2.57
2650 3918 2.093658 GTCCTCTTCGCCACCTTATGAA 60.094 50.000 0.00 0.00 0.00 2.57
2651 3919 1.480954 GTCCTCTTCGCCACCTTATGA 59.519 52.381 0.00 0.00 0.00 2.15
2652 3920 1.802880 CGTCCTCTTCGCCACCTTATG 60.803 57.143 0.00 0.00 0.00 1.90
2653 3921 0.460311 CGTCCTCTTCGCCACCTTAT 59.540 55.000 0.00 0.00 0.00 1.73
2654 3922 1.601419 CCGTCCTCTTCGCCACCTTA 61.601 60.000 0.00 0.00 0.00 2.69
2655 3923 2.657237 CGTCCTCTTCGCCACCTT 59.343 61.111 0.00 0.00 0.00 3.50
2656 3924 3.382832 CCGTCCTCTTCGCCACCT 61.383 66.667 0.00 0.00 0.00 4.00
2657 3925 3.236003 AACCGTCCTCTTCGCCACC 62.236 63.158 0.00 0.00 0.00 4.61
2658 3926 2.027625 CAACCGTCCTCTTCGCCAC 61.028 63.158 0.00 0.00 0.00 5.01
2659 3927 2.342279 CAACCGTCCTCTTCGCCA 59.658 61.111 0.00 0.00 0.00 5.69
2660 3928 2.434359 CCAACCGTCCTCTTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
2661 3929 2.434359 CCCAACCGTCCTCTTCGC 60.434 66.667 0.00 0.00 0.00 4.70
2662 3930 2.108278 AACCCCAACCGTCCTCTTCG 62.108 60.000 0.00 0.00 0.00 3.79
2663 3931 0.321387 GAACCCCAACCGTCCTCTTC 60.321 60.000 0.00 0.00 0.00 2.87
2664 3932 0.767060 AGAACCCCAACCGTCCTCTT 60.767 55.000 0.00 0.00 0.00 2.85
2665 3933 0.767060 AAGAACCCCAACCGTCCTCT 60.767 55.000 0.00 0.00 0.00 3.69
2666 3934 0.321387 GAAGAACCCCAACCGTCCTC 60.321 60.000 0.00 0.00 0.00 3.71
2667 3935 1.759236 GAAGAACCCCAACCGTCCT 59.241 57.895 0.00 0.00 0.00 3.85
2668 3936 1.303074 GGAAGAACCCCAACCGTCC 60.303 63.158 0.00 0.00 0.00 4.79
2669 3937 0.605589 CAGGAAGAACCCCAACCGTC 60.606 60.000 0.00 0.00 40.05 4.79
2670 3938 1.057851 TCAGGAAGAACCCCAACCGT 61.058 55.000 0.00 0.00 40.05 4.83
2671 3939 0.605589 GTCAGGAAGAACCCCAACCG 60.606 60.000 0.00 0.00 40.05 4.44
2672 3940 0.251209 GGTCAGGAAGAACCCCAACC 60.251 60.000 0.00 0.00 40.05 3.77
2673 3941 0.476771 TGGTCAGGAAGAACCCCAAC 59.523 55.000 0.00 0.00 40.05 3.77
2674 3942 0.476771 GTGGTCAGGAAGAACCCCAA 59.523 55.000 0.00 0.00 40.05 4.12
2675 3943 0.401395 AGTGGTCAGGAAGAACCCCA 60.401 55.000 0.00 0.00 40.05 4.96
2676 3944 0.036875 CAGTGGTCAGGAAGAACCCC 59.963 60.000 0.00 0.00 40.05 4.95
2677 3945 0.765510 ACAGTGGTCAGGAAGAACCC 59.234 55.000 0.00 0.00 40.05 4.11
2678 3946 1.884235 CACAGTGGTCAGGAAGAACC 58.116 55.000 0.00 0.00 39.35 3.62
2679 3947 1.230324 GCACAGTGGTCAGGAAGAAC 58.770 55.000 1.84 0.00 0.00 3.01
2680 3948 0.108585 GGCACAGTGGTCAGGAAGAA 59.891 55.000 1.84 0.00 0.00 2.52
2681 3949 1.754745 GGCACAGTGGTCAGGAAGA 59.245 57.895 1.84 0.00 0.00 2.87
2682 3950 1.669115 CGGCACAGTGGTCAGGAAG 60.669 63.158 1.84 0.00 0.00 3.46
2683 3951 2.425592 CGGCACAGTGGTCAGGAA 59.574 61.111 1.84 0.00 0.00 3.36
2684 3952 4.314440 GCGGCACAGTGGTCAGGA 62.314 66.667 1.84 0.00 0.00 3.86
2685 3953 2.520465 TATGCGGCACAGTGGTCAGG 62.520 60.000 4.03 0.00 0.00 3.86
2686 3954 0.673333 TTATGCGGCACAGTGGTCAG 60.673 55.000 4.03 0.00 0.00 3.51
2687 3955 0.673333 CTTATGCGGCACAGTGGTCA 60.673 55.000 4.03 0.00 0.00 4.02
2688 3956 1.369091 CCTTATGCGGCACAGTGGTC 61.369 60.000 4.03 0.00 0.00 4.02
2689 3957 1.377202 CCTTATGCGGCACAGTGGT 60.377 57.895 4.03 0.00 0.00 4.16
2690 3958 3.501396 CCTTATGCGGCACAGTGG 58.499 61.111 4.03 1.54 0.00 4.00
2698 3966 1.447317 GACCATGTGGCCTTATGCGG 61.447 60.000 3.32 0.00 42.61 5.69
2699 3967 1.447317 GGACCATGTGGCCTTATGCG 61.447 60.000 3.32 5.66 42.61 4.73
2700 3968 0.395586 TGGACCATGTGGCCTTATGC 60.396 55.000 3.32 0.00 39.32 3.14
2701 3969 2.026641 CTTGGACCATGTGGCCTTATG 58.973 52.381 3.32 8.58 39.32 1.90
2702 3970 1.686115 GCTTGGACCATGTGGCCTTAT 60.686 52.381 3.32 0.00 39.32 1.73
2703 3971 0.323360 GCTTGGACCATGTGGCCTTA 60.323 55.000 3.32 0.00 39.32 2.69
2704 3972 1.607467 GCTTGGACCATGTGGCCTT 60.607 57.895 3.32 0.00 39.32 4.35
2705 3973 2.036256 GCTTGGACCATGTGGCCT 59.964 61.111 3.32 0.00 39.32 5.19
2706 3974 2.283101 TGCTTGGACCATGTGGCC 60.283 61.111 9.01 0.00 39.32 5.36
2707 3975 2.639327 GGTGCTTGGACCATGTGGC 61.639 63.158 6.43 5.92 39.32 5.01
2708 3976 0.540365 AAGGTGCTTGGACCATGTGG 60.540 55.000 13.55 0.00 38.63 4.17
2709 3977 0.599558 CAAGGTGCTTGGACCATGTG 59.400 55.000 13.55 4.98 37.77 3.21
2710 3978 0.185901 ACAAGGTGCTTGGACCATGT 59.814 50.000 14.64 14.64 44.81 3.21
2711 3979 1.000060 CAACAAGGTGCTTGGACCATG 60.000 52.381 13.55 13.51 44.81 3.66
2712 3980 1.331214 CAACAAGGTGCTTGGACCAT 58.669 50.000 13.55 0.00 44.81 3.55
2713 3981 1.391157 GCAACAAGGTGCTTGGACCA 61.391 55.000 13.55 0.00 44.81 4.02
2714 3982 1.363807 GCAACAAGGTGCTTGGACC 59.636 57.895 2.20 2.97 44.81 4.46
2715 3983 1.363807 GGCAACAAGGTGCTTGGAC 59.636 57.895 10.24 0.00 44.81 4.02
2716 3984 1.832167 GGGCAACAAGGTGCTTGGA 60.832 57.895 10.24 0.00 44.81 3.53
2717 3985 2.736531 GGGCAACAAGGTGCTTGG 59.263 61.111 10.24 0.00 44.81 3.61
2718 3986 0.539438 TAGGGGCAACAAGGTGCTTG 60.539 55.000 10.24 0.00 45.85 4.01
2719 3987 1.850549 TAGGGGCAACAAGGTGCTT 59.149 52.632 10.24 0.00 44.31 3.91
2720 3988 3.587840 TAGGGGCAACAAGGTGCT 58.412 55.556 10.24 0.00 44.31 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.