Multiple sequence alignment - TraesCS3D01G317500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G317500 chr3D 100.000 4301 0 0 1 4301 430362006 430357706 0.000000e+00 7943
1 TraesCS3D01G317500 chr3D 97.569 946 15 5 1 940 426067731 426068674 0.000000e+00 1613
2 TraesCS3D01G317500 chr3D 97.564 944 16 4 1 938 582573631 582574573 0.000000e+00 1609
3 TraesCS3D01G317500 chr3D 90.909 77 7 0 3711 3787 381192120 381192044 2.120000e-18 104
4 TraesCS3D01G317500 chr3B 92.881 2669 138 19 972 3613 562777621 562774978 0.000000e+00 3829
5 TraesCS3D01G317500 chr3B 88.443 424 32 8 3809 4219 562761986 562761567 2.990000e-136 496
6 TraesCS3D01G317500 chr3B 91.713 181 11 1 3611 3787 562774913 562774733 9.240000e-62 248
7 TraesCS3D01G317500 chr3A 94.374 2293 78 15 972 3251 568446509 568444255 0.000000e+00 3472
8 TraesCS3D01G317500 chr3A 92.572 552 32 5 3238 3787 568418489 568417945 0.000000e+00 784
9 TraesCS3D01G317500 chr3A 82.118 425 36 19 3809 4219 568399315 568398917 1.150000e-85 327
10 TraesCS3D01G317500 chrUn 98.201 945 11 3 1 940 30247298 30248241 0.000000e+00 1646
11 TraesCS3D01G317500 chr5D 97.879 943 15 2 1 938 469436293 469435351 0.000000e+00 1626
12 TraesCS3D01G317500 chr5D 97.566 945 15 4 1 938 550609990 550610933 0.000000e+00 1611
13 TraesCS3D01G317500 chr1D 97.775 944 13 5 1 939 62366233 62367173 0.000000e+00 1620
14 TraesCS3D01G317500 chr2D 97.564 944 17 3 1 938 33253972 33253029 0.000000e+00 1611
15 TraesCS3D01G317500 chr7D 97.561 943 18 2 1 938 64982265 64981323 0.000000e+00 1609
16 TraesCS3D01G317500 chr6D 97.458 944 16 5 1 938 19380485 19381426 0.000000e+00 1604
17 TraesCS3D01G317500 chr7B 89.610 77 8 0 3711 3787 508270272 508270196 9.840000e-17 99
18 TraesCS3D01G317500 chr6B 89.610 77 8 0 3711 3787 473807288 473807364 9.840000e-17 99
19 TraesCS3D01G317500 chr6B 89.610 77 8 0 3711 3787 485147966 485147890 9.840000e-17 99
20 TraesCS3D01G317500 chr5B 89.610 77 8 0 3711 3787 449780849 449780773 9.840000e-17 99
21 TraesCS3D01G317500 chr5A 89.610 77 8 0 3711 3787 26945775 26945851 9.840000e-17 99
22 TraesCS3D01G317500 chr1B 89.610 77 8 0 3711 3787 193458207 193458131 9.840000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G317500 chr3D 430357706 430362006 4300 True 7943.0 7943 100.000 1 4301 1 chr3D.!!$R2 4300
1 TraesCS3D01G317500 chr3D 426067731 426068674 943 False 1613.0 1613 97.569 1 940 1 chr3D.!!$F1 939
2 TraesCS3D01G317500 chr3D 582573631 582574573 942 False 1609.0 1609 97.564 1 938 1 chr3D.!!$F2 937
3 TraesCS3D01G317500 chr3B 562774733 562777621 2888 True 2038.5 3829 92.297 972 3787 2 chr3B.!!$R2 2815
4 TraesCS3D01G317500 chr3A 568444255 568446509 2254 True 3472.0 3472 94.374 972 3251 1 chr3A.!!$R3 2279
5 TraesCS3D01G317500 chr3A 568417945 568418489 544 True 784.0 784 92.572 3238 3787 1 chr3A.!!$R2 549
6 TraesCS3D01G317500 chrUn 30247298 30248241 943 False 1646.0 1646 98.201 1 940 1 chrUn.!!$F1 939
7 TraesCS3D01G317500 chr5D 469435351 469436293 942 True 1626.0 1626 97.879 1 938 1 chr5D.!!$R1 937
8 TraesCS3D01G317500 chr5D 550609990 550610933 943 False 1611.0 1611 97.566 1 938 1 chr5D.!!$F1 937
9 TraesCS3D01G317500 chr1D 62366233 62367173 940 False 1620.0 1620 97.775 1 939 1 chr1D.!!$F1 938
10 TraesCS3D01G317500 chr2D 33253029 33253972 943 True 1611.0 1611 97.564 1 938 1 chr2D.!!$R1 937
11 TraesCS3D01G317500 chr7D 64981323 64982265 942 True 1609.0 1609 97.561 1 938 1 chr7D.!!$R1 937
12 TraesCS3D01G317500 chr6D 19380485 19381426 941 False 1604.0 1604 97.458 1 938 1 chr6D.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 636 0.037697 GTGTGTACACGATGGCTCCA 60.038 55.0 20.61 0.0 37.10 3.86 F
1533 1552 0.179134 GTGCTTCAGGACGATACGCT 60.179 55.0 0.00 0.0 0.00 5.07 F
1614 1633 0.749454 ATGAGCAATCCGTTCAGGGC 60.749 55.0 0.00 0.0 38.35 5.19 F
1759 1778 2.005960 GCCAGTCGTCGACCAGCTAT 62.006 60.0 21.40 0.0 32.18 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1569 0.179084 TGAGCTCGAAATAAGGGCCG 60.179 55.0 9.64 0.0 0.0 6.13 R
2426 2453 0.251165 AATTGGAACGGTGGTGAGGG 60.251 55.0 0.00 0.0 0.0 4.30 R
2515 2542 0.460311 ATCGGTCTAAAGTGCGAGGG 59.540 55.0 0.00 0.0 0.0 4.30 R
3651 3762 0.984230 TGGCAAGGTAAGAGGAGGTG 59.016 55.0 0.00 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 0.836606 TTCAACTGTCAGGTGAGCCA 59.163 50.000 19.65 3.69 43.74 4.75
331 336 0.591170 CGACGAAACTGGCATGGTTT 59.409 50.000 4.71 4.71 39.25 3.27
570 577 6.038356 GCTTACCAGGAATGATGTGATTTTG 58.962 40.000 0.00 0.00 0.00 2.44
629 636 0.037697 GTGTGTACACGATGGCTCCA 60.038 55.000 20.61 0.00 37.10 3.86
956 965 6.510879 AAAAATGAATCGGGACTAAAGGTC 57.489 37.500 0.00 0.00 43.79 3.85
969 978 6.111669 GACTAAAGGTCCTTTTCTACTGGT 57.888 41.667 21.88 4.85 38.93 4.00
970 979 5.866207 ACTAAAGGTCCTTTTCTACTGGTG 58.134 41.667 21.88 4.84 35.21 4.17
971 980 4.790718 AAAGGTCCTTTTCTACTGGTGT 57.209 40.909 11.33 0.00 28.27 4.16
972 981 4.790718 AAGGTCCTTTTCTACTGGTGTT 57.209 40.909 0.00 0.00 0.00 3.32
973 982 4.790718 AGGTCCTTTTCTACTGGTGTTT 57.209 40.909 0.00 0.00 0.00 2.83
974 983 4.461198 AGGTCCTTTTCTACTGGTGTTTG 58.539 43.478 0.00 0.00 0.00 2.93
975 984 4.079958 AGGTCCTTTTCTACTGGTGTTTGT 60.080 41.667 0.00 0.00 0.00 2.83
976 985 4.275196 GGTCCTTTTCTACTGGTGTTTGTC 59.725 45.833 0.00 0.00 0.00 3.18
998 1007 0.622665 CCTTCCAATGGTCAGCCTCT 59.377 55.000 0.00 0.00 35.27 3.69
999 1008 1.407989 CCTTCCAATGGTCAGCCTCTC 60.408 57.143 0.00 0.00 35.27 3.20
1081 1092 3.312736 ACTCAGATTCCCCTCTCTCTC 57.687 52.381 0.00 0.00 0.00 3.20
1122 1133 4.122337 TCCAACCTACTTCTACACCTCA 57.878 45.455 0.00 0.00 0.00 3.86
1123 1134 4.485875 TCCAACCTACTTCTACACCTCAA 58.514 43.478 0.00 0.00 0.00 3.02
1124 1135 4.903049 TCCAACCTACTTCTACACCTCAAA 59.097 41.667 0.00 0.00 0.00 2.69
1125 1136 4.995487 CCAACCTACTTCTACACCTCAAAC 59.005 45.833 0.00 0.00 0.00 2.93
1126 1137 5.221661 CCAACCTACTTCTACACCTCAAACT 60.222 44.000 0.00 0.00 0.00 2.66
1127 1138 5.725325 ACCTACTTCTACACCTCAAACTC 57.275 43.478 0.00 0.00 0.00 3.01
1128 1139 4.527427 ACCTACTTCTACACCTCAAACTCC 59.473 45.833 0.00 0.00 0.00 3.85
1129 1140 4.081586 CCTACTTCTACACCTCAAACTCCC 60.082 50.000 0.00 0.00 0.00 4.30
1130 1141 3.588569 ACTTCTACACCTCAAACTCCCT 58.411 45.455 0.00 0.00 0.00 4.20
1131 1142 3.579151 ACTTCTACACCTCAAACTCCCTC 59.421 47.826 0.00 0.00 0.00 4.30
1292 1303 1.512310 CGGAGTCGACGAGCTCAAC 60.512 63.158 15.40 5.80 39.00 3.18
1335 1346 3.490078 GGAGCAGCAGTACTATCACTCAC 60.490 52.174 13.83 4.04 0.00 3.51
1409 1420 1.602377 GCACGCCTTCTTGTAAGTTGT 59.398 47.619 0.00 0.00 0.00 3.32
1458 1477 0.742505 CCGTGCGGATGACTAAGGTA 59.257 55.000 4.35 0.00 37.50 3.08
1464 1483 1.674441 CGGATGACTAAGGTACTCGCA 59.326 52.381 0.00 0.00 38.49 5.10
1522 1541 1.871772 CTTCCAAGCCGTGCTTCAG 59.128 57.895 7.99 4.17 46.77 3.02
1533 1552 0.179134 GTGCTTCAGGACGATACGCT 60.179 55.000 0.00 0.00 0.00 5.07
1614 1633 0.749454 ATGAGCAATCCGTTCAGGGC 60.749 55.000 0.00 0.00 38.35 5.19
1615 1634 2.436646 AGCAATCCGTTCAGGGCG 60.437 61.111 0.00 0.00 41.52 6.13
1699 1718 2.632377 CCACTGCAAGGTATGTTCGAT 58.368 47.619 0.00 0.00 39.30 3.59
1701 1720 3.804325 CCACTGCAAGGTATGTTCGATAG 59.196 47.826 0.00 0.00 39.30 2.08
1747 1766 3.636231 TTGGGGGAGTGCCAGTCG 61.636 66.667 1.97 0.00 35.15 4.18
1750 1769 4.436998 GGGGAGTGCCAGTCGTCG 62.437 72.222 1.97 0.00 35.15 5.12
1759 1778 2.005960 GCCAGTCGTCGACCAGCTAT 62.006 60.000 21.40 0.00 32.18 2.97
2218 2245 5.127845 TGCATTTCAGGGTCACTTTTTGTTA 59.872 36.000 0.00 0.00 0.00 2.41
2256 2283 3.305064 GGTGTTTTCCTTTTGCGAGCATA 60.305 43.478 0.00 0.00 0.00 3.14
2390 2417 3.756434 TCTCGCCTTTTGGAAAGGTATTG 59.244 43.478 17.94 8.35 44.07 1.90
2426 2453 5.163364 TGCTCTGAATCAACTCCCTATCTTC 60.163 44.000 0.00 0.00 0.00 2.87
2515 2542 2.202566 GACCTAACTTATCGCTGGTGC 58.797 52.381 0.00 0.00 0.00 5.01
2605 2636 1.227853 AAGTTGCGGTGAGTGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
2630 2661 1.681327 CATGCCTTCCCTTGCTGCT 60.681 57.895 0.00 0.00 0.00 4.24
2672 2707 4.905866 CGGAACATCGCTTATAAATTGCTG 59.094 41.667 0.00 0.00 0.00 4.41
2758 2793 4.134563 GTTCCAGCAGAAGGTAAGAAACA 58.865 43.478 0.00 0.00 34.29 2.83
2759 2794 4.640771 TCCAGCAGAAGGTAAGAAACAT 57.359 40.909 0.00 0.00 0.00 2.71
2760 2795 4.326826 TCCAGCAGAAGGTAAGAAACATG 58.673 43.478 0.00 0.00 0.00 3.21
2761 2796 4.041567 TCCAGCAGAAGGTAAGAAACATGA 59.958 41.667 0.00 0.00 0.00 3.07
2762 2797 4.394300 CCAGCAGAAGGTAAGAAACATGAG 59.606 45.833 0.00 0.00 0.00 2.90
2798 2833 3.438781 TGTCCATCTTATGTTTCCGTTGC 59.561 43.478 0.00 0.00 0.00 4.17
2802 2837 1.463056 TCTTATGTTTCCGTTGCTGCG 59.537 47.619 0.00 0.00 0.00 5.18
2857 2892 2.799540 GAATGCGAAGGACGACGGC 61.800 63.158 0.00 0.00 45.77 5.68
3044 3079 5.283717 CACGTGCTAAGAAATTTGTACATGC 59.716 40.000 0.82 0.00 0.00 4.06
3080 3115 3.560636 ACACAGTGTTGAGGCTAAAGT 57.439 42.857 0.00 0.00 0.00 2.66
3421 3464 9.481800 GTAGTTTTTAAGGACGTATATTTGTGC 57.518 33.333 0.00 0.00 0.00 4.57
3452 3496 3.181470 TGACAGTCGAAGTGTGGAATTCA 60.181 43.478 7.93 0.00 30.64 2.57
3651 3762 3.775654 CCCTCCAGAGCCACCGAC 61.776 72.222 0.00 0.00 0.00 4.79
3730 3845 5.181748 ACTCTAGTGGTTGAGAATTGCATC 58.818 41.667 0.00 0.00 34.65 3.91
3735 3850 5.263599 AGTGGTTGAGAATTGCATCCATTA 58.736 37.500 9.64 0.00 37.43 1.90
3769 3884 2.168728 GAGAATAGGGTGAGCCTTCGTT 59.831 50.000 9.14 1.70 34.45 3.85
3787 3902 0.310543 TTGTGTTCATGTGCCTTCGC 59.689 50.000 0.00 0.00 0.00 4.70
3788 3903 0.817229 TGTGTTCATGTGCCTTCGCA 60.817 50.000 0.00 0.00 44.78 5.10
3798 3913 1.598882 TGCCTTCGCAATGTTGTACA 58.401 45.000 0.00 0.00 43.74 2.90
3799 3914 2.158559 TGCCTTCGCAATGTTGTACAT 58.841 42.857 0.00 0.00 43.74 2.29
3800 3915 2.095314 TGCCTTCGCAATGTTGTACATG 60.095 45.455 0.00 0.00 43.74 3.21
3801 3916 2.095263 GCCTTCGCAATGTTGTACATGT 60.095 45.455 2.69 2.69 37.97 3.21
3802 3917 3.491356 CCTTCGCAATGTTGTACATGTG 58.509 45.455 9.11 0.00 37.97 3.21
3803 3918 3.188254 CCTTCGCAATGTTGTACATGTGA 59.812 43.478 9.11 6.38 37.97 3.58
3804 3919 3.804518 TCGCAATGTTGTACATGTGAC 57.195 42.857 9.11 5.29 37.97 3.67
3805 3920 3.134458 TCGCAATGTTGTACATGTGACA 58.866 40.909 9.11 10.97 37.97 3.58
3806 3921 3.186205 TCGCAATGTTGTACATGTGACAG 59.814 43.478 9.11 1.86 37.97 3.51
3807 3922 3.667695 CGCAATGTTGTACATGTGACAGG 60.668 47.826 9.11 0.00 37.97 4.00
3808 3923 3.366273 GCAATGTTGTACATGTGACAGGG 60.366 47.826 9.11 8.03 37.97 4.45
3809 3924 1.890876 TGTTGTACATGTGACAGGGC 58.109 50.000 9.11 0.00 0.00 5.19
3810 3925 1.419762 TGTTGTACATGTGACAGGGCT 59.580 47.619 9.11 0.00 0.00 5.19
3811 3926 2.635427 TGTTGTACATGTGACAGGGCTA 59.365 45.455 9.11 0.00 0.00 3.93
3812 3927 3.262420 GTTGTACATGTGACAGGGCTAG 58.738 50.000 9.11 0.00 0.00 3.42
3813 3928 2.815158 TGTACATGTGACAGGGCTAGA 58.185 47.619 9.11 0.00 0.00 2.43
3814 3929 2.496070 TGTACATGTGACAGGGCTAGAC 59.504 50.000 9.11 0.00 0.00 2.59
3815 3930 1.944177 ACATGTGACAGGGCTAGACT 58.056 50.000 1.27 0.00 0.00 3.24
3816 3931 2.260822 ACATGTGACAGGGCTAGACTT 58.739 47.619 1.27 0.00 0.00 3.01
3817 3932 2.639839 ACATGTGACAGGGCTAGACTTT 59.360 45.455 1.27 0.00 0.00 2.66
3818 3933 3.838317 ACATGTGACAGGGCTAGACTTTA 59.162 43.478 1.27 0.00 0.00 1.85
3819 3934 3.955650 TGTGACAGGGCTAGACTTTAC 57.044 47.619 0.00 0.00 0.00 2.01
3820 3935 2.565834 TGTGACAGGGCTAGACTTTACC 59.434 50.000 0.00 0.00 0.00 2.85
3821 3936 2.565834 GTGACAGGGCTAGACTTTACCA 59.434 50.000 0.00 0.00 0.00 3.25
3822 3937 3.197983 GTGACAGGGCTAGACTTTACCAT 59.802 47.826 0.00 0.00 0.00 3.55
3823 3938 3.844211 TGACAGGGCTAGACTTTACCATT 59.156 43.478 0.00 0.00 0.00 3.16
3824 3939 5.027460 TGACAGGGCTAGACTTTACCATTA 58.973 41.667 0.00 0.00 0.00 1.90
3825 3940 5.128827 TGACAGGGCTAGACTTTACCATTAG 59.871 44.000 0.00 0.00 0.00 1.73
3826 3941 5.278061 ACAGGGCTAGACTTTACCATTAGA 58.722 41.667 0.00 0.00 0.00 2.10
3827 3942 5.364157 ACAGGGCTAGACTTTACCATTAGAG 59.636 44.000 0.00 0.00 0.00 2.43
3828 3943 4.902448 AGGGCTAGACTTTACCATTAGAGG 59.098 45.833 0.00 0.00 0.00 3.69
3829 3944 4.040584 GGGCTAGACTTTACCATTAGAGGG 59.959 50.000 0.00 0.00 0.00 4.30
3830 3945 4.654724 GGCTAGACTTTACCATTAGAGGGT 59.345 45.833 0.00 0.00 42.48 4.34
3831 3946 5.453480 GGCTAGACTTTACCATTAGAGGGTG 60.453 48.000 0.00 0.00 39.48 4.61
3832 3947 5.363005 GCTAGACTTTACCATTAGAGGGTGA 59.637 44.000 0.00 0.00 39.48 4.02
3833 3948 6.127140 GCTAGACTTTACCATTAGAGGGTGAA 60.127 42.308 0.00 0.00 39.48 3.18
3834 3949 6.893020 AGACTTTACCATTAGAGGGTGAAT 57.107 37.500 0.00 0.00 39.48 2.57
3835 3950 7.272144 AGACTTTACCATTAGAGGGTGAATT 57.728 36.000 0.00 0.00 39.48 2.17
3836 3951 7.699878 AGACTTTACCATTAGAGGGTGAATTT 58.300 34.615 0.00 0.00 39.48 1.82
3837 3952 7.611855 AGACTTTACCATTAGAGGGTGAATTTG 59.388 37.037 0.00 0.00 39.48 2.32
3838 3953 7.466804 ACTTTACCATTAGAGGGTGAATTTGA 58.533 34.615 0.00 0.00 39.48 2.69
3839 3954 7.611855 ACTTTACCATTAGAGGGTGAATTTGAG 59.388 37.037 0.00 0.00 39.48 3.02
3840 3955 4.273318 ACCATTAGAGGGTGAATTTGAGC 58.727 43.478 0.00 0.00 37.23 4.26
3841 3956 3.313526 CCATTAGAGGGTGAATTTGAGCG 59.686 47.826 0.00 0.00 0.00 5.03
3842 3957 2.691409 TAGAGGGTGAATTTGAGCGG 57.309 50.000 0.00 0.00 0.00 5.52
3843 3958 0.678048 AGAGGGTGAATTTGAGCGGC 60.678 55.000 0.00 0.00 0.00 6.53
3844 3959 1.657751 GAGGGTGAATTTGAGCGGCC 61.658 60.000 0.00 0.00 0.00 6.13
3845 3960 2.710902 GGGTGAATTTGAGCGGCCC 61.711 63.158 0.00 0.00 0.00 5.80
3846 3961 2.710902 GGTGAATTTGAGCGGCCCC 61.711 63.158 0.00 0.00 0.00 5.80
3847 3962 1.976474 GTGAATTTGAGCGGCCCCA 60.976 57.895 0.00 0.00 0.00 4.96
3848 3963 1.976474 TGAATTTGAGCGGCCCCAC 60.976 57.895 0.00 0.00 0.00 4.61
3849 3964 1.678970 GAATTTGAGCGGCCCCACT 60.679 57.895 0.00 0.00 0.00 4.00
3850 3965 1.657751 GAATTTGAGCGGCCCCACTC 61.658 60.000 0.00 2.20 0.00 3.51
3851 3966 2.424842 AATTTGAGCGGCCCCACTCA 62.425 55.000 12.51 12.51 41.06 3.41
3852 3967 2.215451 ATTTGAGCGGCCCCACTCAT 62.215 55.000 16.18 2.79 42.26 2.90
3853 3968 1.558167 TTTGAGCGGCCCCACTCATA 61.558 55.000 16.18 10.33 42.26 2.15
3854 3969 1.344953 TTGAGCGGCCCCACTCATAT 61.345 55.000 16.18 0.00 42.26 1.78
3855 3970 1.344953 TGAGCGGCCCCACTCATATT 61.345 55.000 12.51 0.00 37.99 1.28
3856 3971 0.886490 GAGCGGCCCCACTCATATTG 60.886 60.000 9.61 0.00 32.98 1.90
3857 3972 1.152963 GCGGCCCCACTCATATTGT 60.153 57.895 0.00 0.00 0.00 2.71
3858 3973 0.751643 GCGGCCCCACTCATATTGTT 60.752 55.000 0.00 0.00 0.00 2.83
3859 3974 1.762708 CGGCCCCACTCATATTGTTT 58.237 50.000 0.00 0.00 0.00 2.83
3860 3975 2.099405 CGGCCCCACTCATATTGTTTT 58.901 47.619 0.00 0.00 0.00 2.43
3861 3976 2.495669 CGGCCCCACTCATATTGTTTTT 59.504 45.455 0.00 0.00 0.00 1.94
3921 4036 7.817910 TTTTTAGGTTTAGAGATAGGGTCCA 57.182 36.000 0.00 0.00 0.00 4.02
3922 4037 7.817910 TTTTAGGTTTAGAGATAGGGTCCAA 57.182 36.000 0.00 0.00 0.00 3.53
3923 4038 8.401955 TTTTAGGTTTAGAGATAGGGTCCAAT 57.598 34.615 0.00 0.00 0.00 3.16
3924 4039 8.401955 TTTAGGTTTAGAGATAGGGTCCAATT 57.598 34.615 0.00 0.00 0.00 2.32
3925 4040 6.253946 AGGTTTAGAGATAGGGTCCAATTG 57.746 41.667 0.00 0.00 0.00 2.32
3926 4041 5.731678 AGGTTTAGAGATAGGGTCCAATTGT 59.268 40.000 4.43 0.00 0.00 2.71
3927 4042 6.217693 AGGTTTAGAGATAGGGTCCAATTGTT 59.782 38.462 4.43 0.00 0.00 2.83
3928 4043 6.890268 GGTTTAGAGATAGGGTCCAATTGTTT 59.110 38.462 4.43 0.00 0.00 2.83
3929 4044 7.396339 GGTTTAGAGATAGGGTCCAATTGTTTT 59.604 37.037 4.43 0.00 0.00 2.43
3930 4045 8.803235 GTTTAGAGATAGGGTCCAATTGTTTTT 58.197 33.333 4.43 0.00 0.00 1.94
3932 4047 9.681062 TTAGAGATAGGGTCCAATTGTTTTTAG 57.319 33.333 4.43 0.00 0.00 1.85
3933 4048 7.119387 AGAGATAGGGTCCAATTGTTTTTAGG 58.881 38.462 4.43 0.00 0.00 2.69
3934 4049 6.194967 AGATAGGGTCCAATTGTTTTTAGGG 58.805 40.000 4.43 0.00 0.00 3.53
3935 4050 4.207698 AGGGTCCAATTGTTTTTAGGGT 57.792 40.909 4.43 0.00 0.00 4.34
3936 4051 4.562767 AGGGTCCAATTGTTTTTAGGGTT 58.437 39.130 4.43 0.00 0.00 4.11
3937 4052 4.346709 AGGGTCCAATTGTTTTTAGGGTTG 59.653 41.667 4.43 0.00 0.00 3.77
3938 4053 4.345547 GGGTCCAATTGTTTTTAGGGTTGA 59.654 41.667 4.43 0.00 0.00 3.18
3939 4054 5.163290 GGGTCCAATTGTTTTTAGGGTTGAA 60.163 40.000 4.43 0.00 0.00 2.69
3940 4055 6.350103 GGTCCAATTGTTTTTAGGGTTGAAA 58.650 36.000 4.43 0.00 0.00 2.69
3941 4056 6.995686 GGTCCAATTGTTTTTAGGGTTGAAAT 59.004 34.615 4.43 0.00 0.00 2.17
3942 4057 7.500892 GGTCCAATTGTTTTTAGGGTTGAAATT 59.499 33.333 4.43 0.00 0.00 1.82
3943 4058 9.549078 GTCCAATTGTTTTTAGGGTTGAAATTA 57.451 29.630 4.43 0.00 0.00 1.40
3946 4061 9.824534 CAATTGTTTTTAGGGTTGAAATTATGC 57.175 29.630 0.00 0.00 0.00 3.14
3947 4062 7.971183 TTGTTTTTAGGGTTGAAATTATGCC 57.029 32.000 0.00 0.00 0.00 4.40
3948 4063 7.067496 TGTTTTTAGGGTTGAAATTATGCCA 57.933 32.000 0.00 0.00 0.00 4.92
3949 4064 7.684529 TGTTTTTAGGGTTGAAATTATGCCAT 58.315 30.769 0.00 0.00 0.00 4.40
3950 4065 8.160106 TGTTTTTAGGGTTGAAATTATGCCATT 58.840 29.630 0.00 0.00 0.00 3.16
3951 4066 9.660180 GTTTTTAGGGTTGAAATTATGCCATTA 57.340 29.630 0.00 0.00 0.00 1.90
3956 4071 7.670364 AGGGTTGAAATTATGCCATTATAAGC 58.330 34.615 0.00 0.00 0.00 3.09
3957 4072 7.510343 AGGGTTGAAATTATGCCATTATAAGCT 59.490 33.333 0.00 0.00 0.00 3.74
3958 4073 8.150296 GGGTTGAAATTATGCCATTATAAGCTT 58.850 33.333 3.48 3.48 0.00 3.74
3959 4074 9.196552 GGTTGAAATTATGCCATTATAAGCTTC 57.803 33.333 0.00 0.00 0.00 3.86
3960 4075 9.748708 GTTGAAATTATGCCATTATAAGCTTCA 57.251 29.630 0.00 0.00 32.35 3.02
4043 4158 9.627123 TCCTAAGTATTTAATTGAGGTGAATGG 57.373 33.333 0.00 0.00 0.00 3.16
4044 4159 9.408648 CCTAAGTATTTAATTGAGGTGAATGGT 57.591 33.333 0.00 0.00 0.00 3.55
4052 4167 9.844257 TTTAATTGAGGTGAATGGTTTTTGATT 57.156 25.926 0.00 0.00 0.00 2.57
4053 4168 9.844257 TTAATTGAGGTGAATGGTTTTTGATTT 57.156 25.926 0.00 0.00 0.00 2.17
4055 4170 9.844257 AATTGAGGTGAATGGTTTTTGATTTAA 57.156 25.926 0.00 0.00 0.00 1.52
4056 4171 9.844257 ATTGAGGTGAATGGTTTTTGATTTAAA 57.156 25.926 0.00 0.00 0.00 1.52
4057 4172 8.655651 TGAGGTGAATGGTTTTTGATTTAAAC 57.344 30.769 0.00 0.00 35.31 2.01
4058 4173 8.260818 TGAGGTGAATGGTTTTTGATTTAAACA 58.739 29.630 0.00 0.00 37.25 2.83
4059 4174 9.103861 GAGGTGAATGGTTTTTGATTTAAACAA 57.896 29.630 0.00 0.00 37.25 2.83
4060 4175 9.108284 AGGTGAATGGTTTTTGATTTAAACAAG 57.892 29.630 0.00 0.00 37.25 3.16
4061 4176 8.341903 GGTGAATGGTTTTTGATTTAAACAAGG 58.658 33.333 0.00 0.00 37.25 3.61
4062 4177 8.888716 GTGAATGGTTTTTGATTTAAACAAGGT 58.111 29.630 0.00 0.00 37.25 3.50
4159 4274 7.915293 TTTGAGAGTTACAGAAAAAGTGTCA 57.085 32.000 0.00 0.00 30.27 3.58
4160 4275 7.539712 TTGAGAGTTACAGAAAAAGTGTCAG 57.460 36.000 0.00 0.00 32.92 3.51
4161 4276 6.049149 TGAGAGTTACAGAAAAAGTGTCAGG 58.951 40.000 0.00 0.00 29.24 3.86
4162 4277 5.990668 AGAGTTACAGAAAAAGTGTCAGGT 58.009 37.500 0.00 0.00 0.00 4.00
4163 4278 6.415573 AGAGTTACAGAAAAAGTGTCAGGTT 58.584 36.000 0.00 0.00 0.00 3.50
4164 4279 6.884836 AGAGTTACAGAAAAAGTGTCAGGTTT 59.115 34.615 0.00 0.00 0.00 3.27
4165 4280 6.852664 AGTTACAGAAAAAGTGTCAGGTTTG 58.147 36.000 0.00 0.00 0.00 2.93
4166 4281 6.657541 AGTTACAGAAAAAGTGTCAGGTTTGA 59.342 34.615 0.00 0.00 0.00 2.69
4167 4282 5.975693 ACAGAAAAAGTGTCAGGTTTGAA 57.024 34.783 0.00 0.00 34.49 2.69
4168 4283 5.954335 ACAGAAAAAGTGTCAGGTTTGAAG 58.046 37.500 0.00 0.00 34.49 3.02
4169 4284 5.105756 ACAGAAAAAGTGTCAGGTTTGAAGG 60.106 40.000 0.00 0.00 34.49 3.46
4170 4285 4.402474 AGAAAAAGTGTCAGGTTTGAAGGG 59.598 41.667 0.00 0.00 34.49 3.95
4171 4286 1.692411 AAGTGTCAGGTTTGAAGGGC 58.308 50.000 0.00 0.00 34.49 5.19
4172 4287 0.550914 AGTGTCAGGTTTGAAGGGCA 59.449 50.000 0.00 0.00 34.49 5.36
4173 4288 1.064017 AGTGTCAGGTTTGAAGGGCAA 60.064 47.619 0.00 0.00 34.49 4.52
4174 4289 1.067060 GTGTCAGGTTTGAAGGGCAAC 59.933 52.381 0.00 0.00 35.91 4.17
4175 4290 1.064017 TGTCAGGTTTGAAGGGCAACT 60.064 47.619 0.00 0.00 35.91 3.16
4176 4291 1.609072 GTCAGGTTTGAAGGGCAACTC 59.391 52.381 0.00 0.00 35.91 3.01
4177 4292 1.214175 TCAGGTTTGAAGGGCAACTCA 59.786 47.619 0.00 0.00 35.91 3.41
4178 4293 2.031120 CAGGTTTGAAGGGCAACTCAA 58.969 47.619 0.00 0.00 35.91 3.02
4179 4294 2.430332 CAGGTTTGAAGGGCAACTCAAA 59.570 45.455 4.39 4.39 35.91 2.69
4180 4295 2.430694 AGGTTTGAAGGGCAACTCAAAC 59.569 45.455 20.91 20.91 46.37 2.93
4181 4296 2.430694 GGTTTGAAGGGCAACTCAAACT 59.569 45.455 24.74 0.00 46.33 2.66
4182 4297 3.634910 GGTTTGAAGGGCAACTCAAACTA 59.365 43.478 24.74 1.71 46.33 2.24
4183 4298 4.280929 GGTTTGAAGGGCAACTCAAACTAT 59.719 41.667 24.74 0.00 46.33 2.12
4184 4299 5.221441 GGTTTGAAGGGCAACTCAAACTATT 60.221 40.000 24.74 0.00 46.33 1.73
4185 4300 6.280643 GTTTGAAGGGCAACTCAAACTATTT 58.719 36.000 21.40 0.00 44.75 1.40
4186 4301 6.478512 TTGAAGGGCAACTCAAACTATTTT 57.521 33.333 0.00 0.00 0.00 1.82
4187 4302 5.841810 TGAAGGGCAACTCAAACTATTTTG 58.158 37.500 0.00 0.00 43.17 2.44
4188 4303 7.364232 TTTGAAGGGCAACTCAAACTATTTTGA 60.364 33.333 7.88 7.88 41.50 2.69
4209 4324 9.787532 TTTTGAGAGAGTTACAGAAAAATTGTG 57.212 29.630 0.00 0.00 0.00 3.33
4210 4325 8.731275 TTGAGAGAGTTACAGAAAAATTGTGA 57.269 30.769 0.00 0.00 0.00 3.58
4211 4326 8.908786 TGAGAGAGTTACAGAAAAATTGTGAT 57.091 30.769 0.00 0.00 0.00 3.06
4212 4327 8.777413 TGAGAGAGTTACAGAAAAATTGTGATG 58.223 33.333 0.00 0.00 0.00 3.07
4213 4328 7.588512 AGAGAGTTACAGAAAAATTGTGATGC 58.411 34.615 0.00 0.00 0.00 3.91
4214 4329 7.229306 AGAGAGTTACAGAAAAATTGTGATGCA 59.771 33.333 0.00 0.00 0.00 3.96
4215 4330 7.365741 AGAGTTACAGAAAAATTGTGATGCAG 58.634 34.615 0.00 0.00 0.00 4.41
4216 4331 5.922544 AGTTACAGAAAAATTGTGATGCAGC 59.077 36.000 0.00 0.00 0.00 5.25
4217 4332 4.595762 ACAGAAAAATTGTGATGCAGCT 57.404 36.364 2.53 0.00 0.00 4.24
4218 4333 4.952460 ACAGAAAAATTGTGATGCAGCTT 58.048 34.783 2.53 0.00 0.00 3.74
4219 4334 5.362263 ACAGAAAAATTGTGATGCAGCTTT 58.638 33.333 2.53 0.00 0.00 3.51
4220 4335 5.235616 ACAGAAAAATTGTGATGCAGCTTTG 59.764 36.000 2.53 0.00 0.00 2.77
4221 4336 5.464057 CAGAAAAATTGTGATGCAGCTTTGA 59.536 36.000 2.53 0.00 0.00 2.69
4222 4337 6.147164 CAGAAAAATTGTGATGCAGCTTTGAT 59.853 34.615 2.53 0.00 0.00 2.57
4223 4338 7.329962 CAGAAAAATTGTGATGCAGCTTTGATA 59.670 33.333 2.53 0.00 0.00 2.15
4224 4339 7.874016 AGAAAAATTGTGATGCAGCTTTGATAA 59.126 29.630 2.53 0.00 0.00 1.75
4225 4340 7.591006 AAAATTGTGATGCAGCTTTGATAAG 57.409 32.000 2.53 0.00 34.36 1.73
4226 4341 4.707030 TTGTGATGCAGCTTTGATAAGG 57.293 40.909 2.53 0.00 31.76 2.69
4227 4342 3.954200 TGTGATGCAGCTTTGATAAGGA 58.046 40.909 2.53 0.00 31.76 3.36
4228 4343 4.529897 TGTGATGCAGCTTTGATAAGGAT 58.470 39.130 2.53 0.00 31.76 3.24
4229 4344 4.577693 TGTGATGCAGCTTTGATAAGGATC 59.422 41.667 2.53 0.00 31.76 3.36
4230 4345 4.577693 GTGATGCAGCTTTGATAAGGATCA 59.422 41.667 2.53 0.00 40.45 2.92
4247 4362 4.134933 GATCAAGTAGGGATCCTAGGGT 57.865 50.000 12.58 0.00 36.71 4.34
4248 4363 4.494591 GATCAAGTAGGGATCCTAGGGTT 58.505 47.826 12.58 0.00 36.71 4.11
4249 4364 4.363546 TCAAGTAGGGATCCTAGGGTTT 57.636 45.455 12.58 0.00 36.71 3.27
4250 4365 4.706616 TCAAGTAGGGATCCTAGGGTTTT 58.293 43.478 12.58 0.00 36.71 2.43
4251 4366 5.105853 TCAAGTAGGGATCCTAGGGTTTTT 58.894 41.667 12.58 0.00 36.71 1.94
4252 4367 5.045140 TCAAGTAGGGATCCTAGGGTTTTTG 60.045 44.000 12.58 6.41 36.71 2.44
4253 4368 3.786450 AGTAGGGATCCTAGGGTTTTTGG 59.214 47.826 12.58 0.00 36.71 3.28
4254 4369 1.288037 AGGGATCCTAGGGTTTTTGGC 59.712 52.381 12.58 0.00 28.47 4.52
4255 4370 1.688311 GGGATCCTAGGGTTTTTGGCC 60.688 57.143 12.58 0.00 0.00 5.36
4256 4371 1.688311 GGATCCTAGGGTTTTTGGCCC 60.688 57.143 9.46 0.00 46.43 5.80
4263 4378 2.949177 GGGTTTTTGGCCCAATCTTT 57.051 45.000 0.00 0.00 45.40 2.52
4264 4379 2.778299 GGGTTTTTGGCCCAATCTTTC 58.222 47.619 0.00 0.00 45.40 2.62
4265 4380 2.105649 GGGTTTTTGGCCCAATCTTTCA 59.894 45.455 0.00 0.00 45.40 2.69
4266 4381 3.138304 GGTTTTTGGCCCAATCTTTCAC 58.862 45.455 0.00 0.00 0.00 3.18
4267 4382 2.799978 GTTTTTGGCCCAATCTTTCACG 59.200 45.455 0.00 0.00 0.00 4.35
4268 4383 1.988293 TTTGGCCCAATCTTTCACGA 58.012 45.000 0.00 0.00 0.00 4.35
4269 4384 2.214376 TTGGCCCAATCTTTCACGAT 57.786 45.000 0.00 0.00 0.00 3.73
4270 4385 1.462616 TGGCCCAATCTTTCACGATG 58.537 50.000 0.00 0.00 0.00 3.84
4271 4386 1.004161 TGGCCCAATCTTTCACGATGA 59.996 47.619 0.00 0.00 0.00 2.92
4272 4387 2.091541 GGCCCAATCTTTCACGATGAA 58.908 47.619 0.00 0.00 34.03 2.57
4273 4388 2.689983 GGCCCAATCTTTCACGATGAAT 59.310 45.455 0.00 0.00 36.11 2.57
4274 4389 3.489738 GGCCCAATCTTTCACGATGAATG 60.490 47.826 0.00 0.00 36.11 2.67
4275 4390 3.378112 GCCCAATCTTTCACGATGAATGA 59.622 43.478 14.14 14.14 42.28 2.57
4276 4391 4.037208 GCCCAATCTTTCACGATGAATGAT 59.963 41.667 16.25 16.25 46.56 2.45
4277 4392 5.239306 GCCCAATCTTTCACGATGAATGATA 59.761 40.000 19.47 4.69 44.99 2.15
4278 4393 6.567321 GCCCAATCTTTCACGATGAATGATAG 60.567 42.308 19.47 15.85 44.99 2.08
4279 4394 6.707608 CCCAATCTTTCACGATGAATGATAGA 59.292 38.462 19.47 10.58 44.99 1.98
4280 4395 7.227314 CCCAATCTTTCACGATGAATGATAGAA 59.773 37.037 19.47 0.00 44.99 2.10
4281 4396 8.066595 CCAATCTTTCACGATGAATGATAGAAC 58.933 37.037 19.47 0.00 44.99 3.01
4282 4397 7.721286 ATCTTTCACGATGAATGATAGAACC 57.279 36.000 18.54 0.00 44.37 3.62
4283 4398 6.639563 TCTTTCACGATGAATGATAGAACCA 58.360 36.000 10.23 0.00 36.17 3.67
4284 4399 7.102993 TCTTTCACGATGAATGATAGAACCAA 58.897 34.615 10.23 0.00 36.17 3.67
4285 4400 6.662414 TTCACGATGAATGATAGAACCAAC 57.338 37.500 0.00 0.00 30.26 3.77
4286 4401 5.729510 TCACGATGAATGATAGAACCAACA 58.270 37.500 0.00 0.00 0.00 3.33
4287 4402 5.812127 TCACGATGAATGATAGAACCAACAG 59.188 40.000 0.00 0.00 0.00 3.16
4288 4403 5.812127 CACGATGAATGATAGAACCAACAGA 59.188 40.000 0.00 0.00 0.00 3.41
4289 4404 6.481313 CACGATGAATGATAGAACCAACAGAT 59.519 38.462 0.00 0.00 0.00 2.90
4290 4405 7.653311 CACGATGAATGATAGAACCAACAGATA 59.347 37.037 0.00 0.00 0.00 1.98
4291 4406 8.204160 ACGATGAATGATAGAACCAACAGATAA 58.796 33.333 0.00 0.00 0.00 1.75
4292 4407 8.491152 CGATGAATGATAGAACCAACAGATAAC 58.509 37.037 0.00 0.00 0.00 1.89
4293 4408 9.553064 GATGAATGATAGAACCAACAGATAACT 57.447 33.333 0.00 0.00 0.00 2.24
4294 4409 9.911788 ATGAATGATAGAACCAACAGATAACTT 57.088 29.630 0.00 0.00 0.00 2.66
4295 4410 9.739276 TGAATGATAGAACCAACAGATAACTTT 57.261 29.630 0.00 0.00 0.00 2.66
4296 4411 9.994432 GAATGATAGAACCAACAGATAACTTTG 57.006 33.333 0.00 0.00 0.00 2.77
4297 4412 9.739276 AATGATAGAACCAACAGATAACTTTGA 57.261 29.630 0.00 0.00 0.00 2.69
4298 4413 9.911788 ATGATAGAACCAACAGATAACTTTGAT 57.088 29.630 0.00 0.00 0.00 2.57
4299 4414 9.739276 TGATAGAACCAACAGATAACTTTGATT 57.261 29.630 0.00 0.00 0.00 2.57
4300 4415 9.994432 GATAGAACCAACAGATAACTTTGATTG 57.006 33.333 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.252417 GGGTTTTCTTGTCCTAAAACTTGTTTA 58.748 33.333 9.69 0.00 42.50 2.01
128 129 4.278170 TGCAAGTTCCATCGAAAAATGTCT 59.722 37.500 0.00 0.00 0.00 3.41
570 577 7.856145 AGGAGATGAGACACATTTGTTATTC 57.144 36.000 0.00 0.00 39.56 1.75
629 636 3.900601 CCTCTGCAGGATAGACCAAGTAT 59.099 47.826 15.13 0.00 43.65 2.12
946 955 5.932883 CACCAGTAGAAAAGGACCTTTAGTC 59.067 44.000 19.86 14.24 45.51 2.59
947 956 5.368816 ACACCAGTAGAAAAGGACCTTTAGT 59.631 40.000 19.86 12.23 31.99 2.24
948 957 5.866207 ACACCAGTAGAAAAGGACCTTTAG 58.134 41.667 19.86 6.27 31.99 1.85
949 958 5.899631 ACACCAGTAGAAAAGGACCTTTA 57.100 39.130 19.86 1.69 31.99 1.85
950 959 4.790718 ACACCAGTAGAAAAGGACCTTT 57.209 40.909 14.03 14.03 34.94 3.11
951 960 4.790718 AACACCAGTAGAAAAGGACCTT 57.209 40.909 0.00 0.00 0.00 3.50
952 961 4.079958 ACAAACACCAGTAGAAAAGGACCT 60.080 41.667 0.00 0.00 0.00 3.85
953 962 4.204799 ACAAACACCAGTAGAAAAGGACC 58.795 43.478 0.00 0.00 0.00 4.46
954 963 4.275196 GGACAAACACCAGTAGAAAAGGAC 59.725 45.833 0.00 0.00 0.00 3.85
955 964 4.457466 GGACAAACACCAGTAGAAAAGGA 58.543 43.478 0.00 0.00 0.00 3.36
956 965 3.568430 GGGACAAACACCAGTAGAAAAGG 59.432 47.826 0.00 0.00 0.00 3.11
957 966 3.568430 GGGGACAAACACCAGTAGAAAAG 59.432 47.826 0.00 0.00 42.69 2.27
958 967 3.558033 GGGGACAAACACCAGTAGAAAA 58.442 45.455 0.00 0.00 42.69 2.29
959 968 2.158579 GGGGGACAAACACCAGTAGAAA 60.159 50.000 0.00 0.00 45.54 2.52
960 969 1.422402 GGGGGACAAACACCAGTAGAA 59.578 52.381 0.00 0.00 45.54 2.10
961 970 1.061546 GGGGGACAAACACCAGTAGA 58.938 55.000 0.00 0.00 45.54 2.59
962 971 1.064825 AGGGGGACAAACACCAGTAG 58.935 55.000 0.00 0.00 45.54 2.57
963 972 1.422402 GAAGGGGGACAAACACCAGTA 59.578 52.381 0.00 0.00 45.54 2.74
964 973 0.185175 GAAGGGGGACAAACACCAGT 59.815 55.000 0.00 0.00 45.54 4.00
965 974 0.539669 GGAAGGGGGACAAACACCAG 60.540 60.000 0.00 0.00 45.54 4.00
966 975 1.289982 TGGAAGGGGGACAAACACCA 61.290 55.000 0.00 0.00 45.54 4.17
967 976 0.105913 TTGGAAGGGGGACAAACACC 60.106 55.000 0.00 0.00 42.36 4.16
968 977 1.618343 CATTGGAAGGGGGACAAACAC 59.382 52.381 0.00 0.00 0.00 3.32
969 978 1.482177 CCATTGGAAGGGGGACAAACA 60.482 52.381 0.00 0.00 0.00 2.83
970 979 1.266178 CCATTGGAAGGGGGACAAAC 58.734 55.000 0.00 0.00 0.00 2.93
971 980 0.863956 ACCATTGGAAGGGGGACAAA 59.136 50.000 10.37 0.00 33.25 2.83
972 981 0.407918 GACCATTGGAAGGGGGACAA 59.592 55.000 10.37 0.00 33.25 3.18
973 982 0.774096 TGACCATTGGAAGGGGGACA 60.774 55.000 10.37 0.00 33.25 4.02
974 983 0.034089 CTGACCATTGGAAGGGGGAC 60.034 60.000 10.37 0.00 33.25 4.46
975 984 1.863155 GCTGACCATTGGAAGGGGGA 61.863 60.000 10.37 0.00 33.25 4.81
976 985 1.380380 GCTGACCATTGGAAGGGGG 60.380 63.158 10.37 0.00 33.25 5.40
998 1007 2.248248 CTAGTGGACTTGTGTGAGGGA 58.752 52.381 0.00 0.00 0.00 4.20
999 1008 1.338200 GCTAGTGGACTTGTGTGAGGG 60.338 57.143 0.00 0.00 0.00 4.30
1081 1092 1.056700 ATGGATGGAACGGGGGAGAG 61.057 60.000 0.00 0.00 0.00 3.20
1122 1133 1.202879 TGATGCGGTTTGAGGGAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
1123 1134 0.400213 TGATGCGGTTTGAGGGAGTT 59.600 50.000 0.00 0.00 0.00 3.01
1124 1135 0.400213 TTGATGCGGTTTGAGGGAGT 59.600 50.000 0.00 0.00 0.00 3.85
1125 1136 1.089920 CTTGATGCGGTTTGAGGGAG 58.910 55.000 0.00 0.00 0.00 4.30
1126 1137 0.690192 TCTTGATGCGGTTTGAGGGA 59.310 50.000 0.00 0.00 0.00 4.20
1127 1138 1.672881 GATCTTGATGCGGTTTGAGGG 59.327 52.381 0.00 0.00 0.00 4.30
1128 1139 1.672881 GGATCTTGATGCGGTTTGAGG 59.327 52.381 0.00 0.00 0.00 3.86
1129 1140 1.672881 GGGATCTTGATGCGGTTTGAG 59.327 52.381 0.00 0.00 0.00 3.02
1130 1141 1.281867 AGGGATCTTGATGCGGTTTGA 59.718 47.619 0.00 0.00 0.00 2.69
1131 1142 1.755179 AGGGATCTTGATGCGGTTTG 58.245 50.000 0.00 0.00 0.00 2.93
1335 1346 1.895707 GGCATCGGATGAAGGCTGG 60.896 63.158 21.69 0.00 35.69 4.85
1409 1420 6.633325 AGAAGAAAGATGGAAGATGGAAGA 57.367 37.500 0.00 0.00 0.00 2.87
1464 1483 5.696724 CCGCTCCTAATTAAAACTCGATCAT 59.303 40.000 0.00 0.00 0.00 2.45
1547 1566 2.882366 CTCGAAATAAGGGCCGCGC 61.882 63.158 0.00 0.00 0.00 6.86
1550 1569 0.179084 TGAGCTCGAAATAAGGGCCG 60.179 55.000 9.64 0.00 0.00 6.13
1690 1709 0.677288 CCCCGGTGCTATCGAACATA 59.323 55.000 0.00 0.00 0.00 2.29
1723 1742 3.077907 CACTCCCCCAACACCGAT 58.922 61.111 0.00 0.00 0.00 4.18
1747 1766 2.279517 CCGCCATAGCTGGTCGAC 60.280 66.667 7.13 7.13 45.10 4.20
1750 1769 2.897350 GTGCCGCCATAGCTGGTC 60.897 66.667 0.00 0.00 45.10 4.02
1780 1799 3.491934 CGTCGCCGCTTGATTTAAG 57.508 52.632 0.00 0.00 39.49 1.85
1876 1895 1.950098 GCAAGAGAAGCTGCGACGAC 61.950 60.000 0.00 0.00 0.00 4.34
1991 2010 0.839946 AACCCTAGCTGTATGGCCAG 59.160 55.000 13.05 0.00 35.49 4.85
1992 2011 1.211949 GAAACCCTAGCTGTATGGCCA 59.788 52.381 8.56 8.56 0.00 5.36
2218 2245 0.179100 CACCAGCCATCGATCGAAGT 60.179 55.000 23.50 3.14 0.00 3.01
2256 2283 3.981071 TCCAAAAGTCATCGTCCATCT 57.019 42.857 0.00 0.00 0.00 2.90
2390 2417 4.999950 TGATTCAGAGCAGAAAGAAGAACC 59.000 41.667 0.00 0.00 0.00 3.62
2426 2453 0.251165 AATTGGAACGGTGGTGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
2515 2542 0.460311 ATCGGTCTAAAGTGCGAGGG 59.540 55.000 0.00 0.00 0.00 4.30
2605 2636 2.675889 GCAAGGGAAGGCATGTGATTTG 60.676 50.000 0.00 0.00 0.00 2.32
2672 2707 2.541762 GACTGCAGTGAGTTCAGTGTTC 59.458 50.000 27.27 0.11 46.30 3.18
2798 2833 4.175489 GCATGAGCAGCCACGCAG 62.175 66.667 0.00 0.00 41.58 5.18
2809 2844 2.754946 ACCAAGCAAAATGGCATGAG 57.245 45.000 0.00 0.00 41.89 2.90
2811 2846 2.419021 CCCTACCAAGCAAAATGGCATG 60.419 50.000 0.00 0.00 41.89 4.06
3031 3066 6.849085 TGTAATCTGGGCATGTACAAATTT 57.151 33.333 0.00 0.00 0.00 1.82
3044 3079 5.163561 ACACTGTGTTTGTTTGTAATCTGGG 60.164 40.000 7.80 0.00 0.00 4.45
3080 3115 2.753296 GCAACATGTGGCTTTGCTTTA 58.247 42.857 18.41 0.00 41.98 1.85
3380 3422 6.837471 AAAAACTACCGGTGGCATTATTAA 57.163 33.333 19.93 0.00 0.00 1.40
3381 3423 7.067251 CCTTAAAAACTACCGGTGGCATTATTA 59.933 37.037 19.93 7.68 0.00 0.98
3382 3424 6.127563 CCTTAAAAACTACCGGTGGCATTATT 60.128 38.462 19.93 8.68 0.00 1.40
3383 3425 5.358725 CCTTAAAAACTACCGGTGGCATTAT 59.641 40.000 19.93 3.13 0.00 1.28
3421 3464 3.119628 CACTTCGACTGTCATACACAACG 59.880 47.826 8.73 0.00 36.68 4.10
3476 3520 2.761208 CGTAGAGGGTCCTTTGTCATCT 59.239 50.000 0.00 0.00 0.00 2.90
3488 3532 7.931046 AGTATATCTTTCTATCCGTAGAGGGT 58.069 38.462 0.00 0.00 38.17 4.34
3542 3586 7.703058 AAAGTTTACATAGGAAGTTCCATGG 57.297 36.000 23.87 4.97 39.61 3.66
3584 3628 1.680338 AATAGGAATCCAAGGCGCAC 58.320 50.000 10.83 0.00 0.00 5.34
3639 3750 2.262915 GAGGTGTCGGTGGCTCTG 59.737 66.667 0.00 0.00 0.00 3.35
3651 3762 0.984230 TGGCAAGGTAAGAGGAGGTG 59.016 55.000 0.00 0.00 0.00 4.00
3735 3850 7.251936 TCACCCTATTCTCCTTGAGATATCAT 58.748 38.462 5.32 0.00 38.56 2.45
3769 3884 0.817229 TGCGAAGGCACATGAACACA 60.817 50.000 0.00 0.00 46.21 3.72
3787 3902 3.366273 GCCCTGTCACATGTACAACATTG 60.366 47.826 0.00 0.00 36.53 2.82
3788 3903 2.819608 GCCCTGTCACATGTACAACATT 59.180 45.455 0.00 0.00 36.53 2.71
3789 3904 2.040278 AGCCCTGTCACATGTACAACAT 59.960 45.455 0.00 0.00 39.91 2.71
3790 3905 1.419762 AGCCCTGTCACATGTACAACA 59.580 47.619 0.00 2.85 0.00 3.33
3791 3906 2.185004 AGCCCTGTCACATGTACAAC 57.815 50.000 0.00 0.00 0.00 3.32
3792 3907 3.056107 GTCTAGCCCTGTCACATGTACAA 60.056 47.826 0.00 0.00 0.00 2.41
3793 3908 2.496070 GTCTAGCCCTGTCACATGTACA 59.504 50.000 0.00 0.00 0.00 2.90
3794 3909 2.761208 AGTCTAGCCCTGTCACATGTAC 59.239 50.000 0.00 0.00 0.00 2.90
3795 3910 3.101643 AGTCTAGCCCTGTCACATGTA 57.898 47.619 0.00 0.00 0.00 2.29
3796 3911 1.944177 AGTCTAGCCCTGTCACATGT 58.056 50.000 0.00 0.00 0.00 3.21
3797 3912 3.340814 AAAGTCTAGCCCTGTCACATG 57.659 47.619 0.00 0.00 0.00 3.21
3798 3913 3.197983 GGTAAAGTCTAGCCCTGTCACAT 59.802 47.826 0.00 0.00 0.00 3.21
3799 3914 2.565834 GGTAAAGTCTAGCCCTGTCACA 59.434 50.000 0.00 0.00 0.00 3.58
3800 3915 2.565834 TGGTAAAGTCTAGCCCTGTCAC 59.434 50.000 0.00 0.00 0.00 3.67
3801 3916 2.897350 TGGTAAAGTCTAGCCCTGTCA 58.103 47.619 0.00 0.00 0.00 3.58
3802 3917 4.489306 AATGGTAAAGTCTAGCCCTGTC 57.511 45.455 0.00 0.00 0.00 3.51
3803 3918 5.278061 TCTAATGGTAAAGTCTAGCCCTGT 58.722 41.667 0.00 0.00 0.00 4.00
3804 3919 5.221541 CCTCTAATGGTAAAGTCTAGCCCTG 60.222 48.000 0.00 0.00 0.00 4.45
3805 3920 4.902448 CCTCTAATGGTAAAGTCTAGCCCT 59.098 45.833 0.00 0.00 0.00 5.19
3806 3921 4.040584 CCCTCTAATGGTAAAGTCTAGCCC 59.959 50.000 0.00 0.00 0.00 5.19
3807 3922 4.654724 ACCCTCTAATGGTAAAGTCTAGCC 59.345 45.833 0.00 0.00 33.26 3.93
3808 3923 5.363005 TCACCCTCTAATGGTAAAGTCTAGC 59.637 44.000 0.00 0.00 33.84 3.42
3809 3924 7.419711 TTCACCCTCTAATGGTAAAGTCTAG 57.580 40.000 0.00 0.00 33.84 2.43
3810 3925 7.989947 ATTCACCCTCTAATGGTAAAGTCTA 57.010 36.000 0.00 0.00 33.84 2.59
3811 3926 6.893020 ATTCACCCTCTAATGGTAAAGTCT 57.107 37.500 0.00 0.00 33.84 3.24
3812 3927 7.610305 TCAAATTCACCCTCTAATGGTAAAGTC 59.390 37.037 0.00 0.00 33.84 3.01
3813 3928 7.466804 TCAAATTCACCCTCTAATGGTAAAGT 58.533 34.615 0.00 0.00 33.84 2.66
3814 3929 7.415653 GCTCAAATTCACCCTCTAATGGTAAAG 60.416 40.741 0.00 0.00 33.84 1.85
3815 3930 6.377146 GCTCAAATTCACCCTCTAATGGTAAA 59.623 38.462 0.00 0.00 33.84 2.01
3816 3931 5.885912 GCTCAAATTCACCCTCTAATGGTAA 59.114 40.000 0.00 0.00 33.84 2.85
3817 3932 5.437060 GCTCAAATTCACCCTCTAATGGTA 58.563 41.667 0.00 0.00 33.84 3.25
3818 3933 4.273318 GCTCAAATTCACCCTCTAATGGT 58.727 43.478 0.00 0.00 36.21 3.55
3819 3934 3.313526 CGCTCAAATTCACCCTCTAATGG 59.686 47.826 0.00 0.00 0.00 3.16
3820 3935 3.313526 CCGCTCAAATTCACCCTCTAATG 59.686 47.826 0.00 0.00 0.00 1.90
3821 3936 3.545703 CCGCTCAAATTCACCCTCTAAT 58.454 45.455 0.00 0.00 0.00 1.73
3822 3937 2.939640 GCCGCTCAAATTCACCCTCTAA 60.940 50.000 0.00 0.00 0.00 2.10
3823 3938 1.406887 GCCGCTCAAATTCACCCTCTA 60.407 52.381 0.00 0.00 0.00 2.43
3824 3939 0.678048 GCCGCTCAAATTCACCCTCT 60.678 55.000 0.00 0.00 0.00 3.69
3825 3940 1.657751 GGCCGCTCAAATTCACCCTC 61.658 60.000 0.00 0.00 0.00 4.30
3826 3941 1.678970 GGCCGCTCAAATTCACCCT 60.679 57.895 0.00 0.00 0.00 4.34
3827 3942 2.710902 GGGCCGCTCAAATTCACCC 61.711 63.158 0.00 0.00 0.00 4.61
3828 3943 2.710902 GGGGCCGCTCAAATTCACC 61.711 63.158 13.57 0.00 0.00 4.02
3829 3944 1.976474 TGGGGCCGCTCAAATTCAC 60.976 57.895 21.80 0.00 0.00 3.18
3830 3945 1.976474 GTGGGGCCGCTCAAATTCA 60.976 57.895 21.80 0.00 0.00 2.57
3831 3946 1.678970 AGTGGGGCCGCTCAAATTC 60.679 57.895 21.80 3.08 29.87 2.17
3832 3947 2.440599 AGTGGGGCCGCTCAAATT 59.559 55.556 21.80 0.00 29.87 1.82
3838 3953 1.149174 CAATATGAGTGGGGCCGCT 59.851 57.895 21.80 7.11 39.77 5.52
3839 3954 0.751643 AACAATATGAGTGGGGCCGC 60.752 55.000 14.01 14.01 0.00 6.53
3840 3955 1.762708 AAACAATATGAGTGGGGCCG 58.237 50.000 0.00 0.00 0.00 6.13
3897 4012 7.817910 TGGACCCTATCTCTAAACCTAAAAA 57.182 36.000 0.00 0.00 0.00 1.94
3898 4013 7.817910 TTGGACCCTATCTCTAAACCTAAAA 57.182 36.000 0.00 0.00 0.00 1.52
3899 4014 8.272173 CAATTGGACCCTATCTCTAAACCTAAA 58.728 37.037 0.00 0.00 0.00 1.85
3900 4015 7.404980 ACAATTGGACCCTATCTCTAAACCTAA 59.595 37.037 10.83 0.00 0.00 2.69
3901 4016 6.906901 ACAATTGGACCCTATCTCTAAACCTA 59.093 38.462 10.83 0.00 0.00 3.08
3902 4017 5.731678 ACAATTGGACCCTATCTCTAAACCT 59.268 40.000 10.83 0.00 0.00 3.50
3903 4018 6.002653 ACAATTGGACCCTATCTCTAAACC 57.997 41.667 10.83 0.00 0.00 3.27
3904 4019 7.939784 AAACAATTGGACCCTATCTCTAAAC 57.060 36.000 10.83 0.00 0.00 2.01
3905 4020 8.950007 AAAAACAATTGGACCCTATCTCTAAA 57.050 30.769 10.83 0.00 0.00 1.85
3906 4021 9.681062 CTAAAAACAATTGGACCCTATCTCTAA 57.319 33.333 10.83 0.00 0.00 2.10
3907 4022 8.272173 CCTAAAAACAATTGGACCCTATCTCTA 58.728 37.037 10.83 0.00 0.00 2.43
3908 4023 7.119387 CCTAAAAACAATTGGACCCTATCTCT 58.881 38.462 10.83 0.00 0.00 3.10
3909 4024 6.321435 CCCTAAAAACAATTGGACCCTATCTC 59.679 42.308 10.83 0.00 0.00 2.75
3910 4025 6.194967 CCCTAAAAACAATTGGACCCTATCT 58.805 40.000 10.83 0.00 0.00 1.98
3911 4026 5.955959 ACCCTAAAAACAATTGGACCCTATC 59.044 40.000 10.83 0.00 0.00 2.08
3912 4027 5.910931 ACCCTAAAAACAATTGGACCCTAT 58.089 37.500 10.83 0.00 0.00 2.57
3913 4028 5.342361 ACCCTAAAAACAATTGGACCCTA 57.658 39.130 10.83 0.00 0.00 3.53
3914 4029 4.207698 ACCCTAAAAACAATTGGACCCT 57.792 40.909 10.83 0.00 0.00 4.34
3915 4030 4.345547 TCAACCCTAAAAACAATTGGACCC 59.654 41.667 10.83 0.00 0.00 4.46
3916 4031 5.538849 TCAACCCTAAAAACAATTGGACC 57.461 39.130 10.83 0.00 0.00 4.46
3917 4032 8.445275 AATTTCAACCCTAAAAACAATTGGAC 57.555 30.769 10.83 0.00 0.00 4.02
3920 4035 9.824534 GCATAATTTCAACCCTAAAAACAATTG 57.175 29.630 3.24 3.24 0.00 2.32
3921 4036 9.008965 GGCATAATTTCAACCCTAAAAACAATT 57.991 29.630 0.00 0.00 0.00 2.32
3922 4037 8.160106 TGGCATAATTTCAACCCTAAAAACAAT 58.840 29.630 0.00 0.00 0.00 2.71
3923 4038 7.509546 TGGCATAATTTCAACCCTAAAAACAA 58.490 30.769 0.00 0.00 0.00 2.83
3924 4039 7.067496 TGGCATAATTTCAACCCTAAAAACA 57.933 32.000 0.00 0.00 0.00 2.83
3925 4040 8.560355 AATGGCATAATTTCAACCCTAAAAAC 57.440 30.769 0.00 0.00 0.00 2.43
3930 4045 8.802267 GCTTATAATGGCATAATTTCAACCCTA 58.198 33.333 0.00 0.00 0.00 3.53
3931 4046 7.510343 AGCTTATAATGGCATAATTTCAACCCT 59.490 33.333 0.00 0.00 0.00 4.34
3932 4047 7.670364 AGCTTATAATGGCATAATTTCAACCC 58.330 34.615 0.00 0.00 0.00 4.11
3933 4048 9.196552 GAAGCTTATAATGGCATAATTTCAACC 57.803 33.333 0.00 0.00 0.00 3.77
3934 4049 9.748708 TGAAGCTTATAATGGCATAATTTCAAC 57.251 29.630 0.00 0.00 29.83 3.18
4017 4132 9.627123 CCATTCACCTCAATTAAATACTTAGGA 57.373 33.333 0.00 0.00 0.00 2.94
4018 4133 9.408648 ACCATTCACCTCAATTAAATACTTAGG 57.591 33.333 0.00 0.00 0.00 2.69
4026 4141 9.844257 AATCAAAAACCATTCACCTCAATTAAA 57.156 25.926 0.00 0.00 0.00 1.52
4027 4142 9.844257 AAATCAAAAACCATTCACCTCAATTAA 57.156 25.926 0.00 0.00 0.00 1.40
4029 4144 9.844257 TTAAATCAAAAACCATTCACCTCAATT 57.156 25.926 0.00 0.00 0.00 2.32
4030 4145 9.844257 TTTAAATCAAAAACCATTCACCTCAAT 57.156 25.926 0.00 0.00 0.00 2.57
4031 4146 9.103861 GTTTAAATCAAAAACCATTCACCTCAA 57.896 29.630 0.00 0.00 31.94 3.02
4032 4147 8.260818 TGTTTAAATCAAAAACCATTCACCTCA 58.739 29.630 0.00 0.00 36.26 3.86
4033 4148 8.655651 TGTTTAAATCAAAAACCATTCACCTC 57.344 30.769 0.00 0.00 36.26 3.85
4034 4149 9.108284 CTTGTTTAAATCAAAAACCATTCACCT 57.892 29.630 0.00 0.00 36.26 4.00
4035 4150 8.341903 CCTTGTTTAAATCAAAAACCATTCACC 58.658 33.333 0.00 0.00 36.26 4.02
4036 4151 8.888716 ACCTTGTTTAAATCAAAAACCATTCAC 58.111 29.630 0.00 0.00 36.26 3.18
4133 4248 8.788806 TGACACTTTTTCTGTAACTCTCAAAAA 58.211 29.630 0.00 0.00 0.00 1.94
4134 4249 8.330466 TGACACTTTTTCTGTAACTCTCAAAA 57.670 30.769 0.00 0.00 0.00 2.44
4135 4250 7.065803 CCTGACACTTTTTCTGTAACTCTCAAA 59.934 37.037 0.00 0.00 0.00 2.69
4136 4251 6.538742 CCTGACACTTTTTCTGTAACTCTCAA 59.461 38.462 0.00 0.00 0.00 3.02
4137 4252 6.049149 CCTGACACTTTTTCTGTAACTCTCA 58.951 40.000 0.00 0.00 0.00 3.27
4138 4253 6.049790 ACCTGACACTTTTTCTGTAACTCTC 58.950 40.000 0.00 0.00 0.00 3.20
4139 4254 5.990668 ACCTGACACTTTTTCTGTAACTCT 58.009 37.500 0.00 0.00 0.00 3.24
4140 4255 6.679327 AACCTGACACTTTTTCTGTAACTC 57.321 37.500 0.00 0.00 0.00 3.01
4141 4256 6.657541 TCAAACCTGACACTTTTTCTGTAACT 59.342 34.615 0.00 0.00 0.00 2.24
4142 4257 6.848451 TCAAACCTGACACTTTTTCTGTAAC 58.152 36.000 0.00 0.00 0.00 2.50
4143 4258 7.362574 CCTTCAAACCTGACACTTTTTCTGTAA 60.363 37.037 0.00 0.00 0.00 2.41
4144 4259 6.094881 CCTTCAAACCTGACACTTTTTCTGTA 59.905 38.462 0.00 0.00 0.00 2.74
4145 4260 5.105756 CCTTCAAACCTGACACTTTTTCTGT 60.106 40.000 0.00 0.00 0.00 3.41
4146 4261 5.343249 CCTTCAAACCTGACACTTTTTCTG 58.657 41.667 0.00 0.00 0.00 3.02
4147 4262 4.402474 CCCTTCAAACCTGACACTTTTTCT 59.598 41.667 0.00 0.00 0.00 2.52
4148 4263 4.682787 CCCTTCAAACCTGACACTTTTTC 58.317 43.478 0.00 0.00 0.00 2.29
4149 4264 3.118775 GCCCTTCAAACCTGACACTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
4150 4265 2.430694 GCCCTTCAAACCTGACACTTTT 59.569 45.455 0.00 0.00 0.00 2.27
4151 4266 2.031870 GCCCTTCAAACCTGACACTTT 58.968 47.619 0.00 0.00 0.00 2.66
4152 4267 1.064017 TGCCCTTCAAACCTGACACTT 60.064 47.619 0.00 0.00 0.00 3.16
4153 4268 0.550914 TGCCCTTCAAACCTGACACT 59.449 50.000 0.00 0.00 0.00 3.55
4154 4269 1.067060 GTTGCCCTTCAAACCTGACAC 59.933 52.381 0.00 0.00 36.26 3.67
4155 4270 1.064017 AGTTGCCCTTCAAACCTGACA 60.064 47.619 0.00 0.00 36.26 3.58
4156 4271 1.609072 GAGTTGCCCTTCAAACCTGAC 59.391 52.381 0.00 0.00 36.26 3.51
4157 4272 1.214175 TGAGTTGCCCTTCAAACCTGA 59.786 47.619 0.00 0.00 36.26 3.86
4158 4273 1.691196 TGAGTTGCCCTTCAAACCTG 58.309 50.000 0.00 0.00 36.26 4.00
4159 4274 2.430694 GTTTGAGTTGCCCTTCAAACCT 59.569 45.455 18.68 0.00 43.34 3.50
4160 4275 2.821546 GTTTGAGTTGCCCTTCAAACC 58.178 47.619 18.68 7.63 43.34 3.27
4161 4276 7.254421 CAAAATAGTTTGAGTTGCCCTTCAAAC 60.254 37.037 20.48 20.48 45.99 2.93
4162 4277 6.478512 AAATAGTTTGAGTTGCCCTTCAAA 57.521 33.333 3.38 3.38 36.26 2.69
4163 4278 6.097554 TCAAAATAGTTTGAGTTGCCCTTCAA 59.902 34.615 13.98 0.00 46.48 2.69
4164 4279 5.596361 TCAAAATAGTTTGAGTTGCCCTTCA 59.404 36.000 13.98 0.00 46.48 3.02
4165 4280 6.084326 TCAAAATAGTTTGAGTTGCCCTTC 57.916 37.500 13.98 0.00 46.48 3.46
4183 4298 9.787532 CACAATTTTTCTGTAACTCTCTCAAAA 57.212 29.630 0.00 0.00 0.00 2.44
4184 4299 9.173021 TCACAATTTTTCTGTAACTCTCTCAAA 57.827 29.630 0.00 0.00 0.00 2.69
4185 4300 8.731275 TCACAATTTTTCTGTAACTCTCTCAA 57.269 30.769 0.00 0.00 0.00 3.02
4186 4301 8.777413 CATCACAATTTTTCTGTAACTCTCTCA 58.223 33.333 0.00 0.00 0.00 3.27
4187 4302 7.748241 GCATCACAATTTTTCTGTAACTCTCTC 59.252 37.037 0.00 0.00 0.00 3.20
4188 4303 7.229306 TGCATCACAATTTTTCTGTAACTCTCT 59.771 33.333 0.00 0.00 0.00 3.10
4189 4304 7.362662 TGCATCACAATTTTTCTGTAACTCTC 58.637 34.615 0.00 0.00 0.00 3.20
4190 4305 7.275888 TGCATCACAATTTTTCTGTAACTCT 57.724 32.000 0.00 0.00 0.00 3.24
4191 4306 6.088616 GCTGCATCACAATTTTTCTGTAACTC 59.911 38.462 0.00 0.00 0.00 3.01
4192 4307 5.922544 GCTGCATCACAATTTTTCTGTAACT 59.077 36.000 0.00 0.00 0.00 2.24
4193 4308 5.922544 AGCTGCATCACAATTTTTCTGTAAC 59.077 36.000 1.02 0.00 0.00 2.50
4194 4309 6.088016 AGCTGCATCACAATTTTTCTGTAA 57.912 33.333 1.02 0.00 0.00 2.41
4195 4310 5.710513 AGCTGCATCACAATTTTTCTGTA 57.289 34.783 1.02 0.00 0.00 2.74
4196 4311 4.595762 AGCTGCATCACAATTTTTCTGT 57.404 36.364 1.02 0.00 0.00 3.41
4197 4312 5.464057 TCAAAGCTGCATCACAATTTTTCTG 59.536 36.000 1.02 0.00 0.00 3.02
4198 4313 5.603596 TCAAAGCTGCATCACAATTTTTCT 58.396 33.333 1.02 0.00 0.00 2.52
4199 4314 5.910637 TCAAAGCTGCATCACAATTTTTC 57.089 34.783 1.02 0.00 0.00 2.29
4200 4315 7.118680 CCTTATCAAAGCTGCATCACAATTTTT 59.881 33.333 1.02 0.00 0.00 1.94
4201 4316 6.592607 CCTTATCAAAGCTGCATCACAATTTT 59.407 34.615 1.02 0.00 0.00 1.82
4202 4317 6.071221 TCCTTATCAAAGCTGCATCACAATTT 60.071 34.615 1.02 0.00 0.00 1.82
4203 4318 5.419788 TCCTTATCAAAGCTGCATCACAATT 59.580 36.000 1.02 0.00 0.00 2.32
4204 4319 4.951715 TCCTTATCAAAGCTGCATCACAAT 59.048 37.500 1.02 0.00 0.00 2.71
4205 4320 4.334552 TCCTTATCAAAGCTGCATCACAA 58.665 39.130 1.02 0.00 0.00 3.33
4206 4321 3.954200 TCCTTATCAAAGCTGCATCACA 58.046 40.909 1.02 0.00 0.00 3.58
4207 4322 4.577693 TGATCCTTATCAAAGCTGCATCAC 59.422 41.667 1.02 0.00 39.20 3.06
4208 4323 4.784177 TGATCCTTATCAAAGCTGCATCA 58.216 39.130 1.02 0.00 39.20 3.07
4209 4324 5.762825 TTGATCCTTATCAAAGCTGCATC 57.237 39.130 1.02 0.00 46.64 3.91
4226 4341 4.134933 ACCCTAGGATCCCTACTTGATC 57.865 50.000 11.48 0.00 38.30 2.92
4227 4342 4.578149 AACCCTAGGATCCCTACTTGAT 57.422 45.455 11.48 0.00 34.61 2.57
4228 4343 4.363546 AAACCCTAGGATCCCTACTTGA 57.636 45.455 11.48 0.00 34.61 3.02
4229 4344 5.193679 CAAAAACCCTAGGATCCCTACTTG 58.806 45.833 11.48 0.00 34.61 3.16
4230 4345 4.229812 CCAAAAACCCTAGGATCCCTACTT 59.770 45.833 11.48 0.00 34.61 2.24
4231 4346 3.786450 CCAAAAACCCTAGGATCCCTACT 59.214 47.826 11.48 0.00 34.61 2.57
4232 4347 3.687551 GCCAAAAACCCTAGGATCCCTAC 60.688 52.174 11.48 0.00 34.61 3.18
4233 4348 2.512476 GCCAAAAACCCTAGGATCCCTA 59.488 50.000 11.48 0.00 34.61 3.53
4234 4349 1.288037 GCCAAAAACCCTAGGATCCCT 59.712 52.381 11.48 0.00 37.71 4.20
4235 4350 1.688311 GGCCAAAAACCCTAGGATCCC 60.688 57.143 11.48 0.00 0.00 3.85
4236 4351 1.688311 GGGCCAAAAACCCTAGGATCC 60.688 57.143 11.48 2.48 44.68 3.36
4237 4352 1.776662 GGGCCAAAAACCCTAGGATC 58.223 55.000 11.48 0.00 44.68 3.36
4245 4360 3.138304 GTGAAAGATTGGGCCAAAAACC 58.862 45.455 24.97 12.59 0.00 3.27
4246 4361 2.799978 CGTGAAAGATTGGGCCAAAAAC 59.200 45.455 24.97 16.98 0.00 2.43
4247 4362 2.695666 TCGTGAAAGATTGGGCCAAAAA 59.304 40.909 24.97 0.00 0.00 1.94
4248 4363 2.311463 TCGTGAAAGATTGGGCCAAAA 58.689 42.857 24.97 0.31 0.00 2.44
4249 4364 1.988293 TCGTGAAAGATTGGGCCAAA 58.012 45.000 24.97 0.00 0.00 3.28
4250 4365 1.818060 CATCGTGAAAGATTGGGCCAA 59.182 47.619 23.33 23.33 0.00 4.52
4251 4366 1.004161 TCATCGTGAAAGATTGGGCCA 59.996 47.619 0.00 0.00 0.00 5.36
4252 4367 1.750193 TCATCGTGAAAGATTGGGCC 58.250 50.000 0.00 0.00 0.00 5.80
4253 4368 3.378112 TCATTCATCGTGAAAGATTGGGC 59.622 43.478 4.87 0.00 40.12 5.36
4254 4369 5.762825 ATCATTCATCGTGAAAGATTGGG 57.237 39.130 10.56 0.00 40.58 4.12
4255 4370 7.719778 TCTATCATTCATCGTGAAAGATTGG 57.280 36.000 17.29 12.92 40.58 3.16
4256 4371 8.066595 GGTTCTATCATTCATCGTGAAAGATTG 58.933 37.037 17.29 15.81 40.58 2.67
4257 4372 7.770433 TGGTTCTATCATTCATCGTGAAAGATT 59.230 33.333 17.29 7.69 40.58 2.40
4258 4373 7.275183 TGGTTCTATCATTCATCGTGAAAGAT 58.725 34.615 16.69 16.69 44.12 2.40
4259 4374 6.639563 TGGTTCTATCATTCATCGTGAAAGA 58.360 36.000 7.68 7.68 40.12 2.52
4260 4375 6.908870 TGGTTCTATCATTCATCGTGAAAG 57.091 37.500 4.87 1.79 40.12 2.62
4261 4376 6.652900 TGTTGGTTCTATCATTCATCGTGAAA 59.347 34.615 4.87 0.00 40.12 2.69
4262 4377 6.169800 TGTTGGTTCTATCATTCATCGTGAA 58.830 36.000 3.49 3.49 41.09 3.18
4263 4378 5.729510 TGTTGGTTCTATCATTCATCGTGA 58.270 37.500 0.00 0.00 0.00 4.35
4264 4379 5.812127 TCTGTTGGTTCTATCATTCATCGTG 59.188 40.000 0.00 0.00 0.00 4.35
4265 4380 5.977635 TCTGTTGGTTCTATCATTCATCGT 58.022 37.500 0.00 0.00 0.00 3.73
4266 4381 8.491152 GTTATCTGTTGGTTCTATCATTCATCG 58.509 37.037 0.00 0.00 0.00 3.84
4267 4382 9.553064 AGTTATCTGTTGGTTCTATCATTCATC 57.447 33.333 0.00 0.00 0.00 2.92
4268 4383 9.911788 AAGTTATCTGTTGGTTCTATCATTCAT 57.088 29.630 0.00 0.00 0.00 2.57
4269 4384 9.739276 AAAGTTATCTGTTGGTTCTATCATTCA 57.261 29.630 0.00 0.00 0.00 2.57
4270 4385 9.994432 CAAAGTTATCTGTTGGTTCTATCATTC 57.006 33.333 0.00 0.00 0.00 2.67
4271 4386 9.739276 TCAAAGTTATCTGTTGGTTCTATCATT 57.261 29.630 0.00 0.00 0.00 2.57
4272 4387 9.911788 ATCAAAGTTATCTGTTGGTTCTATCAT 57.088 29.630 0.00 0.00 0.00 2.45
4273 4388 9.739276 AATCAAAGTTATCTGTTGGTTCTATCA 57.261 29.630 0.00 0.00 0.00 2.15
4274 4389 9.994432 CAATCAAAGTTATCTGTTGGTTCTATC 57.006 33.333 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.