AutoCloner

Multiple sequence alignment - TraesCS3D01G317800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G317800	chr3D	100.000	3512	0	0	1	3512	431830906	431834417	0.000000e+00	6486.0
1	TraesCS3D01G317800	chr3D	87.901	2149	208	24	924	3053	431627760	431629875	0.000000e+00	2481.0
2	TraesCS3D01G317800	chr3D	87.626	1988	207	20	1103	3053	431448243	431450228	0.000000e+00	2272.0
3	TraesCS3D01G317800	chr3D	83.842	1541	199	24	1242	2760	438047162	438048674	0.000000e+00	1421.0
4	TraesCS3D01G317800	chr3D	90.431	209	18	1	3202	3410	431629873	431630079	1.240000e-69	274.0
5	TraesCS3D01G317800	chr3D	92.473	93	7	0	3403	3495	431834179	431834271	2.200000e-27	134.0
6	TraesCS3D01G317800	chr3D	92.473	93	7	0	3274	3366	431834308	431834400	2.200000e-27	134.0
7	TraesCS3D01G317800	chr3D	87.719	114	13	1	3091	3204	57504470	57504582	7.910000e-27	132.0
8	TraesCS3D01G317800	chr3D	90.909	88	8	0	3408	3495	431629948	431630035	6.160000e-23	119.0
9	TraesCS3D01G317800	chr3D	89.773	88	9	0	3408	3495	431450301	431450388	2.870000e-21	113.0
10	TraesCS3D01G317800	chr3B	93.305	3510	176	21	1	3495	564037115	564040580	0.000000e+00	5125.0
11	TraesCS3D01G317800	chr3B	86.237	2187	215	43	887	3053	564023095	564025215	0.000000e+00	2292.0
12	TraesCS3D01G317800	chr3B	84.018	1339	167	20	1338	2656	573487553	573488864	0.000000e+00	1243.0
13	TraesCS3D01G317800	chr3B	85.498	331	33	5	2445	2760	573469028	573469358	7.270000e-87	331.0
14	TraesCS3D01G317800	chr3B	92.344	209	14	1	3202	3410	564025213	564025419	2.650000e-76	296.0
15	TraesCS3D01G317800	chr3B	92.742	124	7	1	3284	3405	564040496	564040619	1.000000e-40	178.0
16	TraesCS3D01G317800	chr3B	88.696	115	12	1	3093	3207	41018469	41018582	4.730000e-29	139.0
17	TraesCS3D01G317800	chr3B	92.045	88	7	0	3408	3495	564025288	564025375	1.320000e-24	124.0
18	TraesCS3D01G317800	chr3A	93.561	3370	166	18	107	3453	569229155	569232496	0.000000e+00	4974.0
19	TraesCS3D01G317800	chr3A	88.636	1672	163	12	1099	2757	569167618	569169275	0.000000e+00	2010.0
20	TraesCS3D01G317800	chr3A	87.724	1727	170	24	924	2633	568971826	568973527	0.000000e+00	1977.0
21	TraesCS3D01G317800	chr3A	83.436	1461	196	24	929	2383	576270159	576268739	0.000000e+00	1315.0
22	TraesCS3D01G317800	chr3A	88.841	466	47	4	2592	3053	569169276	569169740	5.090000e-158	568.0
23	TraesCS3D01G317800	chr3A	85.928	334	29	8	2445	2760	576268711	576268378	1.210000e-89	340.0
24	TraesCS3D01G317800	chr3A	93.301	209	12	1	3202	3410	569169738	569169944	1.220000e-79	307.0
25	TraesCS3D01G317800	chr3A	92.473	93	7	0	3403	3495	569232309	569232401	2.200000e-27	134.0
26	TraesCS3D01G317800	chr3A	96.296	81	3	0	3323	3403	569232600	569232680	2.200000e-27	134.0
27	TraesCS3D01G317800	chr3A	93.182	88	6	0	3408	3495	569169813	569169900	2.850000e-26	130.0
28	TraesCS3D01G317800	chr3A	93.333	45	3	0	2	46	569229048	569229092	2.260000e-07	67.6
29	TraesCS3D01G317800	chr6B	88.235	119	12	2	3093	3211	492505537	492505653	1.310000e-29	141.0
30	TraesCS3D01G317800	chr7B	89.815	108	10	1	3097	3204	357651590	357651484	1.700000e-28	137.0
31	TraesCS3D01G317800	chr7D	87.931	116	13	1	3095	3210	550233539	550233653	6.110000e-28	135.0
32	TraesCS3D01G317800	chr7D	87.931	116	12	2	3097	3211	566783017	566782903	6.110000e-28	135.0
33	TraesCS3D01G317800	chr1A	88.496	113	12	1	3097	3209	432985610	432985499	6.110000e-28	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G317800	chr3D	431830906	431834417	3511	False	2251.333333	6486	94.982000	1	3512	3	chr3D.!!$F5	3511
1	TraesCS3D01G317800	chr3D	438047162	438048674	1512	False	1421.000000	1421	83.842000	1242	2760	1	chr3D.!!$F2	1518
2	TraesCS3D01G317800	chr3D	431448243	431450388	2145	False	1192.500000	2272	88.699500	1103	3495	2	chr3D.!!$F3	2392
3	TraesCS3D01G317800	chr3D	431627760	431630079	2319	False	958.000000	2481	89.747000	924	3495	3	chr3D.!!$F4	2571
4	TraesCS3D01G317800	chr3B	564037115	564040619	3504	False	2651.500000	5125	93.023500	1	3495	2	chr3B.!!$F5	3494
5	TraesCS3D01G317800	chr3B	573487553	573488864	1311	False	1243.000000	1243	84.018000	1338	2656	1	chr3B.!!$F3	1318
6	TraesCS3D01G317800	chr3B	564023095	564025419	2324	False	904.000000	2292	90.208667	887	3495	3	chr3B.!!$F4	2608
7	TraesCS3D01G317800	chr3A	568971826	568973527	1701	False	1977.000000	1977	87.724000	924	2633	1	chr3A.!!$F1	1709
8	TraesCS3D01G317800	chr3A	569229048	569232680	3632	False	1327.400000	4974	93.915750	2	3495	4	chr3A.!!$F3	3493
9	TraesCS3D01G317800	chr3A	576268378	576270159	1781	True	827.500000	1315	84.682000	929	2760	2	chr3A.!!$R1	1831
10	TraesCS3D01G317800	chr3A	569167618	569169944	2326	False	753.750000	2010	90.990000	1099	3495	4	chr3A.!!$F2	2396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
717	754	1.388065	CGACAGCGAGAGGGAGGAAT	61.388	60.0	0.0	0.0	40.82	3.01	F
1200	1248	0.318120	CACCCAAGCACAATCCCAAC	59.682	55.0	0.0	0.0	0.00	3.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2286	2362	0.882042	GCACACCACACTCCACTCTG	60.882	60.0	0.00	0.0	0.00	3.35	R
3052	3326	1.289160	TGGAATGGAGCTACAAGCCT	58.711	50.0	18.26	0.0	43.77	4.58	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	96	5.048782	TCAAGCATCGCAACTAAAAGTTCAT	60.049	36.000	0.00	0.00	36.03	2.57
75	110	8.107095	ACTAAAAGTTCATCAAGCAACCCTATA	58.893	33.333	0.00	0.00	0.00	1.31
93	128	7.408543	ACCCTATATGCATGCTCTTTGATATT	58.591	34.615	20.33	1.06	0.00	1.28
101	136	6.774170	TGCATGCTCTTTGATATTGAACCTAT	59.226	34.615	20.33	0.00	0.00	2.57
139	176	2.234414	ACAAATGGAATCAATGGCGCTT	59.766	40.909	7.64	0.00	0.00	4.68
171	208	2.369860	CTGAGGATTACTATGCTGGCCA	59.630	50.000	4.71	4.71	31.91	5.36
173	210	2.104792	GAGGATTACTATGCTGGCCACA	59.895	50.000	0.00	5.81	31.91	4.17
215	252	1.443702	CACATCGACGAGGCGTGAA	60.444	57.895	9.79	0.00	41.37	3.18
224	261	2.478894	GACGAGGCGTGAATTTCTGAAA	59.521	45.455	5.15	5.15	41.37	2.69
247	284	3.745803	GGCGACGACGGAGAGGTT	61.746	66.667	9.67	0.00	40.15	3.50
364	401	4.143333	CGCCGGGTCGTTGGAGAT	62.143	66.667	2.18	0.00	0.00	2.75
366	403	3.014085	GCCGGGTCGTTGGAGATCA	62.014	63.158	2.18	0.00	0.00	2.92
637	674	4.496336	GAGCTTGGCCAGGCGGAT	62.496	66.667	31.54	16.85	38.56	4.18
717	754	1.388065	CGACAGCGAGAGGGAGGAAT	61.388	60.000	0.00	0.00	40.82	3.01
906	943	1.515954	CGGCCTGTGTATTCGAGGT	59.484	57.895	0.00	0.00	0.00	3.85
1200	1248	0.318120	CACCCAAGCACAATCCCAAC	59.682	55.000	0.00	0.00	0.00	3.77
1210	1258	1.133513	ACAATCCCAACACCAAGAGCA	60.134	47.619	0.00	0.00	0.00	4.26
1336	1412	2.204461	TCCGACGGGAAGCACAAGA	61.204	57.895	15.25	0.00	40.15	3.02
1546	1622	1.078848	CAGTTGCCCTTCCTCGAGG	60.079	63.158	26.32	26.32	36.52	4.63
1764	1840	1.131303	ACCCCTCGATTGTTCCCACA	61.131	55.000	0.00	0.00	0.00	4.17
1913	1989	4.148128	TGAATGGGTTTTGCAACAATGT	57.852	36.364	0.00	0.00	34.15	2.71
1915	1991	2.215907	TGGGTTTTGCAACAATGTCG	57.784	45.000	0.00	0.00	34.15	4.35
1918	1994	0.502275	GTTTTGCAACAATGTCGGCG	59.498	50.000	0.00	0.00	32.54	6.46
1971	2047	0.922626	AGGAGAGGAATTTGGAGCCC	59.077	55.000	0.00	0.00	0.00	5.19
2339	2415	6.872628	AGTGAATGCATTGGTAGATGTATG	57.127	37.500	18.59	0.00	33.48	2.39
2374	2450	1.610038	CTGCCAAGATTGTTGTGCTCA	59.390	47.619	7.95	0.00	0.00	4.26
2429	2508	3.054139	AGGATGCCTGATAGTGCAAAAGA	60.054	43.478	0.00	0.00	41.50	2.52
2452	2531	7.671302	AGACAGTCAATTAAGAGCTGAAACTA	58.329	34.615	2.66	0.00	0.00	2.24
2658	2922	4.353437	GCTTGCCCTGTGCTGTGC	62.353	66.667	0.00	0.00	42.00	4.57
2670	2934	2.030893	TGTGCTGTGCTGCTTATTGAAC	60.031	45.455	0.00	0.00	0.00	3.18
2710	2975	8.651589	TTTAGAAGAGATCCACAGAAGTCTTA	57.348	34.615	0.00	0.00	31.49	2.10
2711	2976	8.830915	TTAGAAGAGATCCACAGAAGTCTTAT	57.169	34.615	0.00	0.00	31.49	1.73
2750	3015	2.585330	TGCTTGTGCTGATTTTCCTCA	58.415	42.857	0.00	0.00	40.48	3.86
2861	3126	9.371136	TCTAGACATTGATGATTCAACTGTTAC	57.629	33.333	0.00	0.00	44.36	2.50
2862	3127	7.065216	AGACATTGATGATTCAACTGTTACG	57.935	36.000	0.00	0.00	44.36	3.18
2868	3133	3.723260	TGATTCAACTGTTACGTCTGCA	58.277	40.909	0.00	0.00	0.00	4.41
2875	3140	3.067106	ACTGTTACGTCTGCAATGAAGG	58.933	45.455	0.00	0.00	0.00	3.46
2885	3153	5.156355	GTCTGCAATGAAGGTAAACACATG	58.844	41.667	0.00	0.00	0.00	3.21
2886	3154	3.911868	TGCAATGAAGGTAAACACATGC	58.088	40.909	0.00	0.00	34.79	4.06
2894	3164	1.271926	GGTAAACACATGCCTCCCACT	60.272	52.381	0.00	0.00	0.00	4.00
3009	3283	6.018589	TCAATGATCAGCTTCGATAGTAGG	57.981	41.667	0.09	0.00	33.65	3.18
3027	3301	9.401058	GATAGTAGGTTGTCAGGTTACTAGTTA	57.599	37.037	0.00	0.00	32.26	2.24
3050	3324	5.491982	AGCCAAACTAGAGGTGAATAGTTG	58.508	41.667	0.00	0.00	40.47	3.16
3051	3325	5.013183	AGCCAAACTAGAGGTGAATAGTTGT	59.987	40.000	0.00	0.00	40.47	3.32
3052	3326	6.212791	AGCCAAACTAGAGGTGAATAGTTGTA	59.787	38.462	0.00	0.00	40.47	2.41
3053	3327	6.535508	GCCAAACTAGAGGTGAATAGTTGTAG	59.464	42.308	0.00	0.00	40.47	2.74
3054	3328	7.042335	CCAAACTAGAGGTGAATAGTTGTAGG	58.958	42.308	0.00	0.00	40.47	3.18
3055	3329	5.855740	ACTAGAGGTGAATAGTTGTAGGC	57.144	43.478	0.00	0.00	0.00	3.93
3072	3346	1.635487	AGGCTTGTAGCTCCATTCCAA	59.365	47.619	0.00	0.00	41.99	3.53
3096	3370	1.732259	GGATTCGTTGCATCGTCAAGT	59.268	47.619	16.21	0.00	0.00	3.16
3115	3389	2.655407	AGTACTCCCCTCCGATCCATAT	59.345	50.000	0.00	0.00	0.00	1.78
3126	3400	3.572682	TCCGATCCATATTAGTTGTCGCT	59.427	43.478	0.00	0.00	0.00	4.93
3148	3422	6.567891	CGCTGAAATGGATGTATCTAGACGTA	60.568	42.308	0.00	0.00	0.00	3.57
3154	3428	9.698309	AAATGGATGTATCTAGACGTATTTCAG	57.302	33.333	0.00	0.00	0.00	3.02
3172	3446	8.973378	GTATTTCAGTGCTAGATACATCTGTTC	58.027	37.037	1.88	0.00	37.76	3.18
3174	3448	4.881850	TCAGTGCTAGATACATCTGTTCGA	59.118	41.667	1.88	0.00	37.76	3.71
3180	3454	2.683362	AGATACATCTGTTCGAGCGACA	59.317	45.455	0.00	0.00	35.42	4.35
3186	3460	2.863739	TCTGTTCGAGCGACAACTATG	58.136	47.619	0.00	0.00	0.00	2.23
3189	3463	3.845178	TGTTCGAGCGACAACTATGATT	58.155	40.909	0.00	0.00	0.00	2.57
3190	3464	4.989044	TGTTCGAGCGACAACTATGATTA	58.011	39.130	0.00	0.00	0.00	1.75
3194	3468	5.827666	TCGAGCGACAACTATGATTAATCA	58.172	37.500	20.07	20.07	41.70	2.57
3314	3732	6.202516	TGTAAACCAAACAAGGAAGAACTG	57.797	37.500	0.00	0.00	0.00	3.16
3325	3743	9.793259	AAACAAGGAAGAACTGTATGAATTAGA	57.207	29.630	0.00	0.00	0.00	2.10
3486	4017	5.585047	GTGAACTAGTGGTTTCTCACAGTTT	59.415	40.000	15.17	0.00	38.17	2.66
3495	4026	7.775561	AGTGGTTTCTCACAGTTTAGATTCTTT	59.224	33.333	0.00	0.00	39.93	2.52
3496	4027	8.406297	GTGGTTTCTCACAGTTTAGATTCTTTT	58.594	33.333	0.00	0.00	37.57	2.27
3498	4029	9.452065	GGTTTCTCACAGTTTAGATTCTTTTTC	57.548	33.333	0.00	0.00	0.00	2.29
3499	4030	9.159470	GTTTCTCACAGTTTAGATTCTTTTTCG	57.841	33.333	0.00	0.00	0.00	3.46
3500	4031	8.657074	TTCTCACAGTTTAGATTCTTTTTCGA	57.343	30.769	0.00	0.00	0.00	3.71
3501	4032	8.657074	TCTCACAGTTTAGATTCTTTTTCGAA	57.343	30.769	0.00	0.00	0.00	3.71
3503	4034	9.159470	CTCACAGTTTAGATTCTTTTTCGAAAC	57.841	33.333	10.79	0.00	38.32	2.78
3505	4036	7.111593	CACAGTTTAGATTCTTTTTCGAAACGG	59.888	37.037	10.79	6.52	41.02	4.44
3508	4039	6.476243	TTAGATTCTTTTTCGAAACGGAGG	57.524	37.500	10.79	0.00	0.00	4.30
3509	4040	3.188667	AGATTCTTTTTCGAAACGGAGGC	59.811	43.478	10.79	7.49	0.00	4.70
3510	4041	1.956297	TCTTTTTCGAAACGGAGGCA	58.044	45.000	10.79	0.00	0.00	4.75
3511	4042	2.290464	TCTTTTTCGAAACGGAGGCAA	58.710	42.857	10.79	0.00	0.00	4.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	96	2.886523	GCATGCATATAGGGTTGCTTGA	59.113	45.455	14.21	0.00	43.09	3.02
75	110	5.597182	AGGTTCAATATCAAAGAGCATGCAT	59.403	36.000	21.98	4.82	0.00	3.96
93	128	9.974980	GTTTCTTTTGGACAATTTATAGGTTCA	57.025	29.630	0.00	0.00	0.00	3.18
101	136	9.672673	TTCCATTTGTTTCTTTTGGACAATTTA	57.327	25.926	0.00	0.00	36.25	1.40
139	176	2.449031	AATCCTCAGCACCAACGCGA	62.449	55.000	15.93	0.00	36.85	5.87
171	208	0.912486	GCTACCTTGGATGGGTCTGT	59.088	55.000	0.00	0.00	38.19	3.41
173	210	1.898863	ATGCTACCTTGGATGGGTCT	58.101	50.000	0.00	0.00	38.19	3.85
215	252	2.437413	GTCGCCTCCCTTTTCAGAAAT	58.563	47.619	0.00	0.00	0.00	2.17
364	401	2.974489	GACGCCTTCGACCTCGTGA	61.974	63.158	9.32	0.00	40.80	4.35
366	403	2.267681	GATGACGCCTTCGACCTCGT	62.268	60.000	4.95	4.95	40.80	4.18
735	772	3.775654	CCCGTCCACCTCCTGCTC	61.776	72.222	0.00	0.00	0.00	4.26
876	913	3.476419	AGGCCGGTCCATTACCCG	61.476	66.667	15.92	0.00	46.62	5.28
877	914	2.192175	CAGGCCGGTCCATTACCC	59.808	66.667	15.92	0.13	46.62	3.69
1200	1248	2.664851	TTCGGCGTGCTCTTGGTG	60.665	61.111	6.85	0.00	0.00	4.17
1764	1840	7.396339	TGGATGAGTACATTGTAAGAGTACACT	59.604	37.037	0.00	0.00	40.00	3.55
1913	1989	2.125552	CTGCTTCATCCACGCCGA	60.126	61.111	0.00	0.00	0.00	5.54
1915	1991	1.086634	GTCTCTGCTTCATCCACGCC	61.087	60.000	0.00	0.00	0.00	5.68
1918	1994	2.758736	ACTGTCTCTGCTTCATCCAC	57.241	50.000	0.00	0.00	0.00	4.02
2286	2362	0.882042	GCACACCACACTCCACTCTG	60.882	60.000	0.00	0.00	0.00	3.35
2339	2415	3.086600	CAGCCTCCTCCACCCTCC	61.087	72.222	0.00	0.00	0.00	4.30
2374	2450	1.482954	GGGTAGTACTTCTTCCGCCT	58.517	55.000	0.00	0.00	34.91	5.52
2429	2508	8.725148	CATTAGTTTCAGCTCTTAATTGACTGT	58.275	33.333	0.00	0.00	0.00	3.55
2452	2531	7.044181	TCTTCTGATATTGCTTCTTCGTCATT	58.956	34.615	0.00	0.00	0.00	2.57
2658	2922	8.607459	ACGAATAGAAAGATGTTCAATAAGCAG	58.393	33.333	0.00	0.00	0.00	4.24
2783	3048	2.338809	TGGAGGATGTTTCCAGACACT	58.661	47.619	0.00	0.00	45.30	3.55
2861	3126	3.249799	TGTGTTTACCTTCATTGCAGACG	59.750	43.478	0.00	0.00	0.00	4.18
2862	3127	4.829064	TGTGTTTACCTTCATTGCAGAC	57.171	40.909	0.00	0.00	0.00	3.51
2868	3133	3.763897	GGAGGCATGTGTTTACCTTCATT	59.236	43.478	0.00	0.00	30.95	2.57
2875	3140	2.200373	AGTGGGAGGCATGTGTTTAC	57.800	50.000	0.00	0.00	0.00	2.01
2926	3197	3.581755	CATTGTCCATGCTTCAAACAGG	58.418	45.455	0.00	0.00	0.00	4.00
3009	3283	5.143376	TGGCTAACTAGTAACCTGACAAC	57.857	43.478	0.00	0.00	0.00	3.32
3027	3301	5.013183	ACAACTATTCACCTCTAGTTTGGCT	59.987	40.000	0.00	0.00	36.33	4.75
3050	3324	2.170607	TGGAATGGAGCTACAAGCCTAC	59.829	50.000	18.26	0.00	43.77	3.18
3051	3325	2.477245	TGGAATGGAGCTACAAGCCTA	58.523	47.619	18.26	5.57	43.77	3.93
3052	3326	1.289160	TGGAATGGAGCTACAAGCCT	58.711	50.000	18.26	0.00	43.77	4.58
3053	3327	2.128771	TTGGAATGGAGCTACAAGCC	57.871	50.000	0.66	8.23	43.77	4.35
3054	3328	4.427312	CATTTTGGAATGGAGCTACAAGC	58.573	43.478	0.66	0.00	39.26	4.01
3072	3346	2.746904	TGACGATGCAACGAATCCATTT	59.253	40.909	23.89	0.00	37.03	2.32
3096	3370	3.847042	AATATGGATCGGAGGGGAGTA	57.153	47.619	0.00	0.00	0.00	2.59
3115	3389	4.323417	ACATCCATTTCAGCGACAACTAA	58.677	39.130	0.00	0.00	0.00	2.24
3126	3400	9.692749	GAAATACGTCTAGATACATCCATTTCA	57.307	33.333	0.00	0.00	31.94	2.69
3148	3422	6.699204	CGAACAGATGTATCTAGCACTGAAAT	59.301	38.462	0.00	0.00	34.85	2.17
3154	3428	3.978217	GCTCGAACAGATGTATCTAGCAC	59.022	47.826	8.12	0.00	34.96	4.40
3172	3446	5.915196	TCTGATTAATCATAGTTGTCGCTCG	59.085	40.000	18.26	2.81	36.02	5.03
3174	3448	6.703607	CCTTCTGATTAATCATAGTTGTCGCT	59.296	38.462	18.26	0.00	36.02	4.93
3194	3468	7.885399	ACAGCAAATGAAAATAGTACTCCTTCT	59.115	33.333	0.00	0.00	0.00	2.85
3274	3692	6.266558	TGGTTTACAACTCTACTAACCCGTTA	59.733	38.462	0.00	0.00	35.34	3.18
3275	3693	5.070313	TGGTTTACAACTCTACTAACCCGTT	59.930	40.000	0.00	0.00	35.34	4.44
3277	3695	5.138125	TGGTTTACAACTCTACTAACCCG	57.862	43.478	0.00	0.00	35.34	5.28
3279	3697	7.790823	TGTTTGGTTTACAACTCTACTAACC	57.209	36.000	0.00	0.00	39.19	2.85
3280	3698	8.340443	CCTTGTTTGGTTTACAACTCTACTAAC	58.660	37.037	0.00	0.00	39.19	2.34
3281	3699	8.266473	TCCTTGTTTGGTTTACAACTCTACTAA	58.734	33.333	0.00	0.00	39.19	2.24
3325	3743	9.256228	TGAGAAATCACTAGTTCACCTACTATT	57.744	33.333	0.00	0.00	32.11	1.73
3411	3829	7.794041	TCCTTGTTTGGTTTACAACTCTACTA	58.206	34.615	0.00	0.00	39.19	1.82
3486	4017	4.390909	GCCTCCGTTTCGAAAAAGAATCTA	59.609	41.667	13.10	0.00	0.00	1.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.