Multiple sequence alignment - TraesCS3D01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G318400 chr3D 100.000 4128 0 0 1 4128 432133660 432137787 0.000000e+00 7624.0
1 TraesCS3D01G318400 chr3D 93.939 66 0 3 1443 1508 432135072 432135133 3.400000e-16 97.1
2 TraesCS3D01G318400 chr3D 93.939 66 0 3 1413 1474 432135102 432135167 3.400000e-16 97.1
3 TraesCS3D01G318400 chr3B 94.683 1768 74 13 1330 3086 564318990 564320748 0.000000e+00 2726.0
4 TraesCS3D01G318400 chr3B 97.403 539 9 3 3100 3638 564338717 564339250 0.000000e+00 913.0
5 TraesCS3D01G318400 chr3B 95.678 509 17 4 941 1444 564318654 564319162 0.000000e+00 813.0
6 TraesCS3D01G318400 chr3B 95.468 331 14 1 21 350 564316996 564317326 1.020000e-145 527.0
7 TraesCS3D01G318400 chr3B 90.068 292 18 5 635 922 564317794 564318078 6.520000e-98 368.0
8 TraesCS3D01G318400 chr3B 96.875 96 2 1 4034 4128 564339239 564339334 4.270000e-35 159.0
9 TraesCS3D01G318400 chr3B 93.750 96 3 2 338 433 564317678 564317770 1.550000e-29 141.0
10 TraesCS3D01G318400 chr3B 88.571 70 5 3 3178 3246 148077155 148077088 9.510000e-12 82.4
11 TraesCS3D01G318400 chr3A 96.476 1277 37 4 1882 3157 569626766 569628035 0.000000e+00 2102.0
12 TraesCS3D01G318400 chr3A 93.304 896 38 11 31 921 569621988 569622866 0.000000e+00 1303.0
13 TraesCS3D01G318400 chr3A 95.266 507 19 3 941 1443 569625850 569626355 0.000000e+00 798.0
14 TraesCS3D01G318400 chr3A 91.832 404 22 6 3637 4030 724462741 724463143 1.680000e-153 553.0
15 TraesCS3D01G318400 chr3A 97.207 179 5 0 1718 1896 569626416 569626594 1.860000e-78 303.0
16 TraesCS3D01G318400 chr3A 97.333 150 4 0 3245 3394 569628020 569628169 5.300000e-64 255.0
17 TraesCS3D01G318400 chr5D 91.667 408 22 6 3637 4034 429920743 429921148 4.660000e-154 555.0
18 TraesCS3D01G318400 chr5D 89.277 401 38 5 3637 4035 381499665 381499268 7.970000e-137 497.0
19 TraesCS3D01G318400 chr5D 76.009 446 101 6 1490 1932 42556293 42556735 4.150000e-55 226.0
20 TraesCS3D01G318400 chr5D 76.276 392 91 1 1541 1932 15353750 15354139 1.500000e-49 207.0
21 TraesCS3D01G318400 chr5D 71.612 937 213 38 1953 2867 42556783 42557688 1.500000e-49 207.0
22 TraesCS3D01G318400 chr5D 75.297 421 96 4 1541 1960 15126701 15127114 1.170000e-45 195.0
23 TraesCS3D01G318400 chr5D 96.154 52 0 2 3193 3244 399698764 399698813 2.640000e-12 84.2
24 TraesCS3D01G318400 chr7B 90.244 410 26 7 3637 4033 610778652 610779060 1.310000e-144 523.0
25 TraesCS3D01G318400 chr7B 78.947 190 29 9 3405 3590 633323321 633323139 7.250000e-23 119.0
26 TraesCS3D01G318400 chr7B 94.231 52 3 0 3194 3245 578668107 578668056 3.420000e-11 80.5
27 TraesCS3D01G318400 chr2D 90.428 397 32 4 3637 4032 300424935 300424544 6.120000e-143 518.0
28 TraesCS3D01G318400 chr2D 89.578 403 26 11 3637 4029 197490819 197491215 7.970000e-137 497.0
29 TraesCS3D01G318400 chr2D 82.812 192 27 6 3399 3587 95774773 95774961 2.550000e-37 167.0
30 TraesCS3D01G318400 chr2D 87.500 80 5 4 3511 3590 5931639 5931565 2.040000e-13 87.9
31 TraesCS3D01G318400 chr2D 90.164 61 3 3 3197 3256 524698027 524697969 4.420000e-10 76.8
32 TraesCS3D01G318400 chr7D 89.578 403 36 5 3637 4036 483277664 483277265 1.320000e-139 507.0
33 TraesCS3D01G318400 chr1A 89.051 411 30 9 3637 4033 146949974 146950383 2.870000e-136 496.0
34 TraesCS3D01G318400 chr1A 71.750 1377 300 48 1477 2792 392528832 392527484 5.180000e-79 305.0
35 TraesCS3D01G318400 chr1A 76.077 209 42 8 2580 2784 47824635 47824431 7.300000e-18 102.0
36 TraesCS3D01G318400 chr1A 82.653 98 17 0 2580 2677 47210369 47210272 2.040000e-13 87.9
37 TraesCS3D01G318400 chr6B 88.333 420 38 11 3628 4042 46930478 46930065 1.030000e-135 494.0
38 TraesCS3D01G318400 chr1B 71.907 1374 291 51 1477 2786 423208947 423207605 1.110000e-80 311.0
39 TraesCS3D01G318400 chr1D 71.699 1371 299 46 1477 2786 312972498 312971156 2.410000e-77 300.0
40 TraesCS3D01G318400 chr1D 72.989 348 78 11 2580 2917 48022118 48021777 1.570000e-19 108.0
41 TraesCS3D01G318400 chr1D 83.654 104 17 0 2574 2677 47328446 47328343 9.440000e-17 99.0
42 TraesCS3D01G318400 chr1D 86.792 53 7 0 3405 3457 313564609 313564557 4.460000e-05 60.2
43 TraesCS3D01G318400 chr5B 76.845 393 89 2 1541 1932 37058741 37058350 1.930000e-53 220.0
44 TraesCS3D01G318400 chr5B 94.231 52 2 1 3193 3244 648270635 648270685 1.230000e-10 78.7
45 TraesCS3D01G318400 chr6A 77.901 181 33 6 3404 3580 587911183 587911360 5.640000e-19 106.0
46 TraesCS3D01G318400 chr7A 92.453 53 3 1 3194 3246 10012946 10012997 1.590000e-09 75.0
47 TraesCS3D01G318400 chr2B 91.071 56 4 1 3191 3246 397202145 397202199 1.590000e-09 75.0
48 TraesCS3D01G318400 chr4B 90.566 53 3 2 3197 3249 219768596 219768546 7.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G318400 chr3D 432133660 432137787 4127 False 2606.066667 7624 95.959333 1 4128 3 chr3D.!!$F1 4127
1 TraesCS3D01G318400 chr3B 564316996 564320748 3752 False 915.000000 2726 93.929400 21 3086 5 chr3B.!!$F1 3065
2 TraesCS3D01G318400 chr3B 564338717 564339334 617 False 536.000000 913 97.139000 3100 4128 2 chr3B.!!$F2 1028
3 TraesCS3D01G318400 chr3A 569621988 569628169 6181 False 952.200000 2102 95.917200 31 3394 5 chr3A.!!$F2 3363
4 TraesCS3D01G318400 chr5D 42556293 42557688 1395 False 216.500000 226 73.810500 1490 2867 2 chr5D.!!$F5 1377
5 TraesCS3D01G318400 chr1A 392527484 392528832 1348 True 305.000000 305 71.750000 1477 2792 1 chr1A.!!$R3 1315
6 TraesCS3D01G318400 chr1B 423207605 423208947 1342 True 311.000000 311 71.907000 1477 2786 1 chr1B.!!$R1 1309
7 TraesCS3D01G318400 chr1D 312971156 312972498 1342 True 300.000000 300 71.699000 1477 2786 1 chr1D.!!$R3 1309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 190 0.253894 CCATCCTGCCACTGTCATCA 59.746 55.000 0.0 0.0 0.00 3.07 F
198 200 0.767375 ACTGTCATCACCCTGCACTT 59.233 50.000 0.0 0.0 0.00 3.16 F
1398 4738 0.981183 ACGGACTAGTTCCAATGCCA 59.019 50.000 0.0 0.0 46.29 4.92 F
2043 5608 2.042831 CCCTTTCAGGCTTGGAGCG 61.043 63.158 0.0 0.0 43.62 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 4548 0.955428 ATCGACAGCGCCAATGTGTT 60.955 50.000 2.29 0.0 37.46 3.32 R
1524 4864 2.414824 GCCTAGAAGAGTCACACAGTCG 60.415 54.545 0.00 0.0 0.00 4.18 R
2343 5916 0.870393 ACATTGCTTCACTCTGTGCG 59.130 50.000 0.00 0.0 32.98 5.34 R
3904 7521 0.035439 GAGACCCGCTCCAAATTCCA 60.035 55.000 0.00 0.0 37.69 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 4.822026 TGCTCTTCTCTAGGCTGTTTAAC 58.178 43.478 0.00 0.00 0.00 2.01
141 143 1.746760 CTCTTCACACACGCTTTTGC 58.253 50.000 0.00 0.00 43.23 3.68
188 190 0.253894 CCATCCTGCCACTGTCATCA 59.746 55.000 0.00 0.00 0.00 3.07
198 200 0.767375 ACTGTCATCACCCTGCACTT 59.233 50.000 0.00 0.00 0.00 3.16
225 227 9.704098 GTACTAATGTTTGCTAATCTAAACTGC 57.296 33.333 0.00 0.00 37.60 4.40
231 233 4.685169 TGCTAATCTAAACTGCTGTTGC 57.315 40.909 9.95 7.61 36.39 4.17
249 251 5.479306 TGTTGCTGTTCTTGTACTATCTCC 58.521 41.667 0.00 0.00 0.00 3.71
423 789 6.177610 TGCTTCTCGTTGGTCCTTATTTATT 58.822 36.000 0.00 0.00 0.00 1.40
479 845 7.095910 TCTCAAATCAGCTGAAACAAAACAAA 58.904 30.769 22.50 0.00 0.00 2.83
480 846 7.601886 TCTCAAATCAGCTGAAACAAAACAAAA 59.398 29.630 22.50 0.00 0.00 2.44
484 850 6.464895 TCAGCTGAAACAAAACAAAAACAG 57.535 33.333 15.67 0.00 0.00 3.16
538 904 9.257651 GTAGCTTATCAATGTTACTTTATCGGT 57.742 33.333 0.00 0.00 0.00 4.69
554 920 1.562575 CGGTGTGGTGCCTCGTTTAC 61.563 60.000 0.00 0.00 0.00 2.01
570 936 9.209175 GCCTCGTTTACATCTTATCTTGATAAT 57.791 33.333 3.86 0.00 0.00 1.28
617 984 7.203218 GCTCTTTTGAACAATCCTTTACTGTT 58.797 34.615 0.00 0.00 36.02 3.16
674 1041 8.575649 AAGTTATTTCAAACGGACCTATCAAT 57.424 30.769 0.00 0.00 34.46 2.57
686 1054 7.159372 ACGGACCTATCAATGATAACCATAAC 58.841 38.462 4.37 0.00 34.45 1.89
781 1149 6.043706 AGCTATGTCAAACTATCCTATTGGCT 59.956 38.462 0.00 0.00 30.27 4.75
896 1268 3.159213 TGTCTGATGTTTTGCCAGGAT 57.841 42.857 0.00 0.00 0.00 3.24
922 1294 3.323115 TGATACAGCCATGGATCTCAGAC 59.677 47.826 18.40 0.00 45.77 3.51
924 1296 1.911357 ACAGCCATGGATCTCAGACAA 59.089 47.619 18.40 0.00 0.00 3.18
925 1297 2.093075 ACAGCCATGGATCTCAGACAAG 60.093 50.000 18.40 0.00 0.00 3.16
926 1298 2.093075 CAGCCATGGATCTCAGACAAGT 60.093 50.000 18.40 0.00 0.00 3.16
927 1299 2.093075 AGCCATGGATCTCAGACAAGTG 60.093 50.000 18.40 0.00 0.00 3.16
928 1300 2.915349 CCATGGATCTCAGACAAGTGG 58.085 52.381 5.56 0.00 0.00 4.00
929 1301 2.502947 CCATGGATCTCAGACAAGTGGA 59.497 50.000 5.56 0.00 0.00 4.02
930 1302 3.054875 CCATGGATCTCAGACAAGTGGAA 60.055 47.826 5.56 0.00 0.00 3.53
962 4298 6.891908 AGGATATAATGTTCTTGGTTGTGCTT 59.108 34.615 0.00 0.00 0.00 3.91
964 4300 7.148086 GGATATAATGTTCTTGGTTGTGCTTCA 60.148 37.037 0.00 0.00 0.00 3.02
1128 4465 9.802039 TTACAACCTTATTTGAGAACCATACTT 57.198 29.630 0.00 0.00 0.00 2.24
1211 4548 6.097915 AGTGATTAAACTCCGAGAAGAACA 57.902 37.500 1.33 0.00 0.00 3.18
1243 4580 4.045104 CGCTGTCGATGCTAACTCTAAAT 58.955 43.478 10.75 0.00 38.10 1.40
1278 4615 1.794714 ATGAGGCCCTCGAGTTACAT 58.205 50.000 12.31 6.81 32.35 2.29
1380 4720 6.652481 TGTTCAATCAAGAGGAAGATCAAGAC 59.348 38.462 0.00 0.00 0.00 3.01
1398 4738 0.981183 ACGGACTAGTTCCAATGCCA 59.019 50.000 0.00 0.00 46.29 4.92
1430 4770 2.915349 GCTCATGCAAGAGGAAGATCA 58.085 47.619 19.77 0.00 39.41 2.92
1431 4771 3.276857 GCTCATGCAAGAGGAAGATCAA 58.723 45.455 19.77 0.00 39.41 2.57
1432 4772 3.312973 GCTCATGCAAGAGGAAGATCAAG 59.687 47.826 19.77 0.00 39.41 3.02
1433 4773 3.878103 CTCATGCAAGAGGAAGATCAAGG 59.122 47.826 11.14 0.00 31.94 3.61
1434 4774 3.520721 TCATGCAAGAGGAAGATCAAGGA 59.479 43.478 0.00 0.00 0.00 3.36
1435 4775 3.623906 TGCAAGAGGAAGATCAAGGAG 57.376 47.619 0.00 0.00 0.00 3.69
1436 4776 3.176411 TGCAAGAGGAAGATCAAGGAGA 58.824 45.455 0.00 0.00 0.00 3.71
1437 4777 3.779183 TGCAAGAGGAAGATCAAGGAGAT 59.221 43.478 0.00 0.00 40.48 2.75
1438 4778 4.128643 GCAAGAGGAAGATCAAGGAGATG 58.871 47.826 0.00 0.00 37.00 2.90
1439 4779 4.141756 GCAAGAGGAAGATCAAGGAGATGA 60.142 45.833 0.00 0.00 37.00 2.92
1440 4780 5.455040 GCAAGAGGAAGATCAAGGAGATGAT 60.455 44.000 0.00 0.00 42.62 2.45
1441 4781 5.811796 AGAGGAAGATCAAGGAGATGATG 57.188 43.478 0.00 0.00 40.08 3.07
1442 4782 5.218179 AGAGGAAGATCAAGGAGATGATGT 58.782 41.667 0.00 0.00 40.08 3.06
1443 4783 5.305128 AGAGGAAGATCAAGGAGATGATGTC 59.695 44.000 0.00 0.00 40.08 3.06
1444 4784 4.967442 AGGAAGATCAAGGAGATGATGTCA 59.033 41.667 0.00 0.00 40.08 3.58
1445 4785 5.607592 AGGAAGATCAAGGAGATGATGTCAT 59.392 40.000 0.00 0.00 40.08 3.06
1446 4786 5.701750 GGAAGATCAAGGAGATGATGTCATG 59.298 44.000 0.00 0.00 40.08 3.07
1447 4787 4.643463 AGATCAAGGAGATGATGTCATGC 58.357 43.478 0.00 0.00 40.08 4.06
1448 4788 3.918294 TCAAGGAGATGATGTCATGCA 57.082 42.857 0.00 0.00 36.57 3.96
1449 4789 4.224991 TCAAGGAGATGATGTCATGCAA 57.775 40.909 0.00 0.00 36.57 4.08
1450 4790 4.196971 TCAAGGAGATGATGTCATGCAAG 58.803 43.478 0.00 0.00 36.57 4.01
1451 4791 4.080751 TCAAGGAGATGATGTCATGCAAGA 60.081 41.667 0.00 0.00 36.57 3.02
1452 4792 4.074627 AGGAGATGATGTCATGCAAGAG 57.925 45.455 0.00 0.00 36.57 2.85
1453 4793 3.139850 GGAGATGATGTCATGCAAGAGG 58.860 50.000 0.00 0.00 36.57 3.69
1454 4794 3.181457 GGAGATGATGTCATGCAAGAGGA 60.181 47.826 0.00 0.00 36.57 3.71
1455 4795 4.449131 GAGATGATGTCATGCAAGAGGAA 58.551 43.478 0.00 0.00 36.57 3.36
1456 4796 4.452825 AGATGATGTCATGCAAGAGGAAG 58.547 43.478 0.00 0.00 36.57 3.46
1457 4797 3.986996 TGATGTCATGCAAGAGGAAGA 57.013 42.857 0.00 0.00 0.00 2.87
1458 4798 4.498894 TGATGTCATGCAAGAGGAAGAT 57.501 40.909 0.00 0.00 0.00 2.40
1459 4799 4.449131 TGATGTCATGCAAGAGGAAGATC 58.551 43.478 0.00 0.00 0.00 2.75
1460 4800 3.986996 TGTCATGCAAGAGGAAGATCA 57.013 42.857 0.00 0.00 0.00 2.92
1461 4801 4.290711 TGTCATGCAAGAGGAAGATCAA 57.709 40.909 0.00 0.00 0.00 2.57
1462 4802 4.259356 TGTCATGCAAGAGGAAGATCAAG 58.741 43.478 0.00 0.00 0.00 3.02
1463 4803 3.626670 GTCATGCAAGAGGAAGATCAAGG 59.373 47.826 0.00 0.00 0.00 3.61
1464 4804 3.520721 TCATGCAAGAGGAAGATCAAGGA 59.479 43.478 0.00 0.00 0.00 3.36
1465 4805 3.623906 TGCAAGAGGAAGATCAAGGAG 57.376 47.619 0.00 0.00 0.00 3.69
1466 4806 3.176411 TGCAAGAGGAAGATCAAGGAGA 58.824 45.455 0.00 0.00 0.00 3.71
1467 4807 3.779183 TGCAAGAGGAAGATCAAGGAGAT 59.221 43.478 0.00 0.00 40.48 2.75
1468 4808 4.128643 GCAAGAGGAAGATCAAGGAGATG 58.871 47.826 0.00 0.00 37.00 2.90
1469 4809 4.141756 GCAAGAGGAAGATCAAGGAGATGA 60.142 45.833 0.00 0.00 37.00 2.92
1470 4810 5.455040 GCAAGAGGAAGATCAAGGAGATGAT 60.455 44.000 0.00 0.00 42.62 2.45
1471 4811 5.811796 AGAGGAAGATCAAGGAGATGATG 57.188 43.478 0.00 0.00 40.08 3.07
1472 4812 5.218179 AGAGGAAGATCAAGGAGATGATGT 58.782 41.667 0.00 0.00 40.08 3.06
1473 4813 5.305128 AGAGGAAGATCAAGGAGATGATGTC 59.695 44.000 0.00 0.00 40.08 3.06
1474 4814 4.967442 AGGAAGATCAAGGAGATGATGTCA 59.033 41.667 0.00 0.00 40.08 3.58
1475 4815 5.607592 AGGAAGATCAAGGAGATGATGTCAT 59.392 40.000 0.00 0.00 40.08 3.06
1524 4864 7.137490 TGATTGTCTTCTGAACATTGACATC 57.863 36.000 9.96 9.95 37.47 3.06
1537 4877 2.706555 TGACATCGACTGTGTGACTC 57.293 50.000 5.41 0.00 38.54 3.36
1599 4939 3.033184 CCCCCTTGTGATGCAATGTATT 58.967 45.455 0.00 0.00 36.36 1.89
1800 5152 4.545610 TGTTTAAGCTTCTGCATTTTCCG 58.454 39.130 0.00 0.00 42.74 4.30
1967 5532 4.021229 TCAATGCCATCTGAGCTTTCATT 58.979 39.130 0.00 0.00 0.00 2.57
2043 5608 2.042831 CCCTTTCAGGCTTGGAGCG 61.043 63.158 0.00 0.00 43.62 5.03
2343 5916 4.272748 GTCTTGGTTTGTGACAGTTCTACC 59.727 45.833 0.00 0.00 0.00 3.18
2405 5978 1.153168 CTAATGCCACCGGTCCAGG 60.153 63.158 2.59 4.11 37.30 4.45
2868 6484 1.146930 CCGGAGCAGGTGCACATAT 59.853 57.895 20.43 3.29 45.16 1.78
2940 6556 5.184864 CCATAGCACCACCAAGATGTAAAAA 59.815 40.000 0.00 0.00 0.00 1.94
3548 7165 3.560025 GGTGGTGCTCATAAGGATATGGG 60.560 52.174 0.00 0.00 42.06 4.00
3549 7166 3.073062 GTGGTGCTCATAAGGATATGGGT 59.927 47.826 0.00 0.00 41.34 4.51
3582 7199 4.498513 CGTGCGTTCATAAGGGTGAGTATA 60.499 45.833 0.00 0.00 0.00 1.47
3583 7200 5.539048 GTGCGTTCATAAGGGTGAGTATAT 58.461 41.667 0.00 0.00 0.00 0.86
3653 7270 7.287050 GATTTTTGAAAATCCATCTCTGCAC 57.713 36.000 15.13 0.00 45.29 4.57
3654 7271 4.789012 TTTGAAAATCCATCTCTGCACC 57.211 40.909 0.00 0.00 0.00 5.01
3655 7272 2.726821 TGAAAATCCATCTCTGCACCC 58.273 47.619 0.00 0.00 0.00 4.61
3656 7273 1.672881 GAAAATCCATCTCTGCACCCG 59.327 52.381 0.00 0.00 0.00 5.28
3657 7274 0.911769 AAATCCATCTCTGCACCCGA 59.088 50.000 0.00 0.00 0.00 5.14
3658 7275 0.467384 AATCCATCTCTGCACCCGAG 59.533 55.000 0.00 0.00 0.00 4.63
3659 7276 2.037620 ATCCATCTCTGCACCCGAGC 62.038 60.000 0.00 0.00 0.00 5.03
3660 7277 2.729479 CCATCTCTGCACCCGAGCT 61.729 63.158 0.00 0.00 34.99 4.09
3661 7278 1.227205 CATCTCTGCACCCGAGCTC 60.227 63.158 2.73 2.73 34.99 4.09
3662 7279 1.683707 ATCTCTGCACCCGAGCTCA 60.684 57.895 15.40 0.00 34.99 4.26
3663 7280 1.047596 ATCTCTGCACCCGAGCTCAT 61.048 55.000 15.40 0.00 34.99 2.90
3664 7281 1.227205 CTCTGCACCCGAGCTCATC 60.227 63.158 15.40 0.00 34.99 2.92
3665 7282 1.674764 CTCTGCACCCGAGCTCATCT 61.675 60.000 15.40 0.00 34.99 2.90
3666 7283 1.521010 CTGCACCCGAGCTCATCTG 60.521 63.158 15.40 5.86 34.99 2.90
3667 7284 2.894387 GCACCCGAGCTCATCTGC 60.894 66.667 15.40 12.21 0.00 4.26
3668 7285 2.580815 CACCCGAGCTCATCTGCA 59.419 61.111 15.40 0.00 34.99 4.41
3669 7286 1.812922 CACCCGAGCTCATCTGCAC 60.813 63.158 15.40 0.00 34.99 4.57
3670 7287 1.986757 ACCCGAGCTCATCTGCACT 60.987 57.895 15.40 0.00 34.99 4.40
3671 7288 1.227205 CCCGAGCTCATCTGCACTC 60.227 63.158 15.40 0.00 34.99 3.51
3672 7289 3.994587 CGAGCTCATCTGCACTCG 58.005 61.111 15.40 7.62 45.02 4.18
3674 7291 3.255017 GAGCTCATCTGCACTCGAG 57.745 57.895 11.84 11.84 34.99 4.04
3675 7292 3.703547 GCTCATCTGCACTCGAGC 58.296 61.111 13.61 9.91 43.60 5.03
3676 7293 1.141449 GCTCATCTGCACTCGAGCT 59.859 57.895 13.61 0.00 45.86 4.09
3677 7294 1.146957 GCTCATCTGCACTCGAGCTG 61.147 60.000 13.61 11.23 45.86 4.24
3678 7295 0.455005 CTCATCTGCACTCGAGCTGA 59.545 55.000 13.61 10.48 44.70 4.26
3679 7296 0.172127 TCATCTGCACTCGAGCTGAC 59.828 55.000 13.61 7.27 43.67 3.51
3680 7297 1.138459 ATCTGCACTCGAGCTGACG 59.862 57.895 13.61 5.25 43.67 4.35
3681 7298 1.308783 ATCTGCACTCGAGCTGACGA 61.309 55.000 13.61 9.94 43.67 4.20
3682 7299 1.081175 CTGCACTCGAGCTGACGAA 60.081 57.895 13.61 0.00 41.67 3.85
3683 7300 0.664466 CTGCACTCGAGCTGACGAAA 60.664 55.000 13.61 0.00 41.67 3.46
3684 7301 0.249280 TGCACTCGAGCTGACGAAAA 60.249 50.000 13.61 0.00 41.67 2.29
3685 7302 0.859232 GCACTCGAGCTGACGAAAAA 59.141 50.000 13.61 0.00 41.67 1.94
3750 7367 6.654793 TTTGTGTGGTAGAAAATTTGTTGC 57.345 33.333 0.00 0.00 0.00 4.17
3751 7368 4.355437 TGTGTGGTAGAAAATTTGTTGCG 58.645 39.130 0.00 0.00 0.00 4.85
3752 7369 4.142359 TGTGTGGTAGAAAATTTGTTGCGT 60.142 37.500 0.00 0.00 0.00 5.24
3753 7370 4.206200 GTGTGGTAGAAAATTTGTTGCGTG 59.794 41.667 0.00 0.00 0.00 5.34
3754 7371 4.096532 TGTGGTAGAAAATTTGTTGCGTGA 59.903 37.500 0.00 0.00 0.00 4.35
3755 7372 4.675114 GTGGTAGAAAATTTGTTGCGTGAG 59.325 41.667 0.00 0.00 0.00 3.51
3756 7373 4.576873 TGGTAGAAAATTTGTTGCGTGAGA 59.423 37.500 0.00 0.00 0.00 3.27
3757 7374 4.909880 GGTAGAAAATTTGTTGCGTGAGAC 59.090 41.667 0.00 0.00 0.00 3.36
3758 7375 3.964909 AGAAAATTTGTTGCGTGAGACC 58.035 40.909 0.00 0.00 0.00 3.85
3759 7376 2.793278 AAATTTGTTGCGTGAGACCC 57.207 45.000 0.00 0.00 0.00 4.46
3760 7377 0.591170 AATTTGTTGCGTGAGACCCG 59.409 50.000 0.00 0.00 0.00 5.28
3767 7384 2.342279 CGTGAGACCCGCTCCAAA 59.658 61.111 0.00 0.00 43.26 3.28
3768 7385 1.079127 CGTGAGACCCGCTCCAAAT 60.079 57.895 0.00 0.00 43.26 2.32
3769 7386 0.673644 CGTGAGACCCGCTCCAAATT 60.674 55.000 0.00 0.00 43.26 1.82
3770 7387 1.534729 GTGAGACCCGCTCCAAATTT 58.465 50.000 0.00 0.00 43.26 1.82
3771 7388 1.468914 GTGAGACCCGCTCCAAATTTC 59.531 52.381 0.00 0.00 43.26 2.17
3772 7389 1.073125 TGAGACCCGCTCCAAATTTCA 59.927 47.619 0.00 0.00 43.26 2.69
3773 7390 2.159382 GAGACCCGCTCCAAATTTCAA 58.841 47.619 0.00 0.00 37.69 2.69
3774 7391 2.162408 GAGACCCGCTCCAAATTTCAAG 59.838 50.000 0.00 0.00 37.69 3.02
3775 7392 1.886542 GACCCGCTCCAAATTTCAAGT 59.113 47.619 0.00 0.00 0.00 3.16
3776 7393 1.886542 ACCCGCTCCAAATTTCAAGTC 59.113 47.619 0.00 0.00 0.00 3.01
3777 7394 1.885887 CCCGCTCCAAATTTCAAGTCA 59.114 47.619 0.00 0.00 0.00 3.41
3778 7395 2.493278 CCCGCTCCAAATTTCAAGTCAT 59.507 45.455 0.00 0.00 0.00 3.06
3779 7396 3.056607 CCCGCTCCAAATTTCAAGTCATT 60.057 43.478 0.00 0.00 0.00 2.57
3780 7397 4.559153 CCGCTCCAAATTTCAAGTCATTT 58.441 39.130 0.00 0.00 0.00 2.32
3781 7398 4.386652 CCGCTCCAAATTTCAAGTCATTTG 59.613 41.667 0.00 0.00 39.25 2.32
3793 7410 8.750515 TTTCAAGTCATTTGGATATATGAGCA 57.249 30.769 0.00 0.00 37.39 4.26
3794 7411 7.974482 TCAAGTCATTTGGATATATGAGCAG 57.026 36.000 0.00 0.00 37.39 4.24
3795 7412 6.429078 TCAAGTCATTTGGATATATGAGCAGC 59.571 38.462 0.00 0.00 37.39 5.25
3796 7413 6.124316 AGTCATTTGGATATATGAGCAGCT 57.876 37.500 0.00 0.00 31.81 4.24
3797 7414 6.171921 AGTCATTTGGATATATGAGCAGCTC 58.828 40.000 16.21 16.21 31.81 4.09
3798 7415 6.013553 AGTCATTTGGATATATGAGCAGCTCT 60.014 38.462 23.15 11.20 31.81 4.09
3799 7416 6.313411 GTCATTTGGATATATGAGCAGCTCTC 59.687 42.308 23.15 11.57 42.23 3.20
3800 7417 4.446994 TTGGATATATGAGCAGCTCTCG 57.553 45.455 23.15 0.00 44.86 4.04
3801 7418 2.757314 TGGATATATGAGCAGCTCTCGG 59.243 50.000 23.15 0.00 44.86 4.63
3802 7419 2.481104 GGATATATGAGCAGCTCTCGGC 60.481 54.545 23.15 7.79 44.86 5.54
3803 7420 1.620822 TATATGAGCAGCTCTCGGCA 58.379 50.000 23.15 3.43 44.86 5.69
3804 7421 0.755079 ATATGAGCAGCTCTCGGCAA 59.245 50.000 23.15 1.92 44.86 4.52
3805 7422 0.536724 TATGAGCAGCTCTCGGCAAA 59.463 50.000 23.15 1.14 44.86 3.68
3806 7423 0.321919 ATGAGCAGCTCTCGGCAAAA 60.322 50.000 23.15 0.35 44.86 2.44
3807 7424 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
3827 7444 5.959583 AAAAGACAAATTGGGGGTTTGTA 57.040 34.783 4.43 0.00 46.51 2.41
3828 7445 5.959583 AAAGACAAATTGGGGGTTTGTAA 57.040 34.783 4.43 0.00 46.51 2.41
3829 7446 5.959583 AAGACAAATTGGGGGTTTGTAAA 57.040 34.783 4.43 0.00 46.51 2.01
3830 7447 5.959583 AGACAAATTGGGGGTTTGTAAAA 57.040 34.783 4.43 0.00 46.51 1.52
3831 7448 6.314899 AGACAAATTGGGGGTTTGTAAAAA 57.685 33.333 4.43 0.00 46.51 1.94
3832 7449 6.905736 AGACAAATTGGGGGTTTGTAAAAAT 58.094 32.000 4.43 0.00 46.51 1.82
3833 7450 6.770303 AGACAAATTGGGGGTTTGTAAAAATG 59.230 34.615 4.43 0.00 46.51 2.32
3834 7451 6.427441 ACAAATTGGGGGTTTGTAAAAATGT 58.573 32.000 0.00 0.00 45.19 2.71
3835 7452 6.892456 ACAAATTGGGGGTTTGTAAAAATGTT 59.108 30.769 0.00 0.00 45.19 2.71
3836 7453 7.397476 ACAAATTGGGGGTTTGTAAAAATGTTT 59.603 29.630 0.00 0.00 45.19 2.83
3837 7454 8.903820 CAAATTGGGGGTTTGTAAAAATGTTTA 58.096 29.630 0.00 0.00 33.12 2.01
3838 7455 8.453238 AATTGGGGGTTTGTAAAAATGTTTAC 57.547 30.769 11.06 11.06 46.31 2.01
3839 7456 6.809976 TGGGGGTTTGTAAAAATGTTTACT 57.190 33.333 17.45 0.00 46.29 2.24
3840 7457 6.583562 TGGGGGTTTGTAAAAATGTTTACTG 58.416 36.000 17.45 0.00 46.29 2.74
3841 7458 6.156429 TGGGGGTTTGTAAAAATGTTTACTGT 59.844 34.615 17.45 0.00 46.29 3.55
3842 7459 7.049133 GGGGGTTTGTAAAAATGTTTACTGTT 58.951 34.615 17.45 0.00 46.29 3.16
3843 7460 7.225145 GGGGGTTTGTAAAAATGTTTACTGTTC 59.775 37.037 17.45 6.91 46.29 3.18
3844 7461 7.764901 GGGGTTTGTAAAAATGTTTACTGTTCA 59.235 33.333 17.45 0.00 46.29 3.18
3845 7462 9.320352 GGGTTTGTAAAAATGTTTACTGTTCAT 57.680 29.630 17.45 0.00 46.29 2.57
3857 7474 9.730420 ATGTTTACTGTTCATGTACTTTTTGAC 57.270 29.630 4.01 0.00 0.00 3.18
3858 7475 8.185505 TGTTTACTGTTCATGTACTTTTTGACC 58.814 33.333 4.01 0.00 0.00 4.02
3859 7476 5.767816 ACTGTTCATGTACTTTTTGACCC 57.232 39.130 4.01 0.00 0.00 4.46
3860 7477 4.274950 ACTGTTCATGTACTTTTTGACCCG 59.725 41.667 4.01 0.00 0.00 5.28
3861 7478 4.452825 TGTTCATGTACTTTTTGACCCGA 58.547 39.130 4.01 0.00 0.00 5.14
3862 7479 5.067273 TGTTCATGTACTTTTTGACCCGAT 58.933 37.500 4.01 0.00 0.00 4.18
3863 7480 5.533154 TGTTCATGTACTTTTTGACCCGATT 59.467 36.000 4.01 0.00 0.00 3.34
3864 7481 6.039941 TGTTCATGTACTTTTTGACCCGATTT 59.960 34.615 4.01 0.00 0.00 2.17
3865 7482 6.007936 TCATGTACTTTTTGACCCGATTTG 57.992 37.500 0.00 0.00 0.00 2.32
3866 7483 5.533154 TCATGTACTTTTTGACCCGATTTGT 59.467 36.000 0.00 0.00 0.00 2.83
3867 7484 5.427036 TGTACTTTTTGACCCGATTTGTC 57.573 39.130 0.00 0.00 0.00 3.18
3868 7485 5.127491 TGTACTTTTTGACCCGATTTGTCT 58.873 37.500 0.00 0.00 33.83 3.41
3869 7486 5.591067 TGTACTTTTTGACCCGATTTGTCTT 59.409 36.000 0.00 0.00 33.83 3.01
3870 7487 5.592104 ACTTTTTGACCCGATTTGTCTTT 57.408 34.783 0.00 0.00 33.83 2.52
3871 7488 5.972935 ACTTTTTGACCCGATTTGTCTTTT 58.027 33.333 0.00 0.00 33.83 2.27
3872 7489 6.403049 ACTTTTTGACCCGATTTGTCTTTTT 58.597 32.000 0.00 0.00 33.83 1.94
3897 7514 3.325293 GAGAGTTGCTCAGATGTCCAA 57.675 47.619 0.00 0.00 43.38 3.53
3898 7515 3.668447 GAGAGTTGCTCAGATGTCCAAA 58.332 45.455 0.00 0.00 43.38 3.28
3899 7516 4.260170 GAGAGTTGCTCAGATGTCCAAAT 58.740 43.478 0.00 0.00 43.38 2.32
3900 7517 4.008330 AGAGTTGCTCAGATGTCCAAATG 58.992 43.478 0.00 0.00 32.06 2.32
3901 7518 3.087031 AGTTGCTCAGATGTCCAAATGG 58.913 45.455 0.00 0.00 0.00 3.16
3902 7519 1.466856 TGCTCAGATGTCCAAATGGC 58.533 50.000 0.00 0.00 34.44 4.40
3903 7520 1.005097 TGCTCAGATGTCCAAATGGCT 59.995 47.619 0.00 0.00 34.44 4.75
3904 7521 2.097825 GCTCAGATGTCCAAATGGCTT 58.902 47.619 0.00 0.00 34.44 4.35
3905 7522 2.159282 GCTCAGATGTCCAAATGGCTTG 60.159 50.000 0.00 0.00 34.44 4.01
3916 7533 3.004862 CAAATGGCTTGGAATTTGGAGC 58.995 45.455 0.00 0.00 39.19 4.70
3917 7534 0.819582 ATGGCTTGGAATTTGGAGCG 59.180 50.000 0.00 0.00 36.02 5.03
3918 7535 1.250154 TGGCTTGGAATTTGGAGCGG 61.250 55.000 0.00 0.00 36.02 5.52
3919 7536 1.512694 GCTTGGAATTTGGAGCGGG 59.487 57.895 0.00 0.00 0.00 6.13
3920 7537 1.250840 GCTTGGAATTTGGAGCGGGT 61.251 55.000 0.00 0.00 0.00 5.28
3921 7538 0.811281 CTTGGAATTTGGAGCGGGTC 59.189 55.000 0.00 0.00 0.00 4.46
3922 7539 0.404040 TTGGAATTTGGAGCGGGTCT 59.596 50.000 7.19 0.00 0.00 3.85
3923 7540 0.035439 TGGAATTTGGAGCGGGTCTC 60.035 55.000 7.19 0.00 41.15 3.36
3924 7541 0.035439 GGAATTTGGAGCGGGTCTCA 60.035 55.000 7.19 0.97 43.70 3.27
3925 7542 1.087501 GAATTTGGAGCGGGTCTCAC 58.912 55.000 7.19 0.00 43.70 3.51
3926 7543 0.673644 AATTTGGAGCGGGTCTCACG 60.674 55.000 7.19 0.00 43.70 4.35
3933 7550 4.277239 CGGGTCTCACGCATCAAA 57.723 55.556 0.00 0.00 0.00 2.69
3934 7551 2.767536 CGGGTCTCACGCATCAAAT 58.232 52.632 0.00 0.00 0.00 2.32
3935 7552 1.086696 CGGGTCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
3936 7553 1.468520 CGGGTCTCACGCATCAAATTT 59.531 47.619 0.00 0.00 0.00 1.82
3937 7554 2.095263 CGGGTCTCACGCATCAAATTTT 60.095 45.455 0.00 0.00 0.00 1.82
3938 7555 3.501950 GGGTCTCACGCATCAAATTTTC 58.498 45.455 0.00 0.00 0.00 2.29
3939 7556 3.191371 GGGTCTCACGCATCAAATTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
3940 7557 4.394920 GGGTCTCACGCATCAAATTTTCTA 59.605 41.667 0.00 0.00 0.00 2.10
3941 7558 5.324697 GGTCTCACGCATCAAATTTTCTAC 58.675 41.667 0.00 0.00 0.00 2.59
3942 7559 5.324697 GTCTCACGCATCAAATTTTCTACC 58.675 41.667 0.00 0.00 0.00 3.18
3943 7560 5.000591 TCTCACGCATCAAATTTTCTACCA 58.999 37.500 0.00 0.00 0.00 3.25
3944 7561 5.041951 TCACGCATCAAATTTTCTACCAC 57.958 39.130 0.00 0.00 0.00 4.16
3945 7562 4.517075 TCACGCATCAAATTTTCTACCACA 59.483 37.500 0.00 0.00 0.00 4.17
3946 7563 4.616802 CACGCATCAAATTTTCTACCACAC 59.383 41.667 0.00 0.00 0.00 3.82
3947 7564 4.277174 ACGCATCAAATTTTCTACCACACA 59.723 37.500 0.00 0.00 0.00 3.72
3948 7565 5.218885 CGCATCAAATTTTCTACCACACAA 58.781 37.500 0.00 0.00 0.00 3.33
3949 7566 5.689514 CGCATCAAATTTTCTACCACACAAA 59.310 36.000 0.00 0.00 0.00 2.83
3950 7567 6.199908 CGCATCAAATTTTCTACCACACAAAA 59.800 34.615 0.00 0.00 0.00 2.44
3951 7568 7.566709 GCATCAAATTTTCTACCACACAAAAG 58.433 34.615 0.00 0.00 0.00 2.27
3952 7569 7.224557 GCATCAAATTTTCTACCACACAAAAGT 59.775 33.333 0.00 0.00 0.00 2.66
3953 7570 9.097257 CATCAAATTTTCTACCACACAAAAGTT 57.903 29.630 0.00 0.00 29.81 2.66
3954 7571 9.665719 ATCAAATTTTCTACCACACAAAAGTTT 57.334 25.926 0.00 0.00 27.84 2.66
3955 7572 9.495572 TCAAATTTTCTACCACACAAAAGTTTT 57.504 25.926 0.00 0.00 27.84 2.43
4002 7619 3.823369 TTTTTCCTAACCGGGTGCA 57.177 47.368 0.00 0.00 0.00 4.57
4003 7620 2.068834 TTTTTCCTAACCGGGTGCAA 57.931 45.000 0.00 0.00 0.00 4.08
4004 7621 2.068834 TTTTCCTAACCGGGTGCAAA 57.931 45.000 0.00 0.00 0.00 3.68
4005 7622 2.296073 TTTCCTAACCGGGTGCAAAT 57.704 45.000 0.00 0.00 0.00 2.32
4006 7623 1.540267 TTCCTAACCGGGTGCAAATG 58.460 50.000 0.00 0.00 0.00 2.32
4007 7624 0.693622 TCCTAACCGGGTGCAAATGA 59.306 50.000 0.00 0.00 0.00 2.57
4008 7625 1.094785 CCTAACCGGGTGCAAATGAG 58.905 55.000 0.00 0.00 0.00 2.90
4009 7626 0.451783 CTAACCGGGTGCAAATGAGC 59.548 55.000 0.00 0.00 0.00 4.26
4010 7627 0.963355 TAACCGGGTGCAAATGAGCC 60.963 55.000 0.00 0.00 0.00 4.70
4011 7628 2.361610 CCGGGTGCAAATGAGCCT 60.362 61.111 0.00 0.00 0.00 4.58
4012 7629 2.703798 CCGGGTGCAAATGAGCCTG 61.704 63.158 0.00 0.00 0.00 4.85
4013 7630 2.703798 CGGGTGCAAATGAGCCTGG 61.704 63.158 0.00 0.00 0.00 4.45
4014 7631 2.353610 GGGTGCAAATGAGCCTGGG 61.354 63.158 0.00 0.00 0.00 4.45
4015 7632 2.575461 GTGCAAATGAGCCTGGGC 59.425 61.111 3.00 3.00 42.33 5.36
4016 7633 2.117858 TGCAAATGAGCCTGGGCA 59.882 55.556 14.39 0.00 44.88 5.36
4017 7634 2.277591 TGCAAATGAGCCTGGGCAC 61.278 57.895 14.39 8.23 44.88 5.01
4030 7647 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
4031 7648 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
4032 7649 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
4033 7650 1.447314 CACCGAAACGCCCTACTCC 60.447 63.158 0.00 0.00 0.00 3.85
4034 7651 1.608627 ACCGAAACGCCCTACTCCT 60.609 57.895 0.00 0.00 0.00 3.69
4035 7652 1.190178 ACCGAAACGCCCTACTCCTT 61.190 55.000 0.00 0.00 0.00 3.36
4036 7653 0.739813 CCGAAACGCCCTACTCCTTG 60.740 60.000 0.00 0.00 0.00 3.61
4037 7654 0.245539 CGAAACGCCCTACTCCTTGA 59.754 55.000 0.00 0.00 0.00 3.02
4038 7655 1.134788 CGAAACGCCCTACTCCTTGAT 60.135 52.381 0.00 0.00 0.00 2.57
4039 7656 2.677037 CGAAACGCCCTACTCCTTGATT 60.677 50.000 0.00 0.00 0.00 2.57
4040 7657 3.344515 GAAACGCCCTACTCCTTGATTT 58.655 45.455 0.00 0.00 0.00 2.17
4041 7658 3.434940 AACGCCCTACTCCTTGATTTT 57.565 42.857 0.00 0.00 0.00 1.82
4042 7659 3.434940 ACGCCCTACTCCTTGATTTTT 57.565 42.857 0.00 0.00 0.00 1.94
4043 7660 3.081804 ACGCCCTACTCCTTGATTTTTG 58.918 45.455 0.00 0.00 0.00 2.44
4044 7661 2.423538 CGCCCTACTCCTTGATTTTTGG 59.576 50.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.385115 AGGGTTAGGGTTAGTGATCAGG 58.615 50.000 0.00 0.00 0.00 3.86
1 2 5.163332 GGTTAGGGTTAGGGTTAGTGATCAG 60.163 48.000 0.00 0.00 0.00 2.90
2 3 4.718276 GGTTAGGGTTAGGGTTAGTGATCA 59.282 45.833 0.00 0.00 0.00 2.92
3 4 4.718276 TGGTTAGGGTTAGGGTTAGTGATC 59.282 45.833 0.00 0.00 0.00 2.92
4 5 4.472470 GTGGTTAGGGTTAGGGTTAGTGAT 59.528 45.833 0.00 0.00 0.00 3.06
5 6 3.840078 GTGGTTAGGGTTAGGGTTAGTGA 59.160 47.826 0.00 0.00 0.00 3.41
6 7 3.054875 GGTGGTTAGGGTTAGGGTTAGTG 60.055 52.174 0.00 0.00 0.00 2.74
7 8 3.184628 GGTGGTTAGGGTTAGGGTTAGT 58.815 50.000 0.00 0.00 0.00 2.24
8 9 2.169144 CGGTGGTTAGGGTTAGGGTTAG 59.831 54.545 0.00 0.00 0.00 2.34
9 10 2.187100 CGGTGGTTAGGGTTAGGGTTA 58.813 52.381 0.00 0.00 0.00 2.85
10 11 0.986527 CGGTGGTTAGGGTTAGGGTT 59.013 55.000 0.00 0.00 0.00 4.11
11 12 1.556373 GCGGTGGTTAGGGTTAGGGT 61.556 60.000 0.00 0.00 0.00 4.34
12 13 1.222661 GCGGTGGTTAGGGTTAGGG 59.777 63.158 0.00 0.00 0.00 3.53
13 14 1.222661 GGCGGTGGTTAGGGTTAGG 59.777 63.158 0.00 0.00 0.00 2.69
14 15 1.411612 CTAGGCGGTGGTTAGGGTTAG 59.588 57.143 0.00 0.00 0.00 2.34
15 16 1.488390 CTAGGCGGTGGTTAGGGTTA 58.512 55.000 0.00 0.00 0.00 2.85
16 17 1.907222 GCTAGGCGGTGGTTAGGGTT 61.907 60.000 0.00 0.00 0.00 4.11
17 18 2.364780 GCTAGGCGGTGGTTAGGGT 61.365 63.158 0.00 0.00 0.00 4.34
18 19 2.504519 GCTAGGCGGTGGTTAGGG 59.495 66.667 0.00 0.00 0.00 3.53
62 64 7.370383 ACTAATTTACCATCAAACACTTGCTG 58.630 34.615 0.00 0.00 32.14 4.41
188 190 4.367039 AACATTAGTACAAGTGCAGGGT 57.633 40.909 0.00 0.00 0.00 4.34
225 227 5.578727 GGAGATAGTACAAGAACAGCAACAG 59.421 44.000 0.00 0.00 0.00 3.16
231 233 4.640789 AGCGGAGATAGTACAAGAACAG 57.359 45.455 0.00 0.00 0.00 3.16
236 238 3.965292 TCGAAGCGGAGATAGTACAAG 57.035 47.619 0.00 0.00 0.00 3.16
249 251 8.515473 CAAATTATAAACACTGAAATCGAAGCG 58.485 33.333 0.00 0.00 0.00 4.68
451 817 6.889301 TTTGTTTCAGCTGATTTGAGAGAT 57.111 33.333 19.04 0.00 0.00 2.75
479 845 7.255139 GCCAACAAGTAGAGTATTTGTCTGTTT 60.255 37.037 0.00 0.00 37.59 2.83
480 846 6.204882 GCCAACAAGTAGAGTATTTGTCTGTT 59.795 38.462 0.00 0.00 37.59 3.16
484 850 8.494016 AATAGCCAACAAGTAGAGTATTTGTC 57.506 34.615 0.00 0.00 37.59 3.18
538 904 1.346395 AGATGTAAACGAGGCACCACA 59.654 47.619 0.00 0.00 0.00 4.17
570 936 7.816995 AGAGCGTTTAATTTTGGCAAATTATGA 59.183 29.630 14.29 0.00 42.11 2.15
674 1041 7.230510 AGCTGTTTTCACAAGTTATGGTTATCA 59.769 33.333 0.00 0.00 30.36 2.15
686 1054 8.633075 TTATTCAAAAGAGCTGTTTTCACAAG 57.367 30.769 17.97 7.66 30.36 3.16
896 1268 6.270695 TCTGAGATCCATGGCTGTATCAATTA 59.729 38.462 6.96 0.00 0.00 1.40
924 1296 7.200434 ACATTATATCCTGACAAGTTCCACT 57.800 36.000 0.00 0.00 0.00 4.00
925 1297 7.770897 AGAACATTATATCCTGACAAGTTCCAC 59.229 37.037 0.00 0.00 34.87 4.02
926 1298 7.861629 AGAACATTATATCCTGACAAGTTCCA 58.138 34.615 0.00 0.00 34.87 3.53
927 1299 8.616076 CAAGAACATTATATCCTGACAAGTTCC 58.384 37.037 0.00 0.00 34.87 3.62
928 1300 8.616076 CCAAGAACATTATATCCTGACAAGTTC 58.384 37.037 0.00 0.00 34.61 3.01
929 1301 8.109634 ACCAAGAACATTATATCCTGACAAGTT 58.890 33.333 0.00 0.00 0.00 2.66
930 1302 7.633789 ACCAAGAACATTATATCCTGACAAGT 58.366 34.615 0.00 0.00 0.00 3.16
933 1305 7.336679 CACAACCAAGAACATTATATCCTGACA 59.663 37.037 0.00 0.00 0.00 3.58
935 1307 6.318648 GCACAACCAAGAACATTATATCCTGA 59.681 38.462 0.00 0.00 0.00 3.86
936 1308 6.319658 AGCACAACCAAGAACATTATATCCTG 59.680 38.462 0.00 0.00 0.00 3.86
939 1311 7.761409 TGAAGCACAACCAAGAACATTATATC 58.239 34.615 0.00 0.00 0.00 1.63
962 4298 3.831323 TCCTCATTTCAAAGTTGGCTGA 58.169 40.909 0.00 0.00 0.00 4.26
964 4300 4.021719 CACATCCTCATTTCAAAGTTGGCT 60.022 41.667 0.00 0.00 0.00 4.75
1128 4465 4.937620 GGTGCAATTGATTCTGTCAGACTA 59.062 41.667 10.34 0.00 38.29 2.59
1211 4548 0.955428 ATCGACAGCGCCAATGTGTT 60.955 50.000 2.29 0.00 37.46 3.32
1243 4580 6.838612 AGGGCCTCATAAATAAAGCAACAATA 59.161 34.615 0.00 0.00 0.00 1.90
1300 4637 4.240888 TGATCTTTCTCTCGCTTGAACAG 58.759 43.478 0.00 0.00 0.00 3.16
1421 4761 4.967442 TGACATCATCTCCTTGATCTTCCT 59.033 41.667 0.00 0.00 34.09 3.36
1422 4762 5.287674 TGACATCATCTCCTTGATCTTCC 57.712 43.478 0.00 0.00 34.09 3.46
1423 4763 5.179742 GCATGACATCATCTCCTTGATCTTC 59.820 44.000 0.00 0.00 34.09 2.87
1424 4764 5.064558 GCATGACATCATCTCCTTGATCTT 58.935 41.667 0.00 0.00 34.09 2.40
1425 4765 4.102681 TGCATGACATCATCTCCTTGATCT 59.897 41.667 0.00 0.00 34.09 2.75
1426 4766 4.386711 TGCATGACATCATCTCCTTGATC 58.613 43.478 0.00 0.00 34.09 2.92
1427 4767 4.432980 TGCATGACATCATCTCCTTGAT 57.567 40.909 0.00 0.00 36.79 2.57
1428 4768 3.918294 TGCATGACATCATCTCCTTGA 57.082 42.857 0.00 0.00 33.61 3.02
1429 4769 4.196971 TCTTGCATGACATCATCTCCTTG 58.803 43.478 0.00 0.00 33.61 3.61
1430 4770 4.452825 CTCTTGCATGACATCATCTCCTT 58.547 43.478 0.00 0.00 33.61 3.36
1431 4771 3.181453 CCTCTTGCATGACATCATCTCCT 60.181 47.826 0.00 0.00 33.61 3.69
1432 4772 3.139850 CCTCTTGCATGACATCATCTCC 58.860 50.000 0.00 0.00 33.61 3.71
1433 4773 4.069300 TCCTCTTGCATGACATCATCTC 57.931 45.455 0.00 0.00 33.61 2.75
1434 4774 4.163649 TCTTCCTCTTGCATGACATCATCT 59.836 41.667 0.00 0.00 33.61 2.90
1435 4775 4.449131 TCTTCCTCTTGCATGACATCATC 58.551 43.478 0.00 0.00 33.61 2.92
1436 4776 4.498894 TCTTCCTCTTGCATGACATCAT 57.501 40.909 0.00 0.00 36.96 2.45
1437 4777 3.986996 TCTTCCTCTTGCATGACATCA 57.013 42.857 0.00 0.00 0.00 3.07
1438 4778 4.449131 TGATCTTCCTCTTGCATGACATC 58.551 43.478 0.00 0.00 0.00 3.06
1439 4779 4.498894 TGATCTTCCTCTTGCATGACAT 57.501 40.909 0.00 0.00 0.00 3.06
1440 4780 3.986996 TGATCTTCCTCTTGCATGACA 57.013 42.857 0.00 0.00 0.00 3.58
1441 4781 3.626670 CCTTGATCTTCCTCTTGCATGAC 59.373 47.826 0.00 0.00 0.00 3.06
1442 4782 3.520721 TCCTTGATCTTCCTCTTGCATGA 59.479 43.478 0.00 1.92 0.00 3.07
1443 4783 3.878103 CTCCTTGATCTTCCTCTTGCATG 59.122 47.826 0.00 0.00 0.00 4.06
1444 4784 3.779183 TCTCCTTGATCTTCCTCTTGCAT 59.221 43.478 0.00 0.00 0.00 3.96
1445 4785 3.176411 TCTCCTTGATCTTCCTCTTGCA 58.824 45.455 0.00 0.00 0.00 4.08
1446 4786 3.902881 TCTCCTTGATCTTCCTCTTGC 57.097 47.619 0.00 0.00 0.00 4.01
1447 4787 5.611128 TCATCTCCTTGATCTTCCTCTTG 57.389 43.478 0.00 0.00 32.05 3.02
1448 4788 5.666718 ACATCATCTCCTTGATCTTCCTCTT 59.333 40.000 0.00 0.00 34.09 2.85
1449 4789 5.218179 ACATCATCTCCTTGATCTTCCTCT 58.782 41.667 0.00 0.00 34.09 3.69
1450 4790 5.070180 TGACATCATCTCCTTGATCTTCCTC 59.930 44.000 0.00 0.00 34.09 3.71
1451 4791 4.967442 TGACATCATCTCCTTGATCTTCCT 59.033 41.667 0.00 0.00 34.09 3.36
1452 4792 5.287674 TGACATCATCTCCTTGATCTTCC 57.712 43.478 0.00 0.00 34.09 3.46
1453 4793 5.179742 GCATGACATCATCTCCTTGATCTTC 59.820 44.000 0.00 0.00 34.09 2.87
1454 4794 5.064558 GCATGACATCATCTCCTTGATCTT 58.935 41.667 0.00 0.00 34.09 2.40
1455 4795 4.102681 TGCATGACATCATCTCCTTGATCT 59.897 41.667 0.00 0.00 34.09 2.75
1456 4796 4.386711 TGCATGACATCATCTCCTTGATC 58.613 43.478 0.00 0.00 34.09 2.92
1457 4797 4.432980 TGCATGACATCATCTCCTTGAT 57.567 40.909 0.00 0.00 36.79 2.57
1458 4798 3.918294 TGCATGACATCATCTCCTTGA 57.082 42.857 0.00 0.00 33.61 3.02
1459 4799 4.196971 TCTTGCATGACATCATCTCCTTG 58.803 43.478 0.00 0.00 33.61 3.61
1460 4800 4.452825 CTCTTGCATGACATCATCTCCTT 58.547 43.478 0.00 0.00 33.61 3.36
1461 4801 3.181453 CCTCTTGCATGACATCATCTCCT 60.181 47.826 0.00 0.00 33.61 3.69
1462 4802 3.139850 CCTCTTGCATGACATCATCTCC 58.860 50.000 0.00 0.00 33.61 3.71
1463 4803 4.069300 TCCTCTTGCATGACATCATCTC 57.931 45.455 0.00 0.00 33.61 2.75
1464 4804 4.163649 TCTTCCTCTTGCATGACATCATCT 59.836 41.667 0.00 0.00 33.61 2.90
1465 4805 4.449131 TCTTCCTCTTGCATGACATCATC 58.551 43.478 0.00 0.00 33.61 2.92
1466 4806 4.498894 TCTTCCTCTTGCATGACATCAT 57.501 40.909 0.00 0.00 36.96 2.45
1467 4807 3.986996 TCTTCCTCTTGCATGACATCA 57.013 42.857 0.00 0.00 0.00 3.07
1468 4808 4.449131 TGATCTTCCTCTTGCATGACATC 58.551 43.478 0.00 0.00 0.00 3.06
1469 4809 4.498894 TGATCTTCCTCTTGCATGACAT 57.501 40.909 0.00 0.00 0.00 3.06
1470 4810 3.986996 TGATCTTCCTCTTGCATGACA 57.013 42.857 0.00 0.00 0.00 3.58
1471 4811 4.511527 TCTTGATCTTCCTCTTGCATGAC 58.488 43.478 0.00 0.00 0.00 3.06
1472 4812 4.831674 TCTTGATCTTCCTCTTGCATGA 57.168 40.909 0.00 1.92 0.00 3.07
1473 4813 4.335874 CCTTCTTGATCTTCCTCTTGCATG 59.664 45.833 0.00 0.00 0.00 4.06
1474 4814 4.226846 TCCTTCTTGATCTTCCTCTTGCAT 59.773 41.667 0.00 0.00 0.00 3.96
1475 4815 3.584406 TCCTTCTTGATCTTCCTCTTGCA 59.416 43.478 0.00 0.00 0.00 4.08
1524 4864 2.414824 GCCTAGAAGAGTCACACAGTCG 60.415 54.545 0.00 0.00 0.00 4.18
1537 4877 4.100808 AGTTCTAGCAATGAGGCCTAGAAG 59.899 45.833 4.42 0.00 35.84 2.85
1599 4939 4.534500 TCTGGCTCTTTAATGTTACCCTCA 59.466 41.667 0.00 0.00 0.00 3.86
1741 5093 3.306472 TGCAGTGGTTCCTTTTACCTT 57.694 42.857 0.00 0.00 36.60 3.50
1800 5152 5.231991 CGTTATAATTCCATTTGCACTTGCC 59.768 40.000 0.00 0.00 41.18 4.52
1967 5532 5.291858 GCATCAATAACACGATCAAGAGACA 59.708 40.000 0.00 0.00 0.00 3.41
2043 5608 3.012518 ACACAATGCTTCATAGGCAGAC 58.987 45.455 0.00 0.00 43.15 3.51
2343 5916 0.870393 ACATTGCTTCACTCTGTGCG 59.130 50.000 0.00 0.00 32.98 5.34
2405 5978 6.068670 AGTATAGGCATATGTTTCCCAAACC 58.931 40.000 4.29 0.00 40.67 3.27
2514 6115 6.757947 GCATAATTTTATCACAGTGTGGCAAT 59.242 34.615 22.79 11.75 33.87 3.56
2868 6484 9.535878 AATAAAATACGACAAGGCAAAGAAAAA 57.464 25.926 0.00 0.00 0.00 1.94
2892 6508 6.715264 GGAAAAGGAACGGTCATCCATATAAT 59.285 38.462 1.31 0.00 39.55 1.28
2940 6556 6.431543 TGCAAGGCAATGAAAATGATGAAATT 59.568 30.769 0.00 0.00 34.76 1.82
2941 6557 5.941058 TGCAAGGCAATGAAAATGATGAAAT 59.059 32.000 0.00 0.00 34.76 2.17
3155 6772 1.688735 TGGAGCAGAGTTCCGGATATG 59.311 52.381 4.15 0.00 37.54 1.78
3314 6931 7.958053 TTAGTAAGAAAGGGAAAAGAAGACG 57.042 36.000 0.00 0.00 0.00 4.18
3429 7046 3.071459 GCTGAACGCACGTCATCGG 62.071 63.158 0.00 0.00 41.85 4.18
3548 7165 3.375500 AACGCACGCACACACACAC 62.375 57.895 0.00 0.00 0.00 3.82
3549 7166 3.089729 GAACGCACGCACACACACA 62.090 57.895 0.00 0.00 0.00 3.72
3638 7255 0.911769 TCGGGTGCAGAGATGGATTT 59.088 50.000 0.00 0.00 0.00 2.17
3639 7256 0.467384 CTCGGGTGCAGAGATGGATT 59.533 55.000 0.00 0.00 37.93 3.01
3640 7257 2.037620 GCTCGGGTGCAGAGATGGAT 62.038 60.000 5.67 0.00 37.93 3.41
3641 7258 2.725312 GCTCGGGTGCAGAGATGGA 61.725 63.158 5.67 0.00 37.93 3.41
3642 7259 2.202987 GCTCGGGTGCAGAGATGG 60.203 66.667 5.67 0.00 37.93 3.51
3643 7260 1.227205 GAGCTCGGGTGCAGAGATG 60.227 63.158 0.00 0.00 37.93 2.90
3644 7261 1.047596 ATGAGCTCGGGTGCAGAGAT 61.048 55.000 9.64 0.00 37.93 2.75
3645 7262 1.670949 GATGAGCTCGGGTGCAGAGA 61.671 60.000 9.64 0.00 37.93 3.10
3646 7263 1.227205 GATGAGCTCGGGTGCAGAG 60.227 63.158 9.64 0.00 38.68 3.35
3647 7264 1.683707 AGATGAGCTCGGGTGCAGA 60.684 57.895 9.64 0.00 34.99 4.26
3648 7265 1.521010 CAGATGAGCTCGGGTGCAG 60.521 63.158 9.64 0.00 34.99 4.41
3649 7266 2.580815 CAGATGAGCTCGGGTGCA 59.419 61.111 9.64 0.00 34.99 4.57
3650 7267 2.894387 GCAGATGAGCTCGGGTGC 60.894 66.667 15.62 15.62 0.00 5.01
3651 7268 1.812922 GTGCAGATGAGCTCGGGTG 60.813 63.158 9.64 6.93 34.99 4.61
3652 7269 1.954362 GAGTGCAGATGAGCTCGGGT 61.954 60.000 9.64 0.00 33.52 5.28
3653 7270 1.227205 GAGTGCAGATGAGCTCGGG 60.227 63.158 9.64 0.00 33.52 5.14
3654 7271 1.588403 CGAGTGCAGATGAGCTCGG 60.588 63.158 9.64 0.00 44.68 4.63
3655 7272 3.994587 CGAGTGCAGATGAGCTCG 58.005 61.111 9.64 7.62 43.42 5.03
3656 7273 3.255017 CTCGAGTGCAGATGAGCTC 57.745 57.895 6.82 6.82 34.99 4.09
3658 7275 3.703547 GCTCGAGTGCAGATGAGC 58.296 61.111 15.13 15.62 45.95 4.26
3659 7276 0.455005 TCAGCTCGAGTGCAGATGAG 59.545 55.000 15.13 4.97 31.35 2.90
3660 7277 0.172127 GTCAGCTCGAGTGCAGATGA 59.828 55.000 15.13 0.00 33.91 2.92
3661 7278 1.138636 CGTCAGCTCGAGTGCAGATG 61.139 60.000 15.13 5.62 31.49 2.90
3662 7279 1.138459 CGTCAGCTCGAGTGCAGAT 59.862 57.895 15.13 0.00 31.49 2.90
3663 7280 1.515521 TTCGTCAGCTCGAGTGCAGA 61.516 55.000 15.13 10.21 40.86 4.26
3664 7281 0.664466 TTTCGTCAGCTCGAGTGCAG 60.664 55.000 15.13 8.31 40.86 4.41
3665 7282 0.249280 TTTTCGTCAGCTCGAGTGCA 60.249 50.000 15.13 0.00 40.86 4.57
3666 7283 0.859232 TTTTTCGTCAGCTCGAGTGC 59.141 50.000 15.13 0.56 40.86 4.40
3725 7342 7.522374 GCAACAAATTTTCTACCACACAAAAA 58.478 30.769 0.00 0.00 0.00 1.94
3726 7343 6.183360 CGCAACAAATTTTCTACCACACAAAA 60.183 34.615 0.00 0.00 0.00 2.44
3727 7344 5.289675 CGCAACAAATTTTCTACCACACAAA 59.710 36.000 0.00 0.00 0.00 2.83
3728 7345 4.800993 CGCAACAAATTTTCTACCACACAA 59.199 37.500 0.00 0.00 0.00 3.33
3729 7346 4.142359 ACGCAACAAATTTTCTACCACACA 60.142 37.500 0.00 0.00 0.00 3.72
3730 7347 4.206200 CACGCAACAAATTTTCTACCACAC 59.794 41.667 0.00 0.00 0.00 3.82
3731 7348 4.096532 TCACGCAACAAATTTTCTACCACA 59.903 37.500 0.00 0.00 0.00 4.17
3732 7349 4.602995 TCACGCAACAAATTTTCTACCAC 58.397 39.130 0.00 0.00 0.00 4.16
3733 7350 4.576873 TCTCACGCAACAAATTTTCTACCA 59.423 37.500 0.00 0.00 0.00 3.25
3734 7351 4.909880 GTCTCACGCAACAAATTTTCTACC 59.090 41.667 0.00 0.00 0.00 3.18
3735 7352 4.909880 GGTCTCACGCAACAAATTTTCTAC 59.090 41.667 0.00 0.00 0.00 2.59
3736 7353 4.023536 GGGTCTCACGCAACAAATTTTCTA 60.024 41.667 0.00 0.00 0.00 2.10
3737 7354 3.243401 GGGTCTCACGCAACAAATTTTCT 60.243 43.478 0.00 0.00 0.00 2.52
3738 7355 3.049912 GGGTCTCACGCAACAAATTTTC 58.950 45.455 0.00 0.00 0.00 2.29
3739 7356 2.542824 CGGGTCTCACGCAACAAATTTT 60.543 45.455 0.00 0.00 0.00 1.82
3740 7357 1.001815 CGGGTCTCACGCAACAAATTT 60.002 47.619 0.00 0.00 0.00 1.82
3741 7358 0.591170 CGGGTCTCACGCAACAAATT 59.409 50.000 0.00 0.00 0.00 1.82
3742 7359 2.244000 CGGGTCTCACGCAACAAAT 58.756 52.632 0.00 0.00 0.00 2.32
3743 7360 3.725819 CGGGTCTCACGCAACAAA 58.274 55.556 0.00 0.00 0.00 2.83
3750 7367 0.673644 AATTTGGAGCGGGTCTCACG 60.674 55.000 7.19 0.00 43.70 4.35
3751 7368 1.468914 GAAATTTGGAGCGGGTCTCAC 59.531 52.381 7.19 0.00 43.70 3.51
3752 7369 1.073125 TGAAATTTGGAGCGGGTCTCA 59.927 47.619 7.19 0.97 43.70 3.27
3753 7370 1.821216 TGAAATTTGGAGCGGGTCTC 58.179 50.000 7.19 0.00 41.15 3.36
3754 7371 2.162681 CTTGAAATTTGGAGCGGGTCT 58.837 47.619 7.19 0.00 0.00 3.85
3755 7372 1.886542 ACTTGAAATTTGGAGCGGGTC 59.113 47.619 0.00 0.00 0.00 4.46
3756 7373 1.886542 GACTTGAAATTTGGAGCGGGT 59.113 47.619 0.00 0.00 0.00 5.28
3757 7374 1.885887 TGACTTGAAATTTGGAGCGGG 59.114 47.619 0.00 0.00 0.00 6.13
3758 7375 3.855689 ATGACTTGAAATTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
3759 7376 5.505165 CAAATGACTTGAAATTTGGAGCG 57.495 39.130 0.00 0.00 39.19 5.03
3767 7384 9.358406 TGCTCATATATCCAAATGACTTGAAAT 57.642 29.630 0.00 0.00 37.17 2.17
3768 7385 8.750515 TGCTCATATATCCAAATGACTTGAAA 57.249 30.769 0.00 0.00 37.17 2.69
3769 7386 7.040892 GCTGCTCATATATCCAAATGACTTGAA 60.041 37.037 0.00 0.00 37.17 2.69
3770 7387 6.429078 GCTGCTCATATATCCAAATGACTTGA 59.571 38.462 0.00 0.00 37.17 3.02
3771 7388 6.430308 AGCTGCTCATATATCCAAATGACTTG 59.570 38.462 0.00 0.00 34.52 3.16
3772 7389 6.540995 AGCTGCTCATATATCCAAATGACTT 58.459 36.000 0.00 0.00 0.00 3.01
3773 7390 6.013553 AGAGCTGCTCATATATCCAAATGACT 60.014 38.462 29.49 1.49 32.06 3.41
3774 7391 6.171921 AGAGCTGCTCATATATCCAAATGAC 58.828 40.000 29.49 0.00 32.06 3.06
3775 7392 6.370186 AGAGCTGCTCATATATCCAAATGA 57.630 37.500 29.49 0.00 32.06 2.57
3776 7393 5.291371 CGAGAGCTGCTCATATATCCAAATG 59.709 44.000 29.49 3.43 44.15 2.32
3777 7394 5.417811 CGAGAGCTGCTCATATATCCAAAT 58.582 41.667 29.49 5.90 44.15 2.32
3778 7395 4.322273 CCGAGAGCTGCTCATATATCCAAA 60.322 45.833 29.49 0.00 44.15 3.28
3779 7396 3.194329 CCGAGAGCTGCTCATATATCCAA 59.806 47.826 29.49 0.00 44.15 3.53
3780 7397 2.757314 CCGAGAGCTGCTCATATATCCA 59.243 50.000 29.49 0.00 44.15 3.41
3781 7398 2.481104 GCCGAGAGCTGCTCATATATCC 60.481 54.545 29.49 8.75 44.15 2.59
3782 7399 2.165234 TGCCGAGAGCTGCTCATATATC 59.835 50.000 29.49 17.18 44.15 1.63
3783 7400 2.174360 TGCCGAGAGCTGCTCATATAT 58.826 47.619 29.49 10.20 44.15 0.86
3784 7401 1.620822 TGCCGAGAGCTGCTCATATA 58.379 50.000 29.49 10.41 44.15 0.86
3785 7402 0.755079 TTGCCGAGAGCTGCTCATAT 59.245 50.000 29.49 10.97 44.15 1.78
3786 7403 0.536724 TTTGCCGAGAGCTGCTCATA 59.463 50.000 29.49 9.40 44.15 2.15
3787 7404 0.321919 TTTTGCCGAGAGCTGCTCAT 60.322 50.000 29.49 15.61 44.15 2.90
3788 7405 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
3789 7406 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
3790 7407 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
3804 7421 5.186256 ACAAACCCCCAATTTGTCTTTTT 57.814 34.783 0.00 0.00 44.97 1.94
3805 7422 4.853468 ACAAACCCCCAATTTGTCTTTT 57.147 36.364 0.00 0.00 44.97 2.27
3806 7423 5.959583 TTACAAACCCCCAATTTGTCTTT 57.040 34.783 6.39 0.00 44.97 2.52
3807 7424 5.959583 TTTACAAACCCCCAATTTGTCTT 57.040 34.783 6.39 0.00 44.97 3.01
3808 7425 5.959583 TTTTACAAACCCCCAATTTGTCT 57.040 34.783 6.39 0.00 44.97 3.41
3809 7426 6.544197 ACATTTTTACAAACCCCCAATTTGTC 59.456 34.615 6.39 0.00 44.97 3.18
3811 7428 6.951062 ACATTTTTACAAACCCCCAATTTG 57.049 33.333 0.00 0.00 41.81 2.32
3812 7429 7.962995 AAACATTTTTACAAACCCCCAATTT 57.037 28.000 0.00 0.00 0.00 1.82
3813 7430 8.275758 AGTAAACATTTTTACAAACCCCCAATT 58.724 29.630 15.08 0.00 46.66 2.32
3814 7431 7.717436 CAGTAAACATTTTTACAAACCCCCAAT 59.283 33.333 15.08 0.00 46.66 3.16
3815 7432 7.048512 CAGTAAACATTTTTACAAACCCCCAA 58.951 34.615 15.08 0.00 46.66 4.12
3816 7433 6.156429 ACAGTAAACATTTTTACAAACCCCCA 59.844 34.615 15.08 0.00 46.66 4.96
3817 7434 6.584488 ACAGTAAACATTTTTACAAACCCCC 58.416 36.000 15.08 0.00 46.66 5.40
3818 7435 7.764901 TGAACAGTAAACATTTTTACAAACCCC 59.235 33.333 15.08 2.54 46.66 4.95
3819 7436 8.705048 TGAACAGTAAACATTTTTACAAACCC 57.295 30.769 15.08 3.36 46.66 4.11
3831 7448 9.730420 GTCAAAAAGTACATGAACAGTAAACAT 57.270 29.630 0.00 0.00 0.00 2.71
3832 7449 8.185505 GGTCAAAAAGTACATGAACAGTAAACA 58.814 33.333 0.00 0.00 31.11 2.83
3833 7450 7.646526 GGGTCAAAAAGTACATGAACAGTAAAC 59.353 37.037 0.00 0.00 32.38 2.01
3834 7451 7.467539 CGGGTCAAAAAGTACATGAACAGTAAA 60.468 37.037 0.00 0.00 32.38 2.01
3835 7452 6.017770 CGGGTCAAAAAGTACATGAACAGTAA 60.018 38.462 0.00 0.00 32.38 2.24
3836 7453 5.467399 CGGGTCAAAAAGTACATGAACAGTA 59.533 40.000 0.00 0.00 32.38 2.74
3837 7454 4.274950 CGGGTCAAAAAGTACATGAACAGT 59.725 41.667 0.00 0.00 32.38 3.55
3838 7455 4.513692 TCGGGTCAAAAAGTACATGAACAG 59.486 41.667 0.00 0.00 32.38 3.16
3839 7456 4.452825 TCGGGTCAAAAAGTACATGAACA 58.547 39.130 0.00 0.00 32.38 3.18
3840 7457 5.622770 ATCGGGTCAAAAAGTACATGAAC 57.377 39.130 0.00 0.00 0.00 3.18
3841 7458 6.039941 ACAAATCGGGTCAAAAAGTACATGAA 59.960 34.615 0.00 0.00 0.00 2.57
3842 7459 5.533154 ACAAATCGGGTCAAAAAGTACATGA 59.467 36.000 0.00 0.00 0.00 3.07
3843 7460 5.768317 ACAAATCGGGTCAAAAAGTACATG 58.232 37.500 0.00 0.00 0.00 3.21
3844 7461 5.768164 AGACAAATCGGGTCAAAAAGTACAT 59.232 36.000 0.00 0.00 37.74 2.29
3845 7462 5.127491 AGACAAATCGGGTCAAAAAGTACA 58.873 37.500 0.00 0.00 37.74 2.90
3846 7463 5.684550 AGACAAATCGGGTCAAAAAGTAC 57.315 39.130 0.00 0.00 37.74 2.73
3847 7464 6.702716 AAAGACAAATCGGGTCAAAAAGTA 57.297 33.333 0.00 0.00 37.74 2.24
3848 7465 5.592104 AAAGACAAATCGGGTCAAAAAGT 57.408 34.783 0.00 0.00 37.74 2.66
3849 7466 6.902224 AAAAAGACAAATCGGGTCAAAAAG 57.098 33.333 0.00 0.00 37.74 2.27
3877 7494 3.325293 TTGGACATCTGAGCAACTCTC 57.675 47.619 0.00 0.00 42.23 3.20
3878 7495 3.777106 TTTGGACATCTGAGCAACTCT 57.223 42.857 0.00 0.00 0.00 3.24
3879 7496 3.128242 CCATTTGGACATCTGAGCAACTC 59.872 47.826 0.00 0.00 37.39 3.01
3880 7497 3.087031 CCATTTGGACATCTGAGCAACT 58.913 45.455 0.00 0.00 37.39 3.16
3881 7498 2.416431 GCCATTTGGACATCTGAGCAAC 60.416 50.000 0.00 0.00 37.39 4.17
3882 7499 1.820519 GCCATTTGGACATCTGAGCAA 59.179 47.619 0.00 0.00 37.39 3.91
3883 7500 1.005097 AGCCATTTGGACATCTGAGCA 59.995 47.619 0.00 0.00 37.39 4.26
3884 7501 1.760192 AGCCATTTGGACATCTGAGC 58.240 50.000 0.00 0.00 37.39 4.26
3885 7502 3.777465 CAAGCCATTTGGACATCTGAG 57.223 47.619 0.00 0.00 37.39 3.35
3895 7512 3.004862 GCTCCAAATTCCAAGCCATTTG 58.995 45.455 0.00 0.00 39.25 2.32
3896 7513 2.354003 CGCTCCAAATTCCAAGCCATTT 60.354 45.455 0.00 0.00 0.00 2.32
3897 7514 1.205417 CGCTCCAAATTCCAAGCCATT 59.795 47.619 0.00 0.00 0.00 3.16
3898 7515 0.819582 CGCTCCAAATTCCAAGCCAT 59.180 50.000 0.00 0.00 0.00 4.40
3899 7516 1.250154 CCGCTCCAAATTCCAAGCCA 61.250 55.000 0.00 0.00 0.00 4.75
3900 7517 1.512694 CCGCTCCAAATTCCAAGCC 59.487 57.895 0.00 0.00 0.00 4.35
3901 7518 1.250840 ACCCGCTCCAAATTCCAAGC 61.251 55.000 0.00 0.00 0.00 4.01
3902 7519 0.811281 GACCCGCTCCAAATTCCAAG 59.189 55.000 0.00 0.00 0.00 3.61
3903 7520 0.404040 AGACCCGCTCCAAATTCCAA 59.596 50.000 0.00 0.00 0.00 3.53
3904 7521 0.035439 GAGACCCGCTCCAAATTCCA 60.035 55.000 0.00 0.00 37.69 3.53
3905 7522 0.035439 TGAGACCCGCTCCAAATTCC 60.035 55.000 0.00 0.00 43.26 3.01
3906 7523 1.087501 GTGAGACCCGCTCCAAATTC 58.912 55.000 0.00 0.00 43.26 2.17
3907 7524 0.673644 CGTGAGACCCGCTCCAAATT 60.674 55.000 0.00 0.00 43.26 1.82
3908 7525 1.079127 CGTGAGACCCGCTCCAAAT 60.079 57.895 0.00 0.00 43.26 2.32
3909 7526 2.342279 CGTGAGACCCGCTCCAAA 59.658 61.111 0.00 0.00 43.26 3.28
3916 7533 1.086696 AATTTGATGCGTGAGACCCG 58.913 50.000 0.00 0.00 0.00 5.28
3917 7534 3.191371 AGAAAATTTGATGCGTGAGACCC 59.809 43.478 0.00 0.00 0.00 4.46
3918 7535 4.425577 AGAAAATTTGATGCGTGAGACC 57.574 40.909 0.00 0.00 0.00 3.85
3919 7536 5.106712 TGGTAGAAAATTTGATGCGTGAGAC 60.107 40.000 0.00 0.00 0.00 3.36
3920 7537 5.000591 TGGTAGAAAATTTGATGCGTGAGA 58.999 37.500 0.00 0.00 0.00 3.27
3921 7538 5.088739 GTGGTAGAAAATTTGATGCGTGAG 58.911 41.667 0.00 0.00 0.00 3.51
3922 7539 4.517075 TGTGGTAGAAAATTTGATGCGTGA 59.483 37.500 0.00 0.00 0.00 4.35
3923 7540 4.616802 GTGTGGTAGAAAATTTGATGCGTG 59.383 41.667 0.00 0.00 0.00 5.34
3924 7541 4.277174 TGTGTGGTAGAAAATTTGATGCGT 59.723 37.500 0.00 0.00 0.00 5.24
3925 7542 4.793071 TGTGTGGTAGAAAATTTGATGCG 58.207 39.130 0.00 0.00 0.00 4.73
3926 7543 7.224557 ACTTTTGTGTGGTAGAAAATTTGATGC 59.775 33.333 0.00 0.00 31.96 3.91
3927 7544 8.647143 ACTTTTGTGTGGTAGAAAATTTGATG 57.353 30.769 0.00 0.00 31.96 3.07
3928 7545 9.665719 AAACTTTTGTGTGGTAGAAAATTTGAT 57.334 25.926 0.00 0.00 31.96 2.57
3929 7546 9.495572 AAAACTTTTGTGTGGTAGAAAATTTGA 57.504 25.926 0.00 0.00 31.96 2.69
3984 7601 2.068834 TTGCACCCGGTTAGGAAAAA 57.931 45.000 0.00 0.00 45.00 1.94
3985 7602 2.068834 TTTGCACCCGGTTAGGAAAA 57.931 45.000 0.00 0.00 45.00 2.29
3986 7603 1.889829 CATTTGCACCCGGTTAGGAAA 59.110 47.619 0.00 3.85 45.00 3.13
3987 7604 1.074084 TCATTTGCACCCGGTTAGGAA 59.926 47.619 0.00 0.00 45.00 3.36
3988 7605 0.693622 TCATTTGCACCCGGTTAGGA 59.306 50.000 0.00 0.00 45.00 2.94
3989 7606 1.094785 CTCATTTGCACCCGGTTAGG 58.905 55.000 0.00 0.00 40.63 2.69
3990 7607 0.451783 GCTCATTTGCACCCGGTTAG 59.548 55.000 0.00 0.00 0.00 2.34
3991 7608 0.963355 GGCTCATTTGCACCCGGTTA 60.963 55.000 0.00 0.00 34.04 2.85
3992 7609 2.275380 GGCTCATTTGCACCCGGTT 61.275 57.895 0.00 0.00 34.04 4.44
3993 7610 2.676471 GGCTCATTTGCACCCGGT 60.676 61.111 0.00 0.00 34.04 5.28
3994 7611 2.361610 AGGCTCATTTGCACCCGG 60.362 61.111 0.00 0.00 34.04 5.73
3995 7612 2.703798 CCAGGCTCATTTGCACCCG 61.704 63.158 0.00 0.00 34.04 5.28
3996 7613 2.353610 CCCAGGCTCATTTGCACCC 61.354 63.158 0.00 0.00 34.04 4.61
3997 7614 3.010413 GCCCAGGCTCATTTGCACC 62.010 63.158 0.08 0.00 38.26 5.01
3998 7615 2.277591 TGCCCAGGCTCATTTGCAC 61.278 57.895 10.58 0.00 42.51 4.57
3999 7616 2.117858 TGCCCAGGCTCATTTGCA 59.882 55.556 10.58 0.00 42.51 4.08
4000 7617 2.575461 GTGCCCAGGCTCATTTGC 59.425 61.111 10.58 0.00 42.51 3.68
4001 7618 2.703798 CGGTGCCCAGGCTCATTTG 61.704 63.158 10.58 0.00 42.51 2.32
4002 7619 2.361610 CGGTGCCCAGGCTCATTT 60.362 61.111 10.58 0.00 42.51 2.32
4003 7620 2.424842 TTTCGGTGCCCAGGCTCATT 62.425 55.000 10.58 0.00 42.51 2.57
4004 7621 2.905996 TTTCGGTGCCCAGGCTCAT 61.906 57.895 10.58 0.00 42.51 2.90
4005 7622 3.565214 TTTCGGTGCCCAGGCTCA 61.565 61.111 10.58 0.00 42.51 4.26
4006 7623 3.056328 GTTTCGGTGCCCAGGCTC 61.056 66.667 10.58 6.18 42.51 4.70
4014 7631 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
4015 7632 1.447314 GGAGTAGGGCGTTTCGGTG 60.447 63.158 0.00 0.00 0.00 4.94
4016 7633 1.190178 AAGGAGTAGGGCGTTTCGGT 61.190 55.000 0.00 0.00 0.00 4.69
4017 7634 0.739813 CAAGGAGTAGGGCGTTTCGG 60.740 60.000 0.00 0.00 0.00 4.30
4018 7635 0.245539 TCAAGGAGTAGGGCGTTTCG 59.754 55.000 0.00 0.00 0.00 3.46
4019 7636 2.693267 ATCAAGGAGTAGGGCGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
4020 7637 3.434940 AAATCAAGGAGTAGGGCGTTT 57.565 42.857 0.00 0.00 0.00 3.60
4021 7638 3.434940 AAAATCAAGGAGTAGGGCGTT 57.565 42.857 0.00 0.00 0.00 4.84
4022 7639 3.081804 CAAAAATCAAGGAGTAGGGCGT 58.918 45.455 0.00 0.00 0.00 5.68
4023 7640 2.423538 CCAAAAATCAAGGAGTAGGGCG 59.576 50.000 0.00 0.00 0.00 6.13
4024 7641 3.431415 ACCAAAAATCAAGGAGTAGGGC 58.569 45.455 0.00 0.00 0.00 5.19
4025 7642 6.007703 TGTAACCAAAAATCAAGGAGTAGGG 58.992 40.000 0.00 0.00 0.00 3.53
4026 7643 7.519032 TTGTAACCAAAAATCAAGGAGTAGG 57.481 36.000 0.00 0.00 0.00 3.18
4027 7644 8.846211 TCTTTGTAACCAAAAATCAAGGAGTAG 58.154 33.333 0.00 0.00 39.95 2.57
4028 7645 8.754991 TCTTTGTAACCAAAAATCAAGGAGTA 57.245 30.769 0.00 0.00 39.95 2.59
4029 7646 7.654022 TCTTTGTAACCAAAAATCAAGGAGT 57.346 32.000 0.00 0.00 39.95 3.85
4030 7647 8.940768 TTTCTTTGTAACCAAAAATCAAGGAG 57.059 30.769 0.00 0.00 39.95 3.69
4031 7648 9.726438 TTTTTCTTTGTAACCAAAAATCAAGGA 57.274 25.926 0.00 0.00 39.95 3.36
4032 7649 9.986833 CTTTTTCTTTGTAACCAAAAATCAAGG 57.013 29.630 0.00 0.00 39.95 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.