Multiple sequence alignment - TraesCS3D01G318000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G318000 chr3D 100.000 2812 0 0 1 2812 432021578 432018767 0.000000e+00 5193.0
1 TraesCS3D01G318000 chr3D 93.333 120 8 0 2227 2346 415715683 415715802 8.000000e-41 178.0
2 TraesCS3D01G318000 chr3B 93.675 1929 92 13 18 1922 564203819 564201897 0.000000e+00 2859.0
3 TraesCS3D01G318000 chr3B 100.000 28 0 0 2341 2368 20296102 20296075 5.000000e-03 52.8
4 TraesCS3D01G318000 chr3A 92.602 1987 103 24 42 2009 569389609 569387648 0.000000e+00 2815.0
5 TraesCS3D01G318000 chr3A 96.970 33 1 0 2338 2370 724326291 724326323 3.910000e-04 56.5
6 TraesCS3D01G318000 chr5D 93.023 129 9 0 2218 2346 525175650 525175778 3.700000e-44 189.0
7 TraesCS3D01G318000 chr5D 92.063 126 10 0 2221 2346 491718643 491718518 8.000000e-41 178.0
8 TraesCS3D01G318000 chr2B 92.857 126 9 0 2221 2346 629695169 629695044 1.720000e-42 183.0
9 TraesCS3D01G318000 chr2B 81.169 154 14 8 2221 2371 24280698 24280839 2.960000e-20 110.0
10 TraesCS3D01G318000 chr2B 100.000 31 0 0 2341 2371 117602108 117602078 1.090000e-04 58.4
11 TraesCS3D01G318000 chr5A 92.800 125 9 0 2221 2345 528267999 528268123 6.190000e-42 182.0
12 TraesCS3D01G318000 chr5A 88.811 143 15 1 2221 2362 640605310 640605452 1.040000e-39 174.0
13 TraesCS3D01G318000 chr1D 92.063 126 10 0 2221 2346 454151865 454151740 8.000000e-41 178.0
14 TraesCS3D01G318000 chr1D 100.000 31 0 0 2341 2371 115091983 115091953 1.090000e-04 58.4
15 TraesCS3D01G318000 chr4B 91.270 126 11 0 2221 2346 621068170 621068295 3.720000e-39 172.0
16 TraesCS3D01G318000 chr4B 97.143 35 0 1 2335 2369 37701824 37701791 1.090000e-04 58.4
17 TraesCS3D01G318000 chr6B 89.051 137 13 2 2212 2346 412154922 412155058 4.820000e-38 169.0
18 TraesCS3D01G318000 chr2D 100.000 31 0 0 2341 2371 646451286 646451316 1.090000e-04 58.4
19 TraesCS3D01G318000 chr1B 100.000 31 0 0 2341 2371 654236965 654236995 1.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G318000 chr3D 432018767 432021578 2811 True 5193 5193 100.000 1 2812 1 chr3D.!!$R1 2811
1 TraesCS3D01G318000 chr3B 564201897 564203819 1922 True 2859 2859 93.675 18 1922 1 chr3B.!!$R2 1904
2 TraesCS3D01G318000 chr3A 569387648 569389609 1961 True 2815 2815 92.602 42 2009 1 chr3A.!!$R1 1967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.103755 GCTCAGCTCCATCGTGATCA 59.896 55.000 0.00 0.0 0.00 2.92 F
111 112 1.227263 GATCGTGTATGGGCGCAGT 60.227 57.895 10.83 0.0 0.00 4.40 F
400 413 2.113433 CCATCTCCGTCGTCCTCGT 61.113 63.158 0.00 0.0 38.33 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1080 0.108804 ACAACGTGGACCAGCGATAG 60.109 55.0 19.06 11.89 0.0 2.08 R
1058 1081 0.389296 CACAACGTGGACCAGCGATA 60.389 55.0 19.06 0.00 0.0 2.92 R
2289 2326 0.038599 TCGTAGGGGTAGAGTGTGCA 59.961 55.0 0.00 0.00 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.918983 ATCAGAAAATCGGGCAGGGA 59.081 50.000 0.00 0.00 0.00 4.20
29 30 1.134098 TCAGAAAATCGGGCAGGGATC 60.134 52.381 0.00 0.00 0.00 3.36
30 31 0.183731 AGAAAATCGGGCAGGGATCC 59.816 55.000 1.92 1.92 0.00 3.36
73 74 0.938637 CGCTCAGCTCCATCGTGATC 60.939 60.000 0.00 0.00 0.00 2.92
74 75 0.103755 GCTCAGCTCCATCGTGATCA 59.896 55.000 0.00 0.00 0.00 2.92
111 112 1.227263 GATCGTGTATGGGCGCAGT 60.227 57.895 10.83 0.00 0.00 4.40
127 128 2.809601 GTACACGAGCGGGCAGTG 60.810 66.667 14.66 14.66 41.28 3.66
175 178 5.370875 AGGATGAAGAAGAAATCCTCAGG 57.629 43.478 0.00 0.00 45.76 3.86
205 208 3.957747 TCGCTACGTTGTAAAATCACG 57.042 42.857 0.00 0.00 0.00 4.35
206 209 2.662637 TCGCTACGTTGTAAAATCACGG 59.337 45.455 0.00 0.00 0.00 4.94
217 220 7.592164 CGTTGTAAAATCACGGGTAAAAGAAAT 59.408 33.333 0.00 0.00 0.00 2.17
220 223 8.630917 TGTAAAATCACGGGTAAAAGAAATTCA 58.369 29.630 0.00 0.00 0.00 2.57
258 262 2.222027 ACACAGTAACAAGCCTGAAGC 58.778 47.619 0.00 0.00 44.25 3.86
400 413 2.113433 CCATCTCCGTCGTCCTCGT 61.113 63.158 0.00 0.00 38.33 4.18
1031 1054 3.195698 GAAGATGGCGGCGGTGAC 61.196 66.667 9.78 0.00 0.00 3.67
1078 1107 2.094757 ATCGCTGGTCCACGTTGTGA 62.095 55.000 11.83 4.59 35.23 3.58
1083 1112 2.279918 GTCCACGTTGTGACCGCT 60.280 61.111 0.00 0.00 35.23 5.52
1084 1113 2.279851 TCCACGTTGTGACCGCTG 60.280 61.111 0.00 0.00 35.23 5.18
1164 1193 2.962569 GCTTCGGCCCAAACCTTC 59.037 61.111 0.00 0.00 34.32 3.46
1226 1256 4.621460 ACGACGTAAACTGATCTGTGATTG 59.379 41.667 5.96 0.65 0.00 2.67
1802 1833 0.809385 CTCTCTGGTTCGCCGTTCTA 59.191 55.000 0.00 0.00 41.18 2.10
1808 1839 0.737219 GGTTCGCCGTTCTAGCTCTA 59.263 55.000 0.00 0.00 0.00 2.43
1820 1851 4.983671 TCTAGCTCTATGAGTTTGCGAA 57.016 40.909 0.00 0.00 31.39 4.70
1840 1871 5.175856 GCGAAGTTGTAGATCATACCATCAC 59.824 44.000 0.00 0.00 0.00 3.06
1842 1873 6.925718 CGAAGTTGTAGATCATACCATCACAT 59.074 38.462 0.00 0.00 0.00 3.21
1872 1903 3.104512 TCCCTGTTCTCGTCCATTGTAT 58.895 45.455 0.00 0.00 0.00 2.29
1873 1904 3.132289 TCCCTGTTCTCGTCCATTGTATC 59.868 47.826 0.00 0.00 0.00 2.24
1926 1963 7.712639 TGTTGAGAGACCTGATAATAATTGCTC 59.287 37.037 0.00 0.00 0.00 4.26
1951 1988 1.753649 TGGTGAGCTCTATGCAGTCTC 59.246 52.381 16.19 0.00 45.94 3.36
1953 1990 2.430332 GGTGAGCTCTATGCAGTCTCTT 59.570 50.000 16.19 0.00 45.94 2.85
1956 1993 2.692557 GAGCTCTATGCAGTCTCTTGGA 59.307 50.000 6.43 0.00 45.94 3.53
1957 1994 2.430332 AGCTCTATGCAGTCTCTTGGAC 59.570 50.000 0.00 0.00 45.94 4.02
1970 2007 2.428890 CTCTTGGACGAGATTACTGGCT 59.571 50.000 0.00 0.00 32.74 4.75
1975 2012 3.258225 CGAGATTACTGGCTCGTGG 57.742 57.895 0.00 0.00 46.43 4.94
1976 2013 0.872021 CGAGATTACTGGCTCGTGGC 60.872 60.000 3.80 3.80 46.43 5.01
1977 2014 0.175760 GAGATTACTGGCTCGTGGCA 59.824 55.000 13.36 13.36 46.87 4.92
1994 2031 1.810532 CACCGTCAGCTAGTCCTCC 59.189 63.158 0.00 0.00 0.00 4.30
1995 2032 0.681564 CACCGTCAGCTAGTCCTCCT 60.682 60.000 0.00 0.00 0.00 3.69
1996 2033 0.681564 ACCGTCAGCTAGTCCTCCTG 60.682 60.000 0.00 0.00 0.00 3.86
1997 2034 0.681564 CCGTCAGCTAGTCCTCCTGT 60.682 60.000 0.00 0.00 0.00 4.00
1998 2035 0.453793 CGTCAGCTAGTCCTCCTGTG 59.546 60.000 0.00 0.00 0.00 3.66
2000 2037 1.474879 GTCAGCTAGTCCTCCTGTGTC 59.525 57.143 0.00 0.00 0.00 3.67
2001 2038 0.820871 CAGCTAGTCCTCCTGTGTCC 59.179 60.000 0.00 0.00 0.00 4.02
2004 2041 1.623811 GCTAGTCCTCCTGTGTCCAAA 59.376 52.381 0.00 0.00 0.00 3.28
2006 2043 2.640316 AGTCCTCCTGTGTCCAAAAC 57.360 50.000 0.00 0.00 0.00 2.43
2007 2044 1.843851 AGTCCTCCTGTGTCCAAAACA 59.156 47.619 0.00 0.00 34.78 2.83
2008 2045 2.443255 AGTCCTCCTGTGTCCAAAACAT 59.557 45.455 0.00 0.00 40.80 2.71
2009 2046 2.554032 GTCCTCCTGTGTCCAAAACATG 59.446 50.000 0.00 0.00 40.80 3.21
2010 2047 2.174639 TCCTCCTGTGTCCAAAACATGT 59.825 45.455 0.00 0.00 40.80 3.21
2011 2048 3.392947 TCCTCCTGTGTCCAAAACATGTA 59.607 43.478 0.00 0.00 40.80 2.29
2012 2049 4.042809 TCCTCCTGTGTCCAAAACATGTAT 59.957 41.667 0.00 0.00 40.80 2.29
2013 2050 4.396166 CCTCCTGTGTCCAAAACATGTATC 59.604 45.833 0.00 0.00 40.80 2.24
2014 2051 4.000325 TCCTGTGTCCAAAACATGTATCG 59.000 43.478 0.00 0.00 40.80 2.92
2015 2052 3.751175 CCTGTGTCCAAAACATGTATCGT 59.249 43.478 0.00 0.00 40.80 3.73
2016 2053 4.378356 CCTGTGTCCAAAACATGTATCGTG 60.378 45.833 0.00 0.00 40.80 4.35
2017 2054 3.058570 TGTGTCCAAAACATGTATCGTGC 60.059 43.478 0.00 0.00 40.80 5.34
2018 2055 3.188460 GTGTCCAAAACATGTATCGTGCT 59.812 43.478 0.00 0.00 40.80 4.40
2019 2056 3.188254 TGTCCAAAACATGTATCGTGCTG 59.812 43.478 0.00 0.00 31.20 4.41
2020 2057 3.188460 GTCCAAAACATGTATCGTGCTGT 59.812 43.478 0.00 0.00 0.00 4.40
2021 2058 3.818210 TCCAAAACATGTATCGTGCTGTT 59.182 39.130 0.00 0.00 33.45 3.16
2022 2059 4.277174 TCCAAAACATGTATCGTGCTGTTT 59.723 37.500 0.00 0.00 42.05 2.83
2023 2060 5.470437 TCCAAAACATGTATCGTGCTGTTTA 59.530 36.000 0.00 0.00 40.03 2.01
2024 2061 5.567534 CCAAAACATGTATCGTGCTGTTTAC 59.432 40.000 0.00 0.00 40.03 2.01
2025 2062 6.370593 CAAAACATGTATCGTGCTGTTTACT 58.629 36.000 0.00 0.00 40.03 2.24
2026 2063 6.554334 AAACATGTATCGTGCTGTTTACTT 57.446 33.333 0.00 0.00 39.37 2.24
2027 2064 5.530519 ACATGTATCGTGCTGTTTACTTG 57.469 39.130 0.00 0.00 0.00 3.16
2028 2065 4.994852 ACATGTATCGTGCTGTTTACTTGT 59.005 37.500 0.00 0.00 31.77 3.16
2029 2066 5.468746 ACATGTATCGTGCTGTTTACTTGTT 59.531 36.000 0.00 0.00 32.33 2.83
2030 2067 5.994887 TGTATCGTGCTGTTTACTTGTTT 57.005 34.783 0.00 0.00 0.00 2.83
2031 2068 6.366315 TGTATCGTGCTGTTTACTTGTTTT 57.634 33.333 0.00 0.00 0.00 2.43
2032 2069 7.479897 TGTATCGTGCTGTTTACTTGTTTTA 57.520 32.000 0.00 0.00 0.00 1.52
2033 2070 8.090250 TGTATCGTGCTGTTTACTTGTTTTAT 57.910 30.769 0.00 0.00 0.00 1.40
2034 2071 9.205719 TGTATCGTGCTGTTTACTTGTTTTATA 57.794 29.630 0.00 0.00 0.00 0.98
2037 2074 8.367943 TCGTGCTGTTTACTTGTTTTATAAGA 57.632 30.769 0.00 0.00 0.00 2.10
2038 2075 8.492748 TCGTGCTGTTTACTTGTTTTATAAGAG 58.507 33.333 0.00 0.00 0.00 2.85
2039 2076 8.280497 CGTGCTGTTTACTTGTTTTATAAGAGT 58.720 33.333 0.00 0.00 0.00 3.24
2040 2077 9.946165 GTGCTGTTTACTTGTTTTATAAGAGTT 57.054 29.630 0.00 0.00 0.00 3.01
2057 2094 6.902771 AAGAGTTAGTCAGAAACTAGAGCA 57.097 37.500 0.00 0.00 41.47 4.26
2058 2095 6.902771 AGAGTTAGTCAGAAACTAGAGCAA 57.097 37.500 0.00 0.00 41.47 3.91
2059 2096 6.919721 AGAGTTAGTCAGAAACTAGAGCAAG 58.080 40.000 0.00 0.00 41.47 4.01
2060 2097 6.492087 AGAGTTAGTCAGAAACTAGAGCAAGT 59.508 38.462 0.00 0.00 41.47 3.16
2061 2098 7.014808 AGAGTTAGTCAGAAACTAGAGCAAGTT 59.985 37.037 0.00 0.00 41.47 2.66
2063 2100 7.988028 AGTTAGTCAGAAACTAGAGCAAGTTTT 59.012 33.333 11.61 1.44 46.92 2.43
2064 2101 6.610741 AGTCAGAAACTAGAGCAAGTTTTG 57.389 37.500 11.61 11.32 46.92 2.44
2065 2102 6.349300 AGTCAGAAACTAGAGCAAGTTTTGA 58.651 36.000 11.61 12.76 46.92 2.69
2066 2103 6.823689 AGTCAGAAACTAGAGCAAGTTTTGAA 59.176 34.615 11.61 1.19 46.92 2.69
2067 2104 7.336931 AGTCAGAAACTAGAGCAAGTTTTGAAA 59.663 33.333 11.61 0.00 46.92 2.69
2068 2105 7.968405 GTCAGAAACTAGAGCAAGTTTTGAAAA 59.032 33.333 11.61 0.00 46.92 2.29
2069 2106 8.519526 TCAGAAACTAGAGCAAGTTTTGAAAAA 58.480 29.630 11.61 0.00 46.92 1.94
2146 2183 7.127917 ACCATTTCAAAAATTGATTAACCGC 57.872 32.000 0.00 0.00 39.84 5.68
2147 2184 6.128688 ACCATTTCAAAAATTGATTAACCGCG 60.129 34.615 0.00 0.00 39.84 6.46
2148 2185 6.128688 CCATTTCAAAAATTGATTAACCGCGT 60.129 34.615 4.92 0.00 39.84 6.01
2149 2186 7.062371 CCATTTCAAAAATTGATTAACCGCGTA 59.938 33.333 4.92 0.00 39.84 4.42
2150 2187 8.591312 CATTTCAAAAATTGATTAACCGCGTAT 58.409 29.630 4.92 0.00 39.84 3.06
2151 2188 8.522178 TTTCAAAAATTGATTAACCGCGTATT 57.478 26.923 4.92 1.06 39.84 1.89
2152 2189 8.522178 TTCAAAAATTGATTAACCGCGTATTT 57.478 26.923 4.92 0.00 39.84 1.40
2153 2190 7.943952 TCAAAAATTGATTAACCGCGTATTTG 58.056 30.769 4.92 0.00 34.08 2.32
2154 2191 7.808381 TCAAAAATTGATTAACCGCGTATTTGA 59.192 29.630 4.92 0.86 34.08 2.69
2155 2192 8.428536 CAAAAATTGATTAACCGCGTATTTGAA 58.571 29.630 4.92 0.00 0.00 2.69
2156 2193 8.696410 AAAATTGATTAACCGCGTATTTGAAT 57.304 26.923 4.92 0.00 0.00 2.57
2157 2194 9.790389 AAAATTGATTAACCGCGTATTTGAATA 57.210 25.926 4.92 0.00 0.00 1.75
2158 2195 9.790389 AAATTGATTAACCGCGTATTTGAATAA 57.210 25.926 4.92 0.00 0.00 1.40
2159 2196 9.959749 AATTGATTAACCGCGTATTTGAATAAT 57.040 25.926 4.92 0.75 0.00 1.28
2161 2198 9.866936 TTGATTAACCGCGTATTTGAATAATAC 57.133 29.630 4.92 0.00 0.00 1.89
2162 2199 8.497554 TGATTAACCGCGTATTTGAATAATACC 58.502 33.333 4.92 0.00 31.22 2.73
2163 2200 8.611654 ATTAACCGCGTATTTGAATAATACCT 57.388 30.769 4.92 0.00 31.22 3.08
2164 2201 9.709495 ATTAACCGCGTATTTGAATAATACCTA 57.291 29.630 4.92 0.00 31.22 3.08
2165 2202 9.539825 TTAACCGCGTATTTGAATAATACCTAA 57.460 29.630 4.92 0.00 31.22 2.69
2166 2203 7.412137 ACCGCGTATTTGAATAATACCTAAC 57.588 36.000 4.92 0.00 31.22 2.34
2167 2204 6.424812 ACCGCGTATTTGAATAATACCTAACC 59.575 38.462 4.92 0.00 31.22 2.85
2168 2205 6.647895 CCGCGTATTTGAATAATACCTAACCT 59.352 38.462 4.92 0.00 31.22 3.50
2169 2206 7.359765 CCGCGTATTTGAATAATACCTAACCTG 60.360 40.741 4.92 0.00 31.22 4.00
2170 2207 7.170320 CGCGTATTTGAATAATACCTAACCTGT 59.830 37.037 0.00 0.00 31.22 4.00
2171 2208 9.480053 GCGTATTTGAATAATACCTAACCTGTA 57.520 33.333 0.00 0.00 31.22 2.74
2186 2223 9.582648 ACCTAACCTGTATTCAAAATAGTGTTT 57.417 29.630 0.00 0.00 0.00 2.83
2187 2224 9.840427 CCTAACCTGTATTCAAAATAGTGTTTG 57.160 33.333 0.00 0.00 39.41 2.93
2188 2225 9.840427 CTAACCTGTATTCAAAATAGTGTTTGG 57.160 33.333 0.00 0.00 38.72 3.28
2189 2226 8.472007 AACCTGTATTCAAAATAGTGTTTGGA 57.528 30.769 0.00 0.00 38.72 3.53
2190 2227 8.472007 ACCTGTATTCAAAATAGTGTTTGGAA 57.528 30.769 4.80 4.80 38.72 3.53
2191 2228 8.919145 ACCTGTATTCAAAATAGTGTTTGGAAA 58.081 29.630 6.30 0.00 38.72 3.13
2192 2229 9.927668 CCTGTATTCAAAATAGTGTTTGGAAAT 57.072 29.630 6.30 0.90 38.72 2.17
2243 2280 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
2244 2281 5.798015 TTTTAACACAGTACAGACGCAAA 57.202 34.783 0.00 0.00 0.00 3.68
2245 2282 4.782252 TTAACACAGTACAGACGCAAAC 57.218 40.909 0.00 0.00 0.00 2.93
2247 2284 0.111266 CACAGTACAGACGCAAACGC 60.111 55.000 0.00 0.00 45.53 4.84
2248 2285 0.249322 ACAGTACAGACGCAAACGCT 60.249 50.000 0.00 0.00 45.53 5.07
2249 2286 0.435008 CAGTACAGACGCAAACGCTC 59.565 55.000 0.00 0.00 45.53 5.03
2250 2287 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.000 0.00 0.00 45.53 4.26
2251 2288 1.068474 GTACAGACGCAAACGCTCAT 58.932 50.000 0.00 0.00 45.53 2.90
2252 2289 2.094906 AGTACAGACGCAAACGCTCATA 60.095 45.455 0.00 0.00 45.53 2.15
2253 2290 2.010145 ACAGACGCAAACGCTCATAT 57.990 45.000 0.00 0.00 45.53 1.78
2254 2291 3.159353 ACAGACGCAAACGCTCATATA 57.841 42.857 0.00 0.00 45.53 0.86
2255 2292 2.858344 ACAGACGCAAACGCTCATATAC 59.142 45.455 0.00 0.00 45.53 1.47
2256 2293 2.857748 CAGACGCAAACGCTCATATACA 59.142 45.455 0.00 0.00 45.53 2.29
2257 2294 2.858344 AGACGCAAACGCTCATATACAC 59.142 45.455 0.00 0.00 45.53 2.90
2258 2295 1.586578 ACGCAAACGCTCATATACACG 59.413 47.619 0.00 0.00 45.53 4.49
2259 2296 1.586578 CGCAAACGCTCATATACACGT 59.413 47.619 0.00 0.00 41.16 4.49
2260 2297 2.594269 CGCAAACGCTCATATACACGTG 60.594 50.000 15.48 15.48 39.00 4.49
2261 2298 2.845764 GCAAACGCTCATATACACGTGC 60.846 50.000 17.22 0.00 39.00 5.34
2262 2299 2.287393 AACGCTCATATACACGTGCA 57.713 45.000 17.22 2.06 39.00 4.57
2263 2300 2.509052 ACGCTCATATACACGTGCAT 57.491 45.000 17.22 11.52 37.37 3.96
2264 2301 3.636282 ACGCTCATATACACGTGCATA 57.364 42.857 17.22 13.68 37.37 3.14
2265 2302 3.305964 ACGCTCATATACACGTGCATAC 58.694 45.455 17.22 0.00 37.37 2.39
2266 2303 3.243267 ACGCTCATATACACGTGCATACA 60.243 43.478 17.22 2.39 37.37 2.29
2267 2304 3.733727 CGCTCATATACACGTGCATACAA 59.266 43.478 17.22 3.76 0.00 2.41
2268 2305 4.385748 CGCTCATATACACGTGCATACAAT 59.614 41.667 17.22 0.00 0.00 2.71
2269 2306 5.443301 CGCTCATATACACGTGCATACAATC 60.443 44.000 17.22 3.09 0.00 2.67
2270 2307 5.405269 GCTCATATACACGTGCATACAATCA 59.595 40.000 17.22 0.00 0.00 2.57
2271 2308 6.091305 GCTCATATACACGTGCATACAATCAT 59.909 38.462 17.22 0.00 0.00 2.45
2272 2309 7.581011 TCATATACACGTGCATACAATCATC 57.419 36.000 17.22 0.00 0.00 2.92
2273 2310 6.589907 TCATATACACGTGCATACAATCATCC 59.410 38.462 17.22 0.00 0.00 3.51
2274 2311 3.266510 ACACGTGCATACAATCATCCT 57.733 42.857 17.22 0.00 0.00 3.24
2275 2312 3.609853 ACACGTGCATACAATCATCCTT 58.390 40.909 17.22 0.00 0.00 3.36
2276 2313 4.765273 ACACGTGCATACAATCATCCTTA 58.235 39.130 17.22 0.00 0.00 2.69
2277 2314 5.368145 ACACGTGCATACAATCATCCTTAT 58.632 37.500 17.22 0.00 0.00 1.73
2278 2315 5.237127 ACACGTGCATACAATCATCCTTATG 59.763 40.000 17.22 0.00 0.00 1.90
2279 2316 5.466393 CACGTGCATACAATCATCCTTATGA 59.534 40.000 0.82 0.00 46.01 2.15
2280 2317 6.018016 CACGTGCATACAATCATCCTTATGAA 60.018 38.462 0.82 0.00 45.12 2.57
2281 2318 6.017934 ACGTGCATACAATCATCCTTATGAAC 60.018 38.462 0.00 0.00 45.12 3.18
2282 2319 6.365839 GTGCATACAATCATCCTTATGAACG 58.634 40.000 0.00 0.00 45.12 3.95
2283 2320 5.049474 TGCATACAATCATCCTTATGAACGC 60.049 40.000 0.00 0.00 45.12 4.84
2284 2321 5.049474 GCATACAATCATCCTTATGAACGCA 60.049 40.000 0.00 0.00 45.12 5.24
2285 2322 4.882671 ACAATCATCCTTATGAACGCAC 57.117 40.909 0.00 0.00 45.12 5.34
2286 2323 4.260985 ACAATCATCCTTATGAACGCACA 58.739 39.130 0.00 0.00 45.12 4.57
2287 2324 4.094887 ACAATCATCCTTATGAACGCACAC 59.905 41.667 0.00 0.00 45.12 3.82
2288 2325 3.326836 TCATCCTTATGAACGCACACA 57.673 42.857 0.00 0.00 39.20 3.72
2289 2326 3.872696 TCATCCTTATGAACGCACACAT 58.127 40.909 0.00 0.00 39.20 3.21
2290 2327 3.622612 TCATCCTTATGAACGCACACATG 59.377 43.478 0.00 0.00 39.20 3.21
2291 2328 3.789791 CATCCTTATGAACGCACACATGC 60.790 47.826 0.00 0.00 41.02 4.06
2292 2329 6.209642 CATCCTTATGAACGCACACATGCA 62.210 45.833 0.00 0.00 43.05 3.96
2302 2339 1.442769 CACACATGCACACTCTACCC 58.557 55.000 0.00 0.00 0.00 3.69
2303 2340 0.324943 ACACATGCACACTCTACCCC 59.675 55.000 0.00 0.00 0.00 4.95
2304 2341 0.615331 CACATGCACACTCTACCCCT 59.385 55.000 0.00 0.00 0.00 4.79
2305 2342 1.831106 CACATGCACACTCTACCCCTA 59.169 52.381 0.00 0.00 0.00 3.53
2306 2343 1.831736 ACATGCACACTCTACCCCTAC 59.168 52.381 0.00 0.00 0.00 3.18
2307 2344 1.112113 ATGCACACTCTACCCCTACG 58.888 55.000 0.00 0.00 0.00 3.51
2308 2345 0.038599 TGCACACTCTACCCCTACGA 59.961 55.000 0.00 0.00 0.00 3.43
2309 2346 0.739561 GCACACTCTACCCCTACGAG 59.260 60.000 0.00 0.00 0.00 4.18
2310 2347 0.739561 CACACTCTACCCCTACGAGC 59.260 60.000 0.00 0.00 0.00 5.03
2311 2348 0.330604 ACACTCTACCCCTACGAGCA 59.669 55.000 0.00 0.00 0.00 4.26
2312 2349 0.739561 CACTCTACCCCTACGAGCAC 59.260 60.000 0.00 0.00 0.00 4.40
2313 2350 0.395448 ACTCTACCCCTACGAGCACC 60.395 60.000 0.00 0.00 0.00 5.01
2314 2351 0.106619 CTCTACCCCTACGAGCACCT 60.107 60.000 0.00 0.00 0.00 4.00
2315 2352 0.106819 TCTACCCCTACGAGCACCTC 60.107 60.000 0.00 0.00 0.00 3.85
2316 2353 1.076485 TACCCCTACGAGCACCTCC 60.076 63.158 0.00 0.00 0.00 4.30
2317 2354 2.898920 TACCCCTACGAGCACCTCCG 62.899 65.000 0.00 0.00 0.00 4.63
2318 2355 2.439701 CCCTACGAGCACCTCCGA 60.440 66.667 0.00 0.00 0.00 4.55
2319 2356 2.050350 CCCTACGAGCACCTCCGAA 61.050 63.158 0.00 0.00 0.00 4.30
2320 2357 1.601419 CCCTACGAGCACCTCCGAAA 61.601 60.000 0.00 0.00 0.00 3.46
2321 2358 0.245539 CCTACGAGCACCTCCGAAAA 59.754 55.000 0.00 0.00 0.00 2.29
2322 2359 1.337447 CCTACGAGCACCTCCGAAAAA 60.337 52.381 0.00 0.00 0.00 1.94
2323 2360 1.725164 CTACGAGCACCTCCGAAAAAC 59.275 52.381 0.00 0.00 0.00 2.43
2324 2361 0.106149 ACGAGCACCTCCGAAAAACT 59.894 50.000 0.00 0.00 0.00 2.66
2325 2362 0.512952 CGAGCACCTCCGAAAAACTG 59.487 55.000 0.00 0.00 0.00 3.16
2326 2363 1.872237 CGAGCACCTCCGAAAAACTGA 60.872 52.381 0.00 0.00 0.00 3.41
2327 2364 1.801178 GAGCACCTCCGAAAAACTGAG 59.199 52.381 0.00 0.00 0.00 3.35
2328 2365 0.238553 GCACCTCCGAAAAACTGAGC 59.761 55.000 0.00 0.00 0.00 4.26
2329 2366 0.875059 CACCTCCGAAAAACTGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
2330 2367 0.602905 ACCTCCGAAAAACTGAGCCG 60.603 55.000 0.00 0.00 0.00 5.52
2331 2368 1.298859 CCTCCGAAAAACTGAGCCGG 61.299 60.000 0.00 0.00 41.36 6.13
2332 2369 1.912371 CTCCGAAAAACTGAGCCGGC 61.912 60.000 21.89 21.89 39.96 6.13
2333 2370 2.258013 CCGAAAAACTGAGCCGGCA 61.258 57.895 31.54 7.98 33.47 5.69
2334 2371 1.586154 CCGAAAAACTGAGCCGGCAT 61.586 55.000 31.54 14.28 33.47 4.40
2335 2372 1.083489 CGAAAAACTGAGCCGGCATA 58.917 50.000 31.54 16.21 0.00 3.14
2336 2373 1.670811 CGAAAAACTGAGCCGGCATAT 59.329 47.619 31.54 8.11 0.00 1.78
2337 2374 2.286418 CGAAAAACTGAGCCGGCATATC 60.286 50.000 31.54 18.63 0.00 1.63
2338 2375 2.418368 AAAACTGAGCCGGCATATCA 57.582 45.000 31.54 22.44 0.00 2.15
2339 2376 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
2340 2377 2.175878 AACTGAGCCGGCATATCATC 57.824 50.000 31.54 16.99 0.00 2.92
2341 2378 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
2342 2379 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
2343 2380 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
2344 2381 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2345 2382 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
2346 2383 2.481952 GAGCCGGCATATCATCTTGAAC 59.518 50.000 31.54 0.00 0.00 3.18
2347 2384 1.537202 GCCGGCATATCATCTTGAACC 59.463 52.381 24.80 0.00 0.00 3.62
2348 2385 2.154462 CCGGCATATCATCTTGAACCC 58.846 52.381 0.00 0.00 0.00 4.11
2349 2386 2.224621 CCGGCATATCATCTTGAACCCT 60.225 50.000 0.00 0.00 0.00 4.34
2350 2387 2.810274 CGGCATATCATCTTGAACCCTG 59.190 50.000 0.00 0.00 0.00 4.45
2351 2388 3.152341 GGCATATCATCTTGAACCCTGG 58.848 50.000 0.00 0.00 0.00 4.45
2352 2389 3.435601 GGCATATCATCTTGAACCCTGGT 60.436 47.826 0.00 0.00 0.00 4.00
2353 2390 3.567164 GCATATCATCTTGAACCCTGGTG 59.433 47.826 0.00 0.00 0.00 4.17
2354 2391 2.814805 ATCATCTTGAACCCTGGTGG 57.185 50.000 0.00 0.00 41.37 4.61
2364 2401 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
2365 2402 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
2389 2426 7.065216 CCATAGATTGGTTCGCATATAACTG 57.935 40.000 0.00 0.00 40.99 3.16
2390 2427 6.873605 CCATAGATTGGTTCGCATATAACTGA 59.126 38.462 0.00 0.00 40.99 3.41
2391 2428 7.387673 CCATAGATTGGTTCGCATATAACTGAA 59.612 37.037 0.00 0.00 40.99 3.02
2392 2429 8.773645 CATAGATTGGTTCGCATATAACTGAAA 58.226 33.333 0.00 0.00 0.00 2.69
2393 2430 7.624360 AGATTGGTTCGCATATAACTGAAAA 57.376 32.000 0.00 0.00 0.00 2.29
2394 2431 8.050778 AGATTGGTTCGCATATAACTGAAAAA 57.949 30.769 0.00 0.00 0.00 1.94
2395 2432 8.686334 AGATTGGTTCGCATATAACTGAAAAAT 58.314 29.630 0.00 0.00 0.00 1.82
2396 2433 8.633075 ATTGGTTCGCATATAACTGAAAAATG 57.367 30.769 0.00 0.00 0.00 2.32
2397 2434 7.151999 TGGTTCGCATATAACTGAAAAATGT 57.848 32.000 0.00 0.00 0.00 2.71
2398 2435 8.270080 TGGTTCGCATATAACTGAAAAATGTA 57.730 30.769 0.00 0.00 0.00 2.29
2399 2436 8.731605 TGGTTCGCATATAACTGAAAAATGTAA 58.268 29.630 0.00 0.00 0.00 2.41
2400 2437 9.562583 GGTTCGCATATAACTGAAAAATGTAAA 57.437 29.630 0.00 0.00 0.00 2.01
2402 2439 8.814733 TCGCATATAACTGAAAAATGTAAACG 57.185 30.769 0.00 0.00 0.00 3.60
2403 2440 8.657729 TCGCATATAACTGAAAAATGTAAACGA 58.342 29.630 0.00 0.00 0.00 3.85
2404 2441 9.268255 CGCATATAACTGAAAAATGTAAACGAA 57.732 29.630 0.00 0.00 0.00 3.85
2440 2477 8.141268 ACAAATGTTCCTTATGTACACAAAAGG 58.859 33.333 20.17 20.17 39.93 3.11
2441 2478 7.833285 AATGTTCCTTATGTACACAAAAGGT 57.167 32.000 23.08 9.47 39.62 3.50
2458 2495 9.790389 CACAAAAGGTGTACAAAGTACATAAAA 57.210 29.630 12.53 0.00 42.75 1.52
2477 2514 2.875080 AAAGTAGACATCAAACGCGC 57.125 45.000 5.73 0.00 0.00 6.86
2478 2515 2.080286 AAGTAGACATCAAACGCGCT 57.920 45.000 5.73 0.00 0.00 5.92
2479 2516 1.350193 AGTAGACATCAAACGCGCTG 58.650 50.000 5.73 3.77 0.00 5.18
2480 2517 1.067846 AGTAGACATCAAACGCGCTGA 60.068 47.619 5.73 10.41 0.00 4.26
2481 2518 1.059264 GTAGACATCAAACGCGCTGAC 59.941 52.381 13.12 2.36 0.00 3.51
2482 2519 0.319900 AGACATCAAACGCGCTGACT 60.320 50.000 13.12 4.48 0.00 3.41
2483 2520 1.067846 AGACATCAAACGCGCTGACTA 60.068 47.619 13.12 0.00 0.00 2.59
2484 2521 1.321743 GACATCAAACGCGCTGACTAG 59.678 52.381 13.12 9.17 0.00 2.57
2485 2522 1.067846 ACATCAAACGCGCTGACTAGA 60.068 47.619 13.12 0.00 0.00 2.43
2486 2523 1.992667 CATCAAACGCGCTGACTAGAA 59.007 47.619 13.12 0.00 0.00 2.10
2487 2524 2.143008 TCAAACGCGCTGACTAGAAA 57.857 45.000 5.73 0.00 0.00 2.52
2488 2525 1.790623 TCAAACGCGCTGACTAGAAAC 59.209 47.619 5.73 0.00 0.00 2.78
2489 2526 1.136336 CAAACGCGCTGACTAGAAACC 60.136 52.381 5.73 0.00 0.00 3.27
2490 2527 1.007336 AACGCGCTGACTAGAAACCG 61.007 55.000 5.73 0.00 0.00 4.44
2491 2528 1.154093 CGCGCTGACTAGAAACCGA 60.154 57.895 5.56 0.00 0.00 4.69
2492 2529 0.525668 CGCGCTGACTAGAAACCGAT 60.526 55.000 5.56 0.00 0.00 4.18
2493 2530 1.641577 GCGCTGACTAGAAACCGATT 58.358 50.000 0.00 0.00 0.00 3.34
2494 2531 1.324736 GCGCTGACTAGAAACCGATTG 59.675 52.381 0.00 0.00 0.00 2.67
2495 2532 1.324736 CGCTGACTAGAAACCGATTGC 59.675 52.381 0.00 0.00 0.00 3.56
2496 2533 2.622436 GCTGACTAGAAACCGATTGCT 58.378 47.619 0.00 0.00 0.00 3.91
2497 2534 2.349886 GCTGACTAGAAACCGATTGCTG 59.650 50.000 0.00 0.00 0.00 4.41
2498 2535 3.849911 CTGACTAGAAACCGATTGCTGA 58.150 45.455 0.00 0.00 0.00 4.26
2499 2536 3.849911 TGACTAGAAACCGATTGCTGAG 58.150 45.455 0.00 0.00 0.00 3.35
2500 2537 2.605366 GACTAGAAACCGATTGCTGAGC 59.395 50.000 0.00 0.00 0.00 4.26
2501 2538 1.936547 CTAGAAACCGATTGCTGAGCC 59.063 52.381 0.23 0.00 0.00 4.70
2502 2539 0.036732 AGAAACCGATTGCTGAGCCA 59.963 50.000 0.23 0.00 0.00 4.75
2503 2540 0.449388 GAAACCGATTGCTGAGCCAG 59.551 55.000 0.23 0.00 34.12 4.85
2512 2549 3.207669 CTGAGCCAGCCCATTCGC 61.208 66.667 0.00 0.00 0.00 4.70
2513 2550 3.982316 CTGAGCCAGCCCATTCGCA 62.982 63.158 0.00 0.00 0.00 5.10
2514 2551 2.751436 GAGCCAGCCCATTCGCAA 60.751 61.111 0.00 0.00 0.00 4.85
2515 2552 2.043652 AGCCAGCCCATTCGCAAT 60.044 55.556 0.00 0.00 0.00 3.56
2516 2553 0.819259 GAGCCAGCCCATTCGCAATA 60.819 55.000 0.00 0.00 0.00 1.90
2517 2554 0.178981 AGCCAGCCCATTCGCAATAT 60.179 50.000 0.00 0.00 0.00 1.28
2518 2555 1.073763 AGCCAGCCCATTCGCAATATA 59.926 47.619 0.00 0.00 0.00 0.86
2519 2556 1.470098 GCCAGCCCATTCGCAATATAG 59.530 52.381 0.00 0.00 0.00 1.31
2520 2557 1.470098 CCAGCCCATTCGCAATATAGC 59.530 52.381 0.00 0.00 0.00 2.97
2521 2558 2.430465 CAGCCCATTCGCAATATAGCT 58.570 47.619 0.00 0.00 0.00 3.32
2522 2559 2.816087 CAGCCCATTCGCAATATAGCTT 59.184 45.455 0.00 0.00 0.00 3.74
2523 2560 2.816087 AGCCCATTCGCAATATAGCTTG 59.184 45.455 0.00 0.00 0.00 4.01
2524 2561 2.813754 GCCCATTCGCAATATAGCTTGA 59.186 45.455 0.00 0.00 0.00 3.02
2525 2562 3.120060 GCCCATTCGCAATATAGCTTGAG 60.120 47.826 0.00 0.00 0.00 3.02
2526 2563 3.120060 CCCATTCGCAATATAGCTTGAGC 60.120 47.826 0.00 0.00 42.49 4.26
2542 2579 6.777526 GCTTGAGCGAAATGTATTATCTCT 57.222 37.500 0.00 0.00 0.00 3.10
2543 2580 6.816377 GCTTGAGCGAAATGTATTATCTCTC 58.184 40.000 0.00 0.00 0.00 3.20
2544 2581 6.399459 GCTTGAGCGAAATGTATTATCTCTCG 60.399 42.308 0.00 0.00 0.00 4.04
2545 2582 5.461526 TGAGCGAAATGTATTATCTCTCGG 58.538 41.667 0.00 0.00 0.00 4.63
2546 2583 5.009710 TGAGCGAAATGTATTATCTCTCGGT 59.990 40.000 0.00 0.00 38.15 4.69
2547 2584 6.206048 TGAGCGAAATGTATTATCTCTCGGTA 59.794 38.462 0.00 0.00 35.89 4.02
2548 2585 6.613233 AGCGAAATGTATTATCTCTCGGTAG 58.387 40.000 0.00 0.00 34.21 3.18
2549 2586 5.800941 GCGAAATGTATTATCTCTCGGTAGG 59.199 44.000 0.00 0.00 0.00 3.18
2550 2587 6.323266 CGAAATGTATTATCTCTCGGTAGGG 58.677 44.000 0.00 0.00 0.00 3.53
2551 2588 6.607004 AAATGTATTATCTCTCGGTAGGGG 57.393 41.667 0.00 0.00 0.00 4.79
2552 2589 3.428532 TGTATTATCTCTCGGTAGGGGC 58.571 50.000 0.00 0.00 0.00 5.80
2553 2590 1.546961 ATTATCTCTCGGTAGGGGCG 58.453 55.000 0.00 0.00 0.00 6.13
2554 2591 0.475475 TTATCTCTCGGTAGGGGCGA 59.525 55.000 0.00 0.00 0.00 5.54
2555 2592 0.250640 TATCTCTCGGTAGGGGCGAC 60.251 60.000 0.00 0.00 0.00 5.19
2556 2593 2.280404 ATCTCTCGGTAGGGGCGACA 62.280 60.000 0.00 0.00 0.00 4.35
2557 2594 2.753043 TCTCGGTAGGGGCGACAC 60.753 66.667 0.00 0.00 0.00 3.67
2558 2595 3.066190 CTCGGTAGGGGCGACACA 61.066 66.667 0.00 0.00 34.58 3.72
2559 2596 2.363276 TCGGTAGGGGCGACACAT 60.363 61.111 0.00 0.00 34.58 3.21
2560 2597 1.076850 TCGGTAGGGGCGACACATA 60.077 57.895 0.00 0.00 34.58 2.29
2561 2598 1.105167 TCGGTAGGGGCGACACATAG 61.105 60.000 0.00 0.00 34.58 2.23
2562 2599 1.069258 GGTAGGGGCGACACATAGC 59.931 63.158 0.00 0.00 34.58 2.97
2568 2605 2.805546 GCGACACATAGCCCTCGA 59.194 61.111 0.00 0.00 0.00 4.04
2569 2606 1.299468 GCGACACATAGCCCTCGAG 60.299 63.158 5.13 5.13 0.00 4.04
2570 2607 1.360551 CGACACATAGCCCTCGAGG 59.639 63.158 25.36 25.36 39.47 4.63
2571 2608 1.101635 CGACACATAGCCCTCGAGGA 61.102 60.000 33.39 13.89 38.24 3.71
2572 2609 0.671251 GACACATAGCCCTCGAGGAG 59.329 60.000 33.39 22.44 38.24 3.69
2591 2628 4.776322 TGTTCCGCGGCCCATCAG 62.776 66.667 23.51 0.00 0.00 2.90
2596 2633 3.933722 CGCGGCCCATCAGGAGAT 61.934 66.667 0.00 0.00 38.24 2.75
2608 2645 3.490890 GGAGATGTTCCGCTGCAC 58.509 61.111 0.00 0.00 35.91 4.57
2609 2646 1.375908 GGAGATGTTCCGCTGCACA 60.376 57.895 0.00 0.00 35.91 4.57
2610 2647 0.745845 GGAGATGTTCCGCTGCACAT 60.746 55.000 4.02 4.02 35.91 3.21
2611 2648 0.376152 GAGATGTTCCGCTGCACATG 59.624 55.000 8.59 0.00 33.62 3.21
2612 2649 1.226491 GATGTTCCGCTGCACATGC 60.226 57.895 8.59 0.00 42.50 4.06
2623 2660 4.680934 GCTGCACATGCGTATAAAAATG 57.319 40.909 0.00 0.00 45.83 2.32
2624 2661 4.104776 GCTGCACATGCGTATAAAAATGT 58.895 39.130 0.00 0.00 45.83 2.71
2625 2662 4.562394 GCTGCACATGCGTATAAAAATGTT 59.438 37.500 0.00 0.00 45.83 2.71
2626 2663 5.275881 GCTGCACATGCGTATAAAAATGTTC 60.276 40.000 0.00 0.00 45.83 3.18
2627 2664 5.098893 TGCACATGCGTATAAAAATGTTCC 58.901 37.500 0.00 0.00 45.83 3.62
2628 2665 5.098893 GCACATGCGTATAAAAATGTTCCA 58.901 37.500 0.00 0.00 30.98 3.53
2629 2666 5.004345 GCACATGCGTATAAAAATGTTCCAC 59.996 40.000 0.00 0.00 30.98 4.02
2630 2667 6.321717 CACATGCGTATAAAAATGTTCCACT 58.678 36.000 0.00 0.00 30.98 4.00
2631 2668 7.468441 CACATGCGTATAAAAATGTTCCACTA 58.532 34.615 0.00 0.00 30.98 2.74
2632 2669 7.428183 CACATGCGTATAAAAATGTTCCACTAC 59.572 37.037 0.00 0.00 30.98 2.73
2633 2670 7.119992 ACATGCGTATAAAAATGTTCCACTACA 59.880 33.333 0.00 0.00 28.99 2.74
2634 2671 7.618502 TGCGTATAAAAATGTTCCACTACAT 57.381 32.000 0.00 0.00 40.37 2.29
2761 2798 9.435688 AATGAACTTATTAAAAAGGATTGCCAC 57.564 29.630 0.00 0.00 36.29 5.01
2762 2799 7.382898 TGAACTTATTAAAAAGGATTGCCACC 58.617 34.615 0.00 0.00 36.29 4.61
2763 2800 6.294361 ACTTATTAAAAAGGATTGCCACCC 57.706 37.500 0.00 0.00 36.29 4.61
2764 2801 6.022958 ACTTATTAAAAAGGATTGCCACCCT 58.977 36.000 0.00 0.00 36.29 4.34
2765 2802 6.500400 ACTTATTAAAAAGGATTGCCACCCTT 59.500 34.615 0.00 0.00 44.13 3.95
2775 2812 8.797436 AAGGATTGCCACCCTTTAATATATTT 57.203 30.769 2.68 0.00 39.61 1.40
2776 2813 8.422577 AGGATTGCCACCCTTTAATATATTTC 57.577 34.615 2.68 0.00 36.29 2.17
2777 2814 8.010105 AGGATTGCCACCCTTTAATATATTTCA 58.990 33.333 2.68 0.00 36.29 2.69
2778 2815 8.646900 GGATTGCCACCCTTTAATATATTTCAA 58.353 33.333 2.68 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.101219 GCCCGATTTTCTGATGGCAC 59.899 55.000 0.00 0.00 38.73 5.01
4 5 0.323269 TGCCCGATTTTCTGATGGCA 60.323 50.000 0.00 0.00 45.96 4.92
5 6 0.383231 CTGCCCGATTTTCTGATGGC 59.617 55.000 0.00 0.00 39.33 4.40
6 7 1.027357 CCTGCCCGATTTTCTGATGG 58.973 55.000 0.00 0.00 0.00 3.51
7 8 1.027357 CCCTGCCCGATTTTCTGATG 58.973 55.000 0.00 0.00 0.00 3.07
8 9 0.918983 TCCCTGCCCGATTTTCTGAT 59.081 50.000 0.00 0.00 0.00 2.90
9 10 0.918983 ATCCCTGCCCGATTTTCTGA 59.081 50.000 0.00 0.00 0.00 3.27
10 11 1.312815 GATCCCTGCCCGATTTTCTG 58.687 55.000 0.00 0.00 0.00 3.02
11 12 0.183731 GGATCCCTGCCCGATTTTCT 59.816 55.000 0.00 0.00 0.00 2.52
12 13 0.106719 TGGATCCCTGCCCGATTTTC 60.107 55.000 9.90 0.00 0.00 2.29
13 14 0.395724 GTGGATCCCTGCCCGATTTT 60.396 55.000 9.90 0.00 0.00 1.82
14 15 1.227383 GTGGATCCCTGCCCGATTT 59.773 57.895 9.90 0.00 0.00 2.17
15 16 1.694169 AGTGGATCCCTGCCCGATT 60.694 57.895 9.90 0.00 0.00 3.34
16 17 2.040464 AGTGGATCCCTGCCCGAT 60.040 61.111 9.90 0.00 0.00 4.18
27 28 2.388735 TGCTAAGGACGATGAGTGGAT 58.611 47.619 0.00 0.00 0.00 3.41
29 30 2.363680 AGATGCTAAGGACGATGAGTGG 59.636 50.000 0.00 0.00 0.00 4.00
30 31 3.724508 AGATGCTAAGGACGATGAGTG 57.275 47.619 0.00 0.00 0.00 3.51
111 112 4.735132 GCACTGCCCGCTCGTGTA 62.735 66.667 10.04 0.00 0.00 2.90
127 128 2.421399 GGGAGCTTGAAGCCCATGC 61.421 63.158 20.89 7.31 43.77 4.06
157 160 3.328931 ACAGCCTGAGGATTTCTTCTTCA 59.671 43.478 0.65 0.00 38.06 3.02
175 178 1.136611 CAACGTAGCGAACTCAACAGC 60.137 52.381 0.00 0.00 0.00 4.40
220 223 6.352516 ACTGTGTTCAGAACTTCAGAATTCT 58.647 36.000 28.75 0.88 43.76 2.40
258 262 0.962356 GCCAGGTCATGTCAGGGTTG 60.962 60.000 0.00 0.00 0.00 3.77
427 440 2.046988 CGGTCCAGAGCATGTGCA 60.047 61.111 7.83 0.00 45.16 4.57
629 645 8.836413 TGTAAAGTAACAGGAAAGAATGTTCAG 58.164 33.333 0.00 0.00 31.83 3.02
815 831 0.523968 CGTTTTGGAGCATGCATCGG 60.524 55.000 21.98 0.00 35.22 4.18
816 832 0.168788 ACGTTTTGGAGCATGCATCG 59.831 50.000 21.98 11.75 35.22 3.84
1057 1080 0.108804 ACAACGTGGACCAGCGATAG 60.109 55.000 19.06 11.89 0.00 2.08
1058 1081 0.389296 CACAACGTGGACCAGCGATA 60.389 55.000 19.06 0.00 0.00 2.92
1059 1082 1.667830 CACAACGTGGACCAGCGAT 60.668 57.895 19.06 8.05 0.00 4.58
1062 1091 2.251642 GGTCACAACGTGGACCAGC 61.252 63.158 22.40 2.59 35.45 4.85
1078 1107 4.438346 GATGTAATCGGCAGCGGT 57.562 55.556 0.00 0.00 31.13 5.68
1164 1193 2.284699 AGGGTGTCTCCGGGAAGG 60.285 66.667 0.00 0.00 42.97 3.46
1212 1242 3.119602 GCAATGCACAATCACAGATCAGT 60.120 43.478 0.00 0.00 0.00 3.41
1213 1243 3.119637 TGCAATGCACAATCACAGATCAG 60.120 43.478 2.72 0.00 31.71 2.90
1214 1244 2.820787 TGCAATGCACAATCACAGATCA 59.179 40.909 2.72 0.00 31.71 2.92
1216 1246 2.823747 ACTGCAATGCACAATCACAGAT 59.176 40.909 2.72 0.00 33.79 2.90
1217 1247 2.232399 ACTGCAATGCACAATCACAGA 58.768 42.857 2.72 0.00 33.79 3.41
1218 1248 2.717580 ACTGCAATGCACAATCACAG 57.282 45.000 2.72 0.00 33.79 3.66
1535 1566 2.511600 CATGTCCTCGGAACCGGC 60.512 66.667 13.29 2.94 40.25 6.13
1744 1775 1.999634 ATAGCCCCACTGTCCATGCC 62.000 60.000 0.00 0.00 0.00 4.40
1767 1798 2.283966 AGCTACGAGCCCCAGTGT 60.284 61.111 0.00 0.00 43.77 3.55
1802 1833 3.601443 ACTTCGCAAACTCATAGAGCT 57.399 42.857 0.00 0.00 32.04 4.09
1808 1839 5.237815 TGATCTACAACTTCGCAAACTCAT 58.762 37.500 0.00 0.00 0.00 2.90
1820 1851 6.988580 CACATGTGATGGTATGATCTACAACT 59.011 38.462 21.64 0.00 33.60 3.16
1840 1871 3.618594 CGAGAACAGGGATGTAACACATG 59.381 47.826 0.00 0.00 39.27 3.21
1842 1873 2.631062 ACGAGAACAGGGATGTAACACA 59.369 45.455 0.00 0.00 0.00 3.72
1872 1903 2.102420 ACCTCACAATCTGAACACACGA 59.898 45.455 0.00 0.00 0.00 4.35
1873 1904 2.221749 CACCTCACAATCTGAACACACG 59.778 50.000 0.00 0.00 0.00 4.49
1926 1963 3.055591 CTGCATAGAGCTCACCATAACG 58.944 50.000 17.77 0.00 45.94 3.18
1940 1977 2.685388 TCTCGTCCAAGAGACTGCATAG 59.315 50.000 0.00 0.00 43.91 2.23
1951 1988 2.796383 CGAGCCAGTAATCTCGTCCAAG 60.796 54.545 3.76 0.00 44.95 3.61
1953 1990 0.738975 CGAGCCAGTAATCTCGTCCA 59.261 55.000 3.76 0.00 44.95 4.02
1970 2007 2.986979 TAGCTGACGGTGCCACGA 60.987 61.111 0.00 0.00 37.61 4.35
1972 2009 1.446272 GACTAGCTGACGGTGCCAC 60.446 63.158 0.00 0.00 0.00 5.01
1973 2010 2.646175 GGACTAGCTGACGGTGCCA 61.646 63.158 0.00 0.00 0.00 4.92
1974 2011 2.184579 GGACTAGCTGACGGTGCC 59.815 66.667 0.00 0.00 0.00 5.01
1975 2012 1.139947 GAGGACTAGCTGACGGTGC 59.860 63.158 0.00 0.00 0.00 5.01
1976 2013 0.681564 AGGAGGACTAGCTGACGGTG 60.682 60.000 0.00 0.00 0.00 4.94
1977 2014 0.681564 CAGGAGGACTAGCTGACGGT 60.682 60.000 0.00 0.00 0.00 4.83
1994 2031 4.711721 CACGATACATGTTTTGGACACAG 58.288 43.478 2.30 0.00 42.04 3.66
1995 2032 3.058570 GCACGATACATGTTTTGGACACA 60.059 43.478 2.30 0.00 42.04 3.72
1996 2033 3.188460 AGCACGATACATGTTTTGGACAC 59.812 43.478 2.30 0.00 42.04 3.67
1997 2034 3.188254 CAGCACGATACATGTTTTGGACA 59.812 43.478 2.30 0.00 43.71 4.02
1998 2035 3.188460 ACAGCACGATACATGTTTTGGAC 59.812 43.478 2.30 0.00 0.00 4.02
2000 2037 3.829886 ACAGCACGATACATGTTTTGG 57.170 42.857 2.30 0.00 0.00 3.28
2001 2038 6.370593 AGTAAACAGCACGATACATGTTTTG 58.629 36.000 2.30 2.28 41.73 2.44
2004 2041 5.468746 ACAAGTAAACAGCACGATACATGTT 59.531 36.000 2.30 0.00 37.47 2.71
2006 2043 5.530519 ACAAGTAAACAGCACGATACATG 57.469 39.130 0.00 0.00 0.00 3.21
2007 2044 6.554334 AAACAAGTAAACAGCACGATACAT 57.446 33.333 0.00 0.00 0.00 2.29
2008 2045 5.994887 AAACAAGTAAACAGCACGATACA 57.005 34.783 0.00 0.00 0.00 2.29
2011 2048 8.995220 TCTTATAAAACAAGTAAACAGCACGAT 58.005 29.630 0.00 0.00 0.00 3.73
2012 2049 8.367943 TCTTATAAAACAAGTAAACAGCACGA 57.632 30.769 0.00 0.00 0.00 4.35
2013 2050 8.280497 ACTCTTATAAAACAAGTAAACAGCACG 58.720 33.333 0.00 0.00 0.00 5.34
2014 2051 9.946165 AACTCTTATAAAACAAGTAAACAGCAC 57.054 29.630 0.00 0.00 0.00 4.40
2031 2068 9.682465 TGCTCTAGTTTCTGACTAACTCTTATA 57.318 33.333 0.00 0.00 40.25 0.98
2032 2069 8.582657 TGCTCTAGTTTCTGACTAACTCTTAT 57.417 34.615 0.00 0.00 40.25 1.73
2033 2070 7.997773 TGCTCTAGTTTCTGACTAACTCTTA 57.002 36.000 0.00 0.00 40.25 2.10
2034 2071 6.902771 TGCTCTAGTTTCTGACTAACTCTT 57.097 37.500 0.00 0.00 40.25 2.85
2035 2072 6.492087 ACTTGCTCTAGTTTCTGACTAACTCT 59.508 38.462 0.00 0.00 40.25 3.24
2036 2073 6.683715 ACTTGCTCTAGTTTCTGACTAACTC 58.316 40.000 0.00 0.00 40.25 3.01
2037 2074 6.658188 ACTTGCTCTAGTTTCTGACTAACT 57.342 37.500 0.89 0.89 40.25 2.24
2038 2075 7.716768 AAACTTGCTCTAGTTTCTGACTAAC 57.283 36.000 4.13 0.00 43.04 2.34
2039 2076 7.985184 TCAAAACTTGCTCTAGTTTCTGACTAA 59.015 33.333 9.23 0.00 45.13 2.24
2040 2077 7.497595 TCAAAACTTGCTCTAGTTTCTGACTA 58.502 34.615 9.23 0.00 45.13 2.59
2041 2078 6.349300 TCAAAACTTGCTCTAGTTTCTGACT 58.651 36.000 9.23 0.00 45.13 3.41
2042 2079 6.604735 TCAAAACTTGCTCTAGTTTCTGAC 57.395 37.500 9.23 0.00 45.13 3.51
2043 2080 7.624360 TTTCAAAACTTGCTCTAGTTTCTGA 57.376 32.000 9.23 11.17 45.13 3.27
2044 2081 8.687824 TTTTTCAAAACTTGCTCTAGTTTCTG 57.312 30.769 9.23 9.65 45.13 3.02
2120 2157 8.878769 GCGGTTAATCAATTTTTGAAATGGTAT 58.121 29.630 0.00 0.00 43.95 2.73
2121 2158 7.062371 CGCGGTTAATCAATTTTTGAAATGGTA 59.938 33.333 0.00 0.00 43.95 3.25
2122 2159 6.128688 CGCGGTTAATCAATTTTTGAAATGGT 60.129 34.615 0.00 0.00 43.95 3.55
2123 2160 6.128688 ACGCGGTTAATCAATTTTTGAAATGG 60.129 34.615 12.47 0.00 43.95 3.16
2124 2161 6.816377 ACGCGGTTAATCAATTTTTGAAATG 58.184 32.000 12.47 0.00 43.95 2.32
2125 2162 8.696410 ATACGCGGTTAATCAATTTTTGAAAT 57.304 26.923 12.47 0.00 43.95 2.17
2126 2163 8.522178 AATACGCGGTTAATCAATTTTTGAAA 57.478 26.923 12.47 0.00 43.95 2.69
2127 2164 8.428536 CAAATACGCGGTTAATCAATTTTTGAA 58.571 29.630 12.47 0.00 43.95 2.69
2128 2165 7.808381 TCAAATACGCGGTTAATCAATTTTTGA 59.192 29.630 12.47 6.58 45.01 2.69
2129 2166 7.943952 TCAAATACGCGGTTAATCAATTTTTG 58.056 30.769 12.47 4.25 0.00 2.44
2130 2167 8.522178 TTCAAATACGCGGTTAATCAATTTTT 57.478 26.923 12.47 0.00 0.00 1.94
2131 2168 8.696410 ATTCAAATACGCGGTTAATCAATTTT 57.304 26.923 12.47 0.00 0.00 1.82
2132 2169 9.790389 TTATTCAAATACGCGGTTAATCAATTT 57.210 25.926 12.47 0.50 0.00 1.82
2133 2170 9.959749 ATTATTCAAATACGCGGTTAATCAATT 57.040 25.926 12.47 0.00 0.00 2.32
2135 2172 9.866936 GTATTATTCAAATACGCGGTTAATCAA 57.133 29.630 12.47 0.00 0.00 2.57
2136 2173 8.497554 GGTATTATTCAAATACGCGGTTAATCA 58.502 33.333 12.47 0.00 34.73 2.57
2137 2174 8.715088 AGGTATTATTCAAATACGCGGTTAATC 58.285 33.333 12.47 0.00 34.73 1.75
2138 2175 8.611654 AGGTATTATTCAAATACGCGGTTAAT 57.388 30.769 12.47 5.51 34.73 1.40
2139 2176 9.539825 TTAGGTATTATTCAAATACGCGGTTAA 57.460 29.630 12.47 0.00 34.73 2.01
2140 2177 8.977505 GTTAGGTATTATTCAAATACGCGGTTA 58.022 33.333 12.47 0.00 34.73 2.85
2141 2178 7.041848 GGTTAGGTATTATTCAAATACGCGGTT 60.042 37.037 12.47 1.31 34.73 4.44
2142 2179 6.424812 GGTTAGGTATTATTCAAATACGCGGT 59.575 38.462 12.47 0.00 34.73 5.68
2143 2180 6.647895 AGGTTAGGTATTATTCAAATACGCGG 59.352 38.462 12.47 0.00 34.73 6.46
2144 2181 7.170320 ACAGGTTAGGTATTATTCAAATACGCG 59.830 37.037 3.53 3.53 34.73 6.01
2145 2182 8.374327 ACAGGTTAGGTATTATTCAAATACGC 57.626 34.615 2.72 0.00 34.73 4.42
2160 2197 9.582648 AAACACTATTTTGAATACAGGTTAGGT 57.417 29.630 0.00 0.00 0.00 3.08
2161 2198 9.840427 CAAACACTATTTTGAATACAGGTTAGG 57.160 33.333 0.00 0.00 38.54 2.69
2162 2199 9.840427 CCAAACACTATTTTGAATACAGGTTAG 57.160 33.333 0.00 0.00 38.54 2.34
2163 2200 9.575868 TCCAAACACTATTTTGAATACAGGTTA 57.424 29.630 0.00 0.00 38.54 2.85
2164 2201 8.472007 TCCAAACACTATTTTGAATACAGGTT 57.528 30.769 0.00 0.00 38.54 3.50
2165 2202 8.472007 TTCCAAACACTATTTTGAATACAGGT 57.528 30.769 0.00 0.00 38.54 4.00
2166 2203 9.927668 ATTTCCAAACACTATTTTGAATACAGG 57.072 29.630 0.00 0.00 38.54 4.00
2221 2258 5.798015 TTGCGTCTGTACTGTGTTAAAAA 57.202 34.783 0.00 0.00 0.00 1.94
2222 2259 5.561993 GTTTGCGTCTGTACTGTGTTAAAA 58.438 37.500 0.00 0.00 0.00 1.52
2223 2260 4.259890 CGTTTGCGTCTGTACTGTGTTAAA 60.260 41.667 0.00 0.00 0.00 1.52
2224 2261 3.243410 CGTTTGCGTCTGTACTGTGTTAA 59.757 43.478 0.00 0.00 0.00 2.01
2225 2262 2.790448 CGTTTGCGTCTGTACTGTGTTA 59.210 45.455 0.00 0.00 0.00 2.41
2226 2263 1.591158 CGTTTGCGTCTGTACTGTGTT 59.409 47.619 0.00 0.00 0.00 3.32
2227 2264 1.205657 CGTTTGCGTCTGTACTGTGT 58.794 50.000 0.00 0.00 0.00 3.72
2228 2265 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.000 0.00 0.00 40.81 3.66
2229 2266 2.222592 GCGTTTGCGTCTGTACTGT 58.777 52.632 0.00 0.00 40.81 3.55
2240 2277 2.845764 GCACGTGTATATGAGCGTTTGC 60.846 50.000 18.38 0.00 43.24 3.68
2241 2278 2.347150 TGCACGTGTATATGAGCGTTTG 59.653 45.455 18.38 0.00 35.25 2.93
2242 2279 2.612604 TGCACGTGTATATGAGCGTTT 58.387 42.857 18.38 0.00 35.25 3.60
2243 2280 2.287393 TGCACGTGTATATGAGCGTT 57.713 45.000 18.38 0.00 35.25 4.84
2244 2281 2.509052 ATGCACGTGTATATGAGCGT 57.491 45.000 18.03 0.00 38.14 5.07
2245 2282 3.305110 TGTATGCACGTGTATATGAGCG 58.695 45.455 25.81 0.00 32.85 5.03
2246 2283 5.405269 TGATTGTATGCACGTGTATATGAGC 59.595 40.000 25.81 19.83 0.00 4.26
2247 2284 7.201470 GGATGATTGTATGCACGTGTATATGAG 60.201 40.741 25.81 0.00 0.00 2.90
2248 2285 6.589907 GGATGATTGTATGCACGTGTATATGA 59.410 38.462 25.81 18.23 0.00 2.15
2249 2286 6.591448 AGGATGATTGTATGCACGTGTATATG 59.409 38.462 25.81 0.00 0.00 1.78
2250 2287 6.701340 AGGATGATTGTATGCACGTGTATAT 58.299 36.000 25.81 13.79 0.00 0.86
2251 2288 6.096673 AGGATGATTGTATGCACGTGTATA 57.903 37.500 20.58 20.58 0.00 1.47
2252 2289 4.960938 AGGATGATTGTATGCACGTGTAT 58.039 39.130 22.72 22.72 0.00 2.29
2253 2290 4.400529 AGGATGATTGTATGCACGTGTA 57.599 40.909 18.38 14.09 0.00 2.90
2254 2291 3.266510 AGGATGATTGTATGCACGTGT 57.733 42.857 18.38 0.00 0.00 4.49
2255 2292 5.466393 TCATAAGGATGATTGTATGCACGTG 59.534 40.000 12.28 12.28 37.15 4.49
2256 2293 5.610398 TCATAAGGATGATTGTATGCACGT 58.390 37.500 0.00 0.00 37.15 4.49
2257 2294 6.365839 GTTCATAAGGATGATTGTATGCACG 58.634 40.000 0.00 0.00 41.77 5.34
2258 2295 6.365839 CGTTCATAAGGATGATTGTATGCAC 58.634 40.000 0.00 0.00 41.77 4.57
2259 2296 5.049474 GCGTTCATAAGGATGATTGTATGCA 60.049 40.000 0.00 0.00 41.77 3.96
2260 2297 5.049474 TGCGTTCATAAGGATGATTGTATGC 60.049 40.000 0.00 0.00 41.77 3.14
2261 2298 6.018016 TGTGCGTTCATAAGGATGATTGTATG 60.018 38.462 0.00 0.00 41.77 2.39
2262 2299 6.017934 GTGTGCGTTCATAAGGATGATTGTAT 60.018 38.462 0.00 0.00 41.77 2.29
2263 2300 5.293324 GTGTGCGTTCATAAGGATGATTGTA 59.707 40.000 0.00 0.00 41.77 2.41
2264 2301 4.094887 GTGTGCGTTCATAAGGATGATTGT 59.905 41.667 0.00 0.00 41.77 2.71
2265 2302 4.094739 TGTGTGCGTTCATAAGGATGATTG 59.905 41.667 0.00 0.00 41.77 2.67
2266 2303 4.260985 TGTGTGCGTTCATAAGGATGATT 58.739 39.130 0.00 0.00 41.77 2.57
2267 2304 3.872696 TGTGTGCGTTCATAAGGATGAT 58.127 40.909 0.00 0.00 41.77 2.45
2268 2305 3.326836 TGTGTGCGTTCATAAGGATGA 57.673 42.857 0.00 0.00 40.45 2.92
2269 2306 3.789791 GCATGTGTGCGTTCATAAGGATG 60.790 47.826 0.00 0.00 42.28 3.51
2270 2307 2.355756 GCATGTGTGCGTTCATAAGGAT 59.644 45.455 0.00 0.00 42.28 3.24
2271 2308 1.737236 GCATGTGTGCGTTCATAAGGA 59.263 47.619 0.00 0.00 42.28 3.36
2272 2309 2.178474 GCATGTGTGCGTTCATAAGG 57.822 50.000 0.00 0.00 42.28 2.69
2283 2320 1.442769 GGGTAGAGTGTGCATGTGTG 58.557 55.000 0.00 0.00 0.00 3.82
2284 2321 0.324943 GGGGTAGAGTGTGCATGTGT 59.675 55.000 0.00 0.00 0.00 3.72
2285 2322 0.615331 AGGGGTAGAGTGTGCATGTG 59.385 55.000 0.00 0.00 0.00 3.21
2286 2323 1.831736 GTAGGGGTAGAGTGTGCATGT 59.168 52.381 0.00 0.00 0.00 3.21
2287 2324 1.202417 CGTAGGGGTAGAGTGTGCATG 60.202 57.143 0.00 0.00 0.00 4.06
2288 2325 1.112113 CGTAGGGGTAGAGTGTGCAT 58.888 55.000 0.00 0.00 0.00 3.96
2289 2326 0.038599 TCGTAGGGGTAGAGTGTGCA 59.961 55.000 0.00 0.00 0.00 4.57
2290 2327 0.739561 CTCGTAGGGGTAGAGTGTGC 59.260 60.000 0.00 0.00 0.00 4.57
2291 2328 0.739561 GCTCGTAGGGGTAGAGTGTG 59.260 60.000 0.00 0.00 34.69 3.82
2292 2329 0.330604 TGCTCGTAGGGGTAGAGTGT 59.669 55.000 0.00 0.00 34.69 3.55
2293 2330 0.739561 GTGCTCGTAGGGGTAGAGTG 59.260 60.000 0.00 0.00 34.69 3.51
2294 2331 0.395448 GGTGCTCGTAGGGGTAGAGT 60.395 60.000 0.00 0.00 34.69 3.24
2295 2332 0.106619 AGGTGCTCGTAGGGGTAGAG 60.107 60.000 0.00 0.00 35.28 2.43
2296 2333 0.106819 GAGGTGCTCGTAGGGGTAGA 60.107 60.000 0.00 0.00 0.00 2.59
2297 2334 1.108132 GGAGGTGCTCGTAGGGGTAG 61.108 65.000 0.00 0.00 0.00 3.18
2298 2335 1.076485 GGAGGTGCTCGTAGGGGTA 60.076 63.158 0.00 0.00 0.00 3.69
2299 2336 2.363925 GGAGGTGCTCGTAGGGGT 60.364 66.667 0.00 0.00 0.00 4.95
2300 2337 3.528370 CGGAGGTGCTCGTAGGGG 61.528 72.222 0.00 0.00 0.00 4.79
2301 2338 1.601419 TTTCGGAGGTGCTCGTAGGG 61.601 60.000 0.00 0.00 0.00 3.53
2302 2339 0.245539 TTTTCGGAGGTGCTCGTAGG 59.754 55.000 0.00 0.00 0.00 3.18
2303 2340 1.725164 GTTTTTCGGAGGTGCTCGTAG 59.275 52.381 0.00 0.00 0.00 3.51
2304 2341 1.342174 AGTTTTTCGGAGGTGCTCGTA 59.658 47.619 0.00 0.00 0.00 3.43
2305 2342 0.106149 AGTTTTTCGGAGGTGCTCGT 59.894 50.000 0.00 0.00 0.00 4.18
2306 2343 0.512952 CAGTTTTTCGGAGGTGCTCG 59.487 55.000 0.00 0.00 0.00 5.03
2307 2344 1.801178 CTCAGTTTTTCGGAGGTGCTC 59.199 52.381 0.00 0.00 35.32 4.26
2308 2345 1.884235 CTCAGTTTTTCGGAGGTGCT 58.116 50.000 0.00 0.00 35.32 4.40
2309 2346 0.238553 GCTCAGTTTTTCGGAGGTGC 59.761 55.000 0.00 0.00 38.48 5.01
2310 2347 0.875059 GGCTCAGTTTTTCGGAGGTG 59.125 55.000 0.00 0.00 38.48 4.00
2311 2348 0.602905 CGGCTCAGTTTTTCGGAGGT 60.603 55.000 0.00 0.00 38.48 3.85
2312 2349 1.298859 CCGGCTCAGTTTTTCGGAGG 61.299 60.000 0.00 0.00 42.94 4.30
2313 2350 1.912371 GCCGGCTCAGTTTTTCGGAG 61.912 60.000 22.15 0.00 42.94 4.63
2314 2351 1.964373 GCCGGCTCAGTTTTTCGGA 60.964 57.895 22.15 0.00 42.94 4.55
2315 2352 1.586154 ATGCCGGCTCAGTTTTTCGG 61.586 55.000 29.70 0.00 43.13 4.30
2316 2353 1.083489 TATGCCGGCTCAGTTTTTCG 58.917 50.000 29.70 0.00 0.00 3.46
2317 2354 2.682856 TGATATGCCGGCTCAGTTTTTC 59.317 45.455 29.70 12.91 0.00 2.29
2318 2355 2.722094 TGATATGCCGGCTCAGTTTTT 58.278 42.857 29.70 3.35 0.00 1.94
2319 2356 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
2320 2357 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
2321 2358 1.696336 AGATGATATGCCGGCTCAGTT 59.304 47.619 29.70 9.04 0.00 3.16
2322 2359 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
2323 2360 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
2324 2361 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
2325 2362 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
2326 2363 2.498167 GTTCAAGATGATATGCCGGCT 58.502 47.619 29.70 15.76 0.00 5.52
2327 2364 1.537202 GGTTCAAGATGATATGCCGGC 59.463 52.381 22.73 22.73 0.00 6.13
2328 2365 2.154462 GGGTTCAAGATGATATGCCGG 58.846 52.381 0.00 0.00 0.00 6.13
2329 2366 2.810274 CAGGGTTCAAGATGATATGCCG 59.190 50.000 0.00 0.00 0.00 5.69
2330 2367 3.152341 CCAGGGTTCAAGATGATATGCC 58.848 50.000 0.00 0.00 0.00 4.40
2331 2368 3.567164 CACCAGGGTTCAAGATGATATGC 59.433 47.826 0.00 0.00 0.00 3.14
2332 2369 4.139786 CCACCAGGGTTCAAGATGATATG 58.860 47.826 0.00 0.00 0.00 1.78
2333 2370 4.443978 CCACCAGGGTTCAAGATGATAT 57.556 45.455 0.00 0.00 0.00 1.63
2334 2371 3.931907 CCACCAGGGTTCAAGATGATA 57.068 47.619 0.00 0.00 0.00 2.15
2335 2372 2.814805 CCACCAGGGTTCAAGATGAT 57.185 50.000 0.00 0.00 0.00 2.45
2347 2384 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
2348 2385 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
2349 2386 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
2350 2387 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
2366 2403 7.889589 TCAGTTATATGCGAACCAATCTATG 57.110 36.000 0.00 0.00 0.00 2.23
2367 2404 8.902540 TTTCAGTTATATGCGAACCAATCTAT 57.097 30.769 0.00 0.00 0.00 1.98
2368 2405 8.725405 TTTTCAGTTATATGCGAACCAATCTA 57.275 30.769 0.00 0.00 0.00 1.98
2369 2406 7.624360 TTTTCAGTTATATGCGAACCAATCT 57.376 32.000 0.00 0.00 0.00 2.40
2370 2407 8.745837 CATTTTTCAGTTATATGCGAACCAATC 58.254 33.333 0.00 0.00 0.00 2.67
2371 2408 8.250332 ACATTTTTCAGTTATATGCGAACCAAT 58.750 29.630 0.00 0.00 0.00 3.16
2372 2409 7.598278 ACATTTTTCAGTTATATGCGAACCAA 58.402 30.769 0.00 0.00 0.00 3.67
2373 2410 7.151999 ACATTTTTCAGTTATATGCGAACCA 57.848 32.000 0.00 0.00 0.00 3.67
2374 2411 9.562583 TTTACATTTTTCAGTTATATGCGAACC 57.437 29.630 0.00 0.00 0.00 3.62
2376 2413 9.268255 CGTTTACATTTTTCAGTTATATGCGAA 57.732 29.630 0.00 0.00 0.00 4.70
2377 2414 8.657729 TCGTTTACATTTTTCAGTTATATGCGA 58.342 29.630 0.00 0.00 0.00 5.10
2378 2415 8.814733 TCGTTTACATTTTTCAGTTATATGCG 57.185 30.769 0.00 0.00 0.00 4.73
2456 2493 3.250040 AGCGCGTTTGATGTCTACTTTTT 59.750 39.130 8.43 0.00 0.00 1.94
2457 2494 2.806244 AGCGCGTTTGATGTCTACTTTT 59.194 40.909 8.43 0.00 0.00 2.27
2458 2495 2.157668 CAGCGCGTTTGATGTCTACTTT 59.842 45.455 8.43 0.00 0.00 2.66
2459 2496 1.726791 CAGCGCGTTTGATGTCTACTT 59.273 47.619 8.43 0.00 0.00 2.24
2460 2497 1.067846 TCAGCGCGTTTGATGTCTACT 60.068 47.619 8.43 0.00 0.00 2.57
2461 2498 1.059264 GTCAGCGCGTTTGATGTCTAC 59.941 52.381 16.35 2.53 0.00 2.59
2462 2499 1.067846 AGTCAGCGCGTTTGATGTCTA 60.068 47.619 16.35 0.00 0.00 2.59
2463 2500 0.319900 AGTCAGCGCGTTTGATGTCT 60.320 50.000 16.35 8.15 0.00 3.41
2464 2501 1.321743 CTAGTCAGCGCGTTTGATGTC 59.678 52.381 16.35 6.32 0.00 3.06
2465 2502 1.067846 TCTAGTCAGCGCGTTTGATGT 60.068 47.619 16.35 10.69 0.00 3.06
2466 2503 1.629013 TCTAGTCAGCGCGTTTGATG 58.371 50.000 16.35 10.93 0.00 3.07
2467 2504 2.363788 TTCTAGTCAGCGCGTTTGAT 57.636 45.000 16.35 9.55 0.00 2.57
2468 2505 1.790623 GTTTCTAGTCAGCGCGTTTGA 59.209 47.619 8.43 9.80 0.00 2.69
2469 2506 1.136336 GGTTTCTAGTCAGCGCGTTTG 60.136 52.381 8.43 7.24 0.00 2.93
2470 2507 1.145803 GGTTTCTAGTCAGCGCGTTT 58.854 50.000 8.43 0.00 0.00 3.60
2471 2508 1.007336 CGGTTTCTAGTCAGCGCGTT 61.007 55.000 8.43 0.00 0.00 4.84
2472 2509 1.443872 CGGTTTCTAGTCAGCGCGT 60.444 57.895 8.43 0.00 0.00 6.01
2473 2510 0.525668 ATCGGTTTCTAGTCAGCGCG 60.526 55.000 0.00 0.00 33.92 6.86
2474 2511 1.324736 CAATCGGTTTCTAGTCAGCGC 59.675 52.381 0.00 0.00 33.92 5.92
2475 2512 1.324736 GCAATCGGTTTCTAGTCAGCG 59.675 52.381 8.59 8.59 35.22 5.18
2476 2513 2.349886 CAGCAATCGGTTTCTAGTCAGC 59.650 50.000 0.00 0.00 0.00 4.26
2477 2514 3.849911 TCAGCAATCGGTTTCTAGTCAG 58.150 45.455 0.00 0.00 0.00 3.51
2478 2515 3.849911 CTCAGCAATCGGTTTCTAGTCA 58.150 45.455 0.00 0.00 0.00 3.41
2479 2516 2.605366 GCTCAGCAATCGGTTTCTAGTC 59.395 50.000 0.00 0.00 0.00 2.59
2480 2517 2.622436 GCTCAGCAATCGGTTTCTAGT 58.378 47.619 0.00 0.00 0.00 2.57
2481 2518 1.936547 GGCTCAGCAATCGGTTTCTAG 59.063 52.381 0.00 0.00 0.00 2.43
2482 2519 1.277842 TGGCTCAGCAATCGGTTTCTA 59.722 47.619 0.00 0.00 0.00 2.10
2483 2520 0.036732 TGGCTCAGCAATCGGTTTCT 59.963 50.000 0.00 0.00 0.00 2.52
2484 2521 0.449388 CTGGCTCAGCAATCGGTTTC 59.551 55.000 0.00 0.00 0.00 2.78
2485 2522 2.559785 CTGGCTCAGCAATCGGTTT 58.440 52.632 0.00 0.00 0.00 3.27
2486 2523 4.308526 CTGGCTCAGCAATCGGTT 57.691 55.556 0.00 0.00 0.00 4.44
2495 2532 3.207669 GCGAATGGGCTGGCTCAG 61.208 66.667 0.70 0.00 34.12 3.35
2496 2533 2.842188 ATTGCGAATGGGCTGGCTCA 62.842 55.000 0.00 0.00 0.00 4.26
2497 2534 0.819259 TATTGCGAATGGGCTGGCTC 60.819 55.000 0.00 0.00 0.00 4.70
2498 2535 0.178981 ATATTGCGAATGGGCTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
2499 2536 1.470098 CTATATTGCGAATGGGCTGGC 59.530 52.381 0.00 0.00 0.00 4.85
2500 2537 1.470098 GCTATATTGCGAATGGGCTGG 59.530 52.381 0.00 0.00 0.00 4.85
2501 2538 2.430465 AGCTATATTGCGAATGGGCTG 58.570 47.619 3.46 0.00 38.13 4.85
2502 2539 2.816087 CAAGCTATATTGCGAATGGGCT 59.184 45.455 3.46 0.00 38.13 5.19
2503 2540 2.813754 TCAAGCTATATTGCGAATGGGC 59.186 45.455 3.46 0.00 38.13 5.36
2504 2541 3.120060 GCTCAAGCTATATTGCGAATGGG 60.120 47.826 3.46 5.96 38.21 4.00
2505 2542 3.424039 CGCTCAAGCTATATTGCGAATGG 60.424 47.826 12.04 1.84 45.15 3.16
2506 2543 3.729684 CGCTCAAGCTATATTGCGAATG 58.270 45.455 12.04 5.19 45.15 2.67
2510 2547 3.859745 TTTCGCTCAAGCTATATTGCG 57.140 42.857 11.44 11.44 43.95 4.85
2511 2548 5.100751 ACATTTCGCTCAAGCTATATTGC 57.899 39.130 0.41 0.41 39.32 3.56
2515 2552 9.574458 GAGATAATACATTTCGCTCAAGCTATA 57.426 33.333 0.00 0.00 39.32 1.31
2516 2553 8.310382 AGAGATAATACATTTCGCTCAAGCTAT 58.690 33.333 0.00 0.00 39.32 2.97
2517 2554 7.661968 AGAGATAATACATTTCGCTCAAGCTA 58.338 34.615 0.00 0.00 39.32 3.32
2518 2555 6.520272 AGAGATAATACATTTCGCTCAAGCT 58.480 36.000 0.00 0.00 39.32 3.74
2519 2556 6.399459 CGAGAGATAATACATTTCGCTCAAGC 60.399 42.308 0.00 0.00 36.48 4.01
2520 2557 6.088749 CCGAGAGATAATACATTTCGCTCAAG 59.911 42.308 0.00 0.00 36.48 3.02
2521 2558 5.920840 CCGAGAGATAATACATTTCGCTCAA 59.079 40.000 0.00 0.00 36.48 3.02
2522 2559 5.009710 ACCGAGAGATAATACATTTCGCTCA 59.990 40.000 0.00 0.00 36.48 4.26
2523 2560 5.462405 ACCGAGAGATAATACATTTCGCTC 58.538 41.667 0.00 0.00 34.28 5.03
2524 2561 5.455056 ACCGAGAGATAATACATTTCGCT 57.545 39.130 0.00 0.00 0.00 4.93
2525 2562 5.800941 CCTACCGAGAGATAATACATTTCGC 59.199 44.000 0.00 0.00 0.00 4.70
2526 2563 6.323266 CCCTACCGAGAGATAATACATTTCG 58.677 44.000 0.00 0.00 0.00 3.46
2527 2564 6.631962 CCCCTACCGAGAGATAATACATTTC 58.368 44.000 0.00 0.00 0.00 2.17
2528 2565 5.046520 GCCCCTACCGAGAGATAATACATTT 60.047 44.000 0.00 0.00 0.00 2.32
2529 2566 4.466726 GCCCCTACCGAGAGATAATACATT 59.533 45.833 0.00 0.00 0.00 2.71
2530 2567 4.024670 GCCCCTACCGAGAGATAATACAT 58.975 47.826 0.00 0.00 0.00 2.29
2531 2568 3.428532 GCCCCTACCGAGAGATAATACA 58.571 50.000 0.00 0.00 0.00 2.29
2532 2569 2.422832 CGCCCCTACCGAGAGATAATAC 59.577 54.545 0.00 0.00 0.00 1.89
2533 2570 2.306805 TCGCCCCTACCGAGAGATAATA 59.693 50.000 0.00 0.00 0.00 0.98
2534 2571 1.075050 TCGCCCCTACCGAGAGATAAT 59.925 52.381 0.00 0.00 0.00 1.28
2535 2572 0.475475 TCGCCCCTACCGAGAGATAA 59.525 55.000 0.00 0.00 0.00 1.75
2536 2573 0.250640 GTCGCCCCTACCGAGAGATA 60.251 60.000 0.00 0.00 35.11 1.98
2537 2574 1.528776 GTCGCCCCTACCGAGAGAT 60.529 63.158 0.00 0.00 35.11 2.75
2538 2575 2.124403 GTCGCCCCTACCGAGAGA 60.124 66.667 0.00 0.00 35.11 3.10
2539 2576 2.439701 TGTCGCCCCTACCGAGAG 60.440 66.667 0.00 0.00 35.11 3.20
2540 2577 2.753043 GTGTCGCCCCTACCGAGA 60.753 66.667 0.00 0.00 35.11 4.04
2541 2578 1.105167 TATGTGTCGCCCCTACCGAG 61.105 60.000 0.00 0.00 35.11 4.63
2542 2579 1.076850 TATGTGTCGCCCCTACCGA 60.077 57.895 0.00 0.00 0.00 4.69
2543 2580 1.362717 CTATGTGTCGCCCCTACCG 59.637 63.158 0.00 0.00 0.00 4.02
2544 2581 1.069258 GCTATGTGTCGCCCCTACC 59.931 63.158 0.00 0.00 0.00 3.18
2545 2582 1.069258 GGCTATGTGTCGCCCCTAC 59.931 63.158 0.00 0.00 40.43 3.18
2546 2583 3.546009 GGCTATGTGTCGCCCCTA 58.454 61.111 0.00 0.00 40.43 3.53
2550 2587 2.279517 CGAGGGCTATGTGTCGCC 60.280 66.667 0.00 0.00 45.55 5.54
2551 2588 1.299468 CTCGAGGGCTATGTGTCGC 60.299 63.158 3.91 0.00 32.41 5.19
2552 2589 1.101635 TCCTCGAGGGCTATGTGTCG 61.102 60.000 30.80 0.89 35.41 4.35
2553 2590 0.671251 CTCCTCGAGGGCTATGTGTC 59.329 60.000 30.80 0.00 35.41 3.67
2554 2591 0.757188 CCTCCTCGAGGGCTATGTGT 60.757 60.000 30.80 0.00 45.43 3.72
2555 2592 2.045280 CCTCCTCGAGGGCTATGTG 58.955 63.158 30.80 11.96 45.43 3.21
2556 2593 4.609098 CCTCCTCGAGGGCTATGT 57.391 61.111 30.80 0.00 45.43 2.29
2564 2601 2.182030 GCGGAACACCTCCTCGAG 59.818 66.667 5.13 5.13 42.85 4.04
2574 2611 4.776322 CTGATGGGCCGCGGAACA 62.776 66.667 33.48 26.61 0.00 3.18
2579 2616 3.933722 ATCTCCTGATGGGCCGCG 61.934 66.667 0.00 0.00 34.39 6.46
2580 2617 2.281345 CATCTCCTGATGGGCCGC 60.281 66.667 0.00 0.00 44.63 6.53
2587 2624 0.179062 GCAGCGGAACATCTCCTGAT 60.179 55.000 0.00 0.00 42.85 2.90
2588 2625 1.219124 GCAGCGGAACATCTCCTGA 59.781 57.895 0.00 0.00 42.85 3.86
2589 2626 1.078918 TGCAGCGGAACATCTCCTG 60.079 57.895 0.00 0.00 42.85 3.86
2590 2627 1.078848 GTGCAGCGGAACATCTCCT 60.079 57.895 0.00 0.00 42.85 3.69
2591 2628 0.745845 ATGTGCAGCGGAACATCTCC 60.746 55.000 4.38 0.00 39.13 3.71
2592 2629 0.376152 CATGTGCAGCGGAACATCTC 59.624 55.000 7.59 0.00 41.58 2.75
2593 2630 1.651240 GCATGTGCAGCGGAACATCT 61.651 55.000 7.59 0.00 41.58 2.90
2594 2631 1.226491 GCATGTGCAGCGGAACATC 60.226 57.895 7.59 0.04 41.58 3.06
2595 2632 2.879907 GCATGTGCAGCGGAACAT 59.120 55.556 4.38 4.38 44.50 2.71
2602 2639 4.104776 ACATTTTTATACGCATGTGCAGC 58.895 39.130 6.08 0.00 42.21 5.25
2603 2640 5.229887 GGAACATTTTTATACGCATGTGCAG 59.770 40.000 6.08 1.02 42.21 4.41
2604 2641 5.098893 GGAACATTTTTATACGCATGTGCA 58.901 37.500 6.08 0.00 42.21 4.57
2605 2642 5.004345 GTGGAACATTTTTATACGCATGTGC 59.996 40.000 6.08 0.00 44.52 4.57
2606 2643 6.321717 AGTGGAACATTTTTATACGCATGTG 58.678 36.000 4.30 4.30 44.52 3.21
2607 2644 6.509418 AGTGGAACATTTTTATACGCATGT 57.491 33.333 0.00 0.00 44.52 3.21
2608 2645 7.468441 TGTAGTGGAACATTTTTATACGCATG 58.532 34.615 0.00 0.00 44.52 4.06
2609 2646 7.618502 TGTAGTGGAACATTTTTATACGCAT 57.381 32.000 0.00 0.00 44.52 4.73
2610 2647 7.618502 ATGTAGTGGAACATTTTTATACGCA 57.381 32.000 0.00 0.00 44.52 5.24
2735 2772 9.435688 GTGGCAATCCTTTTTAATAAGTTCATT 57.564 29.630 5.16 0.00 0.00 2.57
2736 2773 8.040727 GGTGGCAATCCTTTTTAATAAGTTCAT 58.959 33.333 5.16 0.00 0.00 2.57
2737 2774 7.382898 GGTGGCAATCCTTTTTAATAAGTTCA 58.617 34.615 5.16 0.00 0.00 3.18
2738 2775 6.816640 GGGTGGCAATCCTTTTTAATAAGTTC 59.183 38.462 5.16 0.00 0.00 3.01
2739 2776 6.500400 AGGGTGGCAATCCTTTTTAATAAGTT 59.500 34.615 4.97 0.00 0.00 2.66
2740 2777 6.022958 AGGGTGGCAATCCTTTTTAATAAGT 58.977 36.000 4.97 0.00 0.00 2.24
2741 2778 6.544928 AGGGTGGCAATCCTTTTTAATAAG 57.455 37.500 4.97 0.00 0.00 1.73
2742 2779 6.943899 AAGGGTGGCAATCCTTTTTAATAA 57.056 33.333 15.18 0.00 40.17 1.40
2750 2787 8.797436 AAATATATTAAAGGGTGGCAATCCTT 57.203 30.769 15.18 15.18 44.53 3.36
2751 2788 8.010105 TGAAATATATTAAAGGGTGGCAATCCT 58.990 33.333 4.97 4.97 34.29 3.24
2752 2789 8.189119 TGAAATATATTAAAGGGTGGCAATCC 57.811 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.