Multiple sequence alignment - TraesCS3D01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G317200 chr3D 100.000 4385 0 0 1 4385 430146033 430150417 0.000000e+00 8098.0
1 TraesCS3D01G317200 chr3D 90.940 298 24 3 139 436 588882274 588881980 8.840000e-107 398.0
2 TraesCS3D01G317200 chr3D 85.859 297 33 4 2655 2942 570263842 570264138 1.530000e-79 307.0
3 TraesCS3D01G317200 chr3D 87.302 126 13 1 2897 3019 380274797 380274672 1.640000e-29 141.0
4 TraesCS3D01G317200 chr3D 96.226 53 2 0 2074 2126 272281130 272281078 2.170000e-13 87.9
5 TraesCS3D01G317200 chr3D 94.737 57 2 1 2074 2130 415158327 415158272 2.170000e-13 87.9
6 TraesCS3D01G317200 chr3A 97.764 1565 29 3 2824 4382 568149671 568151235 0.000000e+00 2691.0
7 TraesCS3D01G317200 chr3A 90.858 1586 94 25 541 2077 568146812 568148395 0.000000e+00 2078.0
8 TraesCS3D01G317200 chr3A 97.468 316 8 0 2524 2839 568149190 568149505 1.390000e-149 540.0
9 TraesCS3D01G317200 chr3A 96.753 308 7 1 2117 2421 568148384 568148691 1.090000e-140 510.0
10 TraesCS3D01G317200 chr3A 97.727 44 1 0 69 112 568146681 568146724 4.700000e-10 76.8
11 TraesCS3D01G317200 chr3B 94.365 1260 56 10 2422 3670 562446071 562447326 0.000000e+00 1919.0
12 TraesCS3D01G317200 chr3B 88.920 1444 96 29 578 1980 562444057 562445477 0.000000e+00 1722.0
13 TraesCS3D01G317200 chr3B 89.455 550 35 9 3824 4370 562447524 562448053 0.000000e+00 673.0
14 TraesCS3D01G317200 chr3B 82.609 713 85 12 2715 3416 70005598 70006282 1.050000e-165 593.0
15 TraesCS3D01G317200 chr3B 90.759 303 19 5 2123 2421 562445570 562445867 3.180000e-106 396.0
16 TraesCS3D01G317200 chr3B 86.992 123 13 1 2897 3016 47630287 47630409 7.650000e-28 135.0
17 TraesCS3D01G317200 chr4D 89.329 328 30 3 109 436 453460268 453460590 1.470000e-109 407.0
18 TraesCS3D01G317200 chr4D 91.129 124 11 0 4120 4243 348382613 348382736 7.540000e-38 169.0
19 TraesCS3D01G317200 chr4D 96.364 55 1 1 2064 2118 396431085 396431032 6.040000e-14 89.8
20 TraesCS3D01G317200 chr5D 88.073 327 31 4 110 436 60025414 60025096 8.900000e-102 381.0
21 TraesCS3D01G317200 chr5D 89.298 299 29 3 138 436 527508986 527508691 5.360000e-99 372.0
22 TraesCS3D01G317200 chr5D 86.885 122 13 1 2897 3015 484996383 484996262 2.750000e-27 134.0
23 TraesCS3D01G317200 chr7D 89.046 283 30 1 154 436 109070023 109069742 2.510000e-92 350.0
24 TraesCS3D01G317200 chr7D 86.400 125 14 1 2898 3019 566799054 566798930 2.750000e-27 134.0
25 TraesCS3D01G317200 chr6D 86.462 325 36 2 109 433 306835185 306835501 2.510000e-92 350.0
26 TraesCS3D01G317200 chr2A 86.322 329 35 4 109 436 124286271 124285952 2.510000e-92 350.0
27 TraesCS3D01G317200 chrUn 85.953 299 38 3 139 436 274373046 274373341 2.550000e-82 316.0
28 TraesCS3D01G317200 chrUn 85.953 299 38 3 139 436 282118673 282118378 2.550000e-82 316.0
29 TraesCS3D01G317200 chrUn 92.982 57 3 1 2071 2127 79676549 79676604 1.010000e-11 82.4
30 TraesCS3D01G317200 chr5A 85.762 302 34 4 2655 2947 547799081 547798780 1.180000e-80 311.0
31 TraesCS3D01G317200 chr5A 91.129 124 11 0 4120 4243 463458449 463458572 7.540000e-38 169.0
32 TraesCS3D01G317200 chr2D 85.430 302 34 5 2655 2947 578047344 578047044 5.510000e-79 305.0
33 TraesCS3D01G317200 chr2D 91.503 153 12 1 2549 2700 95199931 95199779 4.440000e-50 209.0
34 TraesCS3D01G317200 chr2D 91.129 124 11 0 4120 4243 638426906 638427029 7.540000e-38 169.0
35 TraesCS3D01G317200 chr1D 85.430 302 35 4 2655 2947 58111596 58111295 5.510000e-79 305.0
36 TraesCS3D01G317200 chr1D 89.552 134 12 1 4120 4251 51869543 51869410 7.540000e-38 169.0
37 TraesCS3D01G317200 chr1D 91.129 124 11 0 4120 4243 254437435 254437558 7.540000e-38 169.0
38 TraesCS3D01G317200 chr1B 85.235 298 36 4 2655 2944 27366759 27367056 2.560000e-77 300.0
39 TraesCS3D01G317200 chr1B 85.235 298 36 4 2655 2944 27395968 27396265 2.560000e-77 300.0
40 TraesCS3D01G317200 chr1B 91.129 124 11 0 4120 4243 633710096 633710219 7.540000e-38 169.0
41 TraesCS3D01G317200 chr7B 90.789 152 14 0 2549 2700 317764432 317764583 2.070000e-48 204.0
42 TraesCS3D01G317200 chr6A 91.129 124 11 0 4120 4243 561962958 561963081 7.540000e-38 169.0
43 TraesCS3D01G317200 chr5B 86.885 122 13 1 2898 3016 78212458 78212579 2.750000e-27 134.0
44 TraesCS3D01G317200 chr4A 86.885 122 13 1 2898 3016 17750096 17749975 2.750000e-27 134.0
45 TraesCS3D01G317200 chr4A 90.909 55 5 0 2065 2119 618185432 618185486 1.690000e-09 75.0
46 TraesCS3D01G317200 chr7A 98.039 51 1 0 2075 2125 365077198 365077148 6.040000e-14 89.8
47 TraesCS3D01G317200 chr2B 98.039 51 1 0 2071 2121 502922253 502922203 6.040000e-14 89.8
48 TraesCS3D01G317200 chr6B 94.643 56 3 0 2071 2126 505294790 505294845 2.170000e-13 87.9
49 TraesCS3D01G317200 chr6B 93.333 60 3 1 2065 2124 705605599 705605541 2.170000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G317200 chr3D 430146033 430150417 4384 False 8098.00 8098 100.00000 1 4385 1 chr3D.!!$F1 4384
1 TraesCS3D01G317200 chr3A 568146681 568151235 4554 False 1179.16 2691 96.11400 69 4382 5 chr3A.!!$F1 4313
2 TraesCS3D01G317200 chr3B 562444057 562448053 3996 False 1177.50 1919 90.87475 578 4370 4 chr3B.!!$F3 3792
3 TraesCS3D01G317200 chr3B 70005598 70006282 684 False 593.00 593 82.60900 2715 3416 1 chr3B.!!$F2 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.034337 GGGGCGAGCCGACAATATAA 59.966 55.000 8.14 0.00 36.10 0.98 F
201 202 0.035439 AATATAATCAGCGCCGGGGG 60.035 55.000 21.35 6.75 0.00 5.40 F
1751 1838 0.040157 CGGCCATCACACAAACACTG 60.040 55.000 2.24 0.00 0.00 3.66 F
2713 3214 1.195674 GAAGAAACCTTCTGCAGCGAC 59.804 52.381 9.47 0.00 40.59 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1200 0.179048 TTCCAGTCTGGGCATATGCG 60.179 55.000 21.04 8.11 43.26 4.73 R
1970 2060 0.588252 GCAAGTCATTGTCACGCAGT 59.412 50.000 0.00 0.00 39.42 4.40 R
2812 3314 0.183731 GGGCTGTAAGATCAAGGGGG 59.816 60.000 0.00 0.00 34.07 5.40 R
3776 4499 3.260884 TCAGGAACAGTGAAGTGATACCC 59.739 47.826 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.771044 GGTGACGCGTAGTTCAACG 59.229 57.895 13.97 0.00 45.58 4.10
27 28 3.070060 CGTAGTTCAACGCGCCTC 58.930 61.111 5.73 0.00 35.87 4.70
28 29 1.443872 CGTAGTTCAACGCGCCTCT 60.444 57.895 5.73 0.16 35.87 3.69
29 30 1.674611 CGTAGTTCAACGCGCCTCTG 61.675 60.000 5.73 0.00 35.87 3.35
30 31 1.080093 TAGTTCAACGCGCCTCTGG 60.080 57.895 5.73 0.00 0.00 3.86
31 32 1.812686 TAGTTCAACGCGCCTCTGGT 61.813 55.000 5.73 0.00 0.00 4.00
32 33 2.357034 TTCAACGCGCCTCTGGTC 60.357 61.111 5.73 0.00 0.00 4.02
33 34 2.867855 TTCAACGCGCCTCTGGTCT 61.868 57.895 5.73 0.00 0.00 3.85
34 35 2.765250 TTCAACGCGCCTCTGGTCTC 62.765 60.000 5.73 0.00 0.00 3.36
35 36 4.070552 AACGCGCCTCTGGTCTCC 62.071 66.667 5.73 0.00 0.00 3.71
44 45 4.504916 CTGGTCTCCAGCGCCGAG 62.505 72.222 14.41 14.41 45.13 4.63
46 47 4.500116 GGTCTCCAGCGCCGAGTC 62.500 72.222 18.59 14.12 0.00 3.36
47 48 4.838486 GTCTCCAGCGCCGAGTCG 62.838 72.222 18.59 5.29 0.00 4.18
49 50 4.838486 CTCCAGCGCCGAGTCGTC 62.838 72.222 12.31 0.00 0.00 4.20
58 59 2.716244 CGAGTCGTCGGGATGAGG 59.284 66.667 3.82 0.00 42.87 3.86
59 60 1.818363 CGAGTCGTCGGGATGAGGA 60.818 63.158 3.82 0.00 42.87 3.71
60 61 1.777030 CGAGTCGTCGGGATGAGGAG 61.777 65.000 3.82 0.00 41.83 3.69
61 62 1.448922 GAGTCGTCGGGATGAGGAGG 61.449 65.000 0.00 0.00 41.83 4.30
62 63 1.453379 GTCGTCGGGATGAGGAGGA 60.453 63.158 0.00 0.00 41.83 3.71
63 64 1.453379 TCGTCGGGATGAGGAGGAC 60.453 63.158 0.00 0.00 36.61 3.85
64 65 2.835705 CGTCGGGATGAGGAGGACG 61.836 68.421 0.00 0.00 43.43 4.79
65 66 1.453379 GTCGGGATGAGGAGGACGA 60.453 63.158 0.00 0.00 0.00 4.20
66 67 1.152943 TCGGGATGAGGAGGACGAG 60.153 63.158 0.00 0.00 0.00 4.18
67 68 2.196925 CGGGATGAGGAGGACGAGG 61.197 68.421 0.00 0.00 0.00 4.63
80 81 4.394712 CGAGGGACGGGCTGCTTT 62.395 66.667 0.00 0.00 38.46 3.51
112 113 1.783711 CTGCTCGTATTCGCAGCTTAG 59.216 52.381 13.85 4.51 45.90 2.18
113 114 1.404035 TGCTCGTATTCGCAGCTTAGA 59.596 47.619 13.85 0.00 39.25 2.10
114 115 2.047769 GCTCGTATTCGCAGCTTAGAG 58.952 52.381 8.24 0.00 37.31 2.43
116 117 1.404035 TCGTATTCGCAGCTTAGAGCA 59.596 47.619 2.47 0.00 39.34 4.26
117 118 2.034685 TCGTATTCGCAGCTTAGAGCAT 59.965 45.455 2.47 0.00 39.34 3.79
118 119 2.406691 CGTATTCGCAGCTTAGAGCATC 59.593 50.000 2.47 0.00 45.56 3.91
119 120 6.046347 TCGTATTCGCAGCTTAGAGCATCT 62.046 45.833 2.47 0.00 42.62 2.90
120 121 7.450225 TCGTATTCGCAGCTTAGAGCATCTT 62.450 44.000 2.47 0.00 41.08 2.40
132 133 3.056313 GCATCTTCAGCCGTTGCCC 62.056 63.158 0.00 0.00 38.69 5.36
134 135 3.645268 ATCTTCAGCCGTTGCCCCC 62.645 63.158 0.00 0.00 38.69 5.40
161 162 4.558538 CCTCCAAGAGGCATAAAAATCG 57.441 45.455 0.00 0.00 43.29 3.34
162 163 3.243201 CCTCCAAGAGGCATAAAAATCGC 60.243 47.826 0.00 0.00 43.29 4.58
170 171 1.338020 GCATAAAAATCGCCTCCTGGG 59.662 52.381 0.00 0.00 38.36 4.45
171 172 1.956477 CATAAAAATCGCCTCCTGGGG 59.044 52.381 0.00 0.00 46.42 4.96
173 174 3.662117 AAAATCGCCTCCTGGGGGC 62.662 63.158 28.37 28.37 46.27 5.80
185 186 3.857038 GGGGGCGAGCCGACAATA 61.857 66.667 8.14 0.00 36.10 1.90
186 187 2.426023 GGGGCGAGCCGACAATAT 59.574 61.111 8.14 0.00 36.10 1.28
187 188 1.669440 GGGGCGAGCCGACAATATA 59.331 57.895 8.14 0.00 36.10 0.86
188 189 0.034337 GGGGCGAGCCGACAATATAA 59.966 55.000 8.14 0.00 36.10 0.98
189 190 1.338769 GGGGCGAGCCGACAATATAAT 60.339 52.381 8.14 0.00 36.10 1.28
190 191 2.000447 GGGCGAGCCGACAATATAATC 59.000 52.381 8.14 0.00 36.10 1.75
191 192 2.611971 GGGCGAGCCGACAATATAATCA 60.612 50.000 8.14 0.00 36.10 2.57
192 193 2.668457 GGCGAGCCGACAATATAATCAG 59.332 50.000 0.00 0.00 33.63 2.90
193 194 2.092838 GCGAGCCGACAATATAATCAGC 59.907 50.000 0.00 0.00 0.00 4.26
194 195 2.342651 CGAGCCGACAATATAATCAGCG 59.657 50.000 0.00 0.00 0.00 5.18
195 196 2.069273 AGCCGACAATATAATCAGCGC 58.931 47.619 0.00 0.00 0.00 5.92
196 197 1.128692 GCCGACAATATAATCAGCGCC 59.871 52.381 2.29 0.00 0.00 6.53
197 198 1.390123 CCGACAATATAATCAGCGCCG 59.610 52.381 2.29 0.00 0.00 6.46
198 199 1.390123 CGACAATATAATCAGCGCCGG 59.610 52.381 2.29 0.00 0.00 6.13
199 200 1.732259 GACAATATAATCAGCGCCGGG 59.268 52.381 2.29 0.00 0.00 5.73
200 201 1.086696 CAATATAATCAGCGCCGGGG 58.913 55.000 15.40 15.40 0.00 5.73
201 202 0.035439 AATATAATCAGCGCCGGGGG 60.035 55.000 21.35 6.75 0.00 5.40
202 203 2.536997 ATATAATCAGCGCCGGGGGC 62.537 60.000 26.94 26.94 46.75 5.80
227 228 4.899239 CATCCAGCCGTCGCCCTC 62.899 72.222 0.00 0.00 34.57 4.30
241 242 3.201342 CCCTCAGGCGTCGATATTG 57.799 57.895 0.00 0.00 0.00 1.90
242 243 0.319900 CCCTCAGGCGTCGATATTGG 60.320 60.000 0.00 0.00 0.00 3.16
243 244 0.946221 CCTCAGGCGTCGATATTGGC 60.946 60.000 0.00 0.00 0.00 4.52
244 245 0.946221 CTCAGGCGTCGATATTGGCC 60.946 60.000 0.00 0.00 45.91 5.36
245 246 1.961277 CAGGCGTCGATATTGGCCC 60.961 63.158 0.00 1.30 46.75 5.80
246 247 2.110213 GGCGTCGATATTGGCCCA 59.890 61.111 0.00 0.00 39.67 5.36
247 248 2.251642 GGCGTCGATATTGGCCCAC 61.252 63.158 0.00 0.00 39.67 4.61
248 249 1.227556 GCGTCGATATTGGCCCACT 60.228 57.895 0.00 0.00 0.00 4.00
249 250 0.814010 GCGTCGATATTGGCCCACTT 60.814 55.000 0.00 0.00 0.00 3.16
250 251 1.663695 CGTCGATATTGGCCCACTTT 58.336 50.000 0.00 0.00 0.00 2.66
251 252 1.597663 CGTCGATATTGGCCCACTTTC 59.402 52.381 0.00 0.00 0.00 2.62
252 253 1.597663 GTCGATATTGGCCCACTTTCG 59.402 52.381 7.46 7.46 0.00 3.46
253 254 0.944386 CGATATTGGCCCACTTTCGG 59.056 55.000 0.00 0.00 0.00 4.30
254 255 0.668535 GATATTGGCCCACTTTCGGC 59.331 55.000 0.00 0.00 46.29 5.54
259 260 4.211986 GCCCACTTTCGGCGAATA 57.788 55.556 24.33 13.02 36.47 1.75
260 261 2.473457 GCCCACTTTCGGCGAATAA 58.527 52.632 24.33 8.61 36.47 1.40
261 262 0.806241 GCCCACTTTCGGCGAATAAA 59.194 50.000 24.33 7.81 36.47 1.40
262 263 1.202143 GCCCACTTTCGGCGAATAAAG 60.202 52.381 24.33 19.59 36.47 1.85
263 264 1.400494 CCCACTTTCGGCGAATAAAGG 59.600 52.381 24.33 20.51 37.09 3.11
264 265 1.400494 CCACTTTCGGCGAATAAAGGG 59.600 52.381 24.33 18.34 37.09 3.95
265 266 1.092348 ACTTTCGGCGAATAAAGGGC 58.908 50.000 24.33 0.00 37.09 5.19
266 267 0.380733 CTTTCGGCGAATAAAGGGCC 59.619 55.000 24.33 0.00 43.42 5.80
267 268 1.033202 TTTCGGCGAATAAAGGGCCC 61.033 55.000 24.33 16.46 43.99 5.80
268 269 2.124487 CGGCGAATAAAGGGCCCA 60.124 61.111 27.56 2.74 43.99 5.36
269 270 1.528309 CGGCGAATAAAGGGCCCAT 60.528 57.895 27.56 10.06 43.99 4.00
270 271 0.250553 CGGCGAATAAAGGGCCCATA 60.251 55.000 27.56 17.50 43.99 2.74
271 272 1.613255 CGGCGAATAAAGGGCCCATAT 60.613 52.381 27.56 19.09 43.99 1.78
272 273 1.818674 GGCGAATAAAGGGCCCATATG 59.181 52.381 27.56 11.89 41.01 1.78
273 274 1.818674 GCGAATAAAGGGCCCATATGG 59.181 52.381 27.56 15.41 37.09 2.74
284 285 3.254629 CCATATGGGCGAGAATGGG 57.745 57.895 14.52 0.00 36.12 4.00
285 286 0.962356 CCATATGGGCGAGAATGGGC 60.962 60.000 14.52 0.00 39.11 5.36
290 291 2.836154 GGCGAGAATGGGCCCATA 59.164 61.111 37.59 11.86 43.64 2.74
291 292 1.380302 GGCGAGAATGGGCCCATAT 59.620 57.895 37.59 28.06 43.64 1.78
292 293 0.251341 GGCGAGAATGGGCCCATATT 60.251 55.000 37.59 27.14 43.64 1.28
293 294 1.168714 GCGAGAATGGGCCCATATTC 58.831 55.000 37.59 31.37 35.31 1.75
294 295 1.442769 CGAGAATGGGCCCATATTCG 58.557 55.000 36.46 36.46 38.13 3.34
295 296 1.826385 GAGAATGGGCCCATATTCGG 58.174 55.000 37.59 0.00 38.13 4.30
296 297 0.251341 AGAATGGGCCCATATTCGGC 60.251 55.000 37.59 20.69 46.29 5.54
301 302 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
302 303 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
303 304 1.782028 GCCCATATTCGGCGTGGTTC 61.782 60.000 6.85 0.00 36.47 3.62
304 305 1.495584 CCCATATTCGGCGTGGTTCG 61.496 60.000 6.85 0.00 43.12 3.95
305 306 0.808453 CCATATTCGGCGTGGTTCGT 60.808 55.000 6.85 0.00 42.13 3.85
306 307 0.575390 CATATTCGGCGTGGTTCGTC 59.425 55.000 6.85 0.00 42.13 4.20
313 314 3.103911 CGTGGTTCGTCGTGGCTC 61.104 66.667 0.00 0.00 34.52 4.70
314 315 3.103911 GTGGTTCGTCGTGGCTCG 61.104 66.667 1.94 1.94 41.41 5.03
315 316 4.351938 TGGTTCGTCGTGGCTCGG 62.352 66.667 9.26 0.00 40.32 4.63
322 323 4.287781 TCGTGGCTCGGCGTTCAA 62.288 61.111 6.85 0.00 40.32 2.69
323 324 3.118454 CGTGGCTCGGCGTTCAAT 61.118 61.111 6.85 0.00 35.71 2.57
324 325 2.677003 CGTGGCTCGGCGTTCAATT 61.677 57.895 6.85 0.00 35.71 2.32
325 326 1.355796 CGTGGCTCGGCGTTCAATTA 61.356 55.000 6.85 0.00 35.71 1.40
326 327 1.014352 GTGGCTCGGCGTTCAATTAT 58.986 50.000 6.85 0.00 0.00 1.28
327 328 1.003866 GTGGCTCGGCGTTCAATTATC 60.004 52.381 6.85 0.00 0.00 1.75
328 329 1.295792 GGCTCGGCGTTCAATTATCA 58.704 50.000 6.85 0.00 0.00 2.15
329 330 1.668751 GGCTCGGCGTTCAATTATCAA 59.331 47.619 6.85 0.00 0.00 2.57
330 331 2.538939 GGCTCGGCGTTCAATTATCAAC 60.539 50.000 6.85 0.00 0.00 3.18
331 332 2.095213 GCTCGGCGTTCAATTATCAACA 59.905 45.455 6.85 0.00 0.00 3.33
332 333 3.242739 GCTCGGCGTTCAATTATCAACAT 60.243 43.478 6.85 0.00 0.00 2.71
333 334 4.730613 GCTCGGCGTTCAATTATCAACATT 60.731 41.667 6.85 0.00 0.00 2.71
334 335 5.503357 GCTCGGCGTTCAATTATCAACATTA 60.503 40.000 6.85 0.00 0.00 1.90
335 336 6.424176 TCGGCGTTCAATTATCAACATTAA 57.576 33.333 6.85 0.00 0.00 1.40
336 337 7.022055 TCGGCGTTCAATTATCAACATTAAT 57.978 32.000 6.85 0.00 0.00 1.40
337 338 8.144155 TCGGCGTTCAATTATCAACATTAATA 57.856 30.769 6.85 0.00 0.00 0.98
338 339 8.779303 TCGGCGTTCAATTATCAACATTAATAT 58.221 29.630 6.85 0.00 0.00 1.28
339 340 9.393249 CGGCGTTCAATTATCAACATTAATATT 57.607 29.630 0.00 0.00 0.00 1.28
371 372 8.797350 ATCACATAGTTCATCACAGAAAATCA 57.203 30.769 0.00 0.00 0.00 2.57
372 373 8.620116 TCACATAGTTCATCACAGAAAATCAA 57.380 30.769 0.00 0.00 0.00 2.57
373 374 9.065798 TCACATAGTTCATCACAGAAAATCAAA 57.934 29.630 0.00 0.00 0.00 2.69
374 375 9.850628 CACATAGTTCATCACAGAAAATCAAAT 57.149 29.630 0.00 0.00 0.00 2.32
523 524 5.357742 AAAAACTCATATTTCATGGGGGC 57.642 39.130 0.00 0.00 0.00 5.80
524 525 3.686227 AACTCATATTTCATGGGGGCA 57.314 42.857 0.00 0.00 0.00 5.36
525 526 3.234234 ACTCATATTTCATGGGGGCAG 57.766 47.619 0.00 0.00 0.00 4.85
526 527 2.785269 ACTCATATTTCATGGGGGCAGA 59.215 45.455 0.00 0.00 0.00 4.26
527 528 3.152341 CTCATATTTCATGGGGGCAGAC 58.848 50.000 0.00 0.00 0.00 3.51
536 537 2.808206 GGGGGCAGACCACGGATAG 61.808 68.421 0.00 0.00 42.13 2.08
681 704 2.748465 GCAAACCCGGACCATAAGCTAT 60.748 50.000 0.73 0.00 0.00 2.97
866 917 2.301738 CCTTCTTCCGGCCCCTTCT 61.302 63.158 0.00 0.00 0.00 2.85
896 947 1.484240 CCAAGCCCGATTTCTCTCTCT 59.516 52.381 0.00 0.00 0.00 3.10
911 962 1.971695 CTCTGGTTTCCGTTGGGCC 60.972 63.158 0.00 0.00 0.00 5.80
950 1002 0.699399 TGGGTGGGATTTTCCGCTTA 59.301 50.000 0.00 0.00 37.43 3.09
982 1041 2.288152 GGCGGTGTTGTCATGTTTGATT 60.288 45.455 0.00 0.00 33.56 2.57
983 1042 2.725723 GCGGTGTTGTCATGTTTGATTG 59.274 45.455 0.00 0.00 33.56 2.67
984 1043 3.549827 GCGGTGTTGTCATGTTTGATTGA 60.550 43.478 0.00 0.00 33.56 2.57
985 1044 4.797471 CGGTGTTGTCATGTTTGATTGAT 58.203 39.130 0.00 0.00 33.56 2.57
986 1045 4.618067 CGGTGTTGTCATGTTTGATTGATG 59.382 41.667 0.00 0.00 33.56 3.07
987 1046 4.386652 GGTGTTGTCATGTTTGATTGATGC 59.613 41.667 0.00 0.00 33.56 3.91
988 1047 5.224888 GTGTTGTCATGTTTGATTGATGCT 58.775 37.500 0.00 0.00 33.56 3.79
989 1048 6.380995 GTGTTGTCATGTTTGATTGATGCTA 58.619 36.000 0.00 0.00 33.56 3.49
991 1050 6.207221 TGTTGTCATGTTTGATTGATGCTACT 59.793 34.615 0.00 0.00 33.56 2.57
992 1051 7.390162 TGTTGTCATGTTTGATTGATGCTACTA 59.610 33.333 0.00 0.00 33.56 1.82
994 1053 8.510243 TGTCATGTTTGATTGATGCTACTATT 57.490 30.769 0.00 0.00 33.56 1.73
995 1054 9.612066 TGTCATGTTTGATTGATGCTACTATTA 57.388 29.630 0.00 0.00 33.56 0.98
1058 1117 2.267961 GCCCGTGGAGGATTTCGT 59.732 61.111 0.00 0.00 45.00 3.85
1074 1133 4.373116 GTCGCCGCCAAGGTCAGA 62.373 66.667 0.00 0.00 43.70 3.27
1083 1142 1.952367 GCCAAGGTCAGACCAATCCAG 60.952 57.143 22.31 5.18 41.95 3.86
1088 1147 2.982488 AGGTCAGACCAATCCAGTTCTT 59.018 45.455 22.31 0.00 41.95 2.52
1094 1153 1.002857 CCAATCCAGTTCTTCCCCCT 58.997 55.000 0.00 0.00 0.00 4.79
1095 1154 1.064389 CCAATCCAGTTCTTCCCCCTC 60.064 57.143 0.00 0.00 0.00 4.30
1100 1159 2.204244 GTTCTTCCCCCTCCCCCA 60.204 66.667 0.00 0.00 0.00 4.96
1101 1160 1.855451 GTTCTTCCCCCTCCCCCAA 60.855 63.158 0.00 0.00 0.00 4.12
1102 1161 1.071745 TTCTTCCCCCTCCCCCAAA 60.072 57.895 0.00 0.00 0.00 3.28
1134 1195 9.543018 GTTACAGTATCTGTTTTTGTAGATTGC 57.457 33.333 7.70 0.00 42.59 3.56
1139 1200 5.689383 TCTGTTTTTGTAGATTGCTGTCC 57.311 39.130 0.00 0.00 0.00 4.02
1216 1301 1.493446 ACTTTTCCTCCCGTTTCCTGT 59.507 47.619 0.00 0.00 0.00 4.00
1248 1333 3.979911 TCCAAATGCAGGATACAACCAT 58.020 40.909 0.00 0.00 41.41 3.55
1249 1334 5.122707 TCCAAATGCAGGATACAACCATA 57.877 39.130 0.00 0.00 41.41 2.74
1250 1335 4.887071 TCCAAATGCAGGATACAACCATAC 59.113 41.667 0.00 0.00 41.41 2.39
1252 1337 6.061441 CCAAATGCAGGATACAACCATACTA 58.939 40.000 0.00 0.00 41.41 1.82
1273 1358 2.185004 GCACAAAGCCTACAAGGAGA 57.815 50.000 0.00 0.00 37.67 3.71
1279 1364 2.104669 AGCCTACAAGGAGATACCCC 57.895 55.000 0.00 0.00 37.67 4.95
1446 1531 0.812549 GGAGTTCCAGAGACCGAGAC 59.187 60.000 0.00 0.00 35.64 3.36
1536 1623 5.515270 GCATCTGATTTTACGTTTTAAGGCC 59.485 40.000 0.00 0.00 0.00 5.19
1555 1642 2.767505 CCGGTGAGTAACTTGCTCTTT 58.232 47.619 8.19 0.00 34.30 2.52
1592 1679 6.607689 TGTTTGTTATAGGAAAGAATGTGCG 58.392 36.000 0.00 0.00 0.00 5.34
1640 1727 3.147595 TCGATGCAGAGGTCGGGG 61.148 66.667 7.53 0.00 38.34 5.73
1694 1781 4.692625 CACGAGAATATTAGCTCCAATGGG 59.307 45.833 0.00 0.00 0.00 4.00
1751 1838 0.040157 CGGCCATCACACAAACACTG 60.040 55.000 2.24 0.00 0.00 3.66
1769 1856 9.345517 CAAACACTGGATAAATTGTACAATCTG 57.654 33.333 21.02 13.69 0.00 2.90
1882 1969 9.090692 GTTGTTTACTGTTCTGTTAGTTACTCA 57.909 33.333 0.00 0.00 0.00 3.41
1979 2069 5.585500 TGTTCTGTAAATAACTGCGTGAC 57.415 39.130 0.00 0.00 0.00 3.67
2068 2159 4.297510 CACTGCAGCACTATCTGATACTC 58.702 47.826 15.27 0.00 36.19 2.59
2069 2160 3.320541 ACTGCAGCACTATCTGATACTCC 59.679 47.826 15.27 0.00 36.19 3.85
2074 2165 4.586421 CAGCACTATCTGATACTCCCTGAA 59.414 45.833 0.00 0.00 36.19 3.02
2075 2166 4.832266 AGCACTATCTGATACTCCCTGAAG 59.168 45.833 0.00 0.00 0.00 3.02
2076 2167 4.586841 GCACTATCTGATACTCCCTGAAGT 59.413 45.833 0.00 0.00 0.00 3.01
2077 2168 5.069781 GCACTATCTGATACTCCCTGAAGTT 59.930 44.000 0.00 0.00 0.00 2.66
2078 2169 6.265649 GCACTATCTGATACTCCCTGAAGTTA 59.734 42.308 0.00 0.00 0.00 2.24
2079 2170 7.523052 GCACTATCTGATACTCCCTGAAGTTAG 60.523 44.444 0.00 0.00 0.00 2.34
2080 2171 7.504238 CACTATCTGATACTCCCTGAAGTTAGT 59.496 40.741 0.00 0.00 0.00 2.24
2081 2172 8.725256 ACTATCTGATACTCCCTGAAGTTAGTA 58.275 37.037 0.00 0.00 0.00 1.82
2082 2173 7.826918 ATCTGATACTCCCTGAAGTTAGTAC 57.173 40.000 0.00 0.00 0.00 2.73
2083 2174 6.728411 TCTGATACTCCCTGAAGTTAGTACA 58.272 40.000 0.00 0.00 0.00 2.90
2084 2175 7.179966 TCTGATACTCCCTGAAGTTAGTACAA 58.820 38.462 0.00 0.00 0.00 2.41
2085 2176 7.672660 TCTGATACTCCCTGAAGTTAGTACAAA 59.327 37.037 0.00 0.00 0.00 2.83
2086 2177 7.837863 TGATACTCCCTGAAGTTAGTACAAAG 58.162 38.462 0.00 0.00 0.00 2.77
2087 2178 7.453752 TGATACTCCCTGAAGTTAGTACAAAGT 59.546 37.037 0.00 0.00 0.00 2.66
2088 2179 6.496144 ACTCCCTGAAGTTAGTACAAAGTT 57.504 37.500 0.00 0.00 0.00 2.66
2089 2180 6.289064 ACTCCCTGAAGTTAGTACAAAGTTG 58.711 40.000 0.00 0.00 0.00 3.16
2090 2181 5.617252 TCCCTGAAGTTAGTACAAAGTTGG 58.383 41.667 0.00 0.00 0.00 3.77
2091 2182 4.760204 CCCTGAAGTTAGTACAAAGTTGGG 59.240 45.833 0.00 0.00 0.00 4.12
2092 2183 5.374071 CCTGAAGTTAGTACAAAGTTGGGT 58.626 41.667 0.00 0.00 0.00 4.51
2093 2184 5.469084 CCTGAAGTTAGTACAAAGTTGGGTC 59.531 44.000 0.00 0.00 0.00 4.46
2094 2185 5.991861 TGAAGTTAGTACAAAGTTGGGTCA 58.008 37.500 0.00 0.00 0.00 4.02
2095 2186 6.597562 TGAAGTTAGTACAAAGTTGGGTCAT 58.402 36.000 0.00 0.00 0.00 3.06
2096 2187 6.708949 TGAAGTTAGTACAAAGTTGGGTCATC 59.291 38.462 0.00 0.00 0.00 2.92
2097 2188 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2098 2189 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2099 2190 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2100 2191 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2101 2192 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2102 2193 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2104 2195 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
2105 2196 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
2106 2197 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
2107 2198 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
2108 2199 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
2109 2200 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
2110 2201 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
2111 2202 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
2112 2203 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
2113 2204 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
2114 2205 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
2115 2206 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
2318 2422 4.254492 ACCTCTTTTTACTTCTCGCCATC 58.746 43.478 0.00 0.00 0.00 3.51
2378 2482 9.859427 TTTGAATTATCAGCCTTGTTTAGATTG 57.141 29.630 0.00 0.00 36.78 2.67
2425 2741 2.159179 AAAGGGGGCCACATTGATAC 57.841 50.000 5.22 0.00 0.00 2.24
2427 2743 1.528309 GGGGGCCACATTGATACGG 60.528 63.158 7.65 0.00 0.00 4.02
2467 2784 6.480320 GCTCTCTTTGTACTTTGTCTTTGAGA 59.520 38.462 0.00 0.00 0.00 3.27
2469 2786 8.786826 TCTCTTTGTACTTTGTCTTTGAGAAA 57.213 30.769 0.00 0.00 0.00 2.52
2512 2829 5.038033 TCGGTTTTTCCTTTGATTTGTTCG 58.962 37.500 0.00 0.00 0.00 3.95
2513 2830 4.801516 CGGTTTTTCCTTTGATTTGTTCGT 59.198 37.500 0.00 0.00 0.00 3.85
2517 2834 7.334749 GTTTTTCCTTTGATTTGTTCGTAAGC 58.665 34.615 0.00 0.00 37.18 3.09
2519 2836 5.356882 TCCTTTGATTTGTTCGTAAGCAG 57.643 39.130 0.00 0.00 37.18 4.24
2598 3098 5.105917 CGGCCTGGTTTACTTGTTTTGATAT 60.106 40.000 0.00 0.00 0.00 1.63
2601 3101 7.375053 GCCTGGTTTACTTGTTTTGATATGAA 58.625 34.615 0.00 0.00 0.00 2.57
2652 3153 6.985059 TGAAACATCATCAAGAGATAGCTGAG 59.015 38.462 0.00 0.00 31.88 3.35
2713 3214 1.195674 GAAGAAACCTTCTGCAGCGAC 59.804 52.381 9.47 0.00 40.59 5.19
2811 3313 1.202940 AGAGGCCAGGTTCACCTTTTC 60.203 52.381 5.01 0.00 46.09 2.29
2812 3314 0.178961 AGGCCAGGTTCACCTTTTCC 60.179 55.000 5.01 0.00 46.09 3.13
2845 3531 1.133823 ACAGCCCACAGTGTGATGAAA 60.134 47.619 24.99 0.00 35.23 2.69
2949 3638 0.592247 GCTATTTTGGATGTGCCGCG 60.592 55.000 0.00 0.00 40.66 6.46
3080 3769 1.098050 GGCAGCTGATGGTTTAGTGG 58.902 55.000 20.43 0.00 0.00 4.00
3135 3824 1.629861 TGAGGATGTGGTCAGCAATCA 59.370 47.619 0.00 0.00 0.00 2.57
3261 3950 5.413523 GCTGGATTTTCTGAAATTGCCAAAT 59.586 36.000 15.34 2.14 35.65 2.32
3711 4401 8.209584 ACATCAGAGCATACAAAGTTATGATCT 58.790 33.333 5.31 5.31 46.49 2.75
3776 4499 9.859427 AAGTGGTTGATGATTACATTATGTTTG 57.141 29.630 2.23 0.00 36.82 2.93
3820 4543 7.258022 TGATTATTGTATGACGATGTTTGGG 57.742 36.000 0.00 0.00 0.00 4.12
3837 4596 6.245408 TGTTTGGGTAGCTGTAGATTTTGAT 58.755 36.000 0.00 0.00 0.00 2.57
3858 4617 4.584638 TGGCTGTAACTGATAAATGGGT 57.415 40.909 0.00 0.00 0.00 4.51
4129 4888 9.736023 GATTTGTTTGCGAAATTAGAATAGGAT 57.264 29.630 0.00 0.00 0.00 3.24
4382 5147 7.168135 GCTTTGAAATATATTGCCTTGTAGCAC 59.832 37.037 0.00 0.00 43.97 4.40
4383 5148 7.637631 TTGAAATATATTGCCTTGTAGCACA 57.362 32.000 0.00 0.00 43.97 4.57
4384 5149 7.637631 TGAAATATATTGCCTTGTAGCACAA 57.362 32.000 0.00 2.49 43.97 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.771044 GTTGAACTACGCGTCACCG 59.229 57.895 18.63 5.54 37.07 4.94
10 11 1.443872 AGAGGCGCGTTGAACTACG 60.444 57.895 8.43 4.67 44.09 3.51
11 12 1.352156 CCAGAGGCGCGTTGAACTAC 61.352 60.000 8.43 0.00 0.00 2.73
12 13 1.080093 CCAGAGGCGCGTTGAACTA 60.080 57.895 8.43 0.00 0.00 2.24
13 14 2.357517 CCAGAGGCGCGTTGAACT 60.358 61.111 8.43 0.00 0.00 3.01
14 15 2.665185 ACCAGAGGCGCGTTGAAC 60.665 61.111 8.43 0.00 0.00 3.18
15 16 2.357034 GACCAGAGGCGCGTTGAA 60.357 61.111 8.43 0.00 0.00 2.69
16 17 3.282745 GAGACCAGAGGCGCGTTGA 62.283 63.158 8.43 0.00 0.00 3.18
17 18 2.811317 GAGACCAGAGGCGCGTTG 60.811 66.667 8.43 4.75 0.00 4.10
18 19 4.070552 GGAGACCAGAGGCGCGTT 62.071 66.667 8.43 0.00 0.00 4.84
29 30 4.500116 GACTCGGCGCTGGAGACC 62.500 72.222 27.57 17.55 35.49 3.85
30 31 4.838486 CGACTCGGCGCTGGAGAC 62.838 72.222 27.57 21.85 35.49 3.36
32 33 4.838486 GACGACTCGGCGCTGGAG 62.838 72.222 17.88 20.30 37.54 3.86
41 42 1.777030 CTCCTCATCCCGACGACTCG 61.777 65.000 0.00 0.00 39.83 4.18
42 43 1.448922 CCTCCTCATCCCGACGACTC 61.449 65.000 0.00 0.00 0.00 3.36
43 44 1.454111 CCTCCTCATCCCGACGACT 60.454 63.158 0.00 0.00 0.00 4.18
44 45 1.453379 TCCTCCTCATCCCGACGAC 60.453 63.158 0.00 0.00 0.00 4.34
45 46 1.453379 GTCCTCCTCATCCCGACGA 60.453 63.158 0.00 0.00 0.00 4.20
46 47 2.835705 CGTCCTCCTCATCCCGACG 61.836 68.421 0.00 0.00 40.15 5.12
47 48 1.448922 CTCGTCCTCCTCATCCCGAC 61.449 65.000 0.00 0.00 0.00 4.79
48 49 1.152943 CTCGTCCTCCTCATCCCGA 60.153 63.158 0.00 0.00 0.00 5.14
49 50 2.196925 CCTCGTCCTCCTCATCCCG 61.197 68.421 0.00 0.00 0.00 5.14
50 51 1.834822 CCCTCGTCCTCCTCATCCC 60.835 68.421 0.00 0.00 0.00 3.85
51 52 1.110518 GTCCCTCGTCCTCCTCATCC 61.111 65.000 0.00 0.00 0.00 3.51
52 53 1.448922 CGTCCCTCGTCCTCCTCATC 61.449 65.000 0.00 0.00 34.52 2.92
53 54 1.454111 CGTCCCTCGTCCTCCTCAT 60.454 63.158 0.00 0.00 34.52 2.90
54 55 2.045242 CGTCCCTCGTCCTCCTCA 60.045 66.667 0.00 0.00 34.52 3.86
55 56 2.829458 CCGTCCCTCGTCCTCCTC 60.829 72.222 0.00 0.00 37.94 3.71
56 57 4.444081 CCCGTCCCTCGTCCTCCT 62.444 72.222 0.00 0.00 37.94 3.69
63 64 2.907897 CTAAAGCAGCCCGTCCCTCG 62.908 65.000 0.00 0.00 39.52 4.63
64 65 1.153349 CTAAAGCAGCCCGTCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
65 66 2.670148 CCTAAAGCAGCCCGTCCCT 61.670 63.158 0.00 0.00 0.00 4.20
66 67 1.619807 TACCTAAAGCAGCCCGTCCC 61.620 60.000 0.00 0.00 0.00 4.46
67 68 0.179081 CTACCTAAAGCAGCCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
80 81 1.776662 ACGAGCAGGAATGCTACCTA 58.223 50.000 2.15 0.00 46.36 3.08
112 113 1.427020 GCAACGGCTGAAGATGCTC 59.573 57.895 0.00 0.00 36.96 4.26
113 114 2.042831 GGCAACGGCTGAAGATGCT 61.043 57.895 0.00 0.00 40.87 3.79
114 115 2.486966 GGCAACGGCTGAAGATGC 59.513 61.111 0.00 4.17 40.87 3.91
116 117 2.044946 GGGGCAACGGCTGAAGAT 60.045 61.111 0.00 0.00 40.87 2.40
117 118 4.344865 GGGGGCAACGGCTGAAGA 62.345 66.667 0.00 0.00 40.87 2.87
141 142 3.243201 GGCGATTTTTATGCCTCTTGGAG 60.243 47.826 0.00 0.00 45.40 3.86
142 143 2.687935 GGCGATTTTTATGCCTCTTGGA 59.312 45.455 0.00 0.00 45.40 3.53
143 144 3.084070 GGCGATTTTTATGCCTCTTGG 57.916 47.619 0.00 0.00 45.40 3.61
151 152 1.956477 CCCCAGGAGGCGATTTTTATG 59.044 52.381 0.00 0.00 0.00 1.90
152 153 1.133482 CCCCCAGGAGGCGATTTTTAT 60.133 52.381 0.00 0.00 33.47 1.40
153 154 0.257616 CCCCCAGGAGGCGATTTTTA 59.742 55.000 0.00 0.00 33.47 1.52
154 155 1.000359 CCCCCAGGAGGCGATTTTT 60.000 57.895 0.00 0.00 33.47 1.94
155 156 2.683475 CCCCCAGGAGGCGATTTT 59.317 61.111 0.00 0.00 33.47 1.82
156 157 4.129148 GCCCCCAGGAGGCGATTT 62.129 66.667 0.00 0.00 41.41 2.17
170 171 2.000447 GATTATATTGTCGGCTCGCCC 59.000 52.381 1.72 0.00 0.00 6.13
171 172 2.668457 CTGATTATATTGTCGGCTCGCC 59.332 50.000 0.00 0.00 0.00 5.54
172 173 2.092838 GCTGATTATATTGTCGGCTCGC 59.907 50.000 11.55 0.00 42.17 5.03
173 174 2.342651 CGCTGATTATATTGTCGGCTCG 59.657 50.000 14.97 0.00 43.03 5.03
174 175 2.092838 GCGCTGATTATATTGTCGGCTC 59.907 50.000 0.00 7.01 43.03 4.70
175 176 2.069273 GCGCTGATTATATTGTCGGCT 58.931 47.619 0.00 0.00 43.03 5.52
176 177 1.128692 GGCGCTGATTATATTGTCGGC 59.871 52.381 7.64 9.61 42.05 5.54
177 178 1.390123 CGGCGCTGATTATATTGTCGG 59.610 52.381 11.90 0.00 0.00 4.79
178 179 1.390123 CCGGCGCTGATTATATTGTCG 59.610 52.381 20.25 1.86 0.00 4.35
179 180 1.732259 CCCGGCGCTGATTATATTGTC 59.268 52.381 20.25 0.00 0.00 3.18
180 181 1.610624 CCCCGGCGCTGATTATATTGT 60.611 52.381 20.25 0.00 0.00 2.71
181 182 1.086696 CCCCGGCGCTGATTATATTG 58.913 55.000 20.25 0.00 0.00 1.90
182 183 0.035439 CCCCCGGCGCTGATTATATT 60.035 55.000 20.25 0.00 0.00 1.28
183 184 1.602237 CCCCCGGCGCTGATTATAT 59.398 57.895 20.25 0.00 0.00 0.86
184 185 3.065306 CCCCCGGCGCTGATTATA 58.935 61.111 20.25 0.00 0.00 0.98
185 186 4.643387 GCCCCCGGCGCTGATTAT 62.643 66.667 20.25 0.00 39.62 1.28
210 211 4.899239 GAGGGCGACGGCTGGATG 62.899 72.222 21.48 0.00 39.81 3.51
223 224 0.319900 CCAATATCGACGCCTGAGGG 60.320 60.000 0.00 0.00 0.00 4.30
224 225 0.946221 GCCAATATCGACGCCTGAGG 60.946 60.000 0.00 0.00 0.00 3.86
225 226 0.946221 GGCCAATATCGACGCCTGAG 60.946 60.000 0.00 0.00 38.41 3.35
226 227 1.069090 GGCCAATATCGACGCCTGA 59.931 57.895 0.00 0.00 38.41 3.86
227 228 1.961277 GGGCCAATATCGACGCCTG 60.961 63.158 4.39 0.00 41.35 4.85
228 229 2.426023 GGGCCAATATCGACGCCT 59.574 61.111 4.39 0.00 41.35 5.52
229 230 2.110213 TGGGCCAATATCGACGCC 59.890 61.111 2.13 0.00 40.85 5.68
230 231 0.814010 AAGTGGGCCAATATCGACGC 60.814 55.000 8.40 0.00 0.00 5.19
231 232 1.597663 GAAAGTGGGCCAATATCGACG 59.402 52.381 8.40 0.00 0.00 5.12
232 233 1.597663 CGAAAGTGGGCCAATATCGAC 59.402 52.381 23.77 5.23 0.00 4.20
233 234 1.474320 CCGAAAGTGGGCCAATATCGA 60.474 52.381 27.53 0.00 0.00 3.59
234 235 0.944386 CCGAAAGTGGGCCAATATCG 59.056 55.000 22.11 22.11 0.00 2.92
235 236 0.668535 GCCGAAAGTGGGCCAATATC 59.331 55.000 8.40 5.65 44.97 1.63
236 237 2.807247 GCCGAAAGTGGGCCAATAT 58.193 52.632 8.40 0.00 44.97 1.28
237 238 4.329831 GCCGAAAGTGGGCCAATA 57.670 55.556 8.40 0.00 44.97 1.90
243 244 1.400494 CCTTTATTCGCCGAAAGTGGG 59.600 52.381 2.60 0.78 31.89 4.61
244 245 1.400494 CCCTTTATTCGCCGAAAGTGG 59.600 52.381 2.60 4.21 31.89 4.00
245 246 1.202143 GCCCTTTATTCGCCGAAAGTG 60.202 52.381 2.60 0.00 31.89 3.16
246 247 1.092348 GCCCTTTATTCGCCGAAAGT 58.908 50.000 2.60 0.00 31.89 2.66
247 248 0.380733 GGCCCTTTATTCGCCGAAAG 59.619 55.000 2.60 0.00 31.92 2.62
248 249 1.033202 GGGCCCTTTATTCGCCGAAA 61.033 55.000 17.04 0.00 43.99 3.46
249 250 1.452470 GGGCCCTTTATTCGCCGAA 60.452 57.895 17.04 0.33 43.99 4.30
250 251 1.990160 ATGGGCCCTTTATTCGCCGA 61.990 55.000 25.70 0.00 43.99 5.54
251 252 0.250553 TATGGGCCCTTTATTCGCCG 60.251 55.000 25.70 0.00 43.99 6.46
252 253 1.818674 CATATGGGCCCTTTATTCGCC 59.181 52.381 25.70 0.00 42.23 5.54
253 254 1.818674 CCATATGGGCCCTTTATTCGC 59.181 52.381 25.70 0.00 0.00 4.70
266 267 0.962356 GCCCATTCTCGCCCATATGG 60.962 60.000 15.41 15.41 37.79 2.74
267 268 0.962356 GGCCCATTCTCGCCCATATG 60.962 60.000 0.00 0.00 39.39 1.78
268 269 1.380302 GGCCCATTCTCGCCCATAT 59.620 57.895 0.00 0.00 39.39 1.78
269 270 2.836154 GGCCCATTCTCGCCCATA 59.164 61.111 0.00 0.00 39.39 2.74
273 274 0.251341 AATATGGGCCCATTCTCGCC 60.251 55.000 41.49 2.13 44.92 5.54
274 275 1.168714 GAATATGGGCCCATTCTCGC 58.831 55.000 41.49 22.02 37.82 5.03
275 276 1.442769 CGAATATGGGCCCATTCTCG 58.557 55.000 41.49 37.60 37.82 4.04
276 277 1.826385 CCGAATATGGGCCCATTCTC 58.174 55.000 41.49 32.15 37.82 2.87
277 278 0.251341 GCCGAATATGGGCCCATTCT 60.251 55.000 41.49 28.06 44.97 2.40
278 279 2.267045 GCCGAATATGGGCCCATTC 58.733 57.895 41.49 31.38 44.97 2.67
279 280 4.519610 GCCGAATATGGGCCCATT 57.480 55.556 41.49 26.68 44.97 3.16
285 286 1.495584 CGAACCACGCCGAATATGGG 61.496 60.000 0.00 0.00 37.86 4.00
286 287 0.808453 ACGAACCACGCCGAATATGG 60.808 55.000 0.00 0.00 46.94 2.74
287 288 0.575390 GACGAACCACGCCGAATATG 59.425 55.000 0.00 0.00 46.94 1.78
288 289 2.967740 GACGAACCACGCCGAATAT 58.032 52.632 0.00 0.00 46.94 1.28
289 290 4.481870 GACGAACCACGCCGAATA 57.518 55.556 0.00 0.00 46.94 1.75
297 298 3.103911 CGAGCCACGACGAACCAC 61.104 66.667 0.00 0.00 45.77 4.16
298 299 4.351938 CCGAGCCACGACGAACCA 62.352 66.667 0.00 0.00 45.77 3.67
305 306 3.583276 ATTGAACGCCGAGCCACGA 62.583 57.895 0.00 0.00 45.77 4.35
306 307 1.355796 TAATTGAACGCCGAGCCACG 61.356 55.000 0.00 0.00 42.18 4.94
307 308 1.003866 GATAATTGAACGCCGAGCCAC 60.004 52.381 0.00 0.00 0.00 5.01
308 309 1.295792 GATAATTGAACGCCGAGCCA 58.704 50.000 0.00 0.00 0.00 4.75
309 310 1.295792 TGATAATTGAACGCCGAGCC 58.704 50.000 0.00 0.00 0.00 4.70
310 311 2.095213 TGTTGATAATTGAACGCCGAGC 59.905 45.455 0.00 0.00 0.00 5.03
311 312 4.536364 ATGTTGATAATTGAACGCCGAG 57.464 40.909 0.00 0.00 0.00 4.63
312 313 4.955925 AATGTTGATAATTGAACGCCGA 57.044 36.364 0.00 0.00 0.00 5.54
313 314 8.948853 ATATTAATGTTGATAATTGAACGCCG 57.051 30.769 0.00 0.00 0.00 6.46
345 346 9.889128 TGATTTTCTGTGATGAACTATGTGATA 57.111 29.630 0.00 0.00 0.00 2.15
346 347 8.797350 TGATTTTCTGTGATGAACTATGTGAT 57.203 30.769 0.00 0.00 0.00 3.06
347 348 8.620116 TTGATTTTCTGTGATGAACTATGTGA 57.380 30.769 0.00 0.00 0.00 3.58
348 349 9.850628 ATTTGATTTTCTGTGATGAACTATGTG 57.149 29.630 0.00 0.00 0.00 3.21
497 498 7.992608 GCCCCCATGAAATATGAGTTTTTATTT 59.007 33.333 0.00 0.00 32.21 1.40
498 499 7.127032 TGCCCCCATGAAATATGAGTTTTTATT 59.873 33.333 0.00 0.00 0.00 1.40
499 500 6.614906 TGCCCCCATGAAATATGAGTTTTTAT 59.385 34.615 0.00 0.00 0.00 1.40
500 501 5.960811 TGCCCCCATGAAATATGAGTTTTTA 59.039 36.000 0.00 0.00 0.00 1.52
501 502 4.782156 TGCCCCCATGAAATATGAGTTTTT 59.218 37.500 0.00 0.00 0.00 1.94
502 503 4.360889 TGCCCCCATGAAATATGAGTTTT 58.639 39.130 0.00 0.00 0.00 2.43
503 504 3.962718 CTGCCCCCATGAAATATGAGTTT 59.037 43.478 0.00 0.00 0.00 2.66
504 505 3.205056 TCTGCCCCCATGAAATATGAGTT 59.795 43.478 0.00 0.00 0.00 3.01
505 506 2.785269 TCTGCCCCCATGAAATATGAGT 59.215 45.455 0.00 0.00 0.00 3.41
506 507 3.152341 GTCTGCCCCCATGAAATATGAG 58.848 50.000 0.00 0.00 0.00 2.90
507 508 2.158475 GGTCTGCCCCCATGAAATATGA 60.158 50.000 0.00 0.00 0.00 2.15
508 509 2.242043 GGTCTGCCCCCATGAAATATG 58.758 52.381 0.00 0.00 0.00 1.78
509 510 1.858910 TGGTCTGCCCCCATGAAATAT 59.141 47.619 0.00 0.00 0.00 1.28
510 511 1.064017 GTGGTCTGCCCCCATGAAATA 60.064 52.381 0.00 0.00 33.76 1.40
511 512 0.324645 GTGGTCTGCCCCCATGAAAT 60.325 55.000 0.00 0.00 33.76 2.17
512 513 1.076549 GTGGTCTGCCCCCATGAAA 59.923 57.895 0.00 0.00 33.76 2.69
513 514 2.763215 GTGGTCTGCCCCCATGAA 59.237 61.111 0.00 0.00 33.76 2.57
514 515 3.716195 CGTGGTCTGCCCCCATGA 61.716 66.667 0.00 0.00 40.75 3.07
515 516 4.802051 CCGTGGTCTGCCCCCATG 62.802 72.222 0.00 0.00 38.48 3.66
516 517 2.907482 TATCCGTGGTCTGCCCCCAT 62.907 60.000 0.00 0.00 33.76 4.00
517 518 3.627332 TATCCGTGGTCTGCCCCCA 62.627 63.158 0.00 0.00 0.00 4.96
518 519 2.766651 TATCCGTGGTCTGCCCCC 60.767 66.667 0.00 0.00 0.00 5.40
519 520 2.808206 CCTATCCGTGGTCTGCCCC 61.808 68.421 0.00 0.00 0.00 5.80
520 521 1.749334 CTCCTATCCGTGGTCTGCCC 61.749 65.000 0.00 0.00 0.00 5.36
521 522 1.742768 CTCCTATCCGTGGTCTGCC 59.257 63.158 0.00 0.00 0.00 4.85
522 523 1.068250 GCTCCTATCCGTGGTCTGC 59.932 63.158 0.00 0.00 0.00 4.26
523 524 1.115467 AAGCTCCTATCCGTGGTCTG 58.885 55.000 0.00 0.00 0.00 3.51
524 525 1.867363 AAAGCTCCTATCCGTGGTCT 58.133 50.000 0.00 0.00 0.00 3.85
525 526 2.552031 GAAAAGCTCCTATCCGTGGTC 58.448 52.381 0.00 0.00 0.00 4.02
526 527 1.209747 GGAAAAGCTCCTATCCGTGGT 59.790 52.381 0.00 0.00 41.61 4.16
527 528 1.475213 GGGAAAAGCTCCTATCCGTGG 60.475 57.143 0.00 0.00 44.68 4.94
536 537 0.393673 GAGCAGAGGGGAAAAGCTCC 60.394 60.000 0.00 0.00 44.37 4.70
552 570 2.095252 GGTGAGAAGCGAACCGAGC 61.095 63.158 0.00 0.00 0.00 5.03
681 704 2.905085 TGGGGTTATGTTCGTTCTGGTA 59.095 45.455 0.00 0.00 0.00 3.25
913 964 1.740025 CCAATCTTGGCGGAGTTTCTC 59.260 52.381 0.00 0.00 42.21 2.87
914 965 1.826385 CCAATCTTGGCGGAGTTTCT 58.174 50.000 0.00 0.00 42.21 2.52
950 1002 3.061848 CACCGCCGGCTCCAAAAT 61.062 61.111 26.68 0.00 0.00 1.82
982 1041 6.127338 CCCTCCATCGAATAATAGTAGCATCA 60.127 42.308 0.00 0.00 0.00 3.07
983 1042 6.276847 CCCTCCATCGAATAATAGTAGCATC 58.723 44.000 0.00 0.00 0.00 3.91
984 1043 5.129485 CCCCTCCATCGAATAATAGTAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
985 1044 4.466370 CCCCTCCATCGAATAATAGTAGCA 59.534 45.833 0.00 0.00 0.00 3.49
986 1045 4.141914 CCCCCTCCATCGAATAATAGTAGC 60.142 50.000 0.00 0.00 0.00 3.58
987 1046 5.024118 ACCCCCTCCATCGAATAATAGTAG 58.976 45.833 0.00 0.00 0.00 2.57
988 1047 5.019657 ACCCCCTCCATCGAATAATAGTA 57.980 43.478 0.00 0.00 0.00 1.82
989 1048 3.870559 ACCCCCTCCATCGAATAATAGT 58.129 45.455 0.00 0.00 0.00 2.12
991 1050 4.359105 CCTACCCCCTCCATCGAATAATA 58.641 47.826 0.00 0.00 0.00 0.98
992 1051 3.182152 CCTACCCCCTCCATCGAATAAT 58.818 50.000 0.00 0.00 0.00 1.28
994 1053 1.203262 CCCTACCCCCTCCATCGAATA 60.203 57.143 0.00 0.00 0.00 1.75
995 1054 0.473886 CCCTACCCCCTCCATCGAAT 60.474 60.000 0.00 0.00 0.00 3.34
997 1056 2.016315 TCCCTACCCCCTCCATCGA 61.016 63.158 0.00 0.00 0.00 3.59
1058 1117 4.373116 GTCTGACCTTGGCGGCGA 62.373 66.667 12.98 0.14 35.61 5.54
1074 1133 0.704664 GGGGGAAGAACTGGATTGGT 59.295 55.000 0.00 0.00 0.00 3.67
1083 1142 1.440362 TTTGGGGGAGGGGGAAGAAC 61.440 60.000 0.00 0.00 0.00 3.01
1088 1147 0.878189 AAAAATTTGGGGGAGGGGGA 59.122 50.000 0.00 0.00 0.00 4.81
1094 1153 7.013834 AGATACTGTAACAAAAATTTGGGGGA 58.986 34.615 10.38 0.00 42.34 4.81
1095 1154 7.096551 CAGATACTGTAACAAAAATTTGGGGG 58.903 38.462 10.38 0.00 42.34 5.40
1134 1195 0.882042 GTCTGGGCATATGCGGACAG 60.882 60.000 26.68 26.68 43.26 3.51
1139 1200 0.179048 TTCCAGTCTGGGCATATGCG 60.179 55.000 21.04 8.11 43.26 4.73
1185 1269 7.444629 ACGGGAGGAAAAGTAAAATAAACTC 57.555 36.000 0.00 0.00 0.00 3.01
1187 1271 7.596248 GGAAACGGGAGGAAAAGTAAAATAAAC 59.404 37.037 0.00 0.00 0.00 2.01
1195 1279 2.707257 ACAGGAAACGGGAGGAAAAGTA 59.293 45.455 0.00 0.00 0.00 2.24
1202 1286 3.007635 GTTAATGACAGGAAACGGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1204 1288 3.581332 AGAGTTAATGACAGGAAACGGGA 59.419 43.478 0.00 0.00 0.00 5.14
1216 1301 5.569355 TCCTGCATTTGGAAGAGTTAATGA 58.431 37.500 0.00 0.00 31.29 2.57
1248 1333 4.285003 TCCTTGTAGGCTTTGTGCTTAGTA 59.715 41.667 0.00 0.00 42.39 1.82
1249 1334 3.072476 TCCTTGTAGGCTTTGTGCTTAGT 59.928 43.478 0.00 0.00 42.39 2.24
1250 1335 3.674997 TCCTTGTAGGCTTTGTGCTTAG 58.325 45.455 0.00 0.00 42.39 2.18
1252 1337 2.106511 TCTCCTTGTAGGCTTTGTGCTT 59.893 45.455 0.00 0.00 42.39 3.91
1273 1358 2.507854 CCATGACGCGAGGGGGTAT 61.508 63.158 15.93 0.00 39.74 2.73
1279 1364 3.499737 GCAACCCATGACGCGAGG 61.500 66.667 15.93 8.99 0.00 4.63
1446 1531 1.376812 GGGAAGTGCACGTAAGGGG 60.377 63.158 12.01 0.00 45.01 4.79
1536 1623 3.560068 ACAAAAGAGCAAGTTACTCACCG 59.440 43.478 5.90 0.00 36.58 4.94
1592 1679 4.787598 CAAAGAATCTAACTGGTGTGCAC 58.212 43.478 10.75 10.75 0.00 4.57
1751 1838 6.263168 CCCAGTCCAGATTGTACAATTTATCC 59.737 42.308 21.63 9.06 0.00 2.59
1769 1856 2.359230 GCACTGCTGACCCAGTCC 60.359 66.667 0.00 0.00 43.85 3.85
1970 2060 0.588252 GCAAGTCATTGTCACGCAGT 59.412 50.000 0.00 0.00 39.42 4.40
1979 2069 4.883026 GCAGCAGGCAAGTCATTG 57.117 55.556 0.00 0.00 43.97 2.82
2068 2159 4.760204 CCCAACTTTGTACTAACTTCAGGG 59.240 45.833 0.00 0.00 0.00 4.45
2069 2160 5.374071 ACCCAACTTTGTACTAACTTCAGG 58.626 41.667 0.00 0.00 0.00 3.86
2074 2165 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2075 2166 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2076 2167 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2078 2169 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2079 2170 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2081 2172 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
2082 2173 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
2083 2174 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
2084 2175 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
2085 2176 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
2086 2177 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
2087 2178 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
2088 2179 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
2089 2180 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
2090 2181 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
2091 2182 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2092 2183 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2093 2184 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2094 2185 8.493787 AATACTCCCTCCGTTCTAAAATAGAT 57.506 34.615 0.00 0.00 34.22 1.98
2095 2186 7.909485 AATACTCCCTCCGTTCTAAAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
2096 2187 7.985752 ACAAATACTCCCTCCGTTCTAAAATAG 59.014 37.037 0.00 0.00 0.00 1.73
2097 2188 7.767198 CACAAATACTCCCTCCGTTCTAAAATA 59.233 37.037 0.00 0.00 0.00 1.40
2098 2189 6.598064 CACAAATACTCCCTCCGTTCTAAAAT 59.402 38.462 0.00 0.00 0.00 1.82
2099 2190 5.935789 CACAAATACTCCCTCCGTTCTAAAA 59.064 40.000 0.00 0.00 0.00 1.52
2100 2191 5.246656 TCACAAATACTCCCTCCGTTCTAAA 59.753 40.000 0.00 0.00 0.00 1.85
2101 2192 4.773674 TCACAAATACTCCCTCCGTTCTAA 59.226 41.667 0.00 0.00 0.00 2.10
2102 2193 4.346730 TCACAAATACTCCCTCCGTTCTA 58.653 43.478 0.00 0.00 0.00 2.10
2103 2194 3.170717 TCACAAATACTCCCTCCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
2104 2195 3.604875 TCACAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2105 2196 3.326880 ACTTCACAAATACTCCCTCCGTT 59.673 43.478 0.00 0.00 0.00 4.44
2106 2197 2.904434 ACTTCACAAATACTCCCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
2107 2198 3.611766 ACTTCACAAATACTCCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
2108 2199 4.868734 CGTTACTTCACAAATACTCCCTCC 59.131 45.833 0.00 0.00 0.00 4.30
2109 2200 5.717119 TCGTTACTTCACAAATACTCCCTC 58.283 41.667 0.00 0.00 0.00 4.30
2110 2201 5.733620 TCGTTACTTCACAAATACTCCCT 57.266 39.130 0.00 0.00 0.00 4.20
2111 2202 6.980051 AATCGTTACTTCACAAATACTCCC 57.020 37.500 0.00 0.00 0.00 4.30
2112 2203 8.699283 ACTAATCGTTACTTCACAAATACTCC 57.301 34.615 0.00 0.00 0.00 3.85
2113 2204 9.953825 CAACTAATCGTTACTTCACAAATACTC 57.046 33.333 0.00 0.00 33.63 2.59
2114 2205 9.701098 TCAACTAATCGTTACTTCACAAATACT 57.299 29.630 0.00 0.00 33.63 2.12
2277 2381 1.816835 GTTTTAGTACTTGGCTGCCCC 59.183 52.381 17.53 0.00 0.00 5.80
2378 2482 9.391006 TGGAATGAACACATTTAATAGGTAGAC 57.609 33.333 0.00 0.00 34.86 2.59
2425 2741 7.721286 AAGAGAGCATTGAGATAAATTACCG 57.279 36.000 0.00 0.00 0.00 4.02
2480 2797 6.864342 TCAAAGGAAAAACCGATTTACAACA 58.136 32.000 0.00 0.00 44.74 3.33
2492 2809 7.009723 TGCTTACGAACAAATCAAAGGAAAAAC 59.990 33.333 0.00 0.00 0.00 2.43
2598 3098 5.600484 ACCCTGTAATTCCACAAAACATTCA 59.400 36.000 0.00 0.00 0.00 2.57
2601 3101 5.243730 CAGACCCTGTAATTCCACAAAACAT 59.756 40.000 0.00 0.00 0.00 2.71
2652 3153 2.486592 CACACCCCTTCGGTTGAAATAC 59.513 50.000 0.00 0.00 45.36 1.89
2812 3314 0.183731 GGGCTGTAAGATCAAGGGGG 59.816 60.000 0.00 0.00 34.07 5.40
3080 3769 3.336138 ACTCCGGATCTTCTTGAAACC 57.664 47.619 3.57 0.00 0.00 3.27
3135 3824 1.072159 GCAAGAGGGCTCACAGTGT 59.928 57.895 0.00 0.00 0.00 3.55
3261 3950 2.316108 TGCCGACTGGATAGCTTCATA 58.684 47.619 0.00 0.00 37.49 2.15
3711 4401 4.167307 AGGGAAGAGGTTTTGGTGTAAGAA 59.833 41.667 0.00 0.00 0.00 2.52
3776 4499 3.260884 TCAGGAACAGTGAAGTGATACCC 59.739 47.826 0.00 0.00 0.00 3.69
3820 4543 4.878397 ACAGCCATCAAAATCTACAGCTAC 59.122 41.667 0.00 0.00 0.00 3.58
3837 4596 4.584638 ACCCATTTATCAGTTACAGCCA 57.415 40.909 0.00 0.00 0.00 4.75
3858 4617 8.768397 AGGTCATGTCTTATTGGACTATGTTTA 58.232 33.333 0.00 0.00 37.16 2.01
4080 4839 6.446318 TCACAACTAAAGCAAAATTAGGCAG 58.554 36.000 4.34 0.00 35.20 4.85
4165 4927 9.312904 TCTCTTGAATGAAATTAGGGAACAAAT 57.687 29.630 0.00 0.00 36.07 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.