Multiple sequence alignment - TraesCS3D01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G317000 chr3D 100.000 4936 0 0 1 4936 430049405 430054340 0.000000e+00 9116
1 TraesCS3D01G317000 chr3D 85.635 1441 182 14 859 2291 429909397 429910820 0.000000e+00 1491
2 TraesCS3D01G317000 chr3D 89.709 1030 80 16 2287 3303 429910903 429911919 0.000000e+00 1291
3 TraesCS3D01G317000 chr3D 82.412 1285 218 6 991 2268 429786767 429788050 0.000000e+00 1114
4 TraesCS3D01G317000 chr3D 79.598 1245 218 22 1063 2295 429724364 429725584 0.000000e+00 859
5 TraesCS3D01G317000 chr3D 77.188 1131 212 36 2734 3853 429726901 429727996 7.020000e-173 617
6 TraesCS3D01G317000 chr3D 85.860 587 61 16 3353 3921 429912019 429912601 5.470000e-169 604
7 TraesCS3D01G317000 chr3D 97.611 293 7 0 4196 4488 430058773 430059065 2.050000e-138 503
8 TraesCS3D01G317000 chr3D 100.000 114 0 0 4076 4189 430059066 430059179 1.390000e-50 211
9 TraesCS3D01G317000 chr3D 82.432 222 27 7 7 219 63172022 63172240 3.030000e-42 183
10 TraesCS3D01G317000 chr3D 81.614 223 33 6 5 219 604678066 604678288 1.410000e-40 178
11 TraesCS3D01G317000 chr3D 77.169 219 38 9 10 219 190277469 190277254 3.120000e-22 117
12 TraesCS3D01G317000 chr3B 92.586 1821 93 22 2289 4098 562403146 562404935 0.000000e+00 2577
13 TraesCS3D01G317000 chr3B 94.293 1682 66 11 629 2291 562401382 562403052 0.000000e+00 2547
14 TraesCS3D01G317000 chr3B 82.279 1281 210 15 1000 2270 562272970 562274243 0.000000e+00 1092
15 TraesCS3D01G317000 chr3B 79.598 1245 221 17 1063 2295 561970823 561972046 0.000000e+00 861
16 TraesCS3D01G317000 chr3B 77.485 1137 203 34 2734 3853 561973441 561974541 2.510000e-177 632
17 TraesCS3D01G317000 chr3B 88.889 198 20 1 331 528 562401137 562401332 4.940000e-60 243
18 TraesCS3D01G317000 chr3B 76.298 443 91 12 4478 4912 163143562 163143998 1.790000e-54 224
19 TraesCS3D01G317000 chr3B 79.909 219 32 9 10 219 275298887 275299102 3.080000e-32 150
20 TraesCS3D01G317000 chr3B 76.923 208 45 3 4713 4918 689682074 689681868 1.120000e-21 115
21 TraesCS3D01G317000 chr3A 91.871 1833 106 33 2288 4098 568096483 568098294 0.000000e+00 2519
22 TraesCS3D01G317000 chr3A 94.942 1463 63 4 832 2291 568094928 568096382 0.000000e+00 2281
23 TraesCS3D01G317000 chr3A 82.179 1285 218 9 991 2268 568018312 568019592 0.000000e+00 1094
24 TraesCS3D01G317000 chr3A 78.790 1240 231 20 1063 2292 567975922 567977139 0.000000e+00 804
25 TraesCS3D01G317000 chr3A 83.181 547 36 15 311 826 568094006 568094527 2.710000e-122 449
26 TraesCS3D01G317000 chr6B 90.726 744 63 6 4194 4934 715824219 715823479 0.000000e+00 987
27 TraesCS3D01G317000 chr6B 84.746 649 92 6 4281 4924 20864585 20865231 1.160000e-180 643
28 TraesCS3D01G317000 chr6B 80.000 220 36 7 7 219 448671690 448671472 6.620000e-34 156
29 TraesCS3D01G317000 chr6B 82.836 134 15 6 6 131 278747090 278747223 4.040000e-21 113
30 TraesCS3D01G317000 chr1B 88.844 735 68 12 4198 4926 570643080 570643806 0.000000e+00 891
31 TraesCS3D01G317000 chr1B 86.869 297 28 9 4196 4488 570648575 570648864 6.160000e-84 322
32 TraesCS3D01G317000 chr2B 79.269 1259 220 27 1064 2291 766231938 766233186 0.000000e+00 841
33 TraesCS3D01G317000 chr2B 82.713 457 63 13 2513 2967 766233474 766233916 4.630000e-105 392
34 TraesCS3D01G317000 chr4B 90.240 625 49 8 4317 4936 106056076 106055459 0.000000e+00 806
35 TraesCS3D01G317000 chr4B 95.714 140 6 0 4349 4488 106050645 106050506 4.970000e-55 226
36 TraesCS3D01G317000 chr2A 82.237 456 65 13 2514 2967 755704565 755705006 3.610000e-101 379
37 TraesCS3D01G317000 chr2D 82.035 462 64 15 2512 2967 624304759 624305207 4.660000e-100 375
38 TraesCS3D01G317000 chrUn 76.786 448 92 8 4478 4918 33758540 33758098 1.780000e-59 241
39 TraesCS3D01G317000 chrUn 76.577 444 92 8 4478 4914 33582462 33582900 2.970000e-57 233
40 TraesCS3D01G317000 chrUn 76.339 448 94 8 4478 4918 33879775 33879333 3.840000e-56 230
41 TraesCS3D01G317000 chr4A 76.392 449 92 10 4478 4918 625383003 625383445 3.840000e-56 230
42 TraesCS3D01G317000 chr4A 76.169 449 93 10 4478 4918 625376753 625377195 1.790000e-54 224
43 TraesCS3D01G317000 chr7D 74.041 443 105 7 4482 4918 572013105 572013543 6.570000e-39 172
44 TraesCS3D01G317000 chr7D 81.250 224 28 12 7 219 363798606 363798826 8.500000e-38 169
45 TraesCS3D01G317000 chr7D 78.919 185 28 9 44 219 330845137 330844955 1.120000e-21 115
46 TraesCS3D01G317000 chr4D 79.459 185 27 9 44 219 168211650 168211468 2.410000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G317000 chr3D 430049405 430054340 4935 False 9116.000000 9116 100.000000 1 4936 1 chr3D.!!$F3 4935
1 TraesCS3D01G317000 chr3D 429909397 429912601 3204 False 1128.666667 1491 87.068000 859 3921 3 chr3D.!!$F6 3062
2 TraesCS3D01G317000 chr3D 429786767 429788050 1283 False 1114.000000 1114 82.412000 991 2268 1 chr3D.!!$F2 1277
3 TraesCS3D01G317000 chr3D 429724364 429727996 3632 False 738.000000 859 78.393000 1063 3853 2 chr3D.!!$F5 2790
4 TraesCS3D01G317000 chr3B 562401137 562404935 3798 False 1789.000000 2577 91.922667 331 4098 3 chr3B.!!$F5 3767
5 TraesCS3D01G317000 chr3B 562272970 562274243 1273 False 1092.000000 1092 82.279000 1000 2270 1 chr3B.!!$F3 1270
6 TraesCS3D01G317000 chr3B 561970823 561974541 3718 False 746.500000 861 78.541500 1063 3853 2 chr3B.!!$F4 2790
7 TraesCS3D01G317000 chr3A 568094006 568098294 4288 False 1749.666667 2519 89.998000 311 4098 3 chr3A.!!$F3 3787
8 TraesCS3D01G317000 chr3A 568018312 568019592 1280 False 1094.000000 1094 82.179000 991 2268 1 chr3A.!!$F2 1277
9 TraesCS3D01G317000 chr3A 567975922 567977139 1217 False 804.000000 804 78.790000 1063 2292 1 chr3A.!!$F1 1229
10 TraesCS3D01G317000 chr6B 715823479 715824219 740 True 987.000000 987 90.726000 4194 4934 1 chr6B.!!$R2 740
11 TraesCS3D01G317000 chr6B 20864585 20865231 646 False 643.000000 643 84.746000 4281 4924 1 chr6B.!!$F1 643
12 TraesCS3D01G317000 chr1B 570643080 570643806 726 False 891.000000 891 88.844000 4198 4926 1 chr1B.!!$F1 728
13 TraesCS3D01G317000 chr2B 766231938 766233916 1978 False 616.500000 841 80.991000 1064 2967 2 chr2B.!!$F1 1903
14 TraesCS3D01G317000 chr4B 106055459 106056076 617 True 806.000000 806 90.240000 4317 4936 1 chr4B.!!$R2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.041312 CCTCGCGTTGTGTTTCTTGG 60.041 55.0 5.77 0.00 0.00 3.61 F
199 200 0.041312 CTCGCGTTGTGTTTCTTGGG 60.041 55.0 5.77 0.00 0.00 4.12 F
479 487 0.106708 TGAACAGACAGCAGGGTGAC 59.893 55.0 5.37 0.00 0.00 3.67 F
1423 1884 0.179097 GAGCTCCGATGGAAGTGGAC 60.179 60.0 0.87 0.00 0.00 4.02 F
1735 2202 0.318955 AAACCCCAACGAGACGTACG 60.319 55.0 15.01 15.01 39.99 3.67 F
2487 3891 0.550914 TCAGGGCCAGAAAACACACT 59.449 50.0 6.18 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 2092 0.530744 CCCGGTCGTGAAGATCTTCA 59.469 55.000 30.05 30.05 46.27 3.02 R
1735 2202 1.069358 GGAGCTGATGTAGTAGGTGCC 59.931 57.143 0.00 0.00 0.00 5.01 R
2341 3739 0.249398 AGAAGCACGCCGGAAATAGT 59.751 50.000 5.05 0.00 0.00 2.12 R
2616 4029 0.684479 GGCCAAATCCACCTTCTCCC 60.684 60.000 0.00 0.00 0.00 4.30 R
2923 4426 0.811281 GGTATCCAGGCTGTTGTTGC 59.189 55.000 14.43 0.00 0.00 4.17 R
4191 5796 0.031721 GACCCGGAGCGTAACATAGG 59.968 60.000 0.73 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.696782 CTTGGTCGGTACTCTGTCG 57.303 57.895 0.00 0.00 0.00 4.35
19 20 0.170561 CTTGGTCGGTACTCTGTCGG 59.829 60.000 0.00 0.00 0.00 4.79
20 21 0.250858 TTGGTCGGTACTCTGTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
21 22 0.675837 TGGTCGGTACTCTGTCGGAG 60.676 60.000 7.16 7.16 46.87 4.63
22 23 1.375098 GGTCGGTACTCTGTCGGAGG 61.375 65.000 13.35 0.00 45.83 4.30
23 24 1.077930 TCGGTACTCTGTCGGAGGG 60.078 63.158 13.35 0.11 45.83 4.30
24 25 2.119655 CGGTACTCTGTCGGAGGGG 61.120 68.421 13.35 0.00 45.83 4.79
25 26 1.305623 GGTACTCTGTCGGAGGGGA 59.694 63.158 13.35 0.00 45.83 4.81
26 27 0.324091 GGTACTCTGTCGGAGGGGAA 60.324 60.000 13.35 0.00 45.83 3.97
27 28 0.816373 GTACTCTGTCGGAGGGGAAC 59.184 60.000 13.35 2.48 45.83 3.62
40 41 3.905249 GGAACCCATCACGAAGGC 58.095 61.111 0.00 0.00 0.00 4.35
41 42 2.106683 GGAACCCATCACGAAGGCG 61.107 63.158 0.00 0.00 44.79 5.52
42 43 1.079405 GAACCCATCACGAAGGCGA 60.079 57.895 0.00 0.00 41.64 5.54
43 44 0.462047 GAACCCATCACGAAGGCGAT 60.462 55.000 0.00 0.00 41.64 4.58
44 45 0.462047 AACCCATCACGAAGGCGATC 60.462 55.000 0.00 0.00 41.64 3.69
45 46 1.330655 ACCCATCACGAAGGCGATCT 61.331 55.000 0.00 0.00 41.64 2.75
46 47 0.179073 CCCATCACGAAGGCGATCTT 60.179 55.000 0.00 0.00 41.64 2.40
47 48 1.212616 CCATCACGAAGGCGATCTTC 58.787 55.000 8.36 8.36 46.33 2.87
56 57 3.356529 AAGGCGATCTTCATCAACCTT 57.643 42.857 0.00 0.00 39.11 3.50
57 58 2.636830 AGGCGATCTTCATCAACCTTG 58.363 47.619 0.00 0.00 33.28 3.61
58 59 1.064654 GGCGATCTTCATCAACCTTGC 59.935 52.381 0.00 0.00 0.00 4.01
59 60 2.012673 GCGATCTTCATCAACCTTGCT 58.987 47.619 0.00 0.00 0.00 3.91
60 61 2.223203 GCGATCTTCATCAACCTTGCTG 60.223 50.000 0.00 0.00 0.00 4.41
61 62 2.223203 CGATCTTCATCAACCTTGCTGC 60.223 50.000 0.00 0.00 0.00 5.25
62 63 1.538047 TCTTCATCAACCTTGCTGCC 58.462 50.000 0.00 0.00 0.00 4.85
63 64 1.074405 TCTTCATCAACCTTGCTGCCT 59.926 47.619 0.00 0.00 0.00 4.75
64 65 1.471684 CTTCATCAACCTTGCTGCCTC 59.528 52.381 0.00 0.00 0.00 4.70
65 66 0.322816 TCATCAACCTTGCTGCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
66 67 0.609957 CATCAACCTTGCTGCCTCCA 60.610 55.000 0.00 0.00 0.00 3.86
67 68 0.333993 ATCAACCTTGCTGCCTCCAT 59.666 50.000 0.00 0.00 0.00 3.41
68 69 0.609957 TCAACCTTGCTGCCTCCATG 60.610 55.000 0.00 0.00 0.00 3.66
69 70 0.609957 CAACCTTGCTGCCTCCATGA 60.610 55.000 0.00 0.00 0.00 3.07
70 71 0.333993 AACCTTGCTGCCTCCATGAT 59.666 50.000 0.00 0.00 0.00 2.45
71 72 0.395311 ACCTTGCTGCCTCCATGATG 60.395 55.000 0.00 0.00 0.00 3.07
72 73 0.106868 CCTTGCTGCCTCCATGATGA 60.107 55.000 0.00 0.00 0.00 2.92
73 74 1.022735 CTTGCTGCCTCCATGATGAC 58.977 55.000 0.00 0.00 0.00 3.06
74 75 0.745486 TTGCTGCCTCCATGATGACG 60.745 55.000 0.00 0.00 0.00 4.35
75 76 1.153289 GCTGCCTCCATGATGACGT 60.153 57.895 0.00 0.00 0.00 4.34
76 77 1.156645 GCTGCCTCCATGATGACGTC 61.157 60.000 9.11 9.11 0.00 4.34
77 78 0.873312 CTGCCTCCATGATGACGTCG 60.873 60.000 11.62 0.00 0.00 5.12
78 79 1.141881 GCCTCCATGATGACGTCGT 59.858 57.895 10.75 10.75 0.00 4.34
79 80 0.460284 GCCTCCATGATGACGTCGTT 60.460 55.000 12.40 0.37 0.00 3.85
80 81 2.007049 GCCTCCATGATGACGTCGTTT 61.007 52.381 12.40 0.00 0.00 3.60
81 82 2.346803 CCTCCATGATGACGTCGTTTT 58.653 47.619 12.40 0.00 0.00 2.43
82 83 2.348666 CCTCCATGATGACGTCGTTTTC 59.651 50.000 12.40 6.23 0.00 2.29
83 84 2.993220 CTCCATGATGACGTCGTTTTCA 59.007 45.455 12.40 11.65 0.00 2.69
84 85 2.734606 TCCATGATGACGTCGTTTTCAC 59.265 45.455 12.40 0.00 0.00 3.18
85 86 2.478514 CCATGATGACGTCGTTTTCACA 59.521 45.455 12.40 5.13 0.00 3.58
86 87 3.423515 CCATGATGACGTCGTTTTCACAG 60.424 47.826 12.40 7.95 0.00 3.66
87 88 2.131972 TGATGACGTCGTTTTCACAGG 58.868 47.619 12.40 0.00 0.00 4.00
88 89 2.223852 TGATGACGTCGTTTTCACAGGA 60.224 45.455 12.40 0.00 0.00 3.86
89 90 1.563111 TGACGTCGTTTTCACAGGAC 58.437 50.000 11.62 0.00 0.00 3.85
90 91 0.857287 GACGTCGTTTTCACAGGACC 59.143 55.000 0.00 0.00 0.00 4.46
91 92 0.462789 ACGTCGTTTTCACAGGACCT 59.537 50.000 0.00 0.00 0.00 3.85
92 93 1.682854 ACGTCGTTTTCACAGGACCTA 59.317 47.619 0.00 0.00 0.00 3.08
93 94 2.056577 CGTCGTTTTCACAGGACCTAC 58.943 52.381 0.00 0.00 0.00 3.18
94 95 2.056577 GTCGTTTTCACAGGACCTACG 58.943 52.381 5.98 5.98 0.00 3.51
95 96 1.682854 TCGTTTTCACAGGACCTACGT 59.317 47.619 11.06 0.00 0.00 3.57
96 97 1.790623 CGTTTTCACAGGACCTACGTG 59.209 52.381 0.00 5.74 39.84 4.49
97 98 2.800629 CGTTTTCACAGGACCTACGTGT 60.801 50.000 10.83 0.00 46.48 4.49
98 99 2.798847 GTTTTCACAGGACCTACGTGTC 59.201 50.000 10.83 0.00 44.24 3.67
104 105 4.515404 GACCTACGTGTCCATGGC 57.485 61.111 6.96 2.72 0.00 4.40
105 106 1.594833 GACCTACGTGTCCATGGCA 59.405 57.895 6.96 5.76 0.00 4.92
106 107 0.460284 GACCTACGTGTCCATGGCAG 60.460 60.000 6.96 5.64 0.00 4.85
107 108 1.192146 ACCTACGTGTCCATGGCAGT 61.192 55.000 6.96 10.65 0.00 4.40
108 109 0.821517 CCTACGTGTCCATGGCAGTA 59.178 55.000 6.96 11.14 0.00 2.74
109 110 1.202417 CCTACGTGTCCATGGCAGTAG 60.202 57.143 21.78 21.78 33.42 2.57
110 111 1.476891 CTACGTGTCCATGGCAGTAGT 59.523 52.381 6.96 10.93 0.00 2.73
111 112 0.685097 ACGTGTCCATGGCAGTAGTT 59.315 50.000 6.96 0.00 0.00 2.24
112 113 1.897133 ACGTGTCCATGGCAGTAGTTA 59.103 47.619 6.96 0.00 0.00 2.24
113 114 2.094182 ACGTGTCCATGGCAGTAGTTAG 60.094 50.000 6.96 0.00 0.00 2.34
114 115 2.165641 CGTGTCCATGGCAGTAGTTAGA 59.834 50.000 6.96 0.00 0.00 2.10
115 116 3.181475 CGTGTCCATGGCAGTAGTTAGAT 60.181 47.826 6.96 0.00 0.00 1.98
116 117 4.122776 GTGTCCATGGCAGTAGTTAGATG 58.877 47.826 6.96 0.00 0.00 2.90
117 118 3.134623 TGTCCATGGCAGTAGTTAGATGG 59.865 47.826 6.96 0.00 33.07 3.51
118 119 2.104792 TCCATGGCAGTAGTTAGATGGC 59.895 50.000 6.96 0.00 39.75 4.40
119 120 2.105477 CCATGGCAGTAGTTAGATGGCT 59.895 50.000 0.00 0.00 39.98 4.75
120 121 3.434167 CCATGGCAGTAGTTAGATGGCTT 60.434 47.826 0.00 0.00 39.98 4.35
121 122 4.202441 CATGGCAGTAGTTAGATGGCTTT 58.798 43.478 0.00 0.00 39.98 3.51
122 123 4.301072 TGGCAGTAGTTAGATGGCTTTT 57.699 40.909 0.00 0.00 39.98 2.27
123 124 4.662278 TGGCAGTAGTTAGATGGCTTTTT 58.338 39.130 0.00 0.00 39.98 1.94
162 163 9.762933 ATTTTCAATACAATAATTTCATCCGGG 57.237 29.630 0.00 0.00 0.00 5.73
163 164 8.526667 TTTCAATACAATAATTTCATCCGGGA 57.473 30.769 0.00 0.00 0.00 5.14
164 165 8.704849 TTCAATACAATAATTTCATCCGGGAT 57.295 30.769 2.97 2.97 0.00 3.85
165 166 8.335532 TCAATACAATAATTTCATCCGGGATC 57.664 34.615 6.55 0.00 0.00 3.36
166 167 8.163408 TCAATACAATAATTTCATCCGGGATCT 58.837 33.333 6.55 0.00 0.00 2.75
167 168 9.448438 CAATACAATAATTTCATCCGGGATCTA 57.552 33.333 6.55 0.00 0.00 1.98
170 171 8.567285 ACAATAATTTCATCCGGGATCTATTC 57.433 34.615 6.55 0.00 0.00 1.75
171 172 8.163408 ACAATAATTTCATCCGGGATCTATTCA 58.837 33.333 6.55 0.00 0.00 2.57
172 173 9.013229 CAATAATTTCATCCGGGATCTATTCAA 57.987 33.333 6.55 0.00 0.00 2.69
173 174 9.759473 AATAATTTCATCCGGGATCTATTCAAT 57.241 29.630 6.55 0.00 0.00 2.57
174 175 7.458409 AATTTCATCCGGGATCTATTCAATG 57.542 36.000 6.55 0.00 0.00 2.82
175 176 5.567037 TTCATCCGGGATCTATTCAATGT 57.433 39.130 6.55 0.00 0.00 2.71
176 177 6.680148 TTCATCCGGGATCTATTCAATGTA 57.320 37.500 6.55 0.00 0.00 2.29
177 178 6.680148 TCATCCGGGATCTATTCAATGTAA 57.320 37.500 6.55 0.00 0.00 2.41
178 179 7.257790 TCATCCGGGATCTATTCAATGTAAT 57.742 36.000 6.55 0.00 0.00 1.89
179 180 7.331026 TCATCCGGGATCTATTCAATGTAATC 58.669 38.462 6.55 0.00 0.00 1.75
180 181 6.049955 TCCGGGATCTATTCAATGTAATCC 57.950 41.667 0.00 0.00 33.44 3.01
181 182 5.785423 TCCGGGATCTATTCAATGTAATCCT 59.215 40.000 0.00 0.00 34.42 3.24
182 183 6.070767 TCCGGGATCTATTCAATGTAATCCTC 60.071 42.308 0.00 0.14 34.42 3.71
183 184 5.807520 CGGGATCTATTCAATGTAATCCTCG 59.192 44.000 7.20 6.06 34.42 4.63
184 185 5.582665 GGGATCTATTCAATGTAATCCTCGC 59.417 44.000 7.20 0.00 34.42 5.03
185 186 5.289675 GGATCTATTCAATGTAATCCTCGCG 59.710 44.000 0.00 0.00 31.87 5.87
186 187 5.196341 TCTATTCAATGTAATCCTCGCGT 57.804 39.130 5.77 0.00 0.00 6.01
187 188 5.597806 TCTATTCAATGTAATCCTCGCGTT 58.402 37.500 5.77 0.00 0.00 4.84
188 189 4.536364 ATTCAATGTAATCCTCGCGTTG 57.464 40.909 5.77 0.00 0.00 4.10
189 190 2.967362 TCAATGTAATCCTCGCGTTGT 58.033 42.857 5.77 0.00 32.67 3.32
190 191 2.670905 TCAATGTAATCCTCGCGTTGTG 59.329 45.455 5.77 0.00 32.67 3.33
191 192 2.380084 ATGTAATCCTCGCGTTGTGT 57.620 45.000 5.77 0.00 0.00 3.72
192 193 2.157834 TGTAATCCTCGCGTTGTGTT 57.842 45.000 5.77 0.00 0.00 3.32
193 194 2.485903 TGTAATCCTCGCGTTGTGTTT 58.514 42.857 5.77 0.00 0.00 2.83
194 195 2.477375 TGTAATCCTCGCGTTGTGTTTC 59.523 45.455 5.77 0.00 0.00 2.78
195 196 1.878953 AATCCTCGCGTTGTGTTTCT 58.121 45.000 5.77 0.00 0.00 2.52
196 197 1.878953 ATCCTCGCGTTGTGTTTCTT 58.121 45.000 5.77 0.00 0.00 2.52
197 198 0.934496 TCCTCGCGTTGTGTTTCTTG 59.066 50.000 5.77 0.00 0.00 3.02
198 199 0.041312 CCTCGCGTTGTGTTTCTTGG 60.041 55.000 5.77 0.00 0.00 3.61
199 200 0.041312 CTCGCGTTGTGTTTCTTGGG 60.041 55.000 5.77 0.00 0.00 4.12
200 201 0.462225 TCGCGTTGTGTTTCTTGGGA 60.462 50.000 5.77 0.00 0.00 4.37
201 202 0.591170 CGCGTTGTGTTTCTTGGGAT 59.409 50.000 0.00 0.00 0.00 3.85
202 203 1.399727 CGCGTTGTGTTTCTTGGGATC 60.400 52.381 0.00 0.00 0.00 3.36
203 204 1.068541 GCGTTGTGTTTCTTGGGATCC 60.069 52.381 1.92 1.92 0.00 3.36
204 205 1.196808 CGTTGTGTTTCTTGGGATCCG 59.803 52.381 5.45 0.00 0.00 4.18
205 206 2.500229 GTTGTGTTTCTTGGGATCCGA 58.500 47.619 5.45 0.00 0.00 4.55
206 207 3.081804 GTTGTGTTTCTTGGGATCCGAT 58.918 45.455 5.45 0.00 0.00 4.18
207 208 2.710377 TGTGTTTCTTGGGATCCGATG 58.290 47.619 5.45 4.35 0.00 3.84
208 209 2.304470 TGTGTTTCTTGGGATCCGATGA 59.696 45.455 5.45 6.97 0.00 2.92
209 210 2.939103 GTGTTTCTTGGGATCCGATGAG 59.061 50.000 5.45 0.00 0.00 2.90
210 211 2.571653 TGTTTCTTGGGATCCGATGAGT 59.428 45.455 5.45 0.00 0.00 3.41
211 212 3.009033 TGTTTCTTGGGATCCGATGAGTT 59.991 43.478 5.45 0.00 0.00 3.01
212 213 2.988010 TCTTGGGATCCGATGAGTTG 57.012 50.000 5.45 0.00 0.00 3.16
213 214 2.187958 TCTTGGGATCCGATGAGTTGT 58.812 47.619 5.45 0.00 0.00 3.32
214 215 2.093500 TCTTGGGATCCGATGAGTTGTG 60.093 50.000 5.45 0.00 0.00 3.33
215 216 0.541392 TGGGATCCGATGAGTTGTGG 59.459 55.000 5.45 0.00 0.00 4.17
216 217 0.179045 GGGATCCGATGAGTTGTGGG 60.179 60.000 5.45 0.00 0.00 4.61
217 218 0.541863 GGATCCGATGAGTTGTGGGT 59.458 55.000 0.00 0.00 0.00 4.51
218 219 1.065418 GGATCCGATGAGTTGTGGGTT 60.065 52.381 0.00 0.00 0.00 4.11
219 220 2.009774 GATCCGATGAGTTGTGGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
220 221 0.762418 TCCGATGAGTTGTGGGTTGT 59.238 50.000 0.00 0.00 0.00 3.32
221 222 0.874390 CCGATGAGTTGTGGGTTGTG 59.126 55.000 0.00 0.00 0.00 3.33
222 223 1.542328 CCGATGAGTTGTGGGTTGTGA 60.542 52.381 0.00 0.00 0.00 3.58
223 224 2.426522 CGATGAGTTGTGGGTTGTGAT 58.573 47.619 0.00 0.00 0.00 3.06
224 225 2.160219 CGATGAGTTGTGGGTTGTGATG 59.840 50.000 0.00 0.00 0.00 3.07
225 226 2.727123 TGAGTTGTGGGTTGTGATGT 57.273 45.000 0.00 0.00 0.00 3.06
226 227 2.296792 TGAGTTGTGGGTTGTGATGTG 58.703 47.619 0.00 0.00 0.00 3.21
227 228 2.297701 GAGTTGTGGGTTGTGATGTGT 58.702 47.619 0.00 0.00 0.00 3.72
228 229 2.687935 GAGTTGTGGGTTGTGATGTGTT 59.312 45.455 0.00 0.00 0.00 3.32
229 230 2.426738 AGTTGTGGGTTGTGATGTGTTG 59.573 45.455 0.00 0.00 0.00 3.33
230 231 2.136298 TGTGGGTTGTGATGTGTTGT 57.864 45.000 0.00 0.00 0.00 3.32
231 232 1.747924 TGTGGGTTGTGATGTGTTGTG 59.252 47.619 0.00 0.00 0.00 3.33
232 233 1.748493 GTGGGTTGTGATGTGTTGTGT 59.252 47.619 0.00 0.00 0.00 3.72
233 234 2.165437 GTGGGTTGTGATGTGTTGTGTT 59.835 45.455 0.00 0.00 0.00 3.32
234 235 2.165234 TGGGTTGTGATGTGTTGTGTTG 59.835 45.455 0.00 0.00 0.00 3.33
235 236 2.425312 GGGTTGTGATGTGTTGTGTTGA 59.575 45.455 0.00 0.00 0.00 3.18
236 237 3.489059 GGGTTGTGATGTGTTGTGTTGAG 60.489 47.826 0.00 0.00 0.00 3.02
237 238 3.128589 GGTTGTGATGTGTTGTGTTGAGT 59.871 43.478 0.00 0.00 0.00 3.41
238 239 4.380444 GGTTGTGATGTGTTGTGTTGAGTT 60.380 41.667 0.00 0.00 0.00 3.01
239 240 4.354071 TGTGATGTGTTGTGTTGAGTTG 57.646 40.909 0.00 0.00 0.00 3.16
240 241 3.755905 TGTGATGTGTTGTGTTGAGTTGT 59.244 39.130 0.00 0.00 0.00 3.32
241 242 4.142708 TGTGATGTGTTGTGTTGAGTTGTC 60.143 41.667 0.00 0.00 0.00 3.18
242 243 3.063316 TGATGTGTTGTGTTGAGTTGTCG 59.937 43.478 0.00 0.00 0.00 4.35
243 244 2.418692 TGTGTTGTGTTGAGTTGTCGT 58.581 42.857 0.00 0.00 0.00 4.34
244 245 2.158645 TGTGTTGTGTTGAGTTGTCGTG 59.841 45.455 0.00 0.00 0.00 4.35
245 246 2.158841 GTGTTGTGTTGAGTTGTCGTGT 59.841 45.455 0.00 0.00 0.00 4.49
246 247 2.158645 TGTTGTGTTGAGTTGTCGTGTG 59.841 45.455 0.00 0.00 0.00 3.82
247 248 2.087501 TGTGTTGAGTTGTCGTGTGT 57.912 45.000 0.00 0.00 0.00 3.72
248 249 1.729517 TGTGTTGAGTTGTCGTGTGTG 59.270 47.619 0.00 0.00 0.00 3.82
249 250 1.730064 GTGTTGAGTTGTCGTGTGTGT 59.270 47.619 0.00 0.00 0.00 3.72
250 251 2.158841 GTGTTGAGTTGTCGTGTGTGTT 59.841 45.455 0.00 0.00 0.00 3.32
251 252 2.158645 TGTTGAGTTGTCGTGTGTGTTG 59.841 45.455 0.00 0.00 0.00 3.33
252 253 2.371910 TGAGTTGTCGTGTGTGTTGA 57.628 45.000 0.00 0.00 0.00 3.18
253 254 2.267426 TGAGTTGTCGTGTGTGTTGAG 58.733 47.619 0.00 0.00 0.00 3.02
254 255 2.268298 GAGTTGTCGTGTGTGTTGAGT 58.732 47.619 0.00 0.00 0.00 3.41
255 256 1.999735 AGTTGTCGTGTGTGTTGAGTG 59.000 47.619 0.00 0.00 0.00 3.51
256 257 1.062002 GTTGTCGTGTGTGTTGAGTGG 59.938 52.381 0.00 0.00 0.00 4.00
257 258 0.461163 TGTCGTGTGTGTTGAGTGGG 60.461 55.000 0.00 0.00 0.00 4.61
258 259 0.461339 GTCGTGTGTGTTGAGTGGGT 60.461 55.000 0.00 0.00 0.00 4.51
259 260 0.250793 TCGTGTGTGTTGAGTGGGTT 59.749 50.000 0.00 0.00 0.00 4.11
260 261 0.376852 CGTGTGTGTTGAGTGGGTTG 59.623 55.000 0.00 0.00 0.00 3.77
261 262 1.459450 GTGTGTGTTGAGTGGGTTGT 58.541 50.000 0.00 0.00 0.00 3.32
262 263 1.132262 GTGTGTGTTGAGTGGGTTGTG 59.868 52.381 0.00 0.00 0.00 3.33
263 264 0.738389 GTGTGTTGAGTGGGTTGTGG 59.262 55.000 0.00 0.00 0.00 4.17
264 265 0.395036 TGTGTTGAGTGGGTTGTGGG 60.395 55.000 0.00 0.00 0.00 4.61
265 266 0.395173 GTGTTGAGTGGGTTGTGGGT 60.395 55.000 0.00 0.00 0.00 4.51
266 267 0.106918 TGTTGAGTGGGTTGTGGGTC 60.107 55.000 0.00 0.00 0.00 4.46
267 268 0.182775 GTTGAGTGGGTTGTGGGTCT 59.817 55.000 0.00 0.00 0.00 3.85
268 269 0.923358 TTGAGTGGGTTGTGGGTCTT 59.077 50.000 0.00 0.00 0.00 3.01
269 270 0.923358 TGAGTGGGTTGTGGGTCTTT 59.077 50.000 0.00 0.00 0.00 2.52
270 271 1.286553 TGAGTGGGTTGTGGGTCTTTT 59.713 47.619 0.00 0.00 0.00 2.27
271 272 1.954382 GAGTGGGTTGTGGGTCTTTTC 59.046 52.381 0.00 0.00 0.00 2.29
272 273 0.666374 GTGGGTTGTGGGTCTTTTCG 59.334 55.000 0.00 0.00 0.00 3.46
273 274 0.256464 TGGGTTGTGGGTCTTTTCGT 59.744 50.000 0.00 0.00 0.00 3.85
274 275 0.949397 GGGTTGTGGGTCTTTTCGTC 59.051 55.000 0.00 0.00 0.00 4.20
275 276 1.670791 GGTTGTGGGTCTTTTCGTCA 58.329 50.000 0.00 0.00 0.00 4.35
276 277 2.227194 GGTTGTGGGTCTTTTCGTCAT 58.773 47.619 0.00 0.00 0.00 3.06
277 278 2.621526 GGTTGTGGGTCTTTTCGTCATT 59.378 45.455 0.00 0.00 0.00 2.57
278 279 3.550030 GGTTGTGGGTCTTTTCGTCATTG 60.550 47.826 0.00 0.00 0.00 2.82
279 280 3.201353 TGTGGGTCTTTTCGTCATTGA 57.799 42.857 0.00 0.00 0.00 2.57
280 281 3.138304 TGTGGGTCTTTTCGTCATTGAG 58.862 45.455 0.00 0.00 0.00 3.02
281 282 3.139077 GTGGGTCTTTTCGTCATTGAGT 58.861 45.455 0.00 0.00 0.00 3.41
282 283 3.564225 GTGGGTCTTTTCGTCATTGAGTT 59.436 43.478 0.00 0.00 0.00 3.01
283 284 4.753107 GTGGGTCTTTTCGTCATTGAGTTA 59.247 41.667 0.00 0.00 0.00 2.24
284 285 4.994852 TGGGTCTTTTCGTCATTGAGTTAG 59.005 41.667 0.00 0.00 0.00 2.34
285 286 4.142881 GGGTCTTTTCGTCATTGAGTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
286 287 4.451096 GGTCTTTTCGTCATTGAGTTAGCA 59.549 41.667 0.00 0.00 0.00 3.49
287 288 5.374898 GTCTTTTCGTCATTGAGTTAGCAC 58.625 41.667 0.00 0.00 0.00 4.40
288 289 4.451096 TCTTTTCGTCATTGAGTTAGCACC 59.549 41.667 0.00 0.00 0.00 5.01
289 290 1.990799 TCGTCATTGAGTTAGCACCG 58.009 50.000 0.00 0.00 0.00 4.94
290 291 0.999406 CGTCATTGAGTTAGCACCGG 59.001 55.000 0.00 0.00 0.00 5.28
291 292 1.403647 CGTCATTGAGTTAGCACCGGA 60.404 52.381 9.46 0.00 0.00 5.14
292 293 2.000447 GTCATTGAGTTAGCACCGGAC 59.000 52.381 9.46 0.00 0.00 4.79
293 294 1.899814 TCATTGAGTTAGCACCGGACT 59.100 47.619 9.46 7.87 0.00 3.85
294 295 2.094182 TCATTGAGTTAGCACCGGACTC 60.094 50.000 9.46 11.24 40.09 3.36
295 296 0.242825 TTGAGTTAGCACCGGACTCG 59.757 55.000 9.46 0.00 42.02 4.18
305 306 3.562635 CGGACTCGGCCTTGTTTC 58.437 61.111 0.00 0.00 0.00 2.78
306 307 1.004918 CGGACTCGGCCTTGTTTCT 60.005 57.895 0.00 0.00 0.00 2.52
307 308 0.245539 CGGACTCGGCCTTGTTTCTA 59.754 55.000 0.00 0.00 0.00 2.10
308 309 1.337447 CGGACTCGGCCTTGTTTCTAA 60.337 52.381 0.00 0.00 0.00 2.10
309 310 2.774687 GGACTCGGCCTTGTTTCTAAA 58.225 47.619 0.00 0.00 0.00 1.85
310 311 3.143728 GGACTCGGCCTTGTTTCTAAAA 58.856 45.455 0.00 0.00 0.00 1.52
311 312 3.566742 GGACTCGGCCTTGTTTCTAAAAA 59.433 43.478 0.00 0.00 0.00 1.94
312 313 4.320275 GGACTCGGCCTTGTTTCTAAAAAG 60.320 45.833 0.00 0.00 0.00 2.27
313 314 4.457466 ACTCGGCCTTGTTTCTAAAAAGA 58.543 39.130 0.00 0.00 0.00 2.52
314 315 4.885325 ACTCGGCCTTGTTTCTAAAAAGAA 59.115 37.500 0.00 0.00 0.00 2.52
315 316 5.358725 ACTCGGCCTTGTTTCTAAAAAGAAA 59.641 36.000 0.00 0.00 35.67 2.52
369 370 4.674101 GCATAATGAGCAACGTTTTAGCCA 60.674 41.667 0.00 0.55 0.00 4.75
418 419 2.109126 GGTGGTGCGATGCTCCTTC 61.109 63.158 10.79 4.81 42.02 3.46
444 445 2.246739 CCGCATCACAGGCCGTATG 61.247 63.158 0.00 0.94 0.00 2.39
470 478 2.880268 TCCAAGTGCATTGAACAGACAG 59.120 45.455 9.56 0.00 41.83 3.51
474 482 1.068748 GTGCATTGAACAGACAGCAGG 60.069 52.381 0.00 0.00 32.03 4.85
479 487 0.106708 TGAACAGACAGCAGGGTGAC 59.893 55.000 5.37 0.00 0.00 3.67
496 504 4.399934 GGGTGACTGAACCAAAACTGTTTA 59.600 41.667 6.16 0.00 42.47 2.01
574 588 7.440198 CATCAGGATCAGATTGCTAGTTTCTA 58.560 38.462 0.00 0.00 0.00 2.10
575 589 7.609097 TCAGGATCAGATTGCTAGTTTCTAT 57.391 36.000 0.00 0.00 0.00 1.98
576 590 8.712228 TCAGGATCAGATTGCTAGTTTCTATA 57.288 34.615 0.00 0.00 0.00 1.31
611 625 1.228429 AAAACCCCGCTGCTAGCAA 60.228 52.632 19.86 2.68 42.58 3.91
612 626 0.825840 AAAACCCCGCTGCTAGCAAA 60.826 50.000 19.86 0.00 42.58 3.68
613 627 0.825840 AAACCCCGCTGCTAGCAAAA 60.826 50.000 19.86 0.00 42.58 2.44
614 628 0.825840 AACCCCGCTGCTAGCAAAAA 60.826 50.000 19.86 0.00 42.58 1.94
615 629 1.244019 ACCCCGCTGCTAGCAAAAAG 61.244 55.000 19.86 8.14 42.58 2.27
616 630 0.960364 CCCCGCTGCTAGCAAAAAGA 60.960 55.000 19.86 0.00 42.58 2.52
617 631 0.449388 CCCGCTGCTAGCAAAAAGAG 59.551 55.000 19.86 8.61 42.58 2.85
618 632 1.442769 CCGCTGCTAGCAAAAAGAGA 58.557 50.000 19.86 0.00 42.58 3.10
619 633 1.806542 CCGCTGCTAGCAAAAAGAGAA 59.193 47.619 19.86 0.00 42.58 2.87
620 634 2.226437 CCGCTGCTAGCAAAAAGAGAAA 59.774 45.455 19.86 0.00 42.58 2.52
621 635 3.304659 CCGCTGCTAGCAAAAAGAGAAAA 60.305 43.478 19.86 0.00 42.58 2.29
622 636 4.290155 CGCTGCTAGCAAAAAGAGAAAAA 58.710 39.130 19.86 0.00 42.58 1.94
649 663 4.458164 GCAAGTGCACCGCAATAC 57.542 55.556 20.72 0.00 41.47 1.89
651 665 0.179189 GCAAGTGCACCGCAATACTC 60.179 55.000 20.72 0.00 41.47 2.59
700 715 5.692115 TGACCACACATCCAAGTATACAT 57.308 39.130 5.50 0.00 0.00 2.29
727 748 7.664082 TTTTTCTTCTCTGATGATGACTGAC 57.336 36.000 0.00 0.00 0.00 3.51
728 749 5.990120 TTCTTCTCTGATGATGACTGACA 57.010 39.130 0.00 0.00 0.00 3.58
729 750 6.541934 TTCTTCTCTGATGATGACTGACAT 57.458 37.500 0.00 0.00 42.47 3.06
730 751 5.903810 TCTTCTCTGATGATGACTGACATG 58.096 41.667 0.00 0.00 39.56 3.21
731 752 5.421374 TCTTCTCTGATGATGACTGACATGT 59.579 40.000 0.00 0.00 39.56 3.21
733 754 6.780457 TCTCTGATGATGACTGACATGTAA 57.220 37.500 0.00 0.00 39.56 2.41
813 850 0.605319 GCTGTTCCGGATGTTGACCA 60.605 55.000 4.15 0.00 0.00 4.02
826 863 1.686052 GTTGACCAGCCCACATTTTCA 59.314 47.619 0.00 0.00 0.00 2.69
907 1342 8.367911 ACTAGAGTATCAGTTTTCATTCACACA 58.632 33.333 0.00 0.00 37.82 3.72
908 1343 7.664082 AGAGTATCAGTTTTCATTCACACAG 57.336 36.000 0.00 0.00 37.82 3.66
909 1344 7.220030 AGAGTATCAGTTTTCATTCACACAGT 58.780 34.615 0.00 0.00 37.82 3.55
910 1345 8.367911 AGAGTATCAGTTTTCATTCACACAGTA 58.632 33.333 0.00 0.00 37.82 2.74
911 1346 9.155975 GAGTATCAGTTTTCATTCACACAGTAT 57.844 33.333 0.00 0.00 33.17 2.12
1087 1533 1.972198 GACACCATCGACCTGACCA 59.028 57.895 0.00 0.00 0.00 4.02
1423 1884 0.179097 GAGCTCCGATGGAAGTGGAC 60.179 60.000 0.87 0.00 0.00 4.02
1438 1905 3.749064 GACCGAGCCAGAGCGTGA 61.749 66.667 0.00 0.00 46.67 4.35
1582 2049 1.135170 GGGAGTACACGGTCAAGCTAC 60.135 57.143 0.00 0.00 0.00 3.58
1735 2202 0.318955 AAACCCCAACGAGACGTACG 60.319 55.000 15.01 15.01 39.99 3.67
1756 2223 2.035632 GCACCTACTACATCAGCTCCT 58.964 52.381 0.00 0.00 0.00 3.69
1839 2312 3.419759 GACGGCGCGTGGAACAAT 61.420 61.111 6.90 0.00 44.16 2.71
2055 2531 1.652563 GTTCTGGCCGGTGAACAAC 59.347 57.895 22.79 12.56 41.35 3.32
2229 2705 0.734889 ATCTGCTTAACATGCGGCAC 59.265 50.000 4.03 0.00 36.79 5.01
2486 3890 1.398692 TTCAGGGCCAGAAAACACAC 58.601 50.000 9.14 0.00 0.00 3.82
2487 3891 0.550914 TCAGGGCCAGAAAACACACT 59.449 50.000 6.18 0.00 0.00 3.55
2488 3892 0.670162 CAGGGCCAGAAAACACACTG 59.330 55.000 6.18 0.00 0.00 3.66
2505 3909 4.333417 GCTGATTTGAGCCCAGCT 57.667 55.556 0.00 0.00 46.96 4.24
2656 4069 4.816925 GCCCTGTCTATTTGGTAAGATCAC 59.183 45.833 0.00 0.00 0.00 3.06
2923 4426 3.010088 TCGTGTACGAGTTCATGCG 57.990 52.632 2.55 0.00 44.22 4.73
2967 4470 7.040478 CCTTCATATTTGGTCAGTTCAGTTCAA 60.040 37.037 0.00 0.00 0.00 2.69
2975 4479 4.504097 GGTCAGTTCAGTTCAACAATTTGC 59.496 41.667 0.00 0.00 32.17 3.68
2995 4500 0.581529 TGCACAAGAGAAAACTCGCG 59.418 50.000 0.00 0.00 0.00 5.87
3017 4524 5.049405 GCGACCACTTTCCTATATCAAATGG 60.049 44.000 0.00 0.00 0.00 3.16
3345 4924 0.534412 ACTGTTCTCGAGATGGGCTG 59.466 55.000 17.44 12.62 0.00 4.85
3502 5081 4.142160 GGCAAGAAAATCCGAGGCTTTTAT 60.142 41.667 3.97 0.00 0.00 1.40
3543 5122 4.650754 ACCTCTGCGGTTATGTAAGTAG 57.349 45.455 0.00 0.00 46.37 2.57
3547 5126 4.275810 TCTGCGGTTATGTAAGTAGGAGT 58.724 43.478 0.00 0.00 0.00 3.85
3548 5127 5.439721 TCTGCGGTTATGTAAGTAGGAGTA 58.560 41.667 0.00 0.00 0.00 2.59
3549 5128 6.066690 TCTGCGGTTATGTAAGTAGGAGTAT 58.933 40.000 0.00 0.00 0.00 2.12
3550 5129 7.226441 TCTGCGGTTATGTAAGTAGGAGTATA 58.774 38.462 0.00 0.00 0.00 1.47
3551 5130 7.886970 TCTGCGGTTATGTAAGTAGGAGTATAT 59.113 37.037 0.00 0.00 0.00 0.86
3552 5131 9.170734 CTGCGGTTATGTAAGTAGGAGTATATA 57.829 37.037 0.00 0.00 0.00 0.86
3553 5132 9.690913 TGCGGTTATGTAAGTAGGAGTATATAT 57.309 33.333 0.00 0.00 0.00 0.86
3573 5157 2.699073 AGCATGATTAGCTGCCACG 58.301 52.632 0.00 0.00 41.61 4.94
3574 5158 0.816825 AGCATGATTAGCTGCCACGG 60.817 55.000 0.00 0.00 41.61 4.94
3588 5178 0.739813 CCACGGGTGGTCGATCTTTC 60.740 60.000 9.72 0.00 45.53 2.62
3679 5274 4.135153 CACGGAGCTCCTGGACGG 62.135 72.222 29.73 15.71 0.00 4.79
3734 5329 1.032114 GGAGGTGCATACAGGTTGCC 61.032 60.000 0.00 0.00 39.39 4.52
3842 5437 3.814268 CCAAATGAGCCCGGCGTG 61.814 66.667 6.01 0.00 0.00 5.34
3950 5551 9.905713 AGCAAAAGTTAGTGGAAATCTATGATA 57.094 29.630 0.00 0.00 0.00 2.15
3991 5592 7.454225 AGTTTAGCTTGGGATGGAATACTATC 58.546 38.462 0.00 0.00 34.04 2.08
4055 5660 2.423577 CTCCCTGGTGAAGTTTAACCG 58.576 52.381 0.00 1.03 39.47 4.44
4071 5676 4.143333 CGTGACACGCCTAGGGGG 62.143 72.222 27.87 18.93 41.67 5.40
4078 5683 0.546598 CACGCCTAGGGGGAAGAAAT 59.453 55.000 27.87 3.94 39.07 2.17
4085 5690 2.808906 AGGGGGAAGAAATGTAGTGC 57.191 50.000 0.00 0.00 0.00 4.40
4101 5706 8.614994 AATGTAGTGCGTTCTAATTTATTTGC 57.385 30.769 0.00 0.00 0.00 3.68
4102 5707 7.372451 TGTAGTGCGTTCTAATTTATTTGCT 57.628 32.000 0.00 0.00 0.00 3.91
4103 5708 7.812648 TGTAGTGCGTTCTAATTTATTTGCTT 58.187 30.769 0.00 0.00 0.00 3.91
4104 5709 8.293867 TGTAGTGCGTTCTAATTTATTTGCTTT 58.706 29.630 0.00 0.00 0.00 3.51
4105 5710 9.124807 GTAGTGCGTTCTAATTTATTTGCTTTT 57.875 29.630 0.00 0.00 0.00 2.27
4107 5712 9.855021 AGTGCGTTCTAATTTATTTGCTTTTAT 57.145 25.926 0.00 0.00 0.00 1.40
4109 5714 9.296400 TGCGTTCTAATTTATTTGCTTTTATCC 57.704 29.630 0.00 0.00 0.00 2.59
4110 5715 9.516314 GCGTTCTAATTTATTTGCTTTTATCCT 57.484 29.630 0.00 0.00 0.00 3.24
4122 5727 7.630242 TTGCTTTTATCCTATGTTTGAGGAG 57.370 36.000 0.00 0.00 46.27 3.69
4123 5728 6.122277 TGCTTTTATCCTATGTTTGAGGAGG 58.878 40.000 0.00 0.00 46.27 4.30
4124 5729 6.069673 TGCTTTTATCCTATGTTTGAGGAGGA 60.070 38.462 0.00 0.00 46.27 3.71
4125 5730 6.484977 GCTTTTATCCTATGTTTGAGGAGGAG 59.515 42.308 0.00 0.00 46.27 3.69
4126 5731 7.635971 GCTTTTATCCTATGTTTGAGGAGGAGA 60.636 40.741 0.00 0.00 46.27 3.71
4127 5732 7.749377 TTTATCCTATGTTTGAGGAGGAGAA 57.251 36.000 0.00 0.00 46.27 2.87
4128 5733 5.885449 ATCCTATGTTTGAGGAGGAGAAG 57.115 43.478 0.00 0.00 46.27 2.85
4129 5734 4.947883 TCCTATGTTTGAGGAGGAGAAGA 58.052 43.478 0.00 0.00 38.22 2.87
4130 5735 5.533112 TCCTATGTTTGAGGAGGAGAAGAT 58.467 41.667 0.00 0.00 38.22 2.40
4131 5736 5.600484 TCCTATGTTTGAGGAGGAGAAGATC 59.400 44.000 0.00 0.00 38.22 2.75
4132 5737 5.602145 CCTATGTTTGAGGAGGAGAAGATCT 59.398 44.000 0.00 0.00 35.99 2.75
4133 5738 4.815533 TGTTTGAGGAGGAGAAGATCTG 57.184 45.455 0.00 0.00 0.00 2.90
4134 5739 4.420206 TGTTTGAGGAGGAGAAGATCTGA 58.580 43.478 0.00 0.00 0.00 3.27
4135 5740 5.028802 TGTTTGAGGAGGAGAAGATCTGAT 58.971 41.667 0.00 0.00 0.00 2.90
4136 5741 5.128499 TGTTTGAGGAGGAGAAGATCTGATC 59.872 44.000 9.65 9.65 0.00 2.92
4137 5742 4.812403 TGAGGAGGAGAAGATCTGATCT 57.188 45.455 14.31 14.31 42.61 2.75
4138 5743 4.472496 TGAGGAGGAGAAGATCTGATCTG 58.528 47.826 20.20 0.00 40.13 2.90
4139 5744 4.167697 TGAGGAGGAGAAGATCTGATCTGA 59.832 45.833 20.20 4.63 40.13 3.27
4140 5745 4.733165 AGGAGGAGAAGATCTGATCTGAG 58.267 47.826 20.20 0.00 40.13 3.35
4141 5746 3.256631 GGAGGAGAAGATCTGATCTGAGC 59.743 52.174 20.20 9.61 40.13 4.26
4142 5747 3.890756 GAGGAGAAGATCTGATCTGAGCA 59.109 47.826 20.20 0.00 40.13 4.26
4143 5748 4.288398 AGGAGAAGATCTGATCTGAGCAA 58.712 43.478 20.20 0.00 40.13 3.91
4144 5749 4.903049 AGGAGAAGATCTGATCTGAGCAAT 59.097 41.667 20.20 4.03 40.13 3.56
4145 5750 5.011329 AGGAGAAGATCTGATCTGAGCAATC 59.989 44.000 20.20 12.65 40.13 2.67
4146 5751 4.873817 AGAAGATCTGATCTGAGCAATCG 58.126 43.478 20.20 0.00 40.13 3.34
4147 5752 4.341806 AGAAGATCTGATCTGAGCAATCGT 59.658 41.667 20.20 1.85 40.13 3.73
4148 5753 4.241590 AGATCTGATCTGAGCAATCGTC 57.758 45.455 18.93 5.10 38.44 4.20
4149 5754 3.890756 AGATCTGATCTGAGCAATCGTCT 59.109 43.478 18.93 7.11 38.44 4.18
4150 5755 3.706802 TCTGATCTGAGCAATCGTCTC 57.293 47.619 0.00 0.00 0.00 3.36
4151 5756 2.360483 TCTGATCTGAGCAATCGTCTCC 59.640 50.000 0.00 0.00 0.00 3.71
4152 5757 2.100418 CTGATCTGAGCAATCGTCTCCA 59.900 50.000 0.00 0.00 0.00 3.86
4153 5758 2.697229 TGATCTGAGCAATCGTCTCCAT 59.303 45.455 0.00 0.00 0.00 3.41
4154 5759 2.591571 TCTGAGCAATCGTCTCCATG 57.408 50.000 0.00 0.00 0.00 3.66
4155 5760 2.102578 TCTGAGCAATCGTCTCCATGA 58.897 47.619 0.00 0.00 0.00 3.07
4156 5761 2.100418 TCTGAGCAATCGTCTCCATGAG 59.900 50.000 0.00 0.00 0.00 2.90
4157 5762 2.100418 CTGAGCAATCGTCTCCATGAGA 59.900 50.000 0.00 0.00 36.22 3.27
4158 5763 2.100418 TGAGCAATCGTCTCCATGAGAG 59.900 50.000 0.00 0.00 39.53 3.20
4159 5764 2.100584 GAGCAATCGTCTCCATGAGAGT 59.899 50.000 9.98 0.00 43.71 3.24
4160 5765 3.291584 AGCAATCGTCTCCATGAGAGTA 58.708 45.455 9.98 0.92 43.71 2.59
4161 5766 3.067461 AGCAATCGTCTCCATGAGAGTAC 59.933 47.826 9.98 0.00 43.71 2.73
4162 5767 3.067461 GCAATCGTCTCCATGAGAGTACT 59.933 47.826 0.00 0.00 43.71 2.73
4163 5768 4.605968 CAATCGTCTCCATGAGAGTACTG 58.394 47.826 0.00 0.00 43.71 2.74
4164 5769 3.629142 TCGTCTCCATGAGAGTACTGA 57.371 47.619 0.00 0.00 43.71 3.41
4165 5770 3.951663 TCGTCTCCATGAGAGTACTGAA 58.048 45.455 0.00 0.00 43.71 3.02
4166 5771 3.942115 TCGTCTCCATGAGAGTACTGAAG 59.058 47.826 0.00 0.00 43.71 3.02
4167 5772 3.488384 CGTCTCCATGAGAGTACTGAAGC 60.488 52.174 0.00 0.00 43.71 3.86
4168 5773 3.699038 GTCTCCATGAGAGTACTGAAGCT 59.301 47.826 0.00 0.00 43.71 3.74
4169 5774 3.698539 TCTCCATGAGAGTACTGAAGCTG 59.301 47.826 0.00 0.00 43.71 4.24
4170 5775 3.435275 TCCATGAGAGTACTGAAGCTGT 58.565 45.455 0.00 0.00 0.00 4.40
4171 5776 4.600062 TCCATGAGAGTACTGAAGCTGTA 58.400 43.478 0.00 0.00 0.00 2.74
4172 5777 4.399618 TCCATGAGAGTACTGAAGCTGTAC 59.600 45.833 0.00 4.99 38.48 2.90
4173 5778 4.346970 CATGAGAGTACTGAAGCTGTACG 58.653 47.826 0.00 0.00 41.46 3.67
4174 5779 3.671716 TGAGAGTACTGAAGCTGTACGA 58.328 45.455 0.00 0.00 41.46 3.43
4175 5780 3.685272 TGAGAGTACTGAAGCTGTACGAG 59.315 47.826 0.00 0.00 41.46 4.18
4188 5793 5.485662 GCTGTACGAGCTTGGAATATTTT 57.514 39.130 5.79 0.00 45.21 1.82
4189 5794 6.598753 GCTGTACGAGCTTGGAATATTTTA 57.401 37.500 5.79 0.00 45.21 1.52
4190 5795 7.190920 GCTGTACGAGCTTGGAATATTTTAT 57.809 36.000 5.79 0.00 45.21 1.40
4191 5796 7.291567 GCTGTACGAGCTTGGAATATTTTATC 58.708 38.462 5.79 0.00 45.21 1.75
4192 5797 7.571428 GCTGTACGAGCTTGGAATATTTTATCC 60.571 40.741 5.79 0.00 45.21 2.59
4208 5813 0.966920 ATCCTATGTTACGCTCCGGG 59.033 55.000 0.00 0.00 0.00 5.73
4211 5816 1.030457 CTATGTTACGCTCCGGGTCT 58.970 55.000 0.00 0.00 0.00 3.85
4214 5819 2.346766 TGTTACGCTCCGGGTCTATA 57.653 50.000 0.00 0.00 0.00 1.31
4215 5820 2.224606 TGTTACGCTCCGGGTCTATAG 58.775 52.381 0.00 0.00 0.00 1.31
4237 5843 4.137543 GCTAGCAATATAGGTGGCTGTTT 58.862 43.478 10.63 0.00 39.89 2.83
4238 5844 5.305585 GCTAGCAATATAGGTGGCTGTTTA 58.694 41.667 10.63 0.00 39.89 2.01
4239 5845 5.179555 GCTAGCAATATAGGTGGCTGTTTAC 59.820 44.000 10.63 0.00 39.89 2.01
4240 5846 5.110814 AGCAATATAGGTGGCTGTTTACA 57.889 39.130 0.00 0.00 34.83 2.41
4241 5847 5.126067 AGCAATATAGGTGGCTGTTTACAG 58.874 41.667 5.52 5.52 46.40 2.74
4261 5867 6.031751 ACAGACTCAGAGTTACAAGAATCC 57.968 41.667 4.05 0.00 0.00 3.01
4341 5950 0.325671 TTCTTCGATGCCCCTCTCCT 60.326 55.000 0.00 0.00 0.00 3.69
4351 5960 0.621082 CCCCTCTCCTGAAAACCCTC 59.379 60.000 0.00 0.00 0.00 4.30
4365 5974 0.979709 ACCCTCGCCCTACTTAACCC 60.980 60.000 0.00 0.00 0.00 4.11
4384 5993 2.114411 GCTCCGGGTGTCCCAAAA 59.886 61.111 0.00 0.00 45.83 2.44
4428 6037 3.466791 CTCCGAATGCGATGGGCCT 62.467 63.158 4.53 0.00 42.61 5.19
4544 6153 2.202479 GCGCTCGGAAAATGGTGC 60.202 61.111 0.00 0.00 0.00 5.01
4567 6177 2.040442 TCTGGCCGATCCTCCCAA 59.960 61.111 0.00 0.00 35.26 4.12
4672 6282 3.117738 CCAGGATTTCTTCTGGCATAGGT 60.118 47.826 0.00 0.00 43.22 3.08
4805 6415 1.003355 AGCTTGTACGCCACTGCAT 60.003 52.632 0.00 0.00 37.32 3.96
4929 6540 1.153168 CCAATCGCCCACCTCGAAT 60.153 57.895 0.00 0.00 39.54 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.170561 CCGACAGAGTACCGACCAAG 59.829 60.000 0.00 0.00 0.00 3.61
1 2 0.250858 TCCGACAGAGTACCGACCAA 60.251 55.000 0.00 0.00 0.00 3.67
3 4 1.375098 CCTCCGACAGAGTACCGACC 61.375 65.000 0.00 0.00 41.47 4.79
4 5 1.375098 CCCTCCGACAGAGTACCGAC 61.375 65.000 0.00 0.00 41.47 4.79
5 6 1.077930 CCCTCCGACAGAGTACCGA 60.078 63.158 0.00 0.00 41.47 4.69
6 7 2.119655 CCCCTCCGACAGAGTACCG 61.120 68.421 0.00 0.00 41.47 4.02
7 8 0.324091 TTCCCCTCCGACAGAGTACC 60.324 60.000 0.00 0.00 41.47 3.34
8 9 0.816373 GTTCCCCTCCGACAGAGTAC 59.184 60.000 0.00 0.00 41.47 2.73
9 10 0.324091 GGTTCCCCTCCGACAGAGTA 60.324 60.000 0.00 0.00 41.47 2.59
11 12 2.359967 GGGTTCCCCTCCGACAGAG 61.360 68.421 0.00 0.00 41.34 3.35
13 14 1.972660 GATGGGTTCCCCTCCGACAG 61.973 65.000 5.34 0.00 45.70 3.51
14 15 1.993391 GATGGGTTCCCCTCCGACA 60.993 63.158 5.34 0.00 45.70 4.35
15 16 1.993391 TGATGGGTTCCCCTCCGAC 60.993 63.158 5.34 0.00 45.70 4.79
16 17 1.993391 GTGATGGGTTCCCCTCCGA 60.993 63.158 5.34 0.00 45.70 4.55
17 18 2.590092 GTGATGGGTTCCCCTCCG 59.410 66.667 5.34 0.00 45.70 4.63
18 19 1.559065 TTCGTGATGGGTTCCCCTCC 61.559 60.000 5.34 0.00 45.70 4.30
19 20 0.107654 CTTCGTGATGGGTTCCCCTC 60.108 60.000 5.34 5.86 45.70 4.30
20 21 1.562672 CCTTCGTGATGGGTTCCCCT 61.563 60.000 5.34 0.00 45.70 4.79
21 22 1.077716 CCTTCGTGATGGGTTCCCC 60.078 63.158 5.34 0.00 45.71 4.81
22 23 1.749258 GCCTTCGTGATGGGTTCCC 60.749 63.158 0.12 0.12 0.00 3.97
23 24 2.106683 CGCCTTCGTGATGGGTTCC 61.107 63.158 4.20 0.00 0.00 3.62
24 25 0.462047 ATCGCCTTCGTGATGGGTTC 60.462 55.000 4.20 0.00 37.83 3.62
25 26 0.462047 GATCGCCTTCGTGATGGGTT 60.462 55.000 4.20 0.00 39.36 4.11
26 27 1.144057 GATCGCCTTCGTGATGGGT 59.856 57.895 4.20 0.00 39.36 4.51
27 28 0.179073 AAGATCGCCTTCGTGATGGG 60.179 55.000 4.20 0.00 39.36 4.00
28 29 1.212616 GAAGATCGCCTTCGTGATGG 58.787 55.000 2.46 0.00 41.54 3.51
36 37 3.012518 CAAGGTTGATGAAGATCGCCTT 58.987 45.455 0.00 0.00 42.56 4.35
37 38 2.636830 CAAGGTTGATGAAGATCGCCT 58.363 47.619 0.00 0.00 37.88 5.52
38 39 1.064654 GCAAGGTTGATGAAGATCGCC 59.935 52.381 0.00 0.00 0.00 5.54
39 40 2.012673 AGCAAGGTTGATGAAGATCGC 58.987 47.619 0.00 0.00 0.00 4.58
40 41 2.223203 GCAGCAAGGTTGATGAAGATCG 60.223 50.000 12.03 0.00 46.84 3.69
41 42 2.098770 GGCAGCAAGGTTGATGAAGATC 59.901 50.000 12.03 0.00 46.84 2.75
42 43 2.097825 GGCAGCAAGGTTGATGAAGAT 58.902 47.619 12.03 0.00 46.84 2.40
43 44 1.074405 AGGCAGCAAGGTTGATGAAGA 59.926 47.619 12.03 0.00 46.84 2.87
44 45 1.471684 GAGGCAGCAAGGTTGATGAAG 59.528 52.381 12.03 0.00 46.84 3.02
45 46 1.538047 GAGGCAGCAAGGTTGATGAA 58.462 50.000 12.03 0.00 46.84 2.57
46 47 0.322816 GGAGGCAGCAAGGTTGATGA 60.323 55.000 12.03 0.00 46.84 2.92
47 48 0.609957 TGGAGGCAGCAAGGTTGATG 60.610 55.000 3.57 3.57 46.63 3.07
48 49 0.333993 ATGGAGGCAGCAAGGTTGAT 59.666 50.000 0.00 0.00 0.00 2.57
49 50 0.609957 CATGGAGGCAGCAAGGTTGA 60.610 55.000 0.00 0.00 0.00 3.18
50 51 0.609957 TCATGGAGGCAGCAAGGTTG 60.610 55.000 0.00 0.00 0.00 3.77
51 52 0.333993 ATCATGGAGGCAGCAAGGTT 59.666 50.000 0.00 0.00 0.00 3.50
52 53 0.395311 CATCATGGAGGCAGCAAGGT 60.395 55.000 0.00 0.00 0.00 3.50
53 54 0.106868 TCATCATGGAGGCAGCAAGG 60.107 55.000 0.00 0.00 0.00 3.61
54 55 1.022735 GTCATCATGGAGGCAGCAAG 58.977 55.000 0.00 0.00 0.00 4.01
55 56 0.745486 CGTCATCATGGAGGCAGCAA 60.745 55.000 0.00 0.00 0.00 3.91
56 57 1.153309 CGTCATCATGGAGGCAGCA 60.153 57.895 0.00 0.00 0.00 4.41
57 58 1.153289 ACGTCATCATGGAGGCAGC 60.153 57.895 0.00 0.00 0.00 5.25
58 59 0.873312 CGACGTCATCATGGAGGCAG 60.873 60.000 17.16 0.00 0.00 4.85
59 60 1.141665 CGACGTCATCATGGAGGCA 59.858 57.895 17.16 0.00 0.00 4.75
60 61 0.460284 AACGACGTCATCATGGAGGC 60.460 55.000 17.16 0.00 0.00 4.70
61 62 2.010145 AAACGACGTCATCATGGAGG 57.990 50.000 17.16 0.00 0.00 4.30
62 63 2.993220 TGAAAACGACGTCATCATGGAG 59.007 45.455 17.16 0.00 0.00 3.86
63 64 2.734606 GTGAAAACGACGTCATCATGGA 59.265 45.455 17.16 0.00 0.00 3.41
64 65 2.478514 TGTGAAAACGACGTCATCATGG 59.521 45.455 17.16 0.00 0.00 3.66
65 66 3.423515 CCTGTGAAAACGACGTCATCATG 60.424 47.826 17.16 12.35 0.00 3.07
66 67 2.736721 CCTGTGAAAACGACGTCATCAT 59.263 45.455 17.16 0.00 0.00 2.45
67 68 2.131972 CCTGTGAAAACGACGTCATCA 58.868 47.619 17.16 10.88 0.00 3.07
68 69 2.155155 GTCCTGTGAAAACGACGTCATC 59.845 50.000 17.16 8.38 0.00 2.92
69 70 2.132762 GTCCTGTGAAAACGACGTCAT 58.867 47.619 17.16 0.00 0.00 3.06
70 71 1.563111 GTCCTGTGAAAACGACGTCA 58.437 50.000 17.16 0.00 0.00 4.35
71 72 0.857287 GGTCCTGTGAAAACGACGTC 59.143 55.000 5.18 5.18 0.00 4.34
72 73 0.462789 AGGTCCTGTGAAAACGACGT 59.537 50.000 0.00 0.00 0.00 4.34
73 74 2.056577 GTAGGTCCTGTGAAAACGACG 58.943 52.381 0.00 0.00 0.00 5.12
74 75 2.056577 CGTAGGTCCTGTGAAAACGAC 58.943 52.381 0.00 0.00 0.00 4.34
75 76 1.682854 ACGTAGGTCCTGTGAAAACGA 59.317 47.619 14.93 0.00 33.40 3.85
76 77 1.790623 CACGTAGGTCCTGTGAAAACG 59.209 52.381 0.00 4.79 35.66 3.60
77 78 2.798847 GACACGTAGGTCCTGTGAAAAC 59.201 50.000 14.69 0.00 37.08 2.43
78 79 3.102052 GACACGTAGGTCCTGTGAAAA 57.898 47.619 14.69 0.00 37.08 2.29
79 80 2.806608 GACACGTAGGTCCTGTGAAA 57.193 50.000 14.69 0.00 37.08 2.69
87 88 0.460284 CTGCCATGGACACGTAGGTC 60.460 60.000 18.40 0.00 37.06 3.85
88 89 1.192146 ACTGCCATGGACACGTAGGT 61.192 55.000 18.40 4.20 0.00 3.08
89 90 0.821517 TACTGCCATGGACACGTAGG 59.178 55.000 18.40 3.57 0.00 3.18
90 91 1.476891 ACTACTGCCATGGACACGTAG 59.523 52.381 18.40 22.52 0.00 3.51
91 92 1.552578 ACTACTGCCATGGACACGTA 58.447 50.000 18.40 14.47 0.00 3.57
92 93 0.685097 AACTACTGCCATGGACACGT 59.315 50.000 18.40 14.15 0.00 4.49
93 94 2.165641 TCTAACTACTGCCATGGACACG 59.834 50.000 18.40 9.45 0.00 4.49
94 95 3.887621 TCTAACTACTGCCATGGACAC 57.112 47.619 18.40 0.00 0.00 3.67
95 96 3.134623 CCATCTAACTACTGCCATGGACA 59.865 47.826 18.40 12.31 33.86 4.02
96 97 3.733337 CCATCTAACTACTGCCATGGAC 58.267 50.000 18.40 7.64 33.86 4.02
97 98 2.104792 GCCATCTAACTACTGCCATGGA 59.895 50.000 18.40 0.00 33.86 3.41
98 99 2.105477 AGCCATCTAACTACTGCCATGG 59.895 50.000 7.63 7.63 34.94 3.66
99 100 3.482156 AGCCATCTAACTACTGCCATG 57.518 47.619 0.00 0.00 0.00 3.66
100 101 4.510167 AAAGCCATCTAACTACTGCCAT 57.490 40.909 0.00 0.00 0.00 4.40
101 102 4.301072 AAAAGCCATCTAACTACTGCCA 57.699 40.909 0.00 0.00 0.00 4.92
136 137 9.762933 CCCGGATGAAATTATTGTATTGAAAAT 57.237 29.630 0.73 0.00 0.00 1.82
137 138 8.972127 TCCCGGATGAAATTATTGTATTGAAAA 58.028 29.630 0.73 0.00 0.00 2.29
138 139 8.526667 TCCCGGATGAAATTATTGTATTGAAA 57.473 30.769 0.73 0.00 0.00 2.69
139 140 8.704849 ATCCCGGATGAAATTATTGTATTGAA 57.295 30.769 0.73 0.00 0.00 2.69
140 141 8.163408 AGATCCCGGATGAAATTATTGTATTGA 58.837 33.333 4.08 0.00 0.00 2.57
141 142 8.340618 AGATCCCGGATGAAATTATTGTATTG 57.659 34.615 4.08 0.00 0.00 1.90
144 145 9.667107 GAATAGATCCCGGATGAAATTATTGTA 57.333 33.333 4.08 0.00 0.00 2.41
145 146 8.163408 TGAATAGATCCCGGATGAAATTATTGT 58.837 33.333 4.08 0.00 0.00 2.71
146 147 8.565896 TGAATAGATCCCGGATGAAATTATTG 57.434 34.615 4.08 0.00 0.00 1.90
147 148 9.759473 ATTGAATAGATCCCGGATGAAATTATT 57.241 29.630 4.08 1.83 0.00 1.40
148 149 9.182214 CATTGAATAGATCCCGGATGAAATTAT 57.818 33.333 4.08 0.00 0.00 1.28
149 150 8.163408 ACATTGAATAGATCCCGGATGAAATTA 58.837 33.333 4.08 0.00 0.00 1.40
150 151 7.006509 ACATTGAATAGATCCCGGATGAAATT 58.993 34.615 4.08 1.63 0.00 1.82
151 152 6.546484 ACATTGAATAGATCCCGGATGAAAT 58.454 36.000 4.08 0.00 0.00 2.17
152 153 5.940617 ACATTGAATAGATCCCGGATGAAA 58.059 37.500 4.08 0.00 0.00 2.69
153 154 5.567037 ACATTGAATAGATCCCGGATGAA 57.433 39.130 4.08 0.00 0.00 2.57
154 155 6.680148 TTACATTGAATAGATCCCGGATGA 57.320 37.500 4.08 0.00 0.00 2.92
155 156 6.540189 GGATTACATTGAATAGATCCCGGATG 59.460 42.308 4.08 0.00 0.00 3.51
156 157 6.445139 AGGATTACATTGAATAGATCCCGGAT 59.555 38.462 0.73 0.00 34.89 4.18
157 158 5.785423 AGGATTACATTGAATAGATCCCGGA 59.215 40.000 0.73 0.00 34.89 5.14
158 159 6.054860 AGGATTACATTGAATAGATCCCGG 57.945 41.667 0.00 0.00 34.89 5.73
159 160 5.807520 CGAGGATTACATTGAATAGATCCCG 59.192 44.000 8.92 8.69 34.89 5.14
160 161 5.582665 GCGAGGATTACATTGAATAGATCCC 59.417 44.000 8.92 0.00 34.89 3.85
161 162 5.289675 CGCGAGGATTACATTGAATAGATCC 59.710 44.000 0.00 5.84 34.62 3.36
162 163 5.864474 ACGCGAGGATTACATTGAATAGATC 59.136 40.000 15.93 0.00 0.00 2.75
163 164 5.784177 ACGCGAGGATTACATTGAATAGAT 58.216 37.500 15.93 0.00 0.00 1.98
164 165 5.196341 ACGCGAGGATTACATTGAATAGA 57.804 39.130 15.93 0.00 0.00 1.98
165 166 5.234329 ACAACGCGAGGATTACATTGAATAG 59.766 40.000 15.93 0.00 0.00 1.73
166 167 5.006261 CACAACGCGAGGATTACATTGAATA 59.994 40.000 15.93 0.00 0.00 1.75
167 168 3.938963 ACAACGCGAGGATTACATTGAAT 59.061 39.130 15.93 0.00 0.00 2.57
168 169 3.124466 CACAACGCGAGGATTACATTGAA 59.876 43.478 15.93 0.00 0.00 2.69
169 170 2.670905 CACAACGCGAGGATTACATTGA 59.329 45.455 15.93 0.00 0.00 2.57
170 171 2.415168 ACACAACGCGAGGATTACATTG 59.585 45.455 15.93 5.87 0.00 2.82
171 172 2.695359 ACACAACGCGAGGATTACATT 58.305 42.857 15.93 0.00 0.00 2.71
172 173 2.380084 ACACAACGCGAGGATTACAT 57.620 45.000 15.93 0.00 0.00 2.29
173 174 2.157834 AACACAACGCGAGGATTACA 57.842 45.000 15.93 0.00 0.00 2.41
174 175 2.735134 AGAAACACAACGCGAGGATTAC 59.265 45.455 15.93 0.00 0.00 1.89
175 176 3.034721 AGAAACACAACGCGAGGATTA 57.965 42.857 15.93 0.00 0.00 1.75
176 177 1.878953 AGAAACACAACGCGAGGATT 58.121 45.000 15.93 0.00 0.00 3.01
177 178 1.531149 CAAGAAACACAACGCGAGGAT 59.469 47.619 15.93 0.00 0.00 3.24
178 179 0.934496 CAAGAAACACAACGCGAGGA 59.066 50.000 15.93 0.00 0.00 3.71
179 180 0.041312 CCAAGAAACACAACGCGAGG 60.041 55.000 15.93 6.68 0.00 4.63
180 181 0.041312 CCCAAGAAACACAACGCGAG 60.041 55.000 15.93 7.57 0.00 5.03
181 182 0.462225 TCCCAAGAAACACAACGCGA 60.462 50.000 15.93 0.00 0.00 5.87
182 183 0.591170 ATCCCAAGAAACACAACGCG 59.409 50.000 3.53 3.53 0.00 6.01
183 184 1.068541 GGATCCCAAGAAACACAACGC 60.069 52.381 0.00 0.00 0.00 4.84
184 185 1.196808 CGGATCCCAAGAAACACAACG 59.803 52.381 6.06 0.00 0.00 4.10
185 186 2.500229 TCGGATCCCAAGAAACACAAC 58.500 47.619 6.06 0.00 0.00 3.32
186 187 2.940994 TCGGATCCCAAGAAACACAA 57.059 45.000 6.06 0.00 0.00 3.33
187 188 2.304470 TCATCGGATCCCAAGAAACACA 59.696 45.455 6.06 0.00 0.00 3.72
188 189 2.939103 CTCATCGGATCCCAAGAAACAC 59.061 50.000 6.06 0.00 0.00 3.32
189 190 2.571653 ACTCATCGGATCCCAAGAAACA 59.428 45.455 6.06 0.00 0.00 2.83
190 191 3.268023 ACTCATCGGATCCCAAGAAAC 57.732 47.619 6.06 0.00 0.00 2.78
191 192 3.009033 ACAACTCATCGGATCCCAAGAAA 59.991 43.478 6.06 0.00 0.00 2.52
192 193 2.571653 ACAACTCATCGGATCCCAAGAA 59.428 45.455 6.06 0.00 0.00 2.52
193 194 2.093500 CACAACTCATCGGATCCCAAGA 60.093 50.000 6.06 0.00 0.00 3.02
194 195 2.283298 CACAACTCATCGGATCCCAAG 58.717 52.381 6.06 0.99 0.00 3.61
195 196 1.065491 CCACAACTCATCGGATCCCAA 60.065 52.381 6.06 0.00 0.00 4.12
196 197 0.541392 CCACAACTCATCGGATCCCA 59.459 55.000 6.06 0.00 0.00 4.37
197 198 0.179045 CCCACAACTCATCGGATCCC 60.179 60.000 6.06 0.00 0.00 3.85
198 199 0.541863 ACCCACAACTCATCGGATCC 59.458 55.000 0.00 0.00 0.00 3.36
199 200 2.009774 CAACCCACAACTCATCGGATC 58.990 52.381 0.00 0.00 0.00 3.36
200 201 1.351017 ACAACCCACAACTCATCGGAT 59.649 47.619 0.00 0.00 0.00 4.18
201 202 0.762418 ACAACCCACAACTCATCGGA 59.238 50.000 0.00 0.00 0.00 4.55
202 203 0.874390 CACAACCCACAACTCATCGG 59.126 55.000 0.00 0.00 0.00 4.18
203 204 1.877637 TCACAACCCACAACTCATCG 58.122 50.000 0.00 0.00 0.00 3.84
204 205 3.058016 CACATCACAACCCACAACTCATC 60.058 47.826 0.00 0.00 0.00 2.92
205 206 2.886523 CACATCACAACCCACAACTCAT 59.113 45.455 0.00 0.00 0.00 2.90
206 207 2.296792 CACATCACAACCCACAACTCA 58.703 47.619 0.00 0.00 0.00 3.41
207 208 2.297701 ACACATCACAACCCACAACTC 58.702 47.619 0.00 0.00 0.00 3.01
208 209 2.426738 CAACACATCACAACCCACAACT 59.573 45.455 0.00 0.00 0.00 3.16
209 210 2.165437 ACAACACATCACAACCCACAAC 59.835 45.455 0.00 0.00 0.00 3.32
210 211 2.165234 CACAACACATCACAACCCACAA 59.835 45.455 0.00 0.00 0.00 3.33
211 212 1.747924 CACAACACATCACAACCCACA 59.252 47.619 0.00 0.00 0.00 4.17
212 213 1.748493 ACACAACACATCACAACCCAC 59.252 47.619 0.00 0.00 0.00 4.61
213 214 2.136298 ACACAACACATCACAACCCA 57.864 45.000 0.00 0.00 0.00 4.51
214 215 2.425312 TCAACACAACACATCACAACCC 59.575 45.455 0.00 0.00 0.00 4.11
215 216 3.128589 ACTCAACACAACACATCACAACC 59.871 43.478 0.00 0.00 0.00 3.77
216 217 4.355543 ACTCAACACAACACATCACAAC 57.644 40.909 0.00 0.00 0.00 3.32
217 218 4.217334 ACAACTCAACACAACACATCACAA 59.783 37.500 0.00 0.00 0.00 3.33
218 219 3.755905 ACAACTCAACACAACACATCACA 59.244 39.130 0.00 0.00 0.00 3.58
219 220 4.342772 GACAACTCAACACAACACATCAC 58.657 43.478 0.00 0.00 0.00 3.06
220 221 3.063316 CGACAACTCAACACAACACATCA 59.937 43.478 0.00 0.00 0.00 3.07
221 222 3.063452 ACGACAACTCAACACAACACATC 59.937 43.478 0.00 0.00 0.00 3.06
222 223 3.006940 ACGACAACTCAACACAACACAT 58.993 40.909 0.00 0.00 0.00 3.21
223 224 2.158645 CACGACAACTCAACACAACACA 59.841 45.455 0.00 0.00 0.00 3.72
224 225 2.158841 ACACGACAACTCAACACAACAC 59.841 45.455 0.00 0.00 0.00 3.32
225 226 2.158645 CACACGACAACTCAACACAACA 59.841 45.455 0.00 0.00 0.00 3.33
226 227 2.158841 ACACACGACAACTCAACACAAC 59.841 45.455 0.00 0.00 0.00 3.32
227 228 2.158645 CACACACGACAACTCAACACAA 59.841 45.455 0.00 0.00 0.00 3.33
228 229 1.729517 CACACACGACAACTCAACACA 59.270 47.619 0.00 0.00 0.00 3.72
229 230 1.730064 ACACACACGACAACTCAACAC 59.270 47.619 0.00 0.00 0.00 3.32
230 231 2.087501 ACACACACGACAACTCAACA 57.912 45.000 0.00 0.00 0.00 3.33
231 232 2.413796 TCAACACACACGACAACTCAAC 59.586 45.455 0.00 0.00 0.00 3.18
232 233 2.670905 CTCAACACACACGACAACTCAA 59.329 45.455 0.00 0.00 0.00 3.02
233 234 2.267426 CTCAACACACACGACAACTCA 58.733 47.619 0.00 0.00 0.00 3.41
234 235 2.029244 CACTCAACACACACGACAACTC 59.971 50.000 0.00 0.00 0.00 3.01
235 236 1.999735 CACTCAACACACACGACAACT 59.000 47.619 0.00 0.00 0.00 3.16
236 237 1.062002 CCACTCAACACACACGACAAC 59.938 52.381 0.00 0.00 0.00 3.32
237 238 1.364721 CCACTCAACACACACGACAA 58.635 50.000 0.00 0.00 0.00 3.18
238 239 0.461163 CCCACTCAACACACACGACA 60.461 55.000 0.00 0.00 0.00 4.35
239 240 0.461339 ACCCACTCAACACACACGAC 60.461 55.000 0.00 0.00 0.00 4.34
240 241 0.250793 AACCCACTCAACACACACGA 59.749 50.000 0.00 0.00 0.00 4.35
241 242 0.376852 CAACCCACTCAACACACACG 59.623 55.000 0.00 0.00 0.00 4.49
242 243 1.132262 CACAACCCACTCAACACACAC 59.868 52.381 0.00 0.00 0.00 3.82
243 244 1.458398 CACAACCCACTCAACACACA 58.542 50.000 0.00 0.00 0.00 3.72
244 245 0.738389 CCACAACCCACTCAACACAC 59.262 55.000 0.00 0.00 0.00 3.82
245 246 0.395036 CCCACAACCCACTCAACACA 60.395 55.000 0.00 0.00 0.00 3.72
246 247 0.395173 ACCCACAACCCACTCAACAC 60.395 55.000 0.00 0.00 0.00 3.32
247 248 0.106918 GACCCACAACCCACTCAACA 60.107 55.000 0.00 0.00 0.00 3.33
248 249 0.182775 AGACCCACAACCCACTCAAC 59.817 55.000 0.00 0.00 0.00 3.18
249 250 0.923358 AAGACCCACAACCCACTCAA 59.077 50.000 0.00 0.00 0.00 3.02
250 251 0.923358 AAAGACCCACAACCCACTCA 59.077 50.000 0.00 0.00 0.00 3.41
251 252 1.954382 GAAAAGACCCACAACCCACTC 59.046 52.381 0.00 0.00 0.00 3.51
252 253 1.749286 CGAAAAGACCCACAACCCACT 60.749 52.381 0.00 0.00 0.00 4.00
253 254 0.666374 CGAAAAGACCCACAACCCAC 59.334 55.000 0.00 0.00 0.00 4.61
254 255 0.256464 ACGAAAAGACCCACAACCCA 59.744 50.000 0.00 0.00 0.00 4.51
255 256 0.949397 GACGAAAAGACCCACAACCC 59.051 55.000 0.00 0.00 0.00 4.11
256 257 1.670791 TGACGAAAAGACCCACAACC 58.329 50.000 0.00 0.00 0.00 3.77
257 258 3.314080 TCAATGACGAAAAGACCCACAAC 59.686 43.478 0.00 0.00 0.00 3.32
258 259 3.546724 TCAATGACGAAAAGACCCACAA 58.453 40.909 0.00 0.00 0.00 3.33
259 260 3.138304 CTCAATGACGAAAAGACCCACA 58.862 45.455 0.00 0.00 0.00 4.17
260 261 3.139077 ACTCAATGACGAAAAGACCCAC 58.861 45.455 0.00 0.00 0.00 4.61
261 262 3.485463 ACTCAATGACGAAAAGACCCA 57.515 42.857 0.00 0.00 0.00 4.51
262 263 4.142881 GCTAACTCAATGACGAAAAGACCC 60.143 45.833 0.00 0.00 0.00 4.46
263 264 4.451096 TGCTAACTCAATGACGAAAAGACC 59.549 41.667 0.00 0.00 0.00 3.85
264 265 5.374898 GTGCTAACTCAATGACGAAAAGAC 58.625 41.667 0.00 0.00 0.00 3.01
265 266 4.451096 GGTGCTAACTCAATGACGAAAAGA 59.549 41.667 0.00 0.00 0.00 2.52
266 267 4.666655 CGGTGCTAACTCAATGACGAAAAG 60.667 45.833 0.00 0.00 0.00 2.27
267 268 3.185594 CGGTGCTAACTCAATGACGAAAA 59.814 43.478 0.00 0.00 0.00 2.29
268 269 2.734606 CGGTGCTAACTCAATGACGAAA 59.265 45.455 0.00 0.00 0.00 3.46
269 270 2.333926 CGGTGCTAACTCAATGACGAA 58.666 47.619 0.00 0.00 0.00 3.85
270 271 1.403647 CCGGTGCTAACTCAATGACGA 60.404 52.381 0.00 0.00 0.00 4.20
271 272 0.999406 CCGGTGCTAACTCAATGACG 59.001 55.000 0.00 0.00 0.00 4.35
272 273 2.000447 GTCCGGTGCTAACTCAATGAC 59.000 52.381 0.00 0.00 0.00 3.06
273 274 1.899814 AGTCCGGTGCTAACTCAATGA 59.100 47.619 0.00 0.00 0.00 2.57
274 275 2.271800 GAGTCCGGTGCTAACTCAATG 58.728 52.381 13.79 0.00 39.36 2.82
275 276 1.135083 CGAGTCCGGTGCTAACTCAAT 60.135 52.381 17.55 0.00 39.49 2.57
276 277 0.242825 CGAGTCCGGTGCTAACTCAA 59.757 55.000 17.55 0.00 39.49 3.02
277 278 1.880894 CGAGTCCGGTGCTAACTCA 59.119 57.895 17.55 0.00 39.49 3.41
278 279 4.787999 CGAGTCCGGTGCTAACTC 57.212 61.111 9.63 9.63 36.82 3.01
288 289 0.245539 TAGAAACAAGGCCGAGTCCG 59.754 55.000 0.00 0.00 0.00 4.79
289 290 2.467566 TTAGAAACAAGGCCGAGTCC 57.532 50.000 0.00 0.00 0.00 3.85
290 291 4.514066 TCTTTTTAGAAACAAGGCCGAGTC 59.486 41.667 0.00 0.00 0.00 3.36
291 292 4.457466 TCTTTTTAGAAACAAGGCCGAGT 58.543 39.130 0.00 0.00 0.00 4.18
292 293 5.432885 TTCTTTTTAGAAACAAGGCCGAG 57.567 39.130 0.00 0.00 0.00 4.63
293 294 5.838531 TTTCTTTTTAGAAACAAGGCCGA 57.161 34.783 0.00 0.00 33.40 5.54
294 295 7.477144 AAATTTCTTTTTAGAAACAAGGCCG 57.523 32.000 0.00 0.00 40.12 6.13
335 336 1.600957 CTCATTATGCACGGCTTCCAG 59.399 52.381 0.00 0.00 0.00 3.86
369 370 3.244457 ACAGTAAGTAGCCGCCTTCTTTT 60.244 43.478 0.00 0.00 32.02 2.27
379 380 2.858344 CGTGCATGTACAGTAAGTAGCC 59.142 50.000 14.55 0.00 32.19 3.93
407 408 0.804989 GTTGGGTTGAAGGAGCATCG 59.195 55.000 0.00 0.00 34.37 3.84
408 409 1.177401 GGTTGGGTTGAAGGAGCATC 58.823 55.000 0.00 0.00 0.00 3.91
418 419 1.580942 CTGTGATGCGGTTGGGTTG 59.419 57.895 0.00 0.00 0.00 3.77
470 478 1.067060 GTTTTGGTTCAGTCACCCTGC 59.933 52.381 0.00 0.00 41.25 4.85
474 482 4.450082 AAACAGTTTTGGTTCAGTCACC 57.550 40.909 0.00 0.00 37.34 4.02
479 487 7.206687 TGCCTTAATAAACAGTTTTGGTTCAG 58.793 34.615 3.25 0.00 35.41 3.02
484 492 7.518211 GCAAGTTGCCTTAATAAACAGTTTTGG 60.518 37.037 17.36 1.36 37.42 3.28
496 504 3.701040 CCCTATGTGCAAGTTGCCTTAAT 59.299 43.478 24.59 14.37 44.23 1.40
547 561 1.880271 AGCAATCTGATCCTGATGCG 58.120 50.000 5.81 0.00 0.00 4.73
574 588 6.647481 GGGTTTTGCCAGTTCGTTTTAAATAT 59.353 34.615 0.00 0.00 39.65 1.28
575 589 5.984323 GGGTTTTGCCAGTTCGTTTTAAATA 59.016 36.000 0.00 0.00 39.65 1.40
576 590 4.812091 GGGTTTTGCCAGTTCGTTTTAAAT 59.188 37.500 0.00 0.00 39.65 1.40
585 599 2.200337 AGCGGGGTTTTGCCAGTTC 61.200 57.895 0.00 0.00 39.65 3.01
587 601 2.912025 CAGCGGGGTTTTGCCAGT 60.912 61.111 0.00 0.00 39.65 4.00
589 603 3.499461 TAGCAGCGGGGTTTTGCCA 62.499 57.895 0.00 0.00 38.58 4.92
591 605 2.877691 CTAGCAGCGGGGTTTTGC 59.122 61.111 0.00 0.00 38.09 3.68
670 684 1.535462 GGATGTGTGGTCAAACTTCGG 59.465 52.381 2.44 0.00 0.00 4.30
717 738 4.224818 TGGATGGTTACATGTCAGTCATCA 59.775 41.667 21.75 12.15 37.47 3.07
718 739 4.769688 TGGATGGTTACATGTCAGTCATC 58.230 43.478 0.00 11.51 37.47 2.92
719 740 4.842531 TGGATGGTTACATGTCAGTCAT 57.157 40.909 0.00 2.54 37.47 3.06
720 741 4.041567 ACTTGGATGGTTACATGTCAGTCA 59.958 41.667 0.00 0.00 37.47 3.41
721 742 4.393062 CACTTGGATGGTTACATGTCAGTC 59.607 45.833 0.00 0.00 37.47 3.51
722 743 4.326826 CACTTGGATGGTTACATGTCAGT 58.673 43.478 0.00 0.00 37.47 3.41
723 744 3.127548 GCACTTGGATGGTTACATGTCAG 59.872 47.826 0.00 0.00 37.47 3.51
727 748 3.242837 CGATGCACTTGGATGGTTACATG 60.243 47.826 0.00 0.00 37.47 3.21
728 749 2.945008 CGATGCACTTGGATGGTTACAT 59.055 45.455 0.00 0.00 40.85 2.29
729 750 2.290008 ACGATGCACTTGGATGGTTACA 60.290 45.455 0.00 0.00 31.47 2.41
730 751 2.095853 CACGATGCACTTGGATGGTTAC 59.904 50.000 0.00 0.00 33.06 2.50
731 752 2.027653 TCACGATGCACTTGGATGGTTA 60.028 45.455 0.00 0.00 33.06 2.85
733 754 0.324614 TCACGATGCACTTGGATGGT 59.675 50.000 0.00 0.00 35.43 3.55
813 850 4.098501 GCTTATTAGCTGAAAATGTGGGCT 59.901 41.667 0.00 0.00 44.27 5.19
907 1342 3.306502 CGGCCGGTGGAATATGTTATACT 60.307 47.826 20.10 0.00 0.00 2.12
908 1343 2.997986 CGGCCGGTGGAATATGTTATAC 59.002 50.000 20.10 0.00 0.00 1.47
909 1344 2.613474 GCGGCCGGTGGAATATGTTATA 60.613 50.000 29.38 0.00 0.00 0.98
910 1345 1.880646 GCGGCCGGTGGAATATGTTAT 60.881 52.381 29.38 0.00 0.00 1.89
911 1346 0.533308 GCGGCCGGTGGAATATGTTA 60.533 55.000 29.38 0.00 0.00 2.41
912 1347 1.822186 GCGGCCGGTGGAATATGTT 60.822 57.895 29.38 0.00 0.00 2.71
913 1348 2.203153 GCGGCCGGTGGAATATGT 60.203 61.111 29.38 0.00 0.00 2.29
914 1349 2.978010 GGCGGCCGGTGGAATATG 60.978 66.667 29.38 0.00 0.00 1.78
944 1382 1.638467 CTCAAATACGAGCTGCCGC 59.362 57.895 9.82 0.00 0.00 6.53
1300 1746 2.804090 GTTCTGGCCGTCGACGAC 60.804 66.667 37.65 27.72 43.02 4.34
1423 1884 3.362399 ATGTCACGCTCTGGCTCGG 62.362 63.158 0.00 0.00 36.09 4.63
1438 1905 1.134965 GTAGTCGAAGCTCTGCCATGT 60.135 52.381 0.00 0.00 0.00 3.21
1625 2092 0.530744 CCCGGTCGTGAAGATCTTCA 59.469 55.000 30.05 30.05 46.27 3.02
1735 2202 1.069358 GGAGCTGATGTAGTAGGTGCC 59.931 57.143 0.00 0.00 0.00 5.01
1839 2312 1.818959 CGGTCGGGTGGTACCAGAAA 61.819 60.000 16.93 0.00 43.85 2.52
2229 2705 4.201679 TGCACGACCGCCGGATAG 62.202 66.667 11.71 2.52 43.93 2.08
2341 3739 0.249398 AGAAGCACGCCGGAAATAGT 59.751 50.000 5.05 0.00 0.00 2.12
2505 3909 0.886043 TCTTGTTCTCGTCGTCCCGA 60.886 55.000 0.00 0.00 35.22 5.14
2616 4029 0.684479 GGCCAAATCCACCTTCTCCC 60.684 60.000 0.00 0.00 0.00 4.30
2923 4426 0.811281 GGTATCCAGGCTGTTGTTGC 59.189 55.000 14.43 0.00 0.00 4.17
2967 4470 4.389890 TTTCTCTTGTGCAGCAAATTGT 57.610 36.364 0.00 0.00 36.53 2.71
2975 4479 1.397693 CGCGAGTTTTCTCTTGTGCAG 60.398 52.381 0.00 0.00 44.16 4.41
2995 4500 7.012421 GTGTCCATTTGATATAGGAAAGTGGTC 59.988 40.741 0.00 0.00 0.00 4.02
3017 4524 9.979270 CATTCACTGAGATAAATTAACTGTGTC 57.021 33.333 0.00 0.00 34.07 3.67
3306 4821 8.635877 AACAGTATACAACGATTTCAGAGATC 57.364 34.615 5.50 0.00 0.00 2.75
3319 4888 5.282510 CCCATCTCGAGAACAGTATACAAC 58.717 45.833 20.91 0.00 0.00 3.32
3345 4924 4.177026 CCTCACAAGTCAGCATGTAGTAC 58.823 47.826 0.00 0.00 37.40 2.73
3502 5081 1.093496 TTAGATCGAGCTCGGCGTCA 61.093 55.000 33.98 16.48 40.29 4.35
3573 5157 5.357032 ACAATTAATGAAAGATCGACCACCC 59.643 40.000 0.00 0.00 0.00 4.61
3574 5158 6.128007 ACACAATTAATGAAAGATCGACCACC 60.128 38.462 0.00 0.00 0.00 4.61
3702 5297 2.187946 CCTCCGCACCTGGATGTC 59.812 66.667 0.00 0.00 37.41 3.06
3734 5329 2.126463 ACGTCGACGCACATGAGG 60.126 61.111 35.92 8.80 44.43 3.86
3842 5437 0.840722 TCCTGTTCCTCCCCAGGTTC 60.841 60.000 5.66 0.00 46.79 3.62
3950 5551 5.884792 AGCTAAACTACCATAGTGAGTACGT 59.115 40.000 0.00 0.00 39.39 3.57
3952 5553 6.979238 CCAAGCTAAACTACCATAGTGAGTAC 59.021 42.308 0.00 0.00 39.39 2.73
3991 5592 4.385358 AAGCTTTTGTTGTAACCTGTGG 57.615 40.909 0.00 0.00 0.00 4.17
4055 5660 2.240162 CTTCCCCCTAGGCGTGTCAC 62.240 65.000 2.05 0.00 34.51 3.67
4078 5683 7.372451 AGCAAATAAATTAGAACGCACTACA 57.628 32.000 0.00 0.00 0.00 2.74
4098 5703 6.603201 CCTCCTCAAACATAGGATAAAAGCAA 59.397 38.462 0.00 0.00 42.25 3.91
4100 5705 6.357367 TCCTCCTCAAACATAGGATAAAAGC 58.643 40.000 0.00 0.00 42.25 3.51
4101 5706 7.796054 TCTCCTCCTCAAACATAGGATAAAAG 58.204 38.462 0.00 0.00 42.25 2.27
4102 5707 7.749377 TCTCCTCCTCAAACATAGGATAAAA 57.251 36.000 0.00 0.00 42.25 1.52
4103 5708 7.623677 TCTTCTCCTCCTCAAACATAGGATAAA 59.376 37.037 0.00 0.00 42.25 1.40
4104 5709 7.132805 TCTTCTCCTCCTCAAACATAGGATAA 58.867 38.462 0.00 0.00 42.25 1.75
4105 5710 6.683537 TCTTCTCCTCCTCAAACATAGGATA 58.316 40.000 0.00 0.00 42.25 2.59
4106 5711 5.533112 TCTTCTCCTCCTCAAACATAGGAT 58.467 41.667 0.00 0.00 42.25 3.24
4107 5712 4.947883 TCTTCTCCTCCTCAAACATAGGA 58.052 43.478 0.00 0.00 40.92 2.94
4108 5713 5.602145 AGATCTTCTCCTCCTCAAACATAGG 59.398 44.000 0.00 0.00 35.26 2.57
4109 5714 6.323482 TCAGATCTTCTCCTCCTCAAACATAG 59.677 42.308 0.00 0.00 0.00 2.23
4110 5715 6.197903 TCAGATCTTCTCCTCCTCAAACATA 58.802 40.000 0.00 0.00 0.00 2.29
4111 5716 5.028802 TCAGATCTTCTCCTCCTCAAACAT 58.971 41.667 0.00 0.00 0.00 2.71
4112 5717 4.420206 TCAGATCTTCTCCTCCTCAAACA 58.580 43.478 0.00 0.00 0.00 2.83
4113 5718 5.363580 AGATCAGATCTTCTCCTCCTCAAAC 59.636 44.000 7.15 0.00 35.76 2.93
4114 5719 5.363292 CAGATCAGATCTTCTCCTCCTCAAA 59.637 44.000 10.51 0.00 37.58 2.69
4115 5720 4.894705 CAGATCAGATCTTCTCCTCCTCAA 59.105 45.833 10.51 0.00 37.58 3.02
4116 5721 4.167697 TCAGATCAGATCTTCTCCTCCTCA 59.832 45.833 10.51 0.00 37.58 3.86
4117 5722 4.728772 TCAGATCAGATCTTCTCCTCCTC 58.271 47.826 10.51 0.00 37.58 3.71
4118 5723 4.733165 CTCAGATCAGATCTTCTCCTCCT 58.267 47.826 10.51 0.00 37.58 3.69
4119 5724 3.256631 GCTCAGATCAGATCTTCTCCTCC 59.743 52.174 10.51 0.00 37.58 4.30
4120 5725 3.890756 TGCTCAGATCAGATCTTCTCCTC 59.109 47.826 10.51 0.00 37.58 3.71
4121 5726 3.913509 TGCTCAGATCAGATCTTCTCCT 58.086 45.455 10.51 0.00 37.58 3.69
4122 5727 4.669206 TTGCTCAGATCAGATCTTCTCC 57.331 45.455 10.51 0.87 37.58 3.71
4123 5728 4.919168 CGATTGCTCAGATCAGATCTTCTC 59.081 45.833 10.51 3.31 37.58 2.87
4124 5729 4.341806 ACGATTGCTCAGATCAGATCTTCT 59.658 41.667 10.51 0.00 37.58 2.85
4125 5730 4.619973 ACGATTGCTCAGATCAGATCTTC 58.380 43.478 10.51 4.03 37.58 2.87
4126 5731 4.341806 AGACGATTGCTCAGATCAGATCTT 59.658 41.667 10.51 0.00 37.58 2.40
4127 5732 3.890756 AGACGATTGCTCAGATCAGATCT 59.109 43.478 7.15 7.15 41.15 2.75
4128 5733 4.229096 GAGACGATTGCTCAGATCAGATC 58.771 47.826 1.64 1.64 32.67 2.75
4129 5734 3.005684 GGAGACGATTGCTCAGATCAGAT 59.994 47.826 0.00 0.00 34.07 2.90
4130 5735 2.360483 GGAGACGATTGCTCAGATCAGA 59.640 50.000 0.00 0.00 34.07 3.27
4131 5736 2.100418 TGGAGACGATTGCTCAGATCAG 59.900 50.000 0.00 0.00 34.07 2.90
4132 5737 2.102578 TGGAGACGATTGCTCAGATCA 58.897 47.619 0.00 0.00 34.07 2.92
4133 5738 2.879002 TGGAGACGATTGCTCAGATC 57.121 50.000 0.00 0.00 34.07 2.75
4134 5739 2.697229 TCATGGAGACGATTGCTCAGAT 59.303 45.455 0.00 0.00 34.07 2.90
4135 5740 2.100418 CTCATGGAGACGATTGCTCAGA 59.900 50.000 0.00 0.00 34.07 3.27
4136 5741 2.100418 TCTCATGGAGACGATTGCTCAG 59.900 50.000 0.00 0.00 33.35 3.35
4137 5742 2.100418 CTCTCATGGAGACGATTGCTCA 59.900 50.000 5.53 0.00 44.45 4.26
4138 5743 2.100584 ACTCTCATGGAGACGATTGCTC 59.899 50.000 15.51 0.00 44.45 4.26
4139 5744 2.106566 ACTCTCATGGAGACGATTGCT 58.893 47.619 15.51 0.00 44.45 3.91
4140 5745 2.593346 ACTCTCATGGAGACGATTGC 57.407 50.000 15.51 0.00 44.45 3.56
4141 5746 4.336713 TCAGTACTCTCATGGAGACGATTG 59.663 45.833 15.51 8.73 44.45 2.67
4142 5747 4.527944 TCAGTACTCTCATGGAGACGATT 58.472 43.478 15.51 0.00 44.45 3.34
4143 5748 4.157849 TCAGTACTCTCATGGAGACGAT 57.842 45.455 15.51 0.00 44.45 3.73
4144 5749 3.629142 TCAGTACTCTCATGGAGACGA 57.371 47.619 15.51 9.31 44.45 4.20
4145 5750 3.488384 GCTTCAGTACTCTCATGGAGACG 60.488 52.174 15.51 4.90 44.45 4.18
4146 5751 3.699038 AGCTTCAGTACTCTCATGGAGAC 59.301 47.826 15.51 10.15 44.45 3.36
4147 5752 3.698539 CAGCTTCAGTACTCTCATGGAGA 59.301 47.826 15.51 6.48 44.45 3.71
4148 5753 3.446873 ACAGCTTCAGTACTCTCATGGAG 59.553 47.826 9.01 9.01 46.87 3.86
4149 5754 3.435275 ACAGCTTCAGTACTCTCATGGA 58.565 45.455 0.00 0.00 0.00 3.41
4150 5755 3.883830 ACAGCTTCAGTACTCTCATGG 57.116 47.619 0.00 0.00 0.00 3.66
4151 5756 4.095036 TCGTACAGCTTCAGTACTCTCATG 59.905 45.833 10.18 0.00 39.66 3.07
4152 5757 4.262617 TCGTACAGCTTCAGTACTCTCAT 58.737 43.478 10.18 0.00 39.66 2.90
4153 5758 3.671716 TCGTACAGCTTCAGTACTCTCA 58.328 45.455 10.18 0.00 39.66 3.27
4154 5759 3.486209 GCTCGTACAGCTTCAGTACTCTC 60.486 52.174 10.18 0.00 45.83 3.20
4155 5760 2.420722 GCTCGTACAGCTTCAGTACTCT 59.579 50.000 10.18 0.00 45.83 3.24
4156 5761 2.788030 GCTCGTACAGCTTCAGTACTC 58.212 52.381 10.18 0.00 45.83 2.59
4157 5762 2.923605 GCTCGTACAGCTTCAGTACT 57.076 50.000 10.18 0.00 45.83 2.73
4166 5771 7.571428 GGATAAAATATTCCAAGCTCGTACAGC 60.571 40.741 8.67 8.67 39.01 4.40
4167 5772 7.657761 AGGATAAAATATTCCAAGCTCGTACAG 59.342 37.037 0.00 0.00 34.27 2.74
4168 5773 7.506114 AGGATAAAATATTCCAAGCTCGTACA 58.494 34.615 0.00 0.00 34.27 2.90
4169 5774 7.964604 AGGATAAAATATTCCAAGCTCGTAC 57.035 36.000 0.00 0.00 34.27 3.67
4170 5775 9.653287 CATAGGATAAAATATTCCAAGCTCGTA 57.347 33.333 0.00 0.00 34.27 3.43
4171 5776 8.157476 ACATAGGATAAAATATTCCAAGCTCGT 58.843 33.333 0.00 0.00 34.27 4.18
4172 5777 8.553459 ACATAGGATAAAATATTCCAAGCTCG 57.447 34.615 0.00 0.00 34.27 5.03
4177 5782 9.787435 AGCGTAACATAGGATAAAATATTCCAA 57.213 29.630 0.00 0.00 34.27 3.53
4178 5783 9.431887 GAGCGTAACATAGGATAAAATATTCCA 57.568 33.333 0.00 0.00 34.27 3.53
4179 5784 8.880750 GGAGCGTAACATAGGATAAAATATTCC 58.119 37.037 0.00 0.00 0.00 3.01
4180 5785 8.592998 CGGAGCGTAACATAGGATAAAATATTC 58.407 37.037 0.00 0.00 0.00 1.75
4181 5786 7.548075 CCGGAGCGTAACATAGGATAAAATATT 59.452 37.037 0.00 0.00 0.00 1.28
4182 5787 7.039882 CCGGAGCGTAACATAGGATAAAATAT 58.960 38.462 0.00 0.00 0.00 1.28
4183 5788 6.392354 CCGGAGCGTAACATAGGATAAAATA 58.608 40.000 0.00 0.00 0.00 1.40
4184 5789 5.235516 CCGGAGCGTAACATAGGATAAAAT 58.764 41.667 0.00 0.00 0.00 1.82
4185 5790 4.501915 CCCGGAGCGTAACATAGGATAAAA 60.502 45.833 0.73 0.00 0.00 1.52
4186 5791 3.006110 CCCGGAGCGTAACATAGGATAAA 59.994 47.826 0.73 0.00 0.00 1.40
4187 5792 2.559668 CCCGGAGCGTAACATAGGATAA 59.440 50.000 0.73 0.00 0.00 1.75
4188 5793 2.165167 CCCGGAGCGTAACATAGGATA 58.835 52.381 0.73 0.00 0.00 2.59
4189 5794 0.966920 CCCGGAGCGTAACATAGGAT 59.033 55.000 0.73 0.00 0.00 3.24
4190 5795 0.396139 ACCCGGAGCGTAACATAGGA 60.396 55.000 0.73 0.00 0.00 2.94
4191 5796 0.031721 GACCCGGAGCGTAACATAGG 59.968 60.000 0.73 0.00 0.00 2.57
4192 5797 1.030457 AGACCCGGAGCGTAACATAG 58.970 55.000 0.73 0.00 0.00 2.23
4208 5813 6.322712 AGCCACCTATATTGCTAGCTATAGAC 59.677 42.308 23.19 13.84 32.12 2.59
4211 5816 5.958380 ACAGCCACCTATATTGCTAGCTATA 59.042 40.000 18.99 18.99 31.69 1.31
4214 5819 2.975489 ACAGCCACCTATATTGCTAGCT 59.025 45.455 17.23 0.00 31.69 3.32
4215 5820 3.409026 ACAGCCACCTATATTGCTAGC 57.591 47.619 8.10 8.10 31.69 3.42
4233 5838 7.342769 TCTTGTAACTCTGAGTCTGTAAACA 57.657 36.000 11.31 6.41 0.00 2.83
4237 5843 6.127980 CGGATTCTTGTAACTCTGAGTCTGTA 60.128 42.308 11.31 0.00 0.00 2.74
4238 5844 5.336055 CGGATTCTTGTAACTCTGAGTCTGT 60.336 44.000 11.31 0.00 0.00 3.41
4239 5845 5.098893 CGGATTCTTGTAACTCTGAGTCTG 58.901 45.833 11.31 0.00 0.00 3.51
4240 5846 4.158764 CCGGATTCTTGTAACTCTGAGTCT 59.841 45.833 11.31 4.46 0.00 3.24
4241 5847 4.425520 CCGGATTCTTGTAACTCTGAGTC 58.574 47.826 11.31 0.00 0.00 3.36
4243 5849 3.447586 TCCCGGATTCTTGTAACTCTGAG 59.552 47.826 0.73 2.45 0.00 3.35
4245 5851 3.887621 TCCCGGATTCTTGTAACTCTG 57.112 47.619 0.73 0.00 0.00 3.35
4246 5852 3.068307 CGATCCCGGATTCTTGTAACTCT 59.932 47.826 0.73 0.00 0.00 3.24
4248 5854 3.454371 CGATCCCGGATTCTTGTAACT 57.546 47.619 0.73 0.00 0.00 2.24
4261 5867 2.123854 TGGTCTCCTCCGATCCCG 60.124 66.667 0.00 0.00 0.00 5.14
4270 5877 0.338120 CCTTCCCTCTCTGGTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
4271 5878 0.689412 CCCTTCCCTCTCTGGTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
4315 5924 3.041946 AGGGGCATCGAAGAACTAGAAT 58.958 45.455 0.00 0.00 43.58 2.40
4341 5950 1.061546 AAGTAGGGCGAGGGTTTTCA 58.938 50.000 0.00 0.00 0.00 2.69
4351 5960 0.179081 GAGCAGGGTTAAGTAGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
4531 6140 0.605319 AGCTTCGCACCATTTTCCGA 60.605 50.000 0.00 0.00 0.00 4.55
4544 6153 2.279784 GGATCGGCCAGAGCTTCG 60.280 66.667 2.24 0.00 39.73 3.79
4567 6177 3.077556 CCACCCGAGCTAGCCACT 61.078 66.667 12.13 0.00 0.00 4.00
4823 6433 1.745320 CGCTACTTCGGCCCCTACAT 61.745 60.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.