Multiple sequence alignment - TraesCS3D01G316200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G316200 chr3D 100.000 6787 0 0 1 6787 429613123 429606337 0.000000e+00 12534.0
1 TraesCS3D01G316200 chr3D 98.147 2482 35 6 3106 5581 489596091 489593615 0.000000e+00 4318.0
2 TraesCS3D01G316200 chr3D 97.294 924 16 2 5565 6480 489593603 489592681 0.000000e+00 1559.0
3 TraesCS3D01G316200 chr3D 99.167 600 4 1 1 599 429619931 429619332 0.000000e+00 1079.0
4 TraesCS3D01G316200 chr6D 98.641 3386 36 5 3102 6481 148845683 148849064 0.000000e+00 5989.0
5 TraesCS3D01G316200 chr6D 98.257 3384 45 7 3104 6481 385339012 385335637 0.000000e+00 5910.0
6 TraesCS3D01G316200 chr6D 84.407 1738 203 38 4773 6482 446367650 446365953 0.000000e+00 1646.0
7 TraesCS3D01G316200 chr6D 95.207 772 36 1 5710 6481 329369275 329368505 0.000000e+00 1219.0
8 TraesCS3D01G316200 chr6D 98.667 600 7 1 1 599 118245757 118246356 0.000000e+00 1062.0
9 TraesCS3D01G316200 chr6D 83.706 313 45 6 598 907 451958034 451958343 2.390000e-74 291.0
10 TraesCS3D01G316200 chr6D 92.647 68 5 0 6414 6481 463721706 463721639 1.560000e-16 99.0
11 TraesCS3D01G316200 chr6D 100.000 35 0 0 908 942 59623259 59623225 1.580000e-06 65.8
12 TraesCS3D01G316200 chr2D 98.462 3381 39 6 3106 6481 607744490 607747862 0.000000e+00 5943.0
13 TraesCS3D01G316200 chr2D 98.667 600 7 1 1 599 555085676 555085077 0.000000e+00 1062.0
14 TraesCS3D01G316200 chr2D 98.500 600 8 1 1 599 22774121 22774720 0.000000e+00 1057.0
15 TraesCS3D01G316200 chr7D 98.081 3387 34 10 3106 6478 1788899 1785530 0.000000e+00 5866.0
16 TraesCS3D01G316200 chr7D 97.698 3388 47 8 3106 6480 285352895 285356264 0.000000e+00 5795.0
17 TraesCS3D01G316200 chr7D 98.667 600 7 1 1 599 526207814 526208413 0.000000e+00 1062.0
18 TraesCS3D01G316200 chr7D 82.353 306 50 4 604 907 207314397 207314094 5.220000e-66 263.0
19 TraesCS3D01G316200 chr5D 97.462 3388 48 11 3106 6481 468507712 468504351 0.000000e+00 5746.0
20 TraesCS3D01G316200 chr5D 80.556 252 44 4 2648 2898 55638811 55638564 8.990000e-44 189.0
21 TraesCS3D01G316200 chr6A 96.278 3385 102 11 3106 6481 35313270 35316639 0.000000e+00 5531.0
22 TraesCS3D01G316200 chr2A 94.018 2491 126 11 3300 5783 315573446 315570972 0.000000e+00 3753.0
23 TraesCS3D01G316200 chr2A 94.489 1488 57 9 5014 6481 777013845 777012363 0.000000e+00 2270.0
24 TraesCS3D01G316200 chr2A 96.107 1310 38 3 3106 4404 395264477 395265784 0.000000e+00 2124.0
25 TraesCS3D01G316200 chr2A 97.727 44 1 0 898 941 115434513 115434470 7.300000e-10 76.8
26 TraesCS3D01G316200 chr3B 94.150 2154 73 19 993 3108 561545893 561543755 0.000000e+00 3230.0
27 TraesCS3D01G316200 chr3B 93.701 1286 56 4 5218 6481 373192240 373190958 0.000000e+00 1903.0
28 TraesCS3D01G316200 chr3B 96.296 378 12 2 3106 3483 373197330 373196955 2.690000e-173 619.0
29 TraesCS3D01G316200 chr3B 95.911 269 11 0 6483 6751 561543764 561543496 2.910000e-118 436.0
30 TraesCS3D01G316200 chr3A 96.564 1368 37 4 1747 3105 556455102 556456468 0.000000e+00 2257.0
31 TraesCS3D01G316200 chr3A 91.803 793 39 17 960 1748 556454171 556454941 0.000000e+00 1081.0
32 TraesCS3D01G316200 chr3A 93.791 306 19 0 6482 6787 556456461 556456766 1.720000e-125 460.0
33 TraesCS3D01G316200 chr2B 93.561 1289 54 7 5219 6481 705902384 705903669 0.000000e+00 1893.0
34 TraesCS3D01G316200 chr2B 82.895 304 47 5 606 907 789463370 789463070 1.120000e-67 268.0
35 TraesCS3D01G316200 chr2B 97.561 41 1 0 902 942 387076182 387076222 3.400000e-08 71.3
36 TraesCS3D01G316200 chr4B 84.293 1859 204 47 4667 6481 585035558 585037372 0.000000e+00 1735.0
37 TraesCS3D01G316200 chr4B 97.727 44 1 0 898 941 438099456 438099413 7.300000e-10 76.8
38 TraesCS3D01G316200 chr1D 98.667 600 7 1 1 599 181764772 181764173 0.000000e+00 1062.0
39 TraesCS3D01G316200 chr1D 98.667 600 7 1 1 599 491962545 491963144 0.000000e+00 1062.0
40 TraesCS3D01G316200 chr1D 98.662 598 7 1 1 597 93614561 93615158 0.000000e+00 1059.0
41 TraesCS3D01G316200 chr1D 100.000 28 0 0 1670 1697 300722514 300722487 1.200000e-02 52.8
42 TraesCS3D01G316200 chr4D 98.500 600 8 1 1 599 392527541 392526942 0.000000e+00 1057.0
43 TraesCS3D01G316200 chr5B 84.437 302 43 4 608 907 593231338 593231039 1.850000e-75 294.0
44 TraesCS3D01G316200 chr5B 79.615 260 49 4 2648 2907 58428758 58429013 4.180000e-42 183.0
45 TraesCS3D01G316200 chr5B 87.931 58 5 2 886 942 69812666 69812722 4.390000e-07 67.6
46 TraesCS3D01G316200 chr6B 83.706 313 46 5 598 907 671720068 671720378 2.390000e-74 291.0
47 TraesCS3D01G316200 chr1A 78.144 485 79 20 6034 6505 249234558 249234088 4.010000e-72 283.0
48 TraesCS3D01G316200 chr1A 100.000 28 0 0 1670 1697 375116840 375116813 1.200000e-02 52.8
49 TraesCS3D01G316200 chrUn 83.007 306 48 4 604 907 92407079 92406776 2.410000e-69 274.0
50 TraesCS3D01G316200 chrUn 83.007 306 48 4 604 907 380756491 380756794 2.410000e-69 274.0
51 TraesCS3D01G316200 chrUn 100.000 29 0 0 1669 1697 266897010 266897038 3.000000e-03 54.7
52 TraesCS3D01G316200 chrUn 100.000 29 0 0 1669 1697 266905836 266905864 3.000000e-03 54.7
53 TraesCS3D01G316200 chr7B 81.935 310 54 2 598 906 740159608 740159916 1.880000e-65 261.0
54 TraesCS3D01G316200 chr7B 81.210 314 54 5 598 909 137476823 137477133 1.460000e-61 248.0
55 TraesCS3D01G316200 chr7B 91.667 48 3 1 894 941 747737815 747737769 1.580000e-06 65.8
56 TraesCS3D01G316200 chr7B 100.000 28 0 0 1670 1697 729248552 729248579 1.200000e-02 52.8
57 TraesCS3D01G316200 chr7A 97.727 44 1 0 898 941 611771871 611771828 7.300000e-10 76.8
58 TraesCS3D01G316200 chr7A 93.333 45 3 0 904 948 127585808 127585764 4.390000e-07 67.6
59 TraesCS3D01G316200 chr1B 97.727 44 1 0 898 941 93954394 93954351 7.300000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G316200 chr3D 429606337 429613123 6786 True 12534.0 12534 100.000000 1 6787 1 chr3D.!!$R1 6786
1 TraesCS3D01G316200 chr3D 489592681 489596091 3410 True 2938.5 4318 97.720500 3106 6480 2 chr3D.!!$R3 3374
2 TraesCS3D01G316200 chr3D 429619332 429619931 599 True 1079.0 1079 99.167000 1 599 1 chr3D.!!$R2 598
3 TraesCS3D01G316200 chr6D 148845683 148849064 3381 False 5989.0 5989 98.641000 3102 6481 1 chr6D.!!$F2 3379
4 TraesCS3D01G316200 chr6D 385335637 385339012 3375 True 5910.0 5910 98.257000 3104 6481 1 chr6D.!!$R3 3377
5 TraesCS3D01G316200 chr6D 446365953 446367650 1697 True 1646.0 1646 84.407000 4773 6482 1 chr6D.!!$R4 1709
6 TraesCS3D01G316200 chr6D 329368505 329369275 770 True 1219.0 1219 95.207000 5710 6481 1 chr6D.!!$R2 771
7 TraesCS3D01G316200 chr6D 118245757 118246356 599 False 1062.0 1062 98.667000 1 599 1 chr6D.!!$F1 598
8 TraesCS3D01G316200 chr2D 607744490 607747862 3372 False 5943.0 5943 98.462000 3106 6481 1 chr2D.!!$F2 3375
9 TraesCS3D01G316200 chr2D 555085077 555085676 599 True 1062.0 1062 98.667000 1 599 1 chr2D.!!$R1 598
10 TraesCS3D01G316200 chr2D 22774121 22774720 599 False 1057.0 1057 98.500000 1 599 1 chr2D.!!$F1 598
11 TraesCS3D01G316200 chr7D 1785530 1788899 3369 True 5866.0 5866 98.081000 3106 6478 1 chr7D.!!$R1 3372
12 TraesCS3D01G316200 chr7D 285352895 285356264 3369 False 5795.0 5795 97.698000 3106 6480 1 chr7D.!!$F1 3374
13 TraesCS3D01G316200 chr7D 526207814 526208413 599 False 1062.0 1062 98.667000 1 599 1 chr7D.!!$F2 598
14 TraesCS3D01G316200 chr5D 468504351 468507712 3361 True 5746.0 5746 97.462000 3106 6481 1 chr5D.!!$R2 3375
15 TraesCS3D01G316200 chr6A 35313270 35316639 3369 False 5531.0 5531 96.278000 3106 6481 1 chr6A.!!$F1 3375
16 TraesCS3D01G316200 chr2A 315570972 315573446 2474 True 3753.0 3753 94.018000 3300 5783 1 chr2A.!!$R2 2483
17 TraesCS3D01G316200 chr2A 777012363 777013845 1482 True 2270.0 2270 94.489000 5014 6481 1 chr2A.!!$R3 1467
18 TraesCS3D01G316200 chr2A 395264477 395265784 1307 False 2124.0 2124 96.107000 3106 4404 1 chr2A.!!$F1 1298
19 TraesCS3D01G316200 chr3B 373190958 373192240 1282 True 1903.0 1903 93.701000 5218 6481 1 chr3B.!!$R1 1263
20 TraesCS3D01G316200 chr3B 561543496 561545893 2397 True 1833.0 3230 95.030500 993 6751 2 chr3B.!!$R3 5758
21 TraesCS3D01G316200 chr3A 556454171 556456766 2595 False 1266.0 2257 94.052667 960 6787 3 chr3A.!!$F1 5827
22 TraesCS3D01G316200 chr2B 705902384 705903669 1285 False 1893.0 1893 93.561000 5219 6481 1 chr2B.!!$F2 1262
23 TraesCS3D01G316200 chr4B 585035558 585037372 1814 False 1735.0 1735 84.293000 4667 6481 1 chr4B.!!$F1 1814
24 TraesCS3D01G316200 chr1D 181764173 181764772 599 True 1062.0 1062 98.667000 1 599 1 chr1D.!!$R1 598
25 TraesCS3D01G316200 chr1D 491962545 491963144 599 False 1062.0 1062 98.667000 1 599 1 chr1D.!!$F2 598
26 TraesCS3D01G316200 chr1D 93614561 93615158 597 False 1059.0 1059 98.662000 1 597 1 chr1D.!!$F1 596
27 TraesCS3D01G316200 chr4D 392526942 392527541 599 True 1057.0 1057 98.500000 1 599 1 chr4D.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 953 0.037734 AGCGTTTTTGGGAGTAGGGG 59.962 55.000 0.00 0.0 0.00 4.79 F
958 960 0.195096 TTGGGAGTAGGGGTGTTCCT 59.805 55.000 0.00 0.0 40.79 3.36 F
2310 2514 0.598065 GTGGCCGCATTTCTGAAGTT 59.402 50.000 12.58 0.0 0.00 2.66 F
3026 3231 4.099419 TCAGTGCATTCCATGTCGTAGTAT 59.901 41.667 0.00 0.0 0.00 2.12 F
3754 3983 3.044894 CCCTCCTCTTCTTAGATGCCTT 58.955 50.000 0.00 0.0 0.00 4.35 F
4748 4992 8.490311 TGGAGGAAACCAAAAGAACATATTTTT 58.510 29.630 0.00 0.0 36.96 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2470 1.456705 GTCCCAGGCTCTCGGAGAT 60.457 63.158 8.39 0.00 33.89 2.75 R
2626 2830 2.777114 ACCCACATACATAGGACATGCA 59.223 45.455 0.00 0.00 0.00 3.96 R
3754 3983 2.909006 AGGTGCAGGAAATCTCTTGAGA 59.091 45.455 2.59 2.59 30.22 3.27 R
4916 5174 1.546029 TGTGAGTGTGGCTGCTAGTAG 59.454 52.381 3.05 3.05 0.00 2.57 R
5664 6063 7.485913 CCATAATCGAGTCAACAAAAGAAATGG 59.514 37.037 0.00 0.00 0.00 3.16 R
6025 6449 0.033109 TCTCCATCCCTCTGCTCGAA 60.033 55.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 503 4.081807 GGTTACTAGTCAACGGGTCTGAAT 60.082 45.833 0.00 0.00 0.00 2.57
599 601 9.145865 GCTATTCCAAATAACTGCTCTACTATC 57.854 37.037 0.00 0.00 0.00 2.08
600 602 9.646427 CTATTCCAAATAACTGCTCTACTATCC 57.354 37.037 0.00 0.00 0.00 2.59
601 603 7.676683 TTCCAAATAACTGCTCTACTATCCT 57.323 36.000 0.00 0.00 0.00 3.24
602 604 7.676683 TCCAAATAACTGCTCTACTATCCTT 57.323 36.000 0.00 0.00 0.00 3.36
603 605 7.500992 TCCAAATAACTGCTCTACTATCCTTG 58.499 38.462 0.00 0.00 0.00 3.61
604 606 6.708054 CCAAATAACTGCTCTACTATCCTTGG 59.292 42.308 0.00 0.00 0.00 3.61
605 607 3.828875 AACTGCTCTACTATCCTTGGC 57.171 47.619 0.00 0.00 0.00 4.52
606 608 2.043227 ACTGCTCTACTATCCTTGGCC 58.957 52.381 0.00 0.00 0.00 5.36
607 609 1.346068 CTGCTCTACTATCCTTGGCCC 59.654 57.143 0.00 0.00 0.00 5.80
608 610 1.343985 TGCTCTACTATCCTTGGCCCA 60.344 52.381 0.00 0.00 0.00 5.36
609 611 1.768870 GCTCTACTATCCTTGGCCCAA 59.231 52.381 0.00 0.00 0.00 4.12
610 612 2.172717 GCTCTACTATCCTTGGCCCAAA 59.827 50.000 0.00 0.00 0.00 3.28
611 613 3.181439 GCTCTACTATCCTTGGCCCAAAT 60.181 47.826 0.00 0.00 0.00 2.32
612 614 4.041691 GCTCTACTATCCTTGGCCCAAATA 59.958 45.833 0.00 0.00 0.00 1.40
613 615 5.552178 CTCTACTATCCTTGGCCCAAATAC 58.448 45.833 0.00 0.00 0.00 1.89
614 616 3.208747 ACTATCCTTGGCCCAAATACG 57.791 47.619 0.00 0.00 0.00 3.06
615 617 2.508300 ACTATCCTTGGCCCAAATACGT 59.492 45.455 0.00 0.00 0.00 3.57
616 618 2.525105 ATCCTTGGCCCAAATACGTT 57.475 45.000 0.00 0.00 0.00 3.99
617 619 1.828979 TCCTTGGCCCAAATACGTTC 58.171 50.000 0.00 0.00 0.00 3.95
618 620 1.074084 TCCTTGGCCCAAATACGTTCA 59.926 47.619 0.00 0.00 0.00 3.18
619 621 2.099405 CCTTGGCCCAAATACGTTCAT 58.901 47.619 0.00 0.00 0.00 2.57
620 622 2.099098 CCTTGGCCCAAATACGTTCATC 59.901 50.000 0.00 0.00 0.00 2.92
621 623 1.374560 TGGCCCAAATACGTTCATCG 58.625 50.000 0.00 0.00 46.00 3.84
622 624 1.066071 TGGCCCAAATACGTTCATCGA 60.066 47.619 0.00 0.00 42.86 3.59
623 625 2.218603 GGCCCAAATACGTTCATCGAT 58.781 47.619 0.00 0.00 42.86 3.59
624 626 2.223377 GGCCCAAATACGTTCATCGATC 59.777 50.000 0.00 0.00 42.86 3.69
625 627 2.869801 GCCCAAATACGTTCATCGATCA 59.130 45.455 0.00 0.00 42.86 2.92
626 628 3.311322 GCCCAAATACGTTCATCGATCAA 59.689 43.478 0.00 0.00 42.86 2.57
627 629 4.552767 GCCCAAATACGTTCATCGATCAAG 60.553 45.833 0.00 0.00 42.86 3.02
628 630 4.808895 CCCAAATACGTTCATCGATCAAGA 59.191 41.667 0.00 0.00 42.86 3.02
629 631 5.276868 CCCAAATACGTTCATCGATCAAGAC 60.277 44.000 0.00 0.00 42.86 3.01
630 632 5.520288 CCAAATACGTTCATCGATCAAGACT 59.480 40.000 0.00 0.00 42.86 3.24
631 633 6.036083 CCAAATACGTTCATCGATCAAGACTT 59.964 38.462 0.00 0.00 42.86 3.01
632 634 6.814076 AATACGTTCATCGATCAAGACTTC 57.186 37.500 0.00 0.00 42.86 3.01
633 635 3.512680 ACGTTCATCGATCAAGACTTCC 58.487 45.455 0.00 0.00 42.86 3.46
634 636 2.860735 CGTTCATCGATCAAGACTTCCC 59.139 50.000 0.00 0.00 42.86 3.97
635 637 3.429547 CGTTCATCGATCAAGACTTCCCT 60.430 47.826 0.00 0.00 42.86 4.20
636 638 4.202020 CGTTCATCGATCAAGACTTCCCTA 60.202 45.833 0.00 0.00 42.86 3.53
637 639 5.508153 CGTTCATCGATCAAGACTTCCCTAT 60.508 44.000 0.00 0.00 42.86 2.57
638 640 5.713792 TCATCGATCAAGACTTCCCTATC 57.286 43.478 0.00 0.00 0.00 2.08
639 641 5.389520 TCATCGATCAAGACTTCCCTATCT 58.610 41.667 0.00 0.00 0.00 1.98
640 642 5.835819 TCATCGATCAAGACTTCCCTATCTT 59.164 40.000 0.00 0.00 35.51 2.40
641 643 6.325028 TCATCGATCAAGACTTCCCTATCTTT 59.675 38.462 0.00 0.00 32.77 2.52
642 644 6.150396 TCGATCAAGACTTCCCTATCTTTC 57.850 41.667 0.00 0.00 32.77 2.62
643 645 5.894393 TCGATCAAGACTTCCCTATCTTTCT 59.106 40.000 0.00 0.00 32.77 2.52
644 646 7.061054 TCGATCAAGACTTCCCTATCTTTCTA 58.939 38.462 0.00 0.00 32.77 2.10
645 647 7.229707 TCGATCAAGACTTCCCTATCTTTCTAG 59.770 40.741 0.00 0.00 32.77 2.43
646 648 7.229707 CGATCAAGACTTCCCTATCTTTCTAGA 59.770 40.741 0.00 0.00 32.77 2.43
647 649 9.088987 GATCAAGACTTCCCTATCTTTCTAGAT 57.911 37.037 0.00 0.00 43.51 1.98
648 650 8.243961 TCAAGACTTCCCTATCTTTCTAGATG 57.756 38.462 0.00 0.00 41.25 2.90
649 651 7.288852 TCAAGACTTCCCTATCTTTCTAGATGG 59.711 40.741 0.00 0.00 41.25 3.51
656 658 5.054390 CTATCTTTCTAGATGGGCGACTC 57.946 47.826 0.00 0.00 41.25 3.36
657 659 2.735151 TCTTTCTAGATGGGCGACTCA 58.265 47.619 0.00 0.00 0.00 3.41
658 660 3.096852 TCTTTCTAGATGGGCGACTCAA 58.903 45.455 0.00 0.00 0.00 3.02
659 661 3.131223 TCTTTCTAGATGGGCGACTCAAG 59.869 47.826 0.00 0.00 0.00 3.02
660 662 1.403814 TCTAGATGGGCGACTCAAGG 58.596 55.000 0.00 0.00 0.00 3.61
661 663 0.249657 CTAGATGGGCGACTCAAGGC 60.250 60.000 0.00 0.00 0.00 4.35
662 664 2.016393 TAGATGGGCGACTCAAGGCG 62.016 60.000 0.00 0.00 34.74 5.52
663 665 3.665675 GATGGGCGACTCAAGGCGT 62.666 63.158 7.17 0.00 34.74 5.68
664 666 3.254024 ATGGGCGACTCAAGGCGTT 62.254 57.895 7.17 0.00 34.74 4.84
665 667 2.668550 GGGCGACTCAAGGCGTTT 60.669 61.111 7.17 0.00 34.74 3.60
666 668 2.258726 GGGCGACTCAAGGCGTTTT 61.259 57.895 7.17 0.00 34.74 2.43
667 669 1.206831 GGCGACTCAAGGCGTTTTC 59.793 57.895 7.17 0.00 0.00 2.29
668 670 1.503818 GGCGACTCAAGGCGTTTTCA 61.504 55.000 7.17 0.00 0.00 2.69
669 671 0.306533 GCGACTCAAGGCGTTTTCAA 59.693 50.000 7.17 0.00 0.00 2.69
670 672 1.268335 GCGACTCAAGGCGTTTTCAAA 60.268 47.619 7.17 0.00 0.00 2.69
671 673 2.793237 GCGACTCAAGGCGTTTTCAAAA 60.793 45.455 7.17 0.00 0.00 2.44
672 674 3.430931 CGACTCAAGGCGTTTTCAAAAA 58.569 40.909 0.00 0.00 0.00 1.94
673 675 3.239712 CGACTCAAGGCGTTTTCAAAAAC 59.760 43.478 8.05 8.05 43.61 2.43
674 676 4.421058 GACTCAAGGCGTTTTCAAAAACT 58.579 39.130 14.48 0.00 44.58 2.66
675 677 5.570234 ACTCAAGGCGTTTTCAAAAACTA 57.430 34.783 14.48 0.00 44.58 2.24
676 678 6.144078 ACTCAAGGCGTTTTCAAAAACTAT 57.856 33.333 14.48 0.59 44.58 2.12
677 679 6.569780 ACTCAAGGCGTTTTCAAAAACTATT 58.430 32.000 14.48 5.63 44.58 1.73
678 680 7.708998 ACTCAAGGCGTTTTCAAAAACTATTA 58.291 30.769 14.48 0.00 44.58 0.98
679 681 8.357402 ACTCAAGGCGTTTTCAAAAACTATTAT 58.643 29.630 14.48 0.00 44.58 1.28
680 682 9.191995 CTCAAGGCGTTTTCAAAAACTATTATT 57.808 29.630 14.48 2.63 44.58 1.40
681 683 8.973378 TCAAGGCGTTTTCAAAAACTATTATTG 58.027 29.630 14.48 11.67 44.58 1.90
682 684 7.883229 AGGCGTTTTCAAAAACTATTATTGG 57.117 32.000 14.48 0.75 44.58 3.16
683 685 7.438564 AGGCGTTTTCAAAAACTATTATTGGT 58.561 30.769 14.48 0.00 44.58 3.67
684 686 8.578151 AGGCGTTTTCAAAAACTATTATTGGTA 58.422 29.630 14.48 0.00 44.58 3.25
685 687 9.194271 GGCGTTTTCAAAAACTATTATTGGTAA 57.806 29.630 14.48 0.00 44.58 2.85
697 699 9.906660 AACTATTATTGGTAATGTTTGTGTGTG 57.093 29.630 0.00 0.00 32.84 3.82
698 700 9.073475 ACTATTATTGGTAATGTTTGTGTGTGT 57.927 29.630 0.00 0.00 32.84 3.72
699 701 9.340695 CTATTATTGGTAATGTTTGTGTGTGTG 57.659 33.333 0.00 0.00 32.84 3.82
700 702 4.377839 TTGGTAATGTTTGTGTGTGTGG 57.622 40.909 0.00 0.00 0.00 4.17
701 703 3.621558 TGGTAATGTTTGTGTGTGTGGA 58.378 40.909 0.00 0.00 0.00 4.02
702 704 4.017126 TGGTAATGTTTGTGTGTGTGGAA 58.983 39.130 0.00 0.00 0.00 3.53
703 705 4.462834 TGGTAATGTTTGTGTGTGTGGAAA 59.537 37.500 0.00 0.00 0.00 3.13
704 706 5.040635 GGTAATGTTTGTGTGTGTGGAAAG 58.959 41.667 0.00 0.00 0.00 2.62
705 707 3.799281 ATGTTTGTGTGTGTGGAAAGG 57.201 42.857 0.00 0.00 0.00 3.11
706 708 2.520069 TGTTTGTGTGTGTGGAAAGGT 58.480 42.857 0.00 0.00 0.00 3.50
707 709 2.230025 TGTTTGTGTGTGTGGAAAGGTG 59.770 45.455 0.00 0.00 0.00 4.00
708 710 2.490115 GTTTGTGTGTGTGGAAAGGTGA 59.510 45.455 0.00 0.00 0.00 4.02
709 711 1.745232 TGTGTGTGTGGAAAGGTGAC 58.255 50.000 0.00 0.00 0.00 3.67
710 712 1.003696 TGTGTGTGTGGAAAGGTGACA 59.996 47.619 0.00 0.00 0.00 3.58
711 713 2.088423 GTGTGTGTGGAAAGGTGACAA 58.912 47.619 0.00 0.00 0.00 3.18
712 714 2.088423 TGTGTGTGGAAAGGTGACAAC 58.912 47.619 0.00 0.00 0.00 3.32
713 715 2.088423 GTGTGTGGAAAGGTGACAACA 58.912 47.619 0.00 0.00 0.00 3.33
714 716 2.687935 GTGTGTGGAAAGGTGACAACAT 59.312 45.455 0.00 0.00 0.00 2.71
715 717 2.948979 TGTGTGGAAAGGTGACAACATC 59.051 45.455 0.00 0.00 0.00 3.06
716 718 2.032030 GTGTGGAAAGGTGACAACATCG 60.032 50.000 0.00 0.00 31.58 3.84
717 719 2.218603 GTGGAAAGGTGACAACATCGT 58.781 47.619 0.00 0.00 31.58 3.73
718 720 2.616842 GTGGAAAGGTGACAACATCGTT 59.383 45.455 0.00 0.00 32.11 3.85
719 721 2.616376 TGGAAAGGTGACAACATCGTTG 59.384 45.455 5.34 5.34 29.84 4.10
720 722 2.604614 GGAAAGGTGACAACATCGTTGC 60.605 50.000 6.77 1.43 31.69 4.17
721 723 1.967319 AAGGTGACAACATCGTTGCT 58.033 45.000 6.77 0.00 31.58 3.91
722 724 1.512926 AGGTGACAACATCGTTGCTC 58.487 50.000 6.77 5.04 31.58 4.26
723 725 1.070758 AGGTGACAACATCGTTGCTCT 59.929 47.619 6.77 0.00 31.58 4.09
724 726 2.299013 AGGTGACAACATCGTTGCTCTA 59.701 45.455 6.77 0.00 31.58 2.43
725 727 2.668457 GGTGACAACATCGTTGCTCTAG 59.332 50.000 6.77 0.00 0.00 2.43
726 728 3.318017 GTGACAACATCGTTGCTCTAGT 58.682 45.455 6.77 0.00 0.00 2.57
727 729 3.365220 GTGACAACATCGTTGCTCTAGTC 59.635 47.826 6.77 0.00 0.00 2.59
728 730 2.924290 GACAACATCGTTGCTCTAGTCC 59.076 50.000 6.77 0.00 0.00 3.85
729 731 2.299013 ACAACATCGTTGCTCTAGTCCA 59.701 45.455 6.77 0.00 0.00 4.02
730 732 3.244078 ACAACATCGTTGCTCTAGTCCAA 60.244 43.478 6.77 0.00 0.00 3.53
731 733 3.895232 ACATCGTTGCTCTAGTCCAAT 57.105 42.857 0.00 0.00 0.00 3.16
732 734 4.207891 ACATCGTTGCTCTAGTCCAATT 57.792 40.909 0.00 0.00 0.00 2.32
733 735 3.935203 ACATCGTTGCTCTAGTCCAATTG 59.065 43.478 0.00 0.00 0.00 2.32
734 736 2.346803 TCGTTGCTCTAGTCCAATTGC 58.653 47.619 0.00 0.00 0.00 3.56
735 737 2.076100 CGTTGCTCTAGTCCAATTGCA 58.924 47.619 0.00 0.00 0.00 4.08
736 738 2.094894 CGTTGCTCTAGTCCAATTGCAG 59.905 50.000 0.00 0.00 0.00 4.41
737 739 1.742761 TGCTCTAGTCCAATTGCAGC 58.257 50.000 0.00 0.95 0.00 5.25
738 740 1.280133 TGCTCTAGTCCAATTGCAGCT 59.720 47.619 0.00 0.12 0.00 4.24
739 741 2.290514 TGCTCTAGTCCAATTGCAGCTT 60.291 45.455 0.00 0.00 0.00 3.74
740 742 2.354199 GCTCTAGTCCAATTGCAGCTTC 59.646 50.000 0.00 0.00 0.00 3.86
741 743 2.941720 CTCTAGTCCAATTGCAGCTTCC 59.058 50.000 0.00 0.00 0.00 3.46
742 744 2.573462 TCTAGTCCAATTGCAGCTTCCT 59.427 45.455 0.00 0.00 0.00 3.36
743 745 2.299326 AGTCCAATTGCAGCTTCCTT 57.701 45.000 0.00 0.00 0.00 3.36
744 746 3.439857 AGTCCAATTGCAGCTTCCTTA 57.560 42.857 0.00 0.00 0.00 2.69
745 747 3.973425 AGTCCAATTGCAGCTTCCTTAT 58.027 40.909 0.00 0.00 0.00 1.73
746 748 4.347607 AGTCCAATTGCAGCTTCCTTATT 58.652 39.130 0.00 0.00 0.00 1.40
747 749 4.159135 AGTCCAATTGCAGCTTCCTTATTG 59.841 41.667 0.00 0.00 0.00 1.90
748 750 4.158394 GTCCAATTGCAGCTTCCTTATTGA 59.842 41.667 0.00 0.00 0.00 2.57
749 751 4.771577 TCCAATTGCAGCTTCCTTATTGAA 59.228 37.500 0.00 0.00 0.00 2.69
750 752 5.105635 TCCAATTGCAGCTTCCTTATTGAAG 60.106 40.000 0.00 0.00 43.71 3.02
751 753 5.337009 CCAATTGCAGCTTCCTTATTGAAGT 60.337 40.000 0.00 0.00 42.98 3.01
752 754 5.573337 ATTGCAGCTTCCTTATTGAAGTC 57.427 39.130 0.00 0.00 42.98 3.01
753 755 4.292186 TGCAGCTTCCTTATTGAAGTCT 57.708 40.909 0.00 0.00 42.98 3.24
754 756 4.655963 TGCAGCTTCCTTATTGAAGTCTT 58.344 39.130 0.00 0.00 42.98 3.01
755 757 5.072741 TGCAGCTTCCTTATTGAAGTCTTT 58.927 37.500 0.00 0.00 42.98 2.52
756 758 5.048504 TGCAGCTTCCTTATTGAAGTCTTTG 60.049 40.000 0.00 0.00 42.98 2.77
757 759 5.620879 GCAGCTTCCTTATTGAAGTCTTTGG 60.621 44.000 3.07 0.00 42.98 3.28
758 760 5.707298 CAGCTTCCTTATTGAAGTCTTTGGA 59.293 40.000 3.07 0.00 42.98 3.53
759 761 5.942826 AGCTTCCTTATTGAAGTCTTTGGAG 59.057 40.000 3.07 0.00 42.98 3.86
760 762 5.707764 GCTTCCTTATTGAAGTCTTTGGAGT 59.292 40.000 3.07 0.00 42.98 3.85
761 763 6.879458 GCTTCCTTATTGAAGTCTTTGGAGTA 59.121 38.462 3.07 0.00 42.98 2.59
762 764 7.554476 GCTTCCTTATTGAAGTCTTTGGAGTAT 59.446 37.037 3.07 0.00 42.98 2.12
763 765 9.454859 CTTCCTTATTGAAGTCTTTGGAGTATT 57.545 33.333 0.00 0.00 37.54 1.89
764 766 9.807921 TTCCTTATTGAAGTCTTTGGAGTATTT 57.192 29.630 0.00 0.00 0.00 1.40
765 767 9.449719 TCCTTATTGAAGTCTTTGGAGTATTTC 57.550 33.333 0.00 0.00 0.00 2.17
766 768 9.454859 CCTTATTGAAGTCTTTGGAGTATTTCT 57.545 33.333 0.00 0.00 0.00 2.52
771 773 9.712305 TTGAAGTCTTTGGAGTATTTCTTCTAG 57.288 33.333 0.00 0.00 33.57 2.43
772 774 7.819900 TGAAGTCTTTGGAGTATTTCTTCTAGC 59.180 37.037 0.00 0.00 33.57 3.42
773 775 7.246171 AGTCTTTGGAGTATTTCTTCTAGCA 57.754 36.000 0.00 0.00 0.00 3.49
774 776 7.680730 AGTCTTTGGAGTATTTCTTCTAGCAA 58.319 34.615 0.00 0.00 0.00 3.91
775 777 8.157476 AGTCTTTGGAGTATTTCTTCTAGCAAA 58.843 33.333 0.00 0.00 0.00 3.68
776 778 8.231161 GTCTTTGGAGTATTTCTTCTAGCAAAC 58.769 37.037 0.00 0.00 0.00 2.93
777 779 7.936847 TCTTTGGAGTATTTCTTCTAGCAAACA 59.063 33.333 0.00 0.00 0.00 2.83
778 780 8.635765 TTTGGAGTATTTCTTCTAGCAAACAT 57.364 30.769 0.00 0.00 0.00 2.71
779 781 8.635765 TTGGAGTATTTCTTCTAGCAAACATT 57.364 30.769 0.00 0.00 0.00 2.71
780 782 8.044060 TGGAGTATTTCTTCTAGCAAACATTG 57.956 34.615 0.00 0.00 0.00 2.82
781 783 7.882791 TGGAGTATTTCTTCTAGCAAACATTGA 59.117 33.333 0.00 0.00 0.00 2.57
782 784 8.897752 GGAGTATTTCTTCTAGCAAACATTGAT 58.102 33.333 0.00 0.00 0.00 2.57
785 787 9.937175 GTATTTCTTCTAGCAAACATTGATACC 57.063 33.333 0.00 0.00 0.00 2.73
786 788 7.994425 TTTCTTCTAGCAAACATTGATACCA 57.006 32.000 0.00 0.00 0.00 3.25
787 789 8.579850 TTTCTTCTAGCAAACATTGATACCAT 57.420 30.769 0.00 0.00 0.00 3.55
788 790 7.558161 TCTTCTAGCAAACATTGATACCATG 57.442 36.000 0.00 0.00 0.00 3.66
789 791 7.337938 TCTTCTAGCAAACATTGATACCATGA 58.662 34.615 0.00 0.00 0.00 3.07
790 792 7.828717 TCTTCTAGCAAACATTGATACCATGAA 59.171 33.333 0.00 0.00 0.00 2.57
791 793 8.523915 TTCTAGCAAACATTGATACCATGAAT 57.476 30.769 0.00 0.00 0.00 2.57
792 794 9.625747 TTCTAGCAAACATTGATACCATGAATA 57.374 29.630 0.00 0.00 0.00 1.75
793 795 9.625747 TCTAGCAAACATTGATACCATGAATAA 57.374 29.630 0.00 0.00 0.00 1.40
794 796 9.888878 CTAGCAAACATTGATACCATGAATAAG 57.111 33.333 0.00 0.00 0.00 1.73
795 797 7.719483 AGCAAACATTGATACCATGAATAAGG 58.281 34.615 0.00 0.00 0.00 2.69
796 798 7.342799 AGCAAACATTGATACCATGAATAAGGT 59.657 33.333 0.00 0.00 41.89 3.50
797 799 7.436080 GCAAACATTGATACCATGAATAAGGTG 59.564 37.037 0.00 0.00 38.87 4.00
798 800 8.469200 CAAACATTGATACCATGAATAAGGTGT 58.531 33.333 0.00 0.00 38.87 4.16
799 801 8.593945 AACATTGATACCATGAATAAGGTGTT 57.406 30.769 0.00 0.00 38.87 3.32
800 802 8.593945 ACATTGATACCATGAATAAGGTGTTT 57.406 30.769 0.00 0.00 38.87 2.83
801 803 9.034800 ACATTGATACCATGAATAAGGTGTTTT 57.965 29.630 0.00 0.00 38.87 2.43
802 804 9.520204 CATTGATACCATGAATAAGGTGTTTTC 57.480 33.333 0.00 0.00 38.87 2.29
803 805 8.642935 TTGATACCATGAATAAGGTGTTTTCA 57.357 30.769 0.00 0.00 38.87 2.69
804 806 8.642935 TGATACCATGAATAAGGTGTTTTCAA 57.357 30.769 0.00 0.00 38.87 2.69
805 807 8.739039 TGATACCATGAATAAGGTGTTTTCAAG 58.261 33.333 0.00 0.00 38.87 3.02
806 808 8.877864 ATACCATGAATAAGGTGTTTTCAAGA 57.122 30.769 0.00 0.00 38.87 3.02
807 809 7.219484 ACCATGAATAAGGTGTTTTCAAGAG 57.781 36.000 0.00 0.00 36.60 2.85
808 810 7.004086 ACCATGAATAAGGTGTTTTCAAGAGA 58.996 34.615 0.00 0.00 36.60 3.10
809 811 7.671398 ACCATGAATAAGGTGTTTTCAAGAGAT 59.329 33.333 0.00 0.00 36.60 2.75
810 812 9.177608 CCATGAATAAGGTGTTTTCAAGAGATA 57.822 33.333 0.00 0.00 33.45 1.98
811 813 9.994432 CATGAATAAGGTGTTTTCAAGAGATAC 57.006 33.333 0.00 0.00 33.45 2.24
812 814 9.739276 ATGAATAAGGTGTTTTCAAGAGATACA 57.261 29.630 0.00 0.00 33.45 2.29
813 815 9.739276 TGAATAAGGTGTTTTCAAGAGATACAT 57.261 29.630 0.00 0.00 0.00 2.29
914 916 9.959721 ATGCGTATGAATAAAATTATACTCCCT 57.040 29.630 0.00 0.00 0.00 4.20
915 917 9.431887 TGCGTATGAATAAAATTATACTCCCTC 57.568 33.333 0.00 0.00 0.00 4.30
916 918 8.880750 GCGTATGAATAAAATTATACTCCCTCC 58.119 37.037 0.00 0.00 0.00 4.30
917 919 9.084164 CGTATGAATAAAATTATACTCCCTCCG 57.916 37.037 0.00 0.00 0.00 4.63
918 920 9.939802 GTATGAATAAAATTATACTCCCTCCGT 57.060 33.333 0.00 0.00 0.00 4.69
920 922 7.447594 TGAATAAAATTATACTCCCTCCGTCC 58.552 38.462 0.00 0.00 0.00 4.79
921 923 4.701651 AAAATTATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
922 924 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
923 925 3.562108 ATTATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
924 926 4.687262 ATTATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
925 927 4.474303 TTATACTCCCTCCGTCCCATAA 57.526 45.455 0.00 0.00 0.00 1.90
926 928 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
927 929 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
928 930 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
929 931 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
930 932 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
931 933 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
932 934 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
933 935 6.013639 ACTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
934 936 4.941873 CCCTCCGTCCCATAATATAAAAGC 59.058 45.833 0.00 0.00 0.00 3.51
935 937 4.630069 CCTCCGTCCCATAATATAAAAGCG 59.370 45.833 0.00 0.00 0.00 4.68
936 938 5.217978 TCCGTCCCATAATATAAAAGCGT 57.782 39.130 0.00 0.00 0.00 5.07
937 939 5.613329 TCCGTCCCATAATATAAAAGCGTT 58.387 37.500 0.00 0.00 0.00 4.84
938 940 6.056884 TCCGTCCCATAATATAAAAGCGTTT 58.943 36.000 2.53 2.53 0.00 3.60
939 941 6.543100 TCCGTCCCATAATATAAAAGCGTTTT 59.457 34.615 2.19 1.29 36.67 2.43
940 942 7.067251 TCCGTCCCATAATATAAAAGCGTTTTT 59.933 33.333 14.50 14.50 39.69 1.94
941 943 7.166804 CCGTCCCATAATATAAAAGCGTTTTTG 59.833 37.037 18.77 2.23 37.12 2.44
942 944 7.166804 CGTCCCATAATATAAAAGCGTTTTTGG 59.833 37.037 18.77 10.57 37.12 3.28
943 945 7.436970 GTCCCATAATATAAAAGCGTTTTTGGG 59.563 37.037 18.77 18.09 41.39 4.12
944 946 7.342284 TCCCATAATATAAAAGCGTTTTTGGGA 59.658 33.333 20.61 20.61 44.14 4.37
945 947 7.651704 CCCATAATATAAAAGCGTTTTTGGGAG 59.348 37.037 18.39 4.97 42.07 4.30
946 948 8.194769 CCATAATATAAAAGCGTTTTTGGGAGT 58.805 33.333 18.77 6.73 37.12 3.85
949 951 5.638596 ATAAAAGCGTTTTTGGGAGTAGG 57.361 39.130 18.77 0.00 37.12 3.18
950 952 1.905637 AAGCGTTTTTGGGAGTAGGG 58.094 50.000 0.00 0.00 0.00 3.53
951 953 0.037734 AGCGTTTTTGGGAGTAGGGG 59.962 55.000 0.00 0.00 0.00 4.79
952 954 0.251033 GCGTTTTTGGGAGTAGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
953 955 1.530323 CGTTTTTGGGAGTAGGGGTG 58.470 55.000 0.00 0.00 0.00 4.61
954 956 1.202842 CGTTTTTGGGAGTAGGGGTGT 60.203 52.381 0.00 0.00 0.00 4.16
955 957 2.750471 CGTTTTTGGGAGTAGGGGTGTT 60.750 50.000 0.00 0.00 0.00 3.32
956 958 2.889045 GTTTTTGGGAGTAGGGGTGTTC 59.111 50.000 0.00 0.00 0.00 3.18
957 959 1.069775 TTTGGGAGTAGGGGTGTTCC 58.930 55.000 0.00 0.00 0.00 3.62
958 960 0.195096 TTGGGAGTAGGGGTGTTCCT 59.805 55.000 0.00 0.00 40.79 3.36
959 961 1.095130 TGGGAGTAGGGGTGTTCCTA 58.905 55.000 0.00 0.00 38.30 2.94
960 962 1.437945 TGGGAGTAGGGGTGTTCCTAA 59.562 52.381 0.00 0.00 40.71 2.69
961 963 2.157973 TGGGAGTAGGGGTGTTCCTAAA 60.158 50.000 0.00 0.00 40.71 1.85
962 964 2.914941 GGGAGTAGGGGTGTTCCTAAAA 59.085 50.000 0.00 0.00 40.71 1.52
963 965 3.331591 GGGAGTAGGGGTGTTCCTAAAAA 59.668 47.826 0.00 0.00 40.71 1.94
986 988 5.862678 AAGAAAAATCCCTCGTCCAAAAA 57.137 34.783 0.00 0.00 0.00 1.94
1016 1018 2.250924 CTGGCAAAATTCCCCTTCACT 58.749 47.619 0.00 0.00 0.00 3.41
1017 1019 2.634453 CTGGCAAAATTCCCCTTCACTT 59.366 45.455 0.00 0.00 0.00 3.16
1018 1020 2.632512 TGGCAAAATTCCCCTTCACTTC 59.367 45.455 0.00 0.00 0.00 3.01
1019 1021 2.028112 GGCAAAATTCCCCTTCACTTCC 60.028 50.000 0.00 0.00 0.00 3.46
1020 1022 2.899900 GCAAAATTCCCCTTCACTTCCT 59.100 45.455 0.00 0.00 0.00 3.36
1021 1023 3.056536 GCAAAATTCCCCTTCACTTCCTC 60.057 47.826 0.00 0.00 0.00 3.71
1022 1024 4.411013 CAAAATTCCCCTTCACTTCCTCT 58.589 43.478 0.00 0.00 0.00 3.69
1023 1025 3.728385 AATTCCCCTTCACTTCCTCTG 57.272 47.619 0.00 0.00 0.00 3.35
1128 1130 3.645687 CCTCCTCTATTCCTCCCTCAAAG 59.354 52.174 0.00 0.00 0.00 2.77
1150 1170 3.749064 GCTCCGTGGTCGAGCTCA 61.749 66.667 16.64 0.00 39.71 4.26
1162 1182 1.880340 GAGCTCATCGCCTTCCACG 60.880 63.158 9.40 0.00 40.39 4.94
1209 1229 3.827898 CGCGTGGTCCTCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
1216 1236 4.382541 TCCTCTCCTCCGGCAGCA 62.383 66.667 0.00 0.00 0.00 4.41
1218 1238 3.847602 CTCTCCTCCGGCAGCAGG 61.848 72.222 4.96 4.96 0.00 4.85
1244 1264 4.587189 CCTCGTCGCCGGATTCCC 62.587 72.222 5.05 0.00 33.95 3.97
1245 1265 4.587189 CTCGTCGCCGGATTCCCC 62.587 72.222 5.05 0.00 33.95 4.81
1305 1336 2.747460 CACGGCCATCCACCTGTG 60.747 66.667 2.24 0.00 0.00 3.66
1353 1385 1.039856 CCTTTTCCCCACCACACAAG 58.960 55.000 0.00 0.00 0.00 3.16
1502 1534 1.154016 AACGATCTCAGGCGACACG 60.154 57.895 0.00 0.00 0.00 4.49
1583 1615 7.116805 CCGATGAACATCAGAATATTCGATTCA 59.883 37.037 18.08 18.08 37.69 2.57
1645 1679 4.422073 TCCCGCTCATATCTTGTTCAAT 57.578 40.909 0.00 0.00 0.00 2.57
1646 1680 4.780815 TCCCGCTCATATCTTGTTCAATT 58.219 39.130 0.00 0.00 0.00 2.32
1849 2053 2.222027 GCTAGAGGCGCCATTAATTGT 58.778 47.619 31.54 7.71 0.00 2.71
1870 2074 7.636259 TTGTTTTTATTTTTCTGATCTGGCG 57.364 32.000 0.00 0.00 0.00 5.69
1901 2105 3.341629 CCATGGGGTGCCTGAGGT 61.342 66.667 2.85 0.00 0.00 3.85
2189 2393 8.504812 TGATGTTGCAAAAGCTATATTGACTA 57.495 30.769 6.41 0.00 0.00 2.59
2193 2397 7.174080 TGTTGCAAAAGCTATATTGACTACACA 59.826 33.333 0.00 0.00 0.00 3.72
2266 2470 3.939837 CTGGAGCTTGCGAAGGCGA 62.940 63.158 0.00 0.00 44.10 5.54
2310 2514 0.598065 GTGGCCGCATTTCTGAAGTT 59.402 50.000 12.58 0.00 0.00 2.66
2999 3204 9.836864 TGATATGCTGAACATTTATGTCTTAGT 57.163 29.630 0.00 0.00 40.80 2.24
3026 3231 4.099419 TCAGTGCATTCCATGTCGTAGTAT 59.901 41.667 0.00 0.00 0.00 2.12
3057 3262 6.320672 CCTCTTCGGTTCCTAGTAGTTGATAA 59.679 42.308 0.00 0.00 0.00 1.75
3754 3983 3.044894 CCCTCCTCTTCTTAGATGCCTT 58.955 50.000 0.00 0.00 0.00 4.35
4748 4992 8.490311 TGGAGGAAACCAAAAGAACATATTTTT 58.510 29.630 0.00 0.00 36.96 1.94
5308 5644 8.821894 GTCATGTCTTATTCCATTAGAAGTGAC 58.178 37.037 0.00 0.00 38.07 3.67
5664 6063 6.145696 AGTTGCAGATCGAACAAACTAACTAC 59.854 38.462 6.64 0.00 0.00 2.73
6025 6449 0.820871 GACCGGATCTCAGCTTGTCT 59.179 55.000 9.46 0.00 0.00 3.41
6290 6723 1.005630 CTCCGATTCCATCTCCGGC 60.006 63.158 0.00 0.00 41.55 6.13
6531 6972 2.988010 TAGGAAGAATGCTCGCATGT 57.012 45.000 4.99 0.00 36.68 3.21
6613 7054 3.521531 TGGGCAGTGGACAATAATCTACA 59.478 43.478 0.00 0.00 32.75 2.74
6619 7060 7.661437 GGCAGTGGACAATAATCTACAATATCA 59.339 37.037 0.00 0.00 32.75 2.15
6663 7104 5.387113 AGGGATATTATTCACTGGCACAA 57.613 39.130 0.00 0.00 38.70 3.33
6672 7113 2.288666 TCACTGGCACAACTGAACTTC 58.711 47.619 0.00 0.00 38.70 3.01
6694 7135 2.685897 TGTTGGTGCTAGTTTGTGGAAC 59.314 45.455 0.00 0.00 38.58 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
501 503 6.907877 TGTAAAGCACACACAGATCTGAAAGA 60.908 38.462 29.27 0.44 39.11 2.52
599 601 1.540267 TGAACGTATTTGGGCCAAGG 58.460 50.000 19.90 12.37 0.00 3.61
600 602 2.223249 CGATGAACGTATTTGGGCCAAG 60.223 50.000 19.90 10.38 37.22 3.61
601 603 1.740585 CGATGAACGTATTTGGGCCAA 59.259 47.619 16.66 16.66 37.22 4.52
602 604 1.066071 TCGATGAACGTATTTGGGCCA 60.066 47.619 0.00 0.00 43.13 5.36
603 605 1.658994 TCGATGAACGTATTTGGGCC 58.341 50.000 0.00 0.00 43.13 5.80
604 606 2.869801 TGATCGATGAACGTATTTGGGC 59.130 45.455 0.54 0.00 43.13 5.36
605 607 4.808895 TCTTGATCGATGAACGTATTTGGG 59.191 41.667 0.54 0.00 43.13 4.12
606 608 5.520288 AGTCTTGATCGATGAACGTATTTGG 59.480 40.000 0.54 0.00 43.13 3.28
607 609 6.575083 AGTCTTGATCGATGAACGTATTTG 57.425 37.500 0.54 0.00 43.13 2.32
608 610 6.255887 GGAAGTCTTGATCGATGAACGTATTT 59.744 38.462 0.54 0.00 43.13 1.40
609 611 5.749109 GGAAGTCTTGATCGATGAACGTATT 59.251 40.000 0.54 0.00 43.13 1.89
610 612 5.282510 GGAAGTCTTGATCGATGAACGTAT 58.717 41.667 0.54 0.00 43.13 3.06
611 613 4.439700 GGGAAGTCTTGATCGATGAACGTA 60.440 45.833 0.54 0.00 43.13 3.57
612 614 3.512680 GGAAGTCTTGATCGATGAACGT 58.487 45.455 0.54 0.00 43.13 3.99
613 615 2.860735 GGGAAGTCTTGATCGATGAACG 59.139 50.000 0.54 0.00 44.09 3.95
614 616 4.130286 AGGGAAGTCTTGATCGATGAAC 57.870 45.455 0.54 0.00 0.00 3.18
615 617 5.835819 AGATAGGGAAGTCTTGATCGATGAA 59.164 40.000 0.54 0.00 0.00 2.57
616 618 5.389520 AGATAGGGAAGTCTTGATCGATGA 58.610 41.667 0.54 0.00 0.00 2.92
617 619 5.720371 AGATAGGGAAGTCTTGATCGATG 57.280 43.478 0.54 0.00 0.00 3.84
618 620 6.553100 AGAAAGATAGGGAAGTCTTGATCGAT 59.447 38.462 0.00 0.00 35.03 3.59
619 621 5.894393 AGAAAGATAGGGAAGTCTTGATCGA 59.106 40.000 0.00 0.00 35.03 3.59
620 622 6.155475 AGAAAGATAGGGAAGTCTTGATCG 57.845 41.667 0.00 0.00 35.03 3.69
621 623 8.472007 TCTAGAAAGATAGGGAAGTCTTGATC 57.528 38.462 0.00 0.00 35.03 2.92
622 624 8.869109 CATCTAGAAAGATAGGGAAGTCTTGAT 58.131 37.037 0.00 0.00 40.65 2.57
623 625 7.288852 CCATCTAGAAAGATAGGGAAGTCTTGA 59.711 40.741 0.00 0.00 40.65 3.02
624 626 7.441017 CCATCTAGAAAGATAGGGAAGTCTTG 58.559 42.308 0.00 0.00 40.65 3.02
625 627 6.556874 CCCATCTAGAAAGATAGGGAAGTCTT 59.443 42.308 13.38 0.00 44.85 3.01
626 628 6.081356 CCCATCTAGAAAGATAGGGAAGTCT 58.919 44.000 13.38 0.00 44.85 3.24
627 629 5.279758 GCCCATCTAGAAAGATAGGGAAGTC 60.280 48.000 18.92 5.49 44.85 3.01
628 630 4.595350 GCCCATCTAGAAAGATAGGGAAGT 59.405 45.833 18.92 0.00 44.85 3.01
629 631 4.322349 CGCCCATCTAGAAAGATAGGGAAG 60.322 50.000 18.92 11.83 44.85 3.46
630 632 3.578716 CGCCCATCTAGAAAGATAGGGAA 59.421 47.826 18.92 0.00 44.85 3.97
631 633 3.165875 CGCCCATCTAGAAAGATAGGGA 58.834 50.000 18.92 0.00 44.85 4.20
632 634 3.056465 GTCGCCCATCTAGAAAGATAGGG 60.056 52.174 0.00 13.93 44.85 3.53
633 635 3.829601 AGTCGCCCATCTAGAAAGATAGG 59.170 47.826 0.00 0.00 42.23 2.57
634 636 4.520874 TGAGTCGCCCATCTAGAAAGATAG 59.479 45.833 0.00 0.00 40.65 2.08
635 637 4.470602 TGAGTCGCCCATCTAGAAAGATA 58.529 43.478 0.00 0.00 40.65 1.98
636 638 3.300388 TGAGTCGCCCATCTAGAAAGAT 58.700 45.455 0.00 0.00 43.54 2.40
637 639 2.735151 TGAGTCGCCCATCTAGAAAGA 58.265 47.619 0.00 0.00 35.80 2.52
638 640 3.452474 CTTGAGTCGCCCATCTAGAAAG 58.548 50.000 0.00 0.00 0.00 2.62
639 641 2.168521 CCTTGAGTCGCCCATCTAGAAA 59.831 50.000 0.00 0.00 0.00 2.52
640 642 1.757118 CCTTGAGTCGCCCATCTAGAA 59.243 52.381 0.00 0.00 0.00 2.10
641 643 1.403814 CCTTGAGTCGCCCATCTAGA 58.596 55.000 0.00 0.00 0.00 2.43
642 644 0.249657 GCCTTGAGTCGCCCATCTAG 60.250 60.000 0.00 0.00 0.00 2.43
643 645 1.823295 GCCTTGAGTCGCCCATCTA 59.177 57.895 0.00 0.00 0.00 1.98
644 646 2.586792 GCCTTGAGTCGCCCATCT 59.413 61.111 0.00 0.00 0.00 2.90
645 647 2.892425 CGCCTTGAGTCGCCCATC 60.892 66.667 0.00 0.00 0.00 3.51
646 648 2.748058 AAACGCCTTGAGTCGCCCAT 62.748 55.000 0.00 0.00 0.00 4.00
647 649 2.951475 AAAACGCCTTGAGTCGCCCA 62.951 55.000 0.00 0.00 0.00 5.36
648 650 2.183858 GAAAACGCCTTGAGTCGCCC 62.184 60.000 0.00 0.00 0.00 6.13
649 651 1.206831 GAAAACGCCTTGAGTCGCC 59.793 57.895 0.00 0.00 0.00 5.54
650 652 0.306533 TTGAAAACGCCTTGAGTCGC 59.693 50.000 0.00 0.00 0.00 5.19
651 653 2.748461 TTTGAAAACGCCTTGAGTCG 57.252 45.000 0.00 0.00 0.00 4.18
652 654 4.755191 GTTTTTGAAAACGCCTTGAGTC 57.245 40.909 3.84 0.00 38.89 3.36
671 673 9.906660 CACACACAAACATTACCAATAATAGTT 57.093 29.630 0.00 0.00 29.44 2.24
672 674 9.073475 ACACACACAAACATTACCAATAATAGT 57.927 29.630 0.00 0.00 29.44 2.12
673 675 9.340695 CACACACACAAACATTACCAATAATAG 57.659 33.333 0.00 0.00 29.44 1.73
674 676 8.300286 CCACACACACAAACATTACCAATAATA 58.700 33.333 0.00 0.00 29.44 0.98
675 677 7.014711 TCCACACACACAAACATTACCAATAAT 59.985 33.333 0.00 0.00 0.00 1.28
676 678 6.321435 TCCACACACACAAACATTACCAATAA 59.679 34.615 0.00 0.00 0.00 1.40
677 679 5.828328 TCCACACACACAAACATTACCAATA 59.172 36.000 0.00 0.00 0.00 1.90
678 680 4.646945 TCCACACACACAAACATTACCAAT 59.353 37.500 0.00 0.00 0.00 3.16
679 681 4.017126 TCCACACACACAAACATTACCAA 58.983 39.130 0.00 0.00 0.00 3.67
680 682 3.621558 TCCACACACACAAACATTACCA 58.378 40.909 0.00 0.00 0.00 3.25
681 683 4.640789 TTCCACACACACAAACATTACC 57.359 40.909 0.00 0.00 0.00 2.85
682 684 5.040635 CCTTTCCACACACACAAACATTAC 58.959 41.667 0.00 0.00 0.00 1.89
683 685 4.707448 ACCTTTCCACACACACAAACATTA 59.293 37.500 0.00 0.00 0.00 1.90
684 686 3.513515 ACCTTTCCACACACACAAACATT 59.486 39.130 0.00 0.00 0.00 2.71
685 687 3.096092 ACCTTTCCACACACACAAACAT 58.904 40.909 0.00 0.00 0.00 2.71
686 688 2.230025 CACCTTTCCACACACACAAACA 59.770 45.455 0.00 0.00 0.00 2.83
687 689 2.490115 TCACCTTTCCACACACACAAAC 59.510 45.455 0.00 0.00 0.00 2.93
688 690 2.490115 GTCACCTTTCCACACACACAAA 59.510 45.455 0.00 0.00 0.00 2.83
689 691 2.088423 GTCACCTTTCCACACACACAA 58.912 47.619 0.00 0.00 0.00 3.33
690 692 1.003696 TGTCACCTTTCCACACACACA 59.996 47.619 0.00 0.00 0.00 3.72
691 693 1.745232 TGTCACCTTTCCACACACAC 58.255 50.000 0.00 0.00 0.00 3.82
692 694 2.088423 GTTGTCACCTTTCCACACACA 58.912 47.619 0.00 0.00 0.00 3.72
693 695 2.088423 TGTTGTCACCTTTCCACACAC 58.912 47.619 0.00 0.00 0.00 3.82
694 696 2.498644 TGTTGTCACCTTTCCACACA 57.501 45.000 0.00 0.00 0.00 3.72
695 697 2.032030 CGATGTTGTCACCTTTCCACAC 60.032 50.000 0.00 0.00 0.00 3.82
696 698 2.217750 CGATGTTGTCACCTTTCCACA 58.782 47.619 0.00 0.00 0.00 4.17
697 699 2.218603 ACGATGTTGTCACCTTTCCAC 58.781 47.619 0.00 0.00 0.00 4.02
698 700 2.616376 CAACGATGTTGTCACCTTTCCA 59.384 45.455 1.59 0.00 0.00 3.53
699 701 2.604614 GCAACGATGTTGTCACCTTTCC 60.605 50.000 10.96 0.00 0.00 3.13
700 702 2.290641 AGCAACGATGTTGTCACCTTTC 59.709 45.455 10.96 0.00 0.00 2.62
701 703 2.290641 GAGCAACGATGTTGTCACCTTT 59.709 45.455 10.96 0.00 0.00 3.11
702 704 1.873591 GAGCAACGATGTTGTCACCTT 59.126 47.619 10.96 0.00 0.00 3.50
703 705 1.070758 AGAGCAACGATGTTGTCACCT 59.929 47.619 10.96 0.25 0.00 4.00
704 706 1.512926 AGAGCAACGATGTTGTCACC 58.487 50.000 10.96 0.00 0.00 4.02
705 707 3.318017 ACTAGAGCAACGATGTTGTCAC 58.682 45.455 10.96 3.40 0.00 3.67
706 708 3.575630 GACTAGAGCAACGATGTTGTCA 58.424 45.455 10.96 0.00 0.00 3.58
707 709 2.924290 GGACTAGAGCAACGATGTTGTC 59.076 50.000 10.96 7.55 0.00 3.18
708 710 2.299013 TGGACTAGAGCAACGATGTTGT 59.701 45.455 10.96 0.00 0.00 3.32
709 711 2.959516 TGGACTAGAGCAACGATGTTG 58.040 47.619 5.34 5.34 0.00 3.33
710 712 3.678056 TTGGACTAGAGCAACGATGTT 57.322 42.857 0.00 0.00 0.00 2.71
711 713 3.895232 ATTGGACTAGAGCAACGATGT 57.105 42.857 0.00 0.00 0.00 3.06
712 714 3.242543 GCAATTGGACTAGAGCAACGATG 60.243 47.826 7.72 0.00 0.00 3.84
713 715 2.939103 GCAATTGGACTAGAGCAACGAT 59.061 45.455 7.72 0.00 0.00 3.73
714 716 2.289382 TGCAATTGGACTAGAGCAACGA 60.289 45.455 7.72 0.00 0.00 3.85
715 717 2.076100 TGCAATTGGACTAGAGCAACG 58.924 47.619 7.72 0.00 0.00 4.10
716 718 2.159462 GCTGCAATTGGACTAGAGCAAC 60.159 50.000 7.72 0.00 0.00 4.17
717 719 2.086869 GCTGCAATTGGACTAGAGCAA 58.913 47.619 7.72 0.00 0.00 3.91
718 720 1.280133 AGCTGCAATTGGACTAGAGCA 59.720 47.619 7.72 0.00 0.00 4.26
719 721 2.035530 AGCTGCAATTGGACTAGAGC 57.964 50.000 7.72 3.76 0.00 4.09
720 722 2.941720 GGAAGCTGCAATTGGACTAGAG 59.058 50.000 7.72 0.00 0.00 2.43
721 723 2.573462 AGGAAGCTGCAATTGGACTAGA 59.427 45.455 7.72 0.00 0.00 2.43
722 724 2.996631 AGGAAGCTGCAATTGGACTAG 58.003 47.619 7.72 0.00 0.00 2.57
723 725 3.439857 AAGGAAGCTGCAATTGGACTA 57.560 42.857 7.72 0.00 0.00 2.59
724 726 2.299326 AAGGAAGCTGCAATTGGACT 57.701 45.000 7.72 2.06 0.00 3.85
725 727 4.158394 TCAATAAGGAAGCTGCAATTGGAC 59.842 41.667 7.72 0.00 0.00 4.02
726 728 4.343231 TCAATAAGGAAGCTGCAATTGGA 58.657 39.130 7.72 2.96 0.00 3.53
727 729 4.724074 TCAATAAGGAAGCTGCAATTGG 57.276 40.909 7.72 0.00 0.00 3.16
728 730 5.717119 ACTTCAATAAGGAAGCTGCAATTG 58.283 37.500 1.02 0.00 46.48 2.32
729 731 5.713861 AGACTTCAATAAGGAAGCTGCAATT 59.286 36.000 1.02 0.00 46.48 2.32
730 732 5.259632 AGACTTCAATAAGGAAGCTGCAAT 58.740 37.500 1.02 0.00 46.48 3.56
731 733 4.655963 AGACTTCAATAAGGAAGCTGCAA 58.344 39.130 1.02 0.00 46.48 4.08
732 734 4.292186 AGACTTCAATAAGGAAGCTGCA 57.708 40.909 1.02 0.00 46.48 4.41
733 735 5.397326 CAAAGACTTCAATAAGGAAGCTGC 58.603 41.667 3.01 0.00 46.48 5.25
734 736 5.707298 TCCAAAGACTTCAATAAGGAAGCTG 59.293 40.000 3.01 0.00 46.48 4.24
735 737 5.880901 TCCAAAGACTTCAATAAGGAAGCT 58.119 37.500 3.01 0.00 46.48 3.74
736 738 5.707764 ACTCCAAAGACTTCAATAAGGAAGC 59.292 40.000 3.01 0.00 46.48 3.86
738 740 9.807921 AAATACTCCAAAGACTTCAATAAGGAA 57.192 29.630 0.00 0.00 37.01 3.36
739 741 9.449719 GAAATACTCCAAAGACTTCAATAAGGA 57.550 33.333 0.00 0.00 37.01 3.36
740 742 9.454859 AGAAATACTCCAAAGACTTCAATAAGG 57.545 33.333 0.00 0.00 37.01 2.69
745 747 9.712305 CTAGAAGAAATACTCCAAAGACTTCAA 57.288 33.333 0.00 0.00 36.15 2.69
746 748 7.819900 GCTAGAAGAAATACTCCAAAGACTTCA 59.180 37.037 0.00 0.00 36.15 3.02
747 749 7.819900 TGCTAGAAGAAATACTCCAAAGACTTC 59.180 37.037 0.00 0.00 34.62 3.01
748 750 7.680730 TGCTAGAAGAAATACTCCAAAGACTT 58.319 34.615 0.00 0.00 0.00 3.01
749 751 7.246171 TGCTAGAAGAAATACTCCAAAGACT 57.754 36.000 0.00 0.00 0.00 3.24
750 752 7.907214 TTGCTAGAAGAAATACTCCAAAGAC 57.093 36.000 0.00 0.00 0.00 3.01
751 753 7.936847 TGTTTGCTAGAAGAAATACTCCAAAGA 59.063 33.333 0.00 0.00 0.00 2.52
752 754 8.099364 TGTTTGCTAGAAGAAATACTCCAAAG 57.901 34.615 0.00 0.00 0.00 2.77
753 755 8.635765 ATGTTTGCTAGAAGAAATACTCCAAA 57.364 30.769 0.00 0.00 0.00 3.28
754 756 8.514594 CAATGTTTGCTAGAAGAAATACTCCAA 58.485 33.333 0.00 0.00 0.00 3.53
755 757 7.882791 TCAATGTTTGCTAGAAGAAATACTCCA 59.117 33.333 0.00 0.00 0.00 3.86
756 758 8.268850 TCAATGTTTGCTAGAAGAAATACTCC 57.731 34.615 0.00 0.00 0.00 3.85
759 761 9.937175 GGTATCAATGTTTGCTAGAAGAAATAC 57.063 33.333 0.00 0.00 0.00 1.89
760 762 9.679661 TGGTATCAATGTTTGCTAGAAGAAATA 57.320 29.630 0.00 0.00 0.00 1.40
761 763 8.579850 TGGTATCAATGTTTGCTAGAAGAAAT 57.420 30.769 0.00 0.00 0.00 2.17
762 764 7.994425 TGGTATCAATGTTTGCTAGAAGAAA 57.006 32.000 0.00 0.00 0.00 2.52
763 765 7.828717 TCATGGTATCAATGTTTGCTAGAAGAA 59.171 33.333 0.00 0.00 0.00 2.52
764 766 7.337938 TCATGGTATCAATGTTTGCTAGAAGA 58.662 34.615 0.00 0.00 0.00 2.87
765 767 7.558161 TCATGGTATCAATGTTTGCTAGAAG 57.442 36.000 0.00 0.00 0.00 2.85
766 768 7.936496 TTCATGGTATCAATGTTTGCTAGAA 57.064 32.000 0.00 0.00 0.00 2.10
767 769 9.625747 TTATTCATGGTATCAATGTTTGCTAGA 57.374 29.630 0.00 0.00 0.00 2.43
768 770 9.888878 CTTATTCATGGTATCAATGTTTGCTAG 57.111 33.333 0.00 0.00 0.00 3.42
769 771 8.849168 CCTTATTCATGGTATCAATGTTTGCTA 58.151 33.333 0.00 0.00 0.00 3.49
770 772 7.342799 ACCTTATTCATGGTATCAATGTTTGCT 59.657 33.333 0.00 0.00 34.36 3.91
771 773 7.436080 CACCTTATTCATGGTATCAATGTTTGC 59.564 37.037 0.00 0.00 34.79 3.68
772 774 8.469200 ACACCTTATTCATGGTATCAATGTTTG 58.531 33.333 0.00 0.00 34.79 2.93
773 775 8.593945 ACACCTTATTCATGGTATCAATGTTT 57.406 30.769 0.00 0.00 34.79 2.83
774 776 8.593945 AACACCTTATTCATGGTATCAATGTT 57.406 30.769 0.00 0.00 34.79 2.71
775 777 8.593945 AAACACCTTATTCATGGTATCAATGT 57.406 30.769 0.00 0.00 34.79 2.71
776 778 9.520204 GAAAACACCTTATTCATGGTATCAATG 57.480 33.333 0.00 0.00 34.79 2.82
777 779 9.253832 TGAAAACACCTTATTCATGGTATCAAT 57.746 29.630 0.00 0.00 34.79 2.57
778 780 8.642935 TGAAAACACCTTATTCATGGTATCAA 57.357 30.769 0.00 0.00 34.79 2.57
779 781 8.642935 TTGAAAACACCTTATTCATGGTATCA 57.357 30.769 0.00 0.00 34.79 2.15
780 782 8.956426 TCTTGAAAACACCTTATTCATGGTATC 58.044 33.333 0.00 0.00 34.79 2.24
781 783 8.877864 TCTTGAAAACACCTTATTCATGGTAT 57.122 30.769 0.00 0.00 34.79 2.73
782 784 8.160765 TCTCTTGAAAACACCTTATTCATGGTA 58.839 33.333 0.00 0.00 34.79 3.25
783 785 7.004086 TCTCTTGAAAACACCTTATTCATGGT 58.996 34.615 0.00 0.00 33.45 3.55
784 786 7.452880 TCTCTTGAAAACACCTTATTCATGG 57.547 36.000 0.00 0.00 33.45 3.66
785 787 9.994432 GTATCTCTTGAAAACACCTTATTCATG 57.006 33.333 0.00 0.00 33.45 3.07
786 788 9.739276 TGTATCTCTTGAAAACACCTTATTCAT 57.261 29.630 0.00 0.00 33.45 2.57
787 789 9.739276 ATGTATCTCTTGAAAACACCTTATTCA 57.261 29.630 0.00 0.00 0.00 2.57
888 890 9.959721 AGGGAGTATAATTTTATTCATACGCAT 57.040 29.630 1.93 0.00 0.00 4.73
889 891 9.431887 GAGGGAGTATAATTTTATTCATACGCA 57.568 33.333 1.93 0.00 0.00 5.24
890 892 8.880750 GGAGGGAGTATAATTTTATTCATACGC 58.119 37.037 1.93 0.00 0.00 4.42
891 893 9.084164 CGGAGGGAGTATAATTTTATTCATACG 57.916 37.037 1.93 0.00 0.00 3.06
892 894 9.939802 ACGGAGGGAGTATAATTTTATTCATAC 57.060 33.333 1.93 0.00 0.00 2.39
894 896 8.101419 GGACGGAGGGAGTATAATTTTATTCAT 58.899 37.037 1.93 0.00 0.00 2.57
895 897 7.447594 GGACGGAGGGAGTATAATTTTATTCA 58.552 38.462 1.93 0.00 0.00 2.57
896 898 6.877855 GGGACGGAGGGAGTATAATTTTATTC 59.122 42.308 0.00 0.00 0.00 1.75
897 899 6.330778 TGGGACGGAGGGAGTATAATTTTATT 59.669 38.462 0.00 0.00 0.00 1.40
898 900 5.847817 TGGGACGGAGGGAGTATAATTTTAT 59.152 40.000 0.00 0.00 0.00 1.40
899 901 5.218179 TGGGACGGAGGGAGTATAATTTTA 58.782 41.667 0.00 0.00 0.00 1.52
900 902 4.042174 TGGGACGGAGGGAGTATAATTTT 58.958 43.478 0.00 0.00 0.00 1.82
901 903 3.660959 TGGGACGGAGGGAGTATAATTT 58.339 45.455 0.00 0.00 0.00 1.82
902 904 3.339713 TGGGACGGAGGGAGTATAATT 57.660 47.619 0.00 0.00 0.00 1.40
903 905 3.562108 ATGGGACGGAGGGAGTATAAT 57.438 47.619 0.00 0.00 0.00 1.28
904 906 4.474303 TTATGGGACGGAGGGAGTATAA 57.526 45.455 0.00 0.00 0.00 0.98
905 907 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
906 908 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
907 909 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
908 910 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
909 911 6.368779 TTTTATATTATGGGACGGAGGGAG 57.631 41.667 0.00 0.00 0.00 4.30
910 912 5.280317 GCTTTTATATTATGGGACGGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
911 913 4.941873 GCTTTTATATTATGGGACGGAGGG 59.058 45.833 0.00 0.00 0.00 4.30
912 914 4.630069 CGCTTTTATATTATGGGACGGAGG 59.370 45.833 0.00 0.00 0.00 4.30
913 915 5.235516 ACGCTTTTATATTATGGGACGGAG 58.764 41.667 0.00 0.00 0.00 4.63
914 916 5.217978 ACGCTTTTATATTATGGGACGGA 57.782 39.130 0.00 0.00 0.00 4.69
915 917 5.934935 AACGCTTTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
916 918 7.166804 CCAAAAACGCTTTTATATTATGGGACG 59.833 37.037 0.00 0.00 32.85 4.79
917 919 7.436970 CCCAAAAACGCTTTTATATTATGGGAC 59.563 37.037 15.74 0.00 42.07 4.46
918 920 7.342284 TCCCAAAAACGCTTTTATATTATGGGA 59.658 33.333 17.64 17.64 44.14 4.37
919 921 7.493367 TCCCAAAAACGCTTTTATATTATGGG 58.507 34.615 15.17 15.17 41.39 4.00
920 922 8.194769 ACTCCCAAAAACGCTTTTATATTATGG 58.805 33.333 0.00 0.79 32.85 2.74
923 925 8.895737 CCTACTCCCAAAAACGCTTTTATATTA 58.104 33.333 0.00 0.00 32.85 0.98
924 926 7.147966 CCCTACTCCCAAAAACGCTTTTATATT 60.148 37.037 0.00 0.00 32.85 1.28
925 927 6.320418 CCCTACTCCCAAAAACGCTTTTATAT 59.680 38.462 0.00 0.00 32.85 0.86
926 928 5.648960 CCCTACTCCCAAAAACGCTTTTATA 59.351 40.000 0.00 0.00 32.85 0.98
927 929 4.461431 CCCTACTCCCAAAAACGCTTTTAT 59.539 41.667 0.00 0.00 32.85 1.40
928 930 3.822167 CCCTACTCCCAAAAACGCTTTTA 59.178 43.478 0.00 0.00 32.85 1.52
929 931 2.626266 CCCTACTCCCAAAAACGCTTTT 59.374 45.455 0.00 0.00 35.02 2.27
930 932 2.235891 CCCTACTCCCAAAAACGCTTT 58.764 47.619 0.00 0.00 0.00 3.51
931 933 1.546998 CCCCTACTCCCAAAAACGCTT 60.547 52.381 0.00 0.00 0.00 4.68
932 934 0.037734 CCCCTACTCCCAAAAACGCT 59.962 55.000 0.00 0.00 0.00 5.07
933 935 0.251033 ACCCCTACTCCCAAAAACGC 60.251 55.000 0.00 0.00 0.00 4.84
934 936 1.202842 ACACCCCTACTCCCAAAAACG 60.203 52.381 0.00 0.00 0.00 3.60
935 937 2.670019 ACACCCCTACTCCCAAAAAC 57.330 50.000 0.00 0.00 0.00 2.43
936 938 2.158430 GGAACACCCCTACTCCCAAAAA 60.158 50.000 0.00 0.00 0.00 1.94
937 939 1.426215 GGAACACCCCTACTCCCAAAA 59.574 52.381 0.00 0.00 0.00 2.44
938 940 1.069775 GGAACACCCCTACTCCCAAA 58.930 55.000 0.00 0.00 0.00 3.28
939 941 0.195096 AGGAACACCCCTACTCCCAA 59.805 55.000 0.00 0.00 34.07 4.12
940 942 1.095130 TAGGAACACCCCTACTCCCA 58.905 55.000 0.00 0.00 37.74 4.37
941 943 2.259014 TTAGGAACACCCCTACTCCC 57.741 55.000 0.00 0.00 38.45 4.30
942 944 4.645863 TTTTTAGGAACACCCCTACTCC 57.354 45.455 0.00 0.00 38.45 3.85
961 963 5.862678 TTGGACGAGGGATTTTTCTTTTT 57.137 34.783 0.00 0.00 0.00 1.94
962 964 5.862678 TTTGGACGAGGGATTTTTCTTTT 57.137 34.783 0.00 0.00 0.00 2.27
963 965 5.862678 TTTTGGACGAGGGATTTTTCTTT 57.137 34.783 0.00 0.00 0.00 2.52
964 966 5.862678 TTTTTGGACGAGGGATTTTTCTT 57.137 34.783 0.00 0.00 0.00 2.52
1022 1024 5.308825 GAGATTTTGAGGAACTGAGGAACA 58.691 41.667 0.00 0.00 41.55 3.18
1023 1025 4.697828 GGAGATTTTGAGGAACTGAGGAAC 59.302 45.833 0.00 0.00 41.55 3.62
1244 1264 3.463690 CGTACACGACGCAACGGG 61.464 66.667 8.76 0.28 46.27 5.28
1583 1615 1.479323 GAGCATGCAACATTGGGACAT 59.521 47.619 21.98 0.00 39.30 3.06
1719 1753 6.613233 TGTTTTATGTAGCAAATACCGTTGG 58.387 36.000 0.00 0.00 33.01 3.77
1775 1971 4.757692 TCCCCTTTGTATTTTGGGTCAAT 58.242 39.130 0.00 0.00 38.03 2.57
1849 2053 6.976088 TCACGCCAGATCAGAAAAATAAAAA 58.024 32.000 0.00 0.00 0.00 1.94
1870 2074 3.563479 ACCCCATGGTTAATCACCTTCAC 60.563 47.826 11.73 0.00 44.75 3.18
1901 2105 2.639347 TCCATCACTTCTTCTTGGAGCA 59.361 45.455 0.00 0.00 32.80 4.26
2189 2393 7.279536 CAGCAATATCTCTAACAATGACTGTGT 59.720 37.037 0.00 0.00 38.67 3.72
2193 2397 6.765036 CCACAGCAATATCTCTAACAATGACT 59.235 38.462 0.00 0.00 0.00 3.41
2266 2470 1.456705 GTCCCAGGCTCTCGGAGAT 60.457 63.158 8.39 0.00 33.89 2.75
2310 2514 3.008049 GGAAGCAGGACTCAAGGTTTAGA 59.992 47.826 0.00 0.00 0.00 2.10
2626 2830 2.777114 ACCCACATACATAGGACATGCA 59.223 45.455 0.00 0.00 0.00 3.96
2932 3137 4.067896 TGAAGAATCAGCCTCTGTTGAAC 58.932 43.478 0.00 0.00 35.22 3.18
3026 3231 0.116541 AGGAACCGAAGAGGAGGGAA 59.883 55.000 0.00 0.00 45.00 3.97
3098 3303 3.858503 GCTTTTTCCAACCTTGCTGCTAG 60.859 47.826 4.04 4.04 0.00 3.42
3099 3304 2.035832 GCTTTTTCCAACCTTGCTGCTA 59.964 45.455 0.00 0.00 0.00 3.49
3100 3305 1.202568 GCTTTTTCCAACCTTGCTGCT 60.203 47.619 0.00 0.00 0.00 4.24
3101 3306 1.220529 GCTTTTTCCAACCTTGCTGC 58.779 50.000 0.00 0.00 0.00 5.25
3102 3307 1.490621 CGCTTTTTCCAACCTTGCTG 58.509 50.000 0.00 0.00 0.00 4.41
3754 3983 2.909006 AGGTGCAGGAAATCTCTTGAGA 59.091 45.455 2.59 2.59 30.22 3.27
4748 4992 6.310956 GCAACACATTTATGAGCTTATGCAAA 59.689 34.615 0.32 0.00 42.74 3.68
4914 5172 2.753452 GTGAGTGTGGCTGCTAGTAGTA 59.247 50.000 9.73 0.00 0.00 1.82
4915 5173 1.546476 GTGAGTGTGGCTGCTAGTAGT 59.454 52.381 9.73 0.00 0.00 2.73
4916 5174 1.546029 TGTGAGTGTGGCTGCTAGTAG 59.454 52.381 3.05 3.05 0.00 2.57
5308 5644 9.846248 CTGAACCTATGAAATTTTCTTTACTGG 57.154 33.333 10.33 6.65 0.00 4.00
5664 6063 7.485913 CCATAATCGAGTCAACAAAAGAAATGG 59.514 37.037 0.00 0.00 0.00 3.16
5992 6416 0.461961 CCGGTCTTCTTCCCTGCTAG 59.538 60.000 0.00 0.00 0.00 3.42
6025 6449 0.033109 TCTCCATCCCTCTGCTCGAA 60.033 55.000 0.00 0.00 0.00 3.71
6107 6531 2.567049 CGTCCTCGCTTCGTCCTT 59.433 61.111 0.00 0.00 0.00 3.36
6290 6723 4.729918 AAGGCAGAGCAAGGCGGG 62.730 66.667 0.00 0.00 36.55 6.13
6531 6972 2.892852 CCAAGGCTTCACCAAATCTGAA 59.107 45.455 0.00 0.00 43.14 3.02
6613 7054 5.276461 TCCGCTGACTGTACATTGATATT 57.724 39.130 0.00 0.00 0.00 1.28
6619 7060 0.898320 AGCTCCGCTGACTGTACATT 59.102 50.000 0.00 0.00 37.57 2.71
6663 7104 2.717639 AGCACCAACAGAAGTTCAGT 57.282 45.000 5.50 0.00 35.28 3.41
6672 7113 2.571212 TCCACAAACTAGCACCAACAG 58.429 47.619 0.00 0.00 0.00 3.16
6752 7193 4.036027 CAGAAATCTGCTCCGCATATTTGT 59.964 41.667 14.28 9.28 42.46 2.83
6762 7203 2.688507 TCACGTTCAGAAATCTGCTCC 58.311 47.619 5.53 0.00 43.46 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.