Multiple sequence alignment - TraesCS3D01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G317900 chr3D 100.000 4087 0 0 1 4087 431842631 431838545 0.000000e+00 7548.0
1 TraesCS3D01G317900 chr3D 82.979 282 35 10 239 510 333718195 333717917 4.080000e-60 243.0
2 TraesCS3D01G317900 chr3A 89.289 3249 163 76 344 3503 569238759 569235607 0.000000e+00 3901.0
3 TraesCS3D01G317900 chr3A 88.156 591 33 12 3515 4087 569235558 569234987 0.000000e+00 669.0
4 TraesCS3D01G317900 chr3A 85.185 243 16 2 1 223 569239020 569238778 8.830000e-57 231.0
5 TraesCS3D01G317900 chr3A 87.013 154 14 2 40 187 605901 605748 7.030000e-38 169.0
6 TraesCS3D01G317900 chr3B 91.753 2595 103 47 805 3316 564045840 564043274 0.000000e+00 3504.0
7 TraesCS3D01G317900 chr3B 85.811 444 28 7 2375 2818 85351813 85351405 4.850000e-119 438.0
8 TraesCS3D01G317900 chr3B 79.828 580 50 26 3515 4087 564043067 564042548 1.080000e-95 361.0
9 TraesCS3D01G317900 chr3B 97.561 164 4 0 536 699 564046132 564045969 8.650000e-72 281.0
10 TraesCS3D01G317900 chr3B 81.090 312 25 15 1801 2107 59466744 59466462 6.880000e-53 219.0
11 TraesCS3D01G317900 chr3B 89.189 148 14 2 40 185 29755253 29755400 2.510000e-42 183.0
12 TraesCS3D01G317900 chr3B 86.127 173 16 2 2113 2284 85352206 85352041 3.250000e-41 180.0
13 TraesCS3D01G317900 chr3B 86.567 134 7 5 3380 3503 564043249 564043117 1.980000e-28 137.0
14 TraesCS3D01G317900 chr3B 90.909 99 8 1 1308 1405 85352486 85352388 9.220000e-27 132.0
15 TraesCS3D01G317900 chr3B 78.922 204 27 8 1861 2063 85352394 85352206 1.540000e-24 124.0
16 TraesCS3D01G317900 chr2D 91.760 267 17 4 238 500 535240031 535240296 2.320000e-97 366.0
17 TraesCS3D01G317900 chr2D 91.011 267 18 5 234 496 368526795 368527059 5.020000e-94 355.0
18 TraesCS3D01G317900 chr2D 89.850 266 22 5 239 500 8321292 8321028 1.820000e-88 337.0
19 TraesCS3D01G317900 chr2D 86.806 144 17 2 46 187 148970216 148970073 4.230000e-35 159.0
20 TraesCS3D01G317900 chr6D 91.667 264 16 5 239 498 444471233 444470972 1.080000e-95 361.0
21 TraesCS3D01G317900 chr6D 85.816 282 34 6 238 515 25991704 25991425 1.110000e-75 294.0
22 TraesCS3D01G317900 chr6D 85.443 158 16 4 46 196 6159620 6159463 1.520000e-34 158.0
23 TraesCS3D01G317900 chr5A 91.221 262 18 4 239 496 281122095 281122355 6.500000e-93 351.0
24 TraesCS3D01G317900 chrUn 90.566 265 19 6 239 499 29715035 29714773 3.020000e-91 346.0
25 TraesCS3D01G317900 chr2A 90.840 262 19 4 239 496 578489077 578488817 3.020000e-91 346.0
26 TraesCS3D01G317900 chr7B 89.130 276 22 7 225 496 25891094 25891365 1.820000e-88 337.0
27 TraesCS3D01G317900 chr1B 89.259 270 24 5 239 504 52005049 52004781 2.350000e-87 333.0
28 TraesCS3D01G317900 chr1B 83.755 277 37 8 239 510 324473706 324473433 5.240000e-64 255.0
29 TraesCS3D01G317900 chr1B 88.312 154 13 5 38 187 174407688 174407536 3.250000e-41 180.0
30 TraesCS3D01G317900 chr7A 84.342 281 37 7 239 515 373053879 373054156 6.730000e-68 268.0
31 TraesCS3D01G317900 chr7A 83.986 281 33 11 239 510 422387832 422387555 4.050000e-65 259.0
32 TraesCS3D01G317900 chr7A 87.413 143 16 2 47 187 357695232 357695090 3.270000e-36 163.0
33 TraesCS3D01G317900 chr1D 83.557 298 37 12 239 530 337627208 337626917 6.730000e-68 268.0
34 TraesCS3D01G317900 chr4A 83.451 284 34 10 239 512 185669756 185670036 6.780000e-63 252.0
35 TraesCS3D01G317900 chr4A 82.867 286 38 10 239 516 261083231 261082949 3.160000e-61 246.0
36 TraesCS3D01G317900 chr4A 83.094 278 37 10 239 510 384710700 384710427 1.130000e-60 244.0
37 TraesCS3D01G317900 chr4A 91.379 116 7 1 1112 1227 576565706 576565818 5.470000e-34 156.0
38 TraesCS3D01G317900 chr4A 85.542 83 11 1 2501 2582 502902914 502902832 7.280000e-13 86.1
39 TraesCS3D01G317900 chr4D 91.304 138 10 2 1264 1401 26926516 26926381 1.940000e-43 187.0
40 TraesCS3D01G317900 chr4D 85.612 139 11 3 1089 1224 26926647 26926515 1.980000e-28 137.0
41 TraesCS3D01G317900 chr4D 85.542 83 11 1 2501 2582 90989970 90989888 7.280000e-13 86.1
42 TraesCS3D01G317900 chr1A 88.079 151 14 4 37 184 500050814 500050963 4.200000e-40 176.0
43 TraesCS3D01G317900 chr5B 87.417 151 15 4 38 185 439612503 439612354 1.950000e-38 171.0
44 TraesCS3D01G317900 chr4B 87.770 139 8 3 1089 1227 39302643 39302514 1.970000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G317900 chr3D 431838545 431842631 4086 True 7548.000000 7548 100.000000 1 4087 1 chr3D.!!$R2 4086
1 TraesCS3D01G317900 chr3A 569234987 569239020 4033 True 1600.333333 3901 87.543333 1 4087 3 chr3A.!!$R2 4086
2 TraesCS3D01G317900 chr3B 564042548 564046132 3584 True 1070.750000 3504 88.927250 536 4087 4 chr3B.!!$R3 3551
3 TraesCS3D01G317900 chr3B 85351405 85352486 1081 True 218.500000 438 85.442250 1308 2818 4 chr3B.!!$R2 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 690 0.039911 CCCCCGTCCCCATTTACAAA 59.960 55.0 0.00 0.0 0.0 2.83 F
787 841 0.324614 CCATAGACTGCACCACACCA 59.675 55.0 0.00 0.0 0.0 4.17 F
1840 1953 0.463204 AGGTGAGGATGACATCTGCG 59.537 55.0 14.95 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2257 0.742990 TGGATTGGCGTAAAGAGCGG 60.743 55.000 0.00 0.0 35.00 5.52 R
2366 2659 1.771854 ACTGACACACACCCACCATTA 59.228 47.619 0.00 0.0 0.00 1.90 R
3336 3678 0.321564 ACGCATGCAAAGTGCTCCTA 60.322 50.000 19.57 0.0 45.31 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.205064 GCATACGCGCATAAGGCTG 59.795 57.895 5.73 0.00 41.67 4.85
45 46 1.862123 CATACGCGCATAAGGCTGG 59.138 57.895 5.73 0.00 41.67 4.85
81 82 8.434733 AGTATCATAGTTGATATCATGCATGC 57.565 34.615 22.25 11.82 44.53 4.06
87 88 5.379187 AGTTGATATCATGCATGCCAACTA 58.621 37.500 31.36 16.26 40.32 2.24
107 108 5.513233 ACTAGGCAATTTTGATGAGGTGAT 58.487 37.500 0.00 0.00 0.00 3.06
175 196 8.421002 TGTTATACTACTATGTGTCATGCATGT 58.579 33.333 25.43 9.20 0.00 3.21
176 197 8.916654 GTTATACTACTATGTGTCATGCATGTC 58.083 37.037 25.43 20.50 0.00 3.06
184 205 9.341078 ACTATGTGTCATGCATGTCAATAAATA 57.659 29.630 24.86 18.06 0.00 1.40
223 244 7.776030 CACTGGGGAGGTAGTATCATATACTAG 59.224 44.444 6.97 0.00 31.41 2.57
224 245 7.687661 ACTGGGGAGGTAGTATCATATACTAGA 59.312 40.741 6.97 0.00 31.41 2.43
225 246 8.654751 TGGGGAGGTAGTATCATATACTAGAT 57.345 38.462 6.97 0.49 31.41 1.98
244 265 7.610865 ACTAGATACTAGTGTACGATACTCCC 58.389 42.308 5.39 0.00 0.00 4.30
245 266 6.684897 AGATACTAGTGTACGATACTCCCT 57.315 41.667 5.39 0.00 0.00 4.20
246 267 6.700352 AGATACTAGTGTACGATACTCCCTC 58.300 44.000 5.39 0.00 0.00 4.30
247 268 4.084011 ACTAGTGTACGATACTCCCTCC 57.916 50.000 0.00 0.00 0.00 4.30
248 269 1.964552 AGTGTACGATACTCCCTCCG 58.035 55.000 0.00 0.00 0.00 4.63
249 270 1.211457 AGTGTACGATACTCCCTCCGT 59.789 52.381 0.00 0.00 38.82 4.69
250 271 2.019984 GTGTACGATACTCCCTCCGTT 58.980 52.381 0.00 0.00 36.58 4.44
251 272 2.424956 GTGTACGATACTCCCTCCGTTT 59.575 50.000 0.00 0.00 36.58 3.60
252 273 3.091545 TGTACGATACTCCCTCCGTTTT 58.908 45.455 0.00 0.00 36.58 2.43
253 274 3.511146 TGTACGATACTCCCTCCGTTTTT 59.489 43.478 0.00 0.00 36.58 1.94
254 275 4.704540 TGTACGATACTCCCTCCGTTTTTA 59.295 41.667 0.00 0.00 36.58 1.52
255 276 5.360714 TGTACGATACTCCCTCCGTTTTTAT 59.639 40.000 0.00 0.00 36.58 1.40
256 277 5.349061 ACGATACTCCCTCCGTTTTTATT 57.651 39.130 0.00 0.00 30.41 1.40
257 278 5.737860 ACGATACTCCCTCCGTTTTTATTT 58.262 37.500 0.00 0.00 30.41 1.40
258 279 6.877236 ACGATACTCCCTCCGTTTTTATTTA 58.123 36.000 0.00 0.00 30.41 1.40
259 280 6.758416 ACGATACTCCCTCCGTTTTTATTTAC 59.242 38.462 0.00 0.00 30.41 2.01
260 281 6.982724 CGATACTCCCTCCGTTTTTATTTACT 59.017 38.462 0.00 0.00 0.00 2.24
261 282 7.168804 CGATACTCCCTCCGTTTTTATTTACTC 59.831 40.741 0.00 0.00 0.00 2.59
262 283 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
263 284 4.847198 TCCCTCCGTTTTTATTTACTCCC 58.153 43.478 0.00 0.00 0.00 4.30
264 285 3.949754 CCCTCCGTTTTTATTTACTCCCC 59.050 47.826 0.00 0.00 0.00 4.81
265 286 4.324797 CCCTCCGTTTTTATTTACTCCCCT 60.325 45.833 0.00 0.00 0.00 4.79
266 287 5.104402 CCCTCCGTTTTTATTTACTCCCCTA 60.104 44.000 0.00 0.00 0.00 3.53
267 288 6.410041 CCCTCCGTTTTTATTTACTCCCCTAT 60.410 42.308 0.00 0.00 0.00 2.57
268 289 7.058525 CCTCCGTTTTTATTTACTCCCCTATT 58.941 38.462 0.00 0.00 0.00 1.73
269 290 8.212995 CCTCCGTTTTTATTTACTCCCCTATTA 58.787 37.037 0.00 0.00 0.00 0.98
270 291 9.617523 CTCCGTTTTTATTTACTCCCCTATTAA 57.382 33.333 0.00 0.00 0.00 1.40
271 292 9.972106 TCCGTTTTTATTTACTCCCCTATTAAA 57.028 29.630 0.00 0.00 0.00 1.52
280 301 9.777008 ATTTACTCCCCTATTAAATTTGGTCAA 57.223 29.630 0.00 0.00 0.00 3.18
281 302 9.603189 TTTACTCCCCTATTAAATTTGGTCAAA 57.397 29.630 0.00 0.00 34.46 2.69
282 303 7.718334 ACTCCCCTATTAAATTTGGTCAAAG 57.282 36.000 0.00 0.00 33.32 2.77
283 304 7.246027 ACTCCCCTATTAAATTTGGTCAAAGT 58.754 34.615 0.00 0.00 33.32 2.66
284 305 7.396339 ACTCCCCTATTAAATTTGGTCAAAGTC 59.604 37.037 0.00 0.00 33.32 3.01
285 306 7.242359 TCCCCTATTAAATTTGGTCAAAGTCA 58.758 34.615 0.00 0.00 33.32 3.41
286 307 7.730784 TCCCCTATTAAATTTGGTCAAAGTCAA 59.269 33.333 0.00 0.00 33.32 3.18
287 308 8.034804 CCCCTATTAAATTTGGTCAAAGTCAAG 58.965 37.037 0.00 0.00 33.32 3.02
288 309 7.545615 CCCTATTAAATTTGGTCAAAGTCAAGC 59.454 37.037 0.00 0.00 33.32 4.01
289 310 8.306761 CCTATTAAATTTGGTCAAAGTCAAGCT 58.693 33.333 0.00 0.00 33.32 3.74
290 311 9.696917 CTATTAAATTTGGTCAAAGTCAAGCTT 57.303 29.630 0.00 0.00 39.52 3.74
297 318 8.865590 TTTGGTCAAAGTCAAGCTTTATAAAC 57.134 30.769 0.00 0.00 44.95 2.01
298 319 7.817418 TGGTCAAAGTCAAGCTTTATAAACT 57.183 32.000 0.00 0.00 44.95 2.66
299 320 8.232913 TGGTCAAAGTCAAGCTTTATAAACTT 57.767 30.769 0.00 0.00 44.95 2.66
300 321 8.691797 TGGTCAAAGTCAAGCTTTATAAACTTT 58.308 29.630 0.00 5.64 44.95 2.66
302 323 9.516314 GTCAAAGTCAAGCTTTATAAACTTTGT 57.484 29.630 26.76 9.13 46.80 2.83
303 324 9.730420 TCAAAGTCAAGCTTTATAAACTTTGTC 57.270 29.630 26.76 15.59 46.80 3.18
304 325 9.515020 CAAAGTCAAGCTTTATAAACTTTGTCA 57.485 29.630 23.61 3.71 44.95 3.58
307 328 9.736023 AGTCAAGCTTTATAAACTTTGTCAAAG 57.264 29.630 21.34 21.34 44.10 2.77
472 495 8.798859 AACTTCAGTCAAACTCTAATATGCAT 57.201 30.769 3.79 3.79 0.00 3.96
474 497 9.539825 ACTTCAGTCAAACTCTAATATGCATAG 57.460 33.333 12.79 2.06 0.00 2.23
512 538 4.573201 GGGAGTAATACGCATTACAAGCAA 59.427 41.667 18.42 0.00 46.08 3.91
514 540 5.293569 GGAGTAATACGCATTACAAGCAACT 59.706 40.000 18.42 0.03 46.08 3.16
515 541 6.345920 AGTAATACGCATTACAAGCAACTC 57.654 37.500 18.42 0.00 46.08 3.01
516 542 6.106673 AGTAATACGCATTACAAGCAACTCT 58.893 36.000 18.42 0.00 46.08 3.24
517 543 7.262772 AGTAATACGCATTACAAGCAACTCTA 58.737 34.615 18.42 0.00 46.08 2.43
518 544 6.978343 AATACGCATTACAAGCAACTCTAA 57.022 33.333 0.00 0.00 0.00 2.10
519 545 7.553881 AATACGCATTACAAGCAACTCTAAT 57.446 32.000 0.00 0.00 0.00 1.73
520 546 8.657074 AATACGCATTACAAGCAACTCTAATA 57.343 30.769 0.00 0.00 0.00 0.98
521 547 8.833231 ATACGCATTACAAGCAACTCTAATAT 57.167 30.769 0.00 0.00 0.00 1.28
522 548 6.948353 ACGCATTACAAGCAACTCTAATATG 58.052 36.000 0.00 0.00 0.00 1.78
523 549 5.848036 CGCATTACAAGCAACTCTAATATGC 59.152 40.000 0.00 0.00 40.34 3.14
524 550 6.511605 CGCATTACAAGCAACTCTAATATGCA 60.512 38.462 0.00 0.00 42.45 3.96
525 551 7.365741 GCATTACAAGCAACTCTAATATGCAT 58.634 34.615 3.79 3.79 42.45 3.96
526 552 8.506437 GCATTACAAGCAACTCTAATATGCATA 58.494 33.333 9.27 9.27 42.45 3.14
528 554 9.784531 ATTACAAGCAACTCTAATATGCATAGT 57.215 29.630 12.79 12.33 42.45 2.12
531 557 9.613428 ACAAGCAACTCTAATATGCATAGTAAA 57.387 29.630 14.28 1.35 42.45 2.01
534 560 9.703892 AGCAACTCTAATATGCATAGTAAAGAG 57.296 33.333 23.10 23.10 42.45 2.85
596 622 2.549926 GGTGGTTCCTTTTTGTTGCTG 58.450 47.619 0.00 0.00 0.00 4.41
664 690 0.039911 CCCCCGTCCCCATTTACAAA 59.960 55.000 0.00 0.00 0.00 2.83
730 757 3.537874 CGGTCCCCGTCTCCATCC 61.538 72.222 0.00 0.00 42.73 3.51
774 828 3.615937 GCGTCTCGTATCGTATCCATAGA 59.384 47.826 0.00 0.00 0.00 1.98
787 841 0.324614 CCATAGACTGCACCACACCA 59.675 55.000 0.00 0.00 0.00 4.17
922 993 1.539388 CCTCGCTCGCTATCTCAATCT 59.461 52.381 0.00 0.00 0.00 2.40
929 1000 2.225255 TCGCTATCTCAATCTCTCGCTG 59.775 50.000 0.00 0.00 0.00 5.18
932 1003 2.079170 ATCTCAATCTCTCGCTGGGA 57.921 50.000 0.00 0.00 0.00 4.37
975 1046 2.480845 CCTGCGCCTACCATAAGTAAC 58.519 52.381 4.18 0.00 0.00 2.50
1005 1076 2.635899 GTGACTCACCGACGACGT 59.364 61.111 0.00 0.00 37.88 4.34
1006 1077 1.009222 GTGACTCACCGACGACGTT 60.009 57.895 0.13 0.00 37.88 3.99
1246 1347 3.298958 GGCACCTCTCGTCCATCA 58.701 61.111 0.00 0.00 0.00 3.07
1840 1953 0.463204 AGGTGAGGATGACATCTGCG 59.537 55.000 14.95 0.00 0.00 5.18
1842 1955 1.144716 TGAGGATGACATCTGCGCC 59.855 57.895 14.95 0.00 0.00 6.53
1861 1974 0.860533 CGCATTGCTTTTGTTGGTGG 59.139 50.000 7.12 0.00 0.00 4.61
1862 1975 1.805871 CGCATTGCTTTTGTTGGTGGT 60.806 47.619 7.12 0.00 0.00 4.16
1863 1976 2.544694 CGCATTGCTTTTGTTGGTGGTA 60.545 45.455 7.12 0.00 0.00 3.25
2007 2120 6.510157 GCAATCAATATACACTTGTGGACTCG 60.510 42.308 5.72 0.00 0.00 4.18
2085 2202 0.737219 GCTTCAGCTGGCATAGGTTG 59.263 55.000 15.13 0.00 38.21 3.77
2111 2228 1.282817 TCACGTTCACAGTTTCACCG 58.717 50.000 0.00 0.00 0.00 4.94
2153 2271 0.947180 TGTGTTCCGCTCTTTACGCC 60.947 55.000 0.00 0.00 0.00 5.68
2298 2429 8.685427 TCCATTATGATGAAACATTTACAGTGG 58.315 33.333 0.00 0.00 35.16 4.00
2730 3032 1.984570 CACGGCTTCTCCTCCTCCA 60.985 63.158 0.00 0.00 0.00 3.86
2731 3033 1.684049 ACGGCTTCTCCTCCTCCAG 60.684 63.158 0.00 0.00 0.00 3.86
2831 3148 3.379445 GAGGAAGACGACCCGGCA 61.379 66.667 0.00 0.00 37.34 5.69
2981 3298 1.448893 GCCCTACGCCAACATCGAA 60.449 57.895 0.00 0.00 0.00 3.71
3098 3435 2.028930 TCTTTTCTCTCTCGGTTGCCTC 60.029 50.000 0.00 0.00 0.00 4.70
3099 3436 1.633774 TTTCTCTCTCGGTTGCCTCT 58.366 50.000 0.00 0.00 0.00 3.69
3100 3437 1.633774 TTCTCTCTCGGTTGCCTCTT 58.366 50.000 0.00 0.00 0.00 2.85
3101 3438 0.891373 TCTCTCTCGGTTGCCTCTTG 59.109 55.000 0.00 0.00 0.00 3.02
3102 3439 0.739112 CTCTCTCGGTTGCCTCTTGC 60.739 60.000 0.00 0.00 41.77 4.01
3260 3597 1.057851 TTCCTTTCCCGGTGGTCACT 61.058 55.000 0.00 0.00 0.00 3.41
3265 3602 4.789075 CCCGGTGGTCACTACGCG 62.789 72.222 3.53 3.53 0.00 6.01
3266 3603 4.789075 CCGGTGGTCACTACGCGG 62.789 72.222 12.47 6.78 0.00 6.46
3267 3604 4.047059 CGGTGGTCACTACGCGGT 62.047 66.667 12.47 0.00 0.00 5.68
3268 3605 2.431942 GGTGGTCACTACGCGGTG 60.432 66.667 12.47 10.40 38.44 4.94
3270 3607 3.299977 TGGTCACTACGCGGTGCT 61.300 61.111 12.47 0.00 37.16 4.40
3287 3629 3.491267 GGTGCTATTTGCTAGACGACATC 59.509 47.826 0.00 0.00 43.37 3.06
3320 3662 1.727857 CGATGGCTTTTTGTACGTGCC 60.728 52.381 0.00 0.02 43.49 5.01
3323 3665 1.457009 GGCTTTTTGTACGTGCCCCA 61.457 55.000 0.00 0.00 37.81 4.96
3336 3678 2.491693 CGTGCCCCATTTTGTTGATAGT 59.508 45.455 0.00 0.00 0.00 2.12
3343 3685 5.192927 CCCATTTTGTTGATAGTAGGAGCA 58.807 41.667 0.00 0.00 0.00 4.26
3377 3719 0.375106 GCATCTGGCTACTTGCGTTC 59.625 55.000 0.00 0.00 44.05 3.95
3378 3720 1.725641 CATCTGGCTACTTGCGTTCA 58.274 50.000 0.00 0.00 44.05 3.18
3379 3721 2.283298 CATCTGGCTACTTGCGTTCAT 58.717 47.619 0.00 0.00 44.05 2.57
3380 3722 1.725641 TCTGGCTACTTGCGTTCATG 58.274 50.000 0.00 0.00 44.05 3.07
3381 3723 0.097674 CTGGCTACTTGCGTTCATGC 59.902 55.000 0.00 0.00 44.05 4.06
3382 3724 1.060937 GGCTACTTGCGTTCATGCG 59.939 57.895 0.00 0.00 44.05 4.73
3383 3725 1.635663 GGCTACTTGCGTTCATGCGT 61.636 55.000 0.00 0.00 44.05 5.24
3384 3726 0.165944 GCTACTTGCGTTCATGCGTT 59.834 50.000 0.00 0.00 37.81 4.84
3425 3768 4.542735 GACACCTGAACAAATTTTACCGG 58.457 43.478 0.00 0.00 0.00 5.28
3426 3769 3.243602 ACACCTGAACAAATTTTACCGGC 60.244 43.478 0.00 0.00 0.00 6.13
3427 3770 3.005367 CACCTGAACAAATTTTACCGGCT 59.995 43.478 0.00 0.00 0.00 5.52
3455 3802 5.669477 AGCATCAAGATTCAAGAGAGGTAC 58.331 41.667 0.00 0.00 0.00 3.34
3478 3834 2.834113 AGTGCCTATGTCTGTAGGGTT 58.166 47.619 2.46 0.00 41.32 4.11
3504 3860 2.514205 CCTTCCTGGTTTGTGCAAAG 57.486 50.000 0.00 0.00 0.00 2.77
3505 3861 2.031120 CCTTCCTGGTTTGTGCAAAGA 58.969 47.619 0.00 0.00 0.00 2.52
3506 3862 2.035066 CCTTCCTGGTTTGTGCAAAGAG 59.965 50.000 0.00 0.00 0.00 2.85
3509 3865 2.172505 TCCTGGTTTGTGCAAAGAGAGA 59.827 45.455 0.00 0.00 0.00 3.10
3510 3866 2.291741 CCTGGTTTGTGCAAAGAGAGAC 59.708 50.000 0.00 0.00 0.00 3.36
3511 3867 2.945008 CTGGTTTGTGCAAAGAGAGACA 59.055 45.455 0.00 0.00 0.00 3.41
3514 3870 4.756642 TGGTTTGTGCAAAGAGAGACATAG 59.243 41.667 0.00 0.00 0.00 2.23
3516 3872 5.932303 GGTTTGTGCAAAGAGAGACATAGTA 59.068 40.000 0.00 0.00 0.00 1.82
3517 3873 6.091441 GGTTTGTGCAAAGAGAGACATAGTAG 59.909 42.308 0.00 0.00 0.00 2.57
3529 3924 8.478877 AGAGAGACATAGTAGGGTTGTATTTTG 58.521 37.037 0.00 0.00 0.00 2.44
3562 3957 1.871676 GACTTTTGGGTGGTCGTCTTC 59.128 52.381 0.00 0.00 0.00 2.87
3683 4079 3.809279 CCTCCATTGCCTGTTTCAAAAAC 59.191 43.478 0.00 0.00 0.00 2.43
3758 4158 2.542766 AAATTGTGCTGCGAATACCG 57.457 45.000 0.00 0.00 42.21 4.02
3774 4174 5.388890 CGAATACCGCTGAGCAAATCTTATC 60.389 44.000 4.88 0.00 0.00 1.75
3878 4282 6.256757 GCTCTTTTCTACGTATCAATGCTCTT 59.743 38.462 0.00 0.00 0.00 2.85
3923 4327 0.465097 GTGCAGATCAGGGGGTGATG 60.465 60.000 0.00 0.00 46.64 3.07
3973 4391 1.003262 TGTACAACGGAGCGCGTAAC 61.003 55.000 8.43 0.00 0.00 2.50
3977 4395 1.300388 AACGGAGCGCGTAACTGTT 60.300 52.632 8.43 13.57 0.00 3.16
4038 4456 2.455674 TCGTCTGAACTTGGGACATG 57.544 50.000 0.00 0.00 39.30 3.21
4039 4457 1.001974 TCGTCTGAACTTGGGACATGG 59.998 52.381 0.00 0.00 39.30 3.66
4040 4458 1.168714 GTCTGAACTTGGGACATGGC 58.831 55.000 0.00 0.00 39.30 4.40
4041 4459 0.321564 TCTGAACTTGGGACATGGCG 60.322 55.000 0.00 0.00 39.30 5.69
4062 4480 4.619760 GCGGTGCTCATTTTAAAAGTTACC 59.380 41.667 6.79 8.98 0.00 2.85
4063 4481 5.764131 CGGTGCTCATTTTAAAAGTTACCA 58.236 37.500 6.79 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.979288 ACTATGATACTCCCATTACGACC 57.021 43.478 0.00 0.00 0.00 4.79
45 46 6.978338 TCAACTATGATACTCCCATTACGAC 58.022 40.000 0.00 0.00 0.00 4.34
81 82 4.463891 ACCTCATCAAAATTGCCTAGTTGG 59.536 41.667 0.00 0.00 39.35 3.77
87 88 7.293073 ACTATATCACCTCATCAAAATTGCCT 58.707 34.615 0.00 0.00 0.00 4.75
150 171 8.818141 ACATGCATGACACATAGTAGTATAAC 57.182 34.615 32.75 0.00 0.00 1.89
184 205 6.741724 ACCTCCCCAGTGTATAAATGAATTT 58.258 36.000 0.00 0.00 0.00 1.82
223 244 5.874261 GGAGGGAGTATCGTACACTAGTATC 59.126 48.000 0.00 0.00 34.37 2.24
224 245 5.568423 CGGAGGGAGTATCGTACACTAGTAT 60.568 48.000 0.00 0.00 34.37 2.12
225 246 4.262207 CGGAGGGAGTATCGTACACTAGTA 60.262 50.000 0.00 0.00 34.37 1.82
227 248 3.065655 CGGAGGGAGTATCGTACACTAG 58.934 54.545 0.00 0.00 34.37 2.57
228 249 2.435805 ACGGAGGGAGTATCGTACACTA 59.564 50.000 0.00 0.00 34.37 2.74
229 250 1.211457 ACGGAGGGAGTATCGTACACT 59.789 52.381 0.00 0.00 34.37 3.55
230 251 1.673168 ACGGAGGGAGTATCGTACAC 58.327 55.000 0.00 0.00 34.37 2.90
231 252 2.425143 AACGGAGGGAGTATCGTACA 57.575 50.000 0.00 0.00 35.26 2.90
232 253 3.790152 AAAACGGAGGGAGTATCGTAC 57.210 47.619 0.00 0.00 35.26 3.67
233 254 6.469782 AATAAAAACGGAGGGAGTATCGTA 57.530 37.500 0.00 0.00 35.26 3.43
234 255 5.349061 AATAAAAACGGAGGGAGTATCGT 57.651 39.130 0.00 0.00 37.45 3.73
235 256 6.982724 AGTAAATAAAAACGGAGGGAGTATCG 59.017 38.462 0.00 0.00 34.37 2.92
236 257 7.440556 GGAGTAAATAAAAACGGAGGGAGTATC 59.559 40.741 0.00 0.00 0.00 2.24
237 258 7.278135 GGAGTAAATAAAAACGGAGGGAGTAT 58.722 38.462 0.00 0.00 0.00 2.12
238 259 6.352137 GGGAGTAAATAAAAACGGAGGGAGTA 60.352 42.308 0.00 0.00 0.00 2.59
239 260 5.494724 GGAGTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
240 261 4.880120 GGGAGTAAATAAAAACGGAGGGAG 59.120 45.833 0.00 0.00 0.00 4.30
241 262 4.324486 GGGGAGTAAATAAAAACGGAGGGA 60.324 45.833 0.00 0.00 0.00 4.20
242 263 3.949754 GGGGAGTAAATAAAAACGGAGGG 59.050 47.826 0.00 0.00 0.00 4.30
243 264 4.851843 AGGGGAGTAAATAAAAACGGAGG 58.148 43.478 0.00 0.00 0.00 4.30
244 265 9.617523 TTAATAGGGGAGTAAATAAAAACGGAG 57.382 33.333 0.00 0.00 0.00 4.63
245 266 9.972106 TTTAATAGGGGAGTAAATAAAAACGGA 57.028 29.630 0.00 0.00 0.00 4.69
254 275 9.777008 TTGACCAAATTTAATAGGGGAGTAAAT 57.223 29.630 0.00 0.00 39.40 1.40
255 276 9.603189 TTTGACCAAATTTAATAGGGGAGTAAA 57.397 29.630 0.00 0.00 32.50 2.01
256 277 9.250246 CTTTGACCAAATTTAATAGGGGAGTAA 57.750 33.333 0.00 0.00 0.00 2.24
257 278 8.395605 ACTTTGACCAAATTTAATAGGGGAGTA 58.604 33.333 0.00 0.00 0.00 2.59
258 279 7.246027 ACTTTGACCAAATTTAATAGGGGAGT 58.754 34.615 0.00 0.00 0.00 3.85
259 280 7.396055 TGACTTTGACCAAATTTAATAGGGGAG 59.604 37.037 0.00 0.00 0.00 4.30
260 281 7.242359 TGACTTTGACCAAATTTAATAGGGGA 58.758 34.615 0.00 0.00 0.00 4.81
261 282 7.475137 TGACTTTGACCAAATTTAATAGGGG 57.525 36.000 0.00 0.00 0.00 4.79
262 283 7.545615 GCTTGACTTTGACCAAATTTAATAGGG 59.454 37.037 0.00 0.00 0.00 3.53
263 284 8.306761 AGCTTGACTTTGACCAAATTTAATAGG 58.693 33.333 0.00 0.00 0.00 2.57
264 285 9.696917 AAGCTTGACTTTGACCAAATTTAATAG 57.303 29.630 0.00 0.00 33.71 1.73
266 287 8.962884 AAAGCTTGACTTTGACCAAATTTAAT 57.037 26.923 0.00 0.00 47.00 1.40
281 302 9.736023 CTTTGACAAAGTTTATAAAGCTTGACT 57.264 29.630 18.12 3.59 33.80 3.41
447 470 8.798859 ATGCATATTAGAGTTTGACTGAAGTT 57.201 30.769 0.00 0.00 0.00 2.66
468 491 9.474313 ACTCCCTTCATTTTTATTTACTATGCA 57.526 29.630 0.00 0.00 0.00 3.96
485 508 5.601583 TGTAATGCGTATTACTCCCTTCA 57.398 39.130 28.72 10.91 45.71 3.02
486 509 5.050295 GCTTGTAATGCGTATTACTCCCTTC 60.050 44.000 28.72 13.45 45.71 3.46
489 512 4.124238 TGCTTGTAATGCGTATTACTCCC 58.876 43.478 28.72 19.17 45.71 4.30
496 519 8.712363 CATATTAGAGTTGCTTGTAATGCGTAT 58.288 33.333 0.00 0.00 40.34 3.06
514 540 9.967346 GTGTGTCTCTTTACTATGCATATTAGA 57.033 33.333 6.92 6.90 0.00 2.10
515 541 8.906693 CGTGTGTCTCTTTACTATGCATATTAG 58.093 37.037 6.92 0.00 0.00 1.73
516 542 7.381408 GCGTGTGTCTCTTTACTATGCATATTA 59.619 37.037 6.92 3.05 0.00 0.98
517 543 6.201044 GCGTGTGTCTCTTTACTATGCATATT 59.799 38.462 6.92 4.16 0.00 1.28
518 544 5.692204 GCGTGTGTCTCTTTACTATGCATAT 59.308 40.000 6.92 0.64 0.00 1.78
519 545 5.041287 GCGTGTGTCTCTTTACTATGCATA 58.959 41.667 6.20 6.20 0.00 3.14
520 546 3.865745 GCGTGTGTCTCTTTACTATGCAT 59.134 43.478 3.79 3.79 0.00 3.96
521 547 3.250744 GCGTGTGTCTCTTTACTATGCA 58.749 45.455 0.00 0.00 0.00 3.96
522 548 2.279136 CGCGTGTGTCTCTTTACTATGC 59.721 50.000 0.00 0.00 0.00 3.14
523 549 2.279136 GCGCGTGTGTCTCTTTACTATG 59.721 50.000 8.43 0.00 0.00 2.23
524 550 2.527100 GCGCGTGTGTCTCTTTACTAT 58.473 47.619 8.43 0.00 0.00 2.12
525 551 1.401931 GGCGCGTGTGTCTCTTTACTA 60.402 52.381 8.43 0.00 0.00 1.82
526 552 0.666577 GGCGCGTGTGTCTCTTTACT 60.667 55.000 8.43 0.00 0.00 2.24
527 553 1.623973 GGGCGCGTGTGTCTCTTTAC 61.624 60.000 8.43 0.00 0.00 2.01
528 554 1.373748 GGGCGCGTGTGTCTCTTTA 60.374 57.895 8.43 0.00 0.00 1.85
529 555 2.665185 GGGCGCGTGTGTCTCTTT 60.665 61.111 8.43 0.00 0.00 2.52
579 605 2.979814 ACCAGCAACAAAAAGGAACC 57.020 45.000 0.00 0.00 0.00 3.62
596 622 1.758936 GGGGCGCCCATAATTATACC 58.241 55.000 44.46 21.06 44.65 2.73
664 690 4.323417 TGCGAGTAGGAACAAATGTTGAT 58.677 39.130 3.05 0.00 38.56 2.57
774 828 2.124320 GGTGTGGTGTGGTGCAGT 60.124 61.111 0.00 0.00 0.00 4.40
871 942 1.173913 GGCAGAGGCAATTAAACCGT 58.826 50.000 0.00 0.00 43.71 4.83
964 1035 1.143969 GAGCGCGCGTTACTTATGGT 61.144 55.000 32.35 2.39 0.00 3.55
1005 1076 2.745884 CTGGGGCGTGAATGCGAA 60.746 61.111 0.00 0.00 35.06 4.70
1236 1337 1.293924 GCTTGGTCATGATGGACGAG 58.706 55.000 0.00 0.92 38.70 4.18
1840 1953 0.879839 ACCAACAAAAGCAATGCGGC 60.880 50.000 0.00 0.00 0.00 6.53
1842 1955 0.860533 CCACCAACAAAAGCAATGCG 59.139 50.000 0.00 0.00 0.00 4.73
1861 1974 5.220815 CGATCTGAACCAGTACCACTACTAC 60.221 48.000 0.00 0.00 31.46 2.73
1862 1975 4.880120 CGATCTGAACCAGTACCACTACTA 59.120 45.833 0.00 0.00 31.46 1.82
1863 1976 3.695060 CGATCTGAACCAGTACCACTACT 59.305 47.826 0.00 0.00 33.01 2.57
1975 2088 6.813152 ACAAGTGTATATTGATTGCAAAAGGC 59.187 34.615 1.71 0.00 45.13 4.35
2007 2120 4.781934 AGTAATTGAAGTGGCACTATCCC 58.218 43.478 22.37 10.99 0.00 3.85
2063 2179 1.099879 CCTATGCCAGCTGAAGCCAC 61.100 60.000 17.39 0.00 43.38 5.01
2085 2202 2.825086 ACTGTGAACGTGAAAACTGC 57.175 45.000 0.00 0.00 0.00 4.40
2111 2228 6.168270 AGATTGTATCTGGAGAAACCTAGC 57.832 41.667 0.00 0.00 38.44 3.42
2140 2257 0.742990 TGGATTGGCGTAAAGAGCGG 60.743 55.000 0.00 0.00 35.00 5.52
2209 2327 4.503734 GTGAAAGATCTCGCAGAATCTCAG 59.496 45.833 0.00 0.00 34.85 3.35
2298 2429 1.827969 ACACCATCAGACCTACTGCTC 59.172 52.381 0.00 0.00 45.38 4.26
2362 2655 5.186256 TGACACACACCCACCATTATATT 57.814 39.130 0.00 0.00 0.00 1.28
2364 2657 3.585289 ACTGACACACACCCACCATTATA 59.415 43.478 0.00 0.00 0.00 0.98
2365 2658 2.375174 ACTGACACACACCCACCATTAT 59.625 45.455 0.00 0.00 0.00 1.28
2366 2659 1.771854 ACTGACACACACCCACCATTA 59.228 47.619 0.00 0.00 0.00 1.90
2981 3298 1.190643 GGTTCAGCAGGTAGAGCTCT 58.809 55.000 22.17 22.17 41.14 4.09
3098 3435 1.537202 GTTAACAGAGTGGCAGGCAAG 59.463 52.381 0.00 0.00 0.00 4.01
3099 3436 1.604604 GTTAACAGAGTGGCAGGCAA 58.395 50.000 0.00 0.00 0.00 4.52
3100 3437 0.602638 CGTTAACAGAGTGGCAGGCA 60.603 55.000 6.39 0.00 0.00 4.75
3101 3438 0.602905 ACGTTAACAGAGTGGCAGGC 60.603 55.000 6.39 0.00 0.00 4.85
3102 3439 1.878953 AACGTTAACAGAGTGGCAGG 58.121 50.000 0.00 0.00 0.00 4.85
3265 3602 5.830810 CGATGTCGTCTAGCAAATAGCACC 61.831 50.000 0.00 0.00 39.26 5.01
3266 3603 3.180584 CGATGTCGTCTAGCAAATAGCAC 59.819 47.826 0.00 0.00 39.26 4.40
3267 3604 3.066203 TCGATGTCGTCTAGCAAATAGCA 59.934 43.478 2.04 0.00 42.76 3.49
3268 3605 3.422546 GTCGATGTCGTCTAGCAAATAGC 59.577 47.826 2.04 0.00 41.49 2.97
3270 3607 3.547413 CCGTCGATGTCGTCTAGCAAATA 60.547 47.826 3.52 0.00 40.80 1.40
3287 3629 2.452813 CCATCGCTGGTTTCCGTCG 61.453 63.158 0.00 0.00 37.79 5.12
3311 3653 1.338337 CAACAAAATGGGGCACGTACA 59.662 47.619 0.00 0.00 0.00 2.90
3320 3662 5.066505 GTGCTCCTACTATCAACAAAATGGG 59.933 44.000 0.00 0.00 0.00 4.00
3323 3665 7.575720 GCAAAGTGCTCCTACTATCAACAAAAT 60.576 37.037 0.00 0.00 40.96 1.82
3336 3678 0.321564 ACGCATGCAAAGTGCTCCTA 60.322 50.000 19.57 0.00 45.31 2.94
3377 3719 0.669318 ACGAGGGTACACAACGCATG 60.669 55.000 13.15 0.00 43.32 4.06
3378 3720 0.389426 GACGAGGGTACACAACGCAT 60.389 55.000 13.15 0.00 43.32 4.73
3379 3721 1.007038 GACGAGGGTACACAACGCA 60.007 57.895 13.15 0.00 43.32 5.24
3380 3722 2.084681 CGACGAGGGTACACAACGC 61.085 63.158 13.15 6.80 41.25 4.84
3381 3723 2.084681 GCGACGAGGGTACACAACG 61.085 63.158 11.97 11.97 0.00 4.10
3382 3724 0.389426 ATGCGACGAGGGTACACAAC 60.389 55.000 0.00 0.00 0.00 3.32
3383 3725 0.389296 CATGCGACGAGGGTACACAA 60.389 55.000 0.00 0.00 0.00 3.33
3384 3726 1.214325 CATGCGACGAGGGTACACA 59.786 57.895 0.00 0.00 0.00 3.72
3425 3768 2.014857 TGAATCTTGATGCTCTGCAGC 58.985 47.619 9.47 0.00 45.81 5.25
3426 3769 3.939592 TCTTGAATCTTGATGCTCTGCAG 59.060 43.478 7.63 7.63 43.65 4.41
3427 3770 3.939592 CTCTTGAATCTTGATGCTCTGCA 59.060 43.478 0.00 0.00 44.86 4.41
3455 3802 3.055094 ACCCTACAGACATAGGCACTTTG 60.055 47.826 0.00 0.00 43.03 2.77
3469 3816 3.054361 AGGAAGGTGCATTAACCCTACAG 60.054 47.826 0.00 0.00 41.54 2.74
3503 3859 8.478877 CAAAATACAACCCTACTATGTCTCTCT 58.521 37.037 0.00 0.00 0.00 3.10
3504 3860 8.475639 TCAAAATACAACCCTACTATGTCTCTC 58.524 37.037 0.00 0.00 0.00 3.20
3505 3861 8.375493 TCAAAATACAACCCTACTATGTCTCT 57.625 34.615 0.00 0.00 0.00 3.10
3506 3862 9.444600 TTTCAAAATACAACCCTACTATGTCTC 57.555 33.333 0.00 0.00 0.00 3.36
3509 3865 9.528489 ACATTTCAAAATACAACCCTACTATGT 57.472 29.630 0.00 0.00 0.00 2.29
3514 3870 8.880878 ACAAACATTTCAAAATACAACCCTAC 57.119 30.769 0.00 0.00 0.00 3.18
3516 3872 7.710475 CAGACAAACATTTCAAAATACAACCCT 59.290 33.333 0.00 0.00 0.00 4.34
3517 3873 7.708752 TCAGACAAACATTTCAAAATACAACCC 59.291 33.333 0.00 0.00 0.00 4.11
3529 3924 5.519927 CACCCAAAAGTCAGACAAACATTTC 59.480 40.000 2.66 0.00 0.00 2.17
3562 3957 9.472789 ATGCATGCATGGAATCGAATCTATTCG 62.473 40.741 31.74 16.93 46.03 3.34
3758 4158 4.092675 GGCTATCGATAAGATTTGCTCAGC 59.907 45.833 6.58 3.35 40.66 4.26
3774 4174 3.643978 GCTGCGCCTTGGCTATCG 61.644 66.667 4.18 0.00 0.00 2.92
3794 4194 3.499737 GCCAAGGACGTGCCATCG 61.500 66.667 2.38 0.00 40.02 3.84
3795 4195 2.045926 AGCCAAGGACGTGCCATC 60.046 61.111 2.38 0.00 40.02 3.51
3796 4196 2.360350 CAGCCAAGGACGTGCCAT 60.360 61.111 2.38 0.00 40.02 4.40
3816 4216 1.261480 ATGGCTGGTAGCGATCTAGG 58.739 55.000 0.00 0.00 43.62 3.02
3878 4282 4.149511 TCCACAGACACATCAACAGAAA 57.850 40.909 0.00 0.00 0.00 2.52
3915 4319 2.203209 GGTCCATCGCATCACCCC 60.203 66.667 0.00 0.00 0.00 4.95
3973 4391 1.062587 CGGCAAATAGGAAGCGAACAG 59.937 52.381 0.00 0.00 0.00 3.16
3977 4395 0.804544 CGACGGCAAATAGGAAGCGA 60.805 55.000 0.00 0.00 0.00 4.93
3986 4404 1.240256 TTAGCAAACCGACGGCAAAT 58.760 45.000 15.39 0.00 0.00 2.32
4024 4442 1.303236 CCGCCATGTCCCAAGTTCA 60.303 57.895 0.00 0.00 0.00 3.18
4026 4444 1.603455 CACCGCCATGTCCCAAGTT 60.603 57.895 0.00 0.00 0.00 2.66
4027 4445 2.034066 CACCGCCATGTCCCAAGT 59.966 61.111 0.00 0.00 0.00 3.16
4028 4446 3.443045 GCACCGCCATGTCCCAAG 61.443 66.667 0.00 0.00 0.00 3.61
4033 4451 0.527565 AAAATGAGCACCGCCATGTC 59.472 50.000 0.00 0.00 0.00 3.06
4034 4452 1.832883 TAAAATGAGCACCGCCATGT 58.167 45.000 0.00 0.00 0.00 3.21
4036 4454 3.258123 ACTTTTAAAATGAGCACCGCCAT 59.742 39.130 0.09 0.00 0.00 4.40
4037 4455 2.625790 ACTTTTAAAATGAGCACCGCCA 59.374 40.909 0.09 0.00 0.00 5.69
4038 4456 3.297830 ACTTTTAAAATGAGCACCGCC 57.702 42.857 0.09 0.00 0.00 6.13
4039 4457 4.619760 GGTAACTTTTAAAATGAGCACCGC 59.380 41.667 0.09 0.00 0.00 5.68
4040 4458 5.764131 TGGTAACTTTTAAAATGAGCACCG 58.236 37.500 0.09 0.00 37.61 4.94
4041 4459 6.640907 CACTGGTAACTTTTAAAATGAGCACC 59.359 38.462 0.09 5.90 37.61 5.01
4062 4480 5.739752 TCTTCACACATGACTTTTCACTG 57.260 39.130 0.00 0.00 33.38 3.66
4063 4481 6.369059 CTTCTTCACACATGACTTTTCACT 57.631 37.500 0.00 0.00 33.38 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.