Multiple sequence alignment - TraesCS3D01G316000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G316000 chr3D 100.000 4714 0 0 1 4714 429594643 429599356 0.000000e+00 8706.0
1 TraesCS3D01G316000 chr3A 93.701 3969 162 28 788 4714 556462608 556458686 0.000000e+00 5864.0
2 TraesCS3D01G316000 chr3A 90.675 311 17 2 495 803 556462994 556462694 2.040000e-108 403.0
3 TraesCS3D01G316000 chr3A 95.652 69 3 0 7 75 556463047 556462979 1.390000e-20 111.0
4 TraesCS3D01G316000 chr3B 93.478 2760 131 20 1991 4714 561538761 561541507 0.000000e+00 4054.0
5 TraesCS3D01G316000 chr3B 94.996 1159 40 7 788 1935 561537613 561538764 0.000000e+00 1803.0
6 TraesCS3D01G316000 chr3B 91.925 161 12 1 537 697 561513569 561513728 1.710000e-54 224.0
7 TraesCS3D01G316000 chr3B 93.684 95 3 3 696 789 561534537 561534629 6.360000e-29 139.0
8 TraesCS3D01G316000 chr6A 87.536 345 37 6 154 496 574284073 574283733 1.230000e-105 394.0
9 TraesCS3D01G316000 chr1A 86.337 344 43 4 154 495 39166961 39166620 5.760000e-99 372.0
10 TraesCS3D01G316000 chr5B 95.808 167 7 0 678 844 421285961 421285795 2.160000e-68 270.0
11 TraesCS3D01G316000 chr5B 79.167 168 27 7 270 431 352672818 352672653 4.990000e-20 110.0
12 TraesCS3D01G316000 chr5B 88.235 68 7 1 1 67 375414001 375414068 3.910000e-11 80.5
13 TraesCS3D01G316000 chr2D 79.299 314 60 5 185 495 407952883 407952572 1.030000e-51 215.0
14 TraesCS3D01G316000 chr7D 92.800 125 8 1 639 762 155285899 155286023 3.750000e-41 180.0
15 TraesCS3D01G316000 chr7D 85.621 153 13 5 495 647 155280259 155280402 8.170000e-33 152.0
16 TraesCS3D01G316000 chr4B 80.435 230 40 5 269 495 595505667 595505894 2.260000e-38 171.0
17 TraesCS3D01G316000 chr4B 88.235 68 7 1 1 67 454390432 454390499 3.910000e-11 80.5
18 TraesCS3D01G316000 chr5A 76.569 239 40 13 199 429 103398743 103398973 2.980000e-22 117.0
19 TraesCS3D01G316000 chr2A 79.874 159 25 7 278 432 175782441 175782596 4.990000e-20 110.0
20 TraesCS3D01G316000 chr1B 79.747 158 26 6 275 429 536111272 536111426 4.990000e-20 110.0
21 TraesCS3D01G316000 chr7B 79.861 144 25 4 276 417 631069516 631069657 8.350000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G316000 chr3D 429594643 429599356 4713 False 8706.000000 8706 100.000000 1 4714 1 chr3D.!!$F1 4713
1 TraesCS3D01G316000 chr3A 556458686 556463047 4361 True 2126.000000 5864 93.342667 7 4714 3 chr3A.!!$R1 4707
2 TraesCS3D01G316000 chr3B 561534537 561541507 6970 False 1998.666667 4054 94.052667 696 4714 3 chr3B.!!$F2 4018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 560 0.030235 ACCGCCAAGAAAAACGCTTC 59.970 50.0 0.00 0.0 0.00 3.86 F
579 580 0.384974 GATCACGTCCTCGCTCGATC 60.385 60.0 0.00 0.0 41.18 3.69 F
623 624 0.458716 CTCCCCTTTCGCTCGTCTTC 60.459 60.0 0.00 0.0 0.00 2.87 F
1437 4436 0.659427 CGGCGCATGATCTGATGTTT 59.341 50.0 10.83 0.0 0.00 2.83 F
2450 5466 0.241749 TTGCCTTTCATTGCAGCGAG 59.758 50.0 0.00 0.0 38.95 5.03 F
3439 6463 1.253100 TTCCCCAACGCTTGATTTCC 58.747 50.0 0.15 0.0 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 4664 0.755686 CTAGAGGGGAGCATGGTCAC 59.244 60.000 25.18 22.3 0.00 3.67 R
1996 5011 1.079543 CACAGCCTCCTCCAGTTCG 60.080 63.158 0.00 0.0 0.00 3.95 R
2450 5466 2.232208 CCTTGAGAATCTGTTTTGGGGC 59.768 50.000 0.00 0.0 34.92 5.80 R
2468 5484 3.975168 ATACGTAGTGTTTGAGCCCTT 57.025 42.857 0.08 0.0 45.73 3.95 R
3593 6617 1.457346 CTGCATCCCAGTCAAACCTC 58.543 55.000 0.00 0.0 36.79 3.85 R
4499 7528 0.322546 GCCGGGTGTTCTTGATCCTT 60.323 55.000 2.18 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.765314 AGCGATCATGGGCTCTAGTTT 59.235 47.619 0.00 0.00 33.32 2.66
40 41 6.180472 TGGGCTCTAGTTTATTTTTCTGGAG 58.820 40.000 0.00 0.00 38.96 3.86
75 76 4.023707 CAGCTCCACGTTTTTCTGAATCTT 60.024 41.667 0.00 0.00 0.00 2.40
76 77 4.580580 AGCTCCACGTTTTTCTGAATCTTT 59.419 37.500 0.00 0.00 0.00 2.52
77 78 4.676924 GCTCCACGTTTTTCTGAATCTTTG 59.323 41.667 0.00 0.00 0.00 2.77
78 79 5.181690 TCCACGTTTTTCTGAATCTTTGG 57.818 39.130 0.00 0.00 0.00 3.28
79 80 3.735746 CCACGTTTTTCTGAATCTTTGGC 59.264 43.478 0.00 0.00 0.00 4.52
80 81 3.421888 CACGTTTTTCTGAATCTTTGGCG 59.578 43.478 0.00 0.00 0.00 5.69
81 82 2.979813 CGTTTTTCTGAATCTTTGGCGG 59.020 45.455 0.00 0.00 0.00 6.13
82 83 3.550030 CGTTTTTCTGAATCTTTGGCGGT 60.550 43.478 0.00 0.00 0.00 5.68
83 84 4.319911 CGTTTTTCTGAATCTTTGGCGGTA 60.320 41.667 0.00 0.00 0.00 4.02
84 85 4.759516 TTTTCTGAATCTTTGGCGGTAC 57.240 40.909 0.00 0.00 0.00 3.34
97 98 4.808649 GGTACGTGAGGCACTAGC 57.191 61.111 0.00 0.00 41.55 3.42
98 99 1.888018 GGTACGTGAGGCACTAGCA 59.112 57.895 0.00 0.00 41.55 3.49
99 100 0.245539 GGTACGTGAGGCACTAGCAA 59.754 55.000 0.00 0.00 41.55 3.91
100 101 1.134788 GGTACGTGAGGCACTAGCAAT 60.135 52.381 0.00 0.00 41.55 3.56
101 102 2.618053 GTACGTGAGGCACTAGCAATT 58.382 47.619 0.00 0.00 41.55 2.32
102 103 1.442769 ACGTGAGGCACTAGCAATTG 58.557 50.000 0.00 0.00 41.55 2.32
103 104 0.097674 CGTGAGGCACTAGCAATTGC 59.902 55.000 23.05 23.05 41.55 3.56
104 105 0.097674 GTGAGGCACTAGCAATTGCG 59.902 55.000 24.02 13.76 43.71 4.85
105 106 1.026182 TGAGGCACTAGCAATTGCGG 61.026 55.000 24.02 21.49 43.71 5.69
106 107 0.744414 GAGGCACTAGCAATTGCGGA 60.744 55.000 24.02 15.31 43.71 5.54
107 108 2.668085 GAGGCACTAGCAATTGCGGAG 61.668 57.143 24.02 24.66 43.71 4.63
109 110 5.843684 GAGGCACTAGCAATTGCGGAGTA 62.844 52.174 29.14 15.81 43.71 2.59
116 117 3.070429 GCAATTGCGGAGTATTTCTGG 57.930 47.619 15.87 0.00 32.45 3.86
117 118 2.223572 GCAATTGCGGAGTATTTCTGGG 60.224 50.000 15.87 0.00 32.45 4.45
118 119 3.016736 CAATTGCGGAGTATTTCTGGGT 58.983 45.455 0.00 0.00 32.45 4.51
119 120 2.107950 TTGCGGAGTATTTCTGGGTG 57.892 50.000 0.00 0.00 32.45 4.61
120 121 0.392461 TGCGGAGTATTTCTGGGTGC 60.392 55.000 0.00 0.00 32.45 5.01
121 122 0.392461 GCGGAGTATTTCTGGGTGCA 60.392 55.000 0.00 0.00 32.45 4.57
122 123 1.747206 GCGGAGTATTTCTGGGTGCAT 60.747 52.381 0.00 0.00 32.45 3.96
123 124 2.213499 CGGAGTATTTCTGGGTGCATC 58.787 52.381 0.00 0.00 0.00 3.91
124 125 2.213499 GGAGTATTTCTGGGTGCATCG 58.787 52.381 0.00 0.00 0.00 3.84
125 126 2.213499 GAGTATTTCTGGGTGCATCGG 58.787 52.381 0.00 0.00 0.00 4.18
126 127 0.663153 GTATTTCTGGGTGCATCGGC 59.337 55.000 0.00 0.00 41.68 5.54
138 139 2.634982 GCATCGGCAATCACTTTCAA 57.365 45.000 0.00 0.00 40.72 2.69
139 140 2.945278 GCATCGGCAATCACTTTCAAA 58.055 42.857 0.00 0.00 40.72 2.69
140 141 3.514645 GCATCGGCAATCACTTTCAAAT 58.485 40.909 0.00 0.00 40.72 2.32
141 142 4.671377 GCATCGGCAATCACTTTCAAATA 58.329 39.130 0.00 0.00 40.72 1.40
142 143 5.284079 GCATCGGCAATCACTTTCAAATAT 58.716 37.500 0.00 0.00 40.72 1.28
143 144 6.437928 GCATCGGCAATCACTTTCAAATATA 58.562 36.000 0.00 0.00 40.72 0.86
144 145 7.086376 GCATCGGCAATCACTTTCAAATATAT 58.914 34.615 0.00 0.00 40.72 0.86
145 146 7.596248 GCATCGGCAATCACTTTCAAATATATT 59.404 33.333 0.00 0.00 40.72 1.28
146 147 9.121517 CATCGGCAATCACTTTCAAATATATTC 57.878 33.333 0.00 0.00 0.00 1.75
147 148 8.219546 TCGGCAATCACTTTCAAATATATTCA 57.780 30.769 0.00 0.00 0.00 2.57
148 149 8.849168 TCGGCAATCACTTTCAAATATATTCAT 58.151 29.630 0.00 0.00 0.00 2.57
161 162 8.783093 TCAAATATATTCATAACTCTTTGGCGG 58.217 33.333 0.00 0.00 0.00 6.13
162 163 8.567948 CAAATATATTCATAACTCTTTGGCGGT 58.432 33.333 0.00 0.00 0.00 5.68
163 164 9.787435 AAATATATTCATAACTCTTTGGCGGTA 57.213 29.630 0.00 0.00 0.00 4.02
164 165 8.773404 ATATATTCATAACTCTTTGGCGGTAC 57.227 34.615 0.00 0.00 0.00 3.34
165 166 3.965379 TCATAACTCTTTGGCGGTACA 57.035 42.857 0.00 0.00 0.00 2.90
166 167 4.481368 TCATAACTCTTTGGCGGTACAT 57.519 40.909 0.00 0.00 0.00 2.29
167 168 4.188462 TCATAACTCTTTGGCGGTACATG 58.812 43.478 0.00 0.00 0.00 3.21
168 169 2.851263 AACTCTTTGGCGGTACATGA 57.149 45.000 0.00 0.00 0.00 3.07
169 170 2.386661 ACTCTTTGGCGGTACATGAG 57.613 50.000 0.00 0.00 0.00 2.90
170 171 1.066143 ACTCTTTGGCGGTACATGAGG 60.066 52.381 0.00 0.00 0.00 3.86
171 172 0.981183 TCTTTGGCGGTACATGAGGT 59.019 50.000 0.00 0.00 0.00 3.85
172 173 1.086696 CTTTGGCGGTACATGAGGTG 58.913 55.000 0.00 0.00 0.00 4.00
173 174 0.958382 TTTGGCGGTACATGAGGTGC 60.958 55.000 0.00 0.00 0.00 5.01
174 175 1.836999 TTGGCGGTACATGAGGTGCT 61.837 55.000 0.00 0.00 32.05 4.40
175 176 0.973496 TGGCGGTACATGAGGTGCTA 60.973 55.000 0.00 0.00 32.05 3.49
176 177 0.249489 GGCGGTACATGAGGTGCTAG 60.249 60.000 0.00 0.00 32.05 3.42
177 178 0.876342 GCGGTACATGAGGTGCTAGC 60.876 60.000 8.10 8.10 32.05 3.42
178 179 0.459899 CGGTACATGAGGTGCTAGCA 59.540 55.000 14.93 14.93 32.05 3.49
179 180 1.134818 CGGTACATGAGGTGCTAGCAA 60.135 52.381 21.29 3.68 32.05 3.91
180 181 2.483714 CGGTACATGAGGTGCTAGCAAT 60.484 50.000 21.29 11.56 32.05 3.56
181 182 3.545703 GGTACATGAGGTGCTAGCAATT 58.454 45.455 21.29 10.71 32.05 2.32
182 183 3.313526 GGTACATGAGGTGCTAGCAATTG 59.686 47.826 21.29 14.37 32.05 2.32
183 184 1.747355 ACATGAGGTGCTAGCAATTGC 59.253 47.619 21.29 23.05 42.49 3.56
200 201 6.908825 GCAATTGCGGAGGATTATATTTACA 58.091 36.000 15.87 0.00 0.00 2.41
201 202 7.367285 GCAATTGCGGAGGATTATATTTACAA 58.633 34.615 15.87 0.00 0.00 2.41
202 203 7.865385 GCAATTGCGGAGGATTATATTTACAAA 59.135 33.333 15.87 0.00 0.00 2.83
203 204 9.743057 CAATTGCGGAGGATTATATTTACAAAA 57.257 29.630 0.00 0.00 0.00 2.44
225 226 5.529014 AAATTAATGTGGCGTTTGATTGC 57.471 34.783 0.00 0.00 0.00 3.56
226 227 3.650070 TTAATGTGGCGTTTGATTGCA 57.350 38.095 0.00 0.00 0.00 4.08
227 228 2.522836 AATGTGGCGTTTGATTGCAA 57.477 40.000 0.00 0.00 0.00 4.08
228 229 2.068837 ATGTGGCGTTTGATTGCAAG 57.931 45.000 4.94 0.00 35.04 4.01
229 230 1.028130 TGTGGCGTTTGATTGCAAGA 58.972 45.000 4.94 0.00 35.04 3.02
230 231 1.406898 TGTGGCGTTTGATTGCAAGAA 59.593 42.857 4.94 0.00 35.04 2.52
231 232 2.053627 GTGGCGTTTGATTGCAAGAAG 58.946 47.619 4.94 0.00 35.04 2.85
232 233 1.952990 TGGCGTTTGATTGCAAGAAGA 59.047 42.857 4.94 0.00 35.04 2.87
233 234 2.557924 TGGCGTTTGATTGCAAGAAGAT 59.442 40.909 4.94 0.00 35.04 2.40
234 235 3.005684 TGGCGTTTGATTGCAAGAAGATT 59.994 39.130 4.94 0.00 35.04 2.40
235 236 3.365820 GGCGTTTGATTGCAAGAAGATTG 59.634 43.478 4.94 0.00 35.04 2.67
236 237 3.983344 GCGTTTGATTGCAAGAAGATTGT 59.017 39.130 4.94 0.00 35.04 2.71
237 238 4.143473 GCGTTTGATTGCAAGAAGATTGTG 60.143 41.667 4.94 0.00 35.04 3.33
238 239 4.383649 CGTTTGATTGCAAGAAGATTGTGG 59.616 41.667 4.94 0.00 35.04 4.17
239 240 5.531634 GTTTGATTGCAAGAAGATTGTGGA 58.468 37.500 4.94 0.00 35.04 4.02
240 241 5.988310 TTGATTGCAAGAAGATTGTGGAT 57.012 34.783 4.94 0.00 0.00 3.41
241 242 5.988310 TGATTGCAAGAAGATTGTGGATT 57.012 34.783 4.94 0.00 0.00 3.01
242 243 7.465353 TTGATTGCAAGAAGATTGTGGATTA 57.535 32.000 4.94 0.00 0.00 1.75
243 244 7.649533 TGATTGCAAGAAGATTGTGGATTAT 57.350 32.000 4.94 0.00 0.00 1.28
244 245 8.750515 TGATTGCAAGAAGATTGTGGATTATA 57.249 30.769 4.94 0.00 0.00 0.98
245 246 9.358406 TGATTGCAAGAAGATTGTGGATTATAT 57.642 29.630 4.94 0.00 0.00 0.86
246 247 9.837525 GATTGCAAGAAGATTGTGGATTATATC 57.162 33.333 4.94 0.00 0.00 1.63
247 248 8.750515 TTGCAAGAAGATTGTGGATTATATCA 57.249 30.769 0.00 0.00 0.00 2.15
248 249 8.750515 TGCAAGAAGATTGTGGATTATATCAA 57.249 30.769 0.00 0.00 0.00 2.57
249 250 8.843262 TGCAAGAAGATTGTGGATTATATCAAG 58.157 33.333 0.00 0.00 0.00 3.02
250 251 7.806960 GCAAGAAGATTGTGGATTATATCAAGC 59.193 37.037 0.00 0.00 0.00 4.01
251 252 7.664082 AGAAGATTGTGGATTATATCAAGCG 57.336 36.000 0.00 0.00 32.57 4.68
252 253 6.652481 AGAAGATTGTGGATTATATCAAGCGG 59.348 38.462 0.00 0.00 32.57 5.52
253 254 5.248640 AGATTGTGGATTATATCAAGCGGG 58.751 41.667 0.00 0.00 32.57 6.13
254 255 3.417069 TGTGGATTATATCAAGCGGGG 57.583 47.619 0.00 0.00 0.00 5.73
255 256 2.976185 TGTGGATTATATCAAGCGGGGA 59.024 45.455 0.00 0.00 0.00 4.81
256 257 3.587061 TGTGGATTATATCAAGCGGGGAT 59.413 43.478 0.00 0.00 0.00 3.85
257 258 4.192317 GTGGATTATATCAAGCGGGGATC 58.808 47.826 0.00 0.00 0.00 3.36
258 259 3.843619 TGGATTATATCAAGCGGGGATCA 59.156 43.478 0.00 0.00 0.00 2.92
259 260 4.474651 TGGATTATATCAAGCGGGGATCAT 59.525 41.667 0.00 0.00 0.00 2.45
260 261 5.059833 GGATTATATCAAGCGGGGATCATC 58.940 45.833 0.00 0.00 0.00 2.92
261 262 2.680312 ATATCAAGCGGGGATCATCG 57.320 50.000 0.00 0.00 0.00 3.84
262 263 0.608130 TATCAAGCGGGGATCATCGG 59.392 55.000 8.61 0.06 0.00 4.18
263 264 2.738213 ATCAAGCGGGGATCATCGGC 62.738 60.000 8.61 8.78 0.00 5.54
264 265 4.609018 AAGCGGGGATCATCGGCG 62.609 66.667 0.00 0.00 35.92 6.46
267 268 4.363990 CGGGGATCATCGGCGGAG 62.364 72.222 7.21 0.00 0.00 4.63
291 292 7.966157 GCATGCAGCTATTATACATGAAATC 57.034 36.000 14.21 0.00 40.39 2.17
292 293 7.532571 GCATGCAGCTATTATACATGAAATCA 58.467 34.615 14.21 0.00 40.39 2.57
293 294 8.188799 GCATGCAGCTATTATACATGAAATCAT 58.811 33.333 14.21 0.00 40.39 2.45
296 297 9.387257 TGCAGCTATTATACATGAAATCATAGG 57.613 33.333 0.00 0.00 34.26 2.57
297 298 9.388506 GCAGCTATTATACATGAAATCATAGGT 57.611 33.333 0.00 6.35 34.26 3.08
299 300 9.809096 AGCTATTATACATGAAATCATAGGTCG 57.191 33.333 0.00 0.00 34.26 4.79
300 301 9.587772 GCTATTATACATGAAATCATAGGTCGT 57.412 33.333 0.00 0.00 34.26 4.34
303 304 8.515473 TTATACATGAAATCATAGGTCGTTCG 57.485 34.615 0.00 0.00 34.26 3.95
304 305 3.555956 ACATGAAATCATAGGTCGTTCGC 59.444 43.478 0.00 0.00 34.26 4.70
305 306 2.190161 TGAAATCATAGGTCGTTCGCG 58.810 47.619 0.00 0.00 42.98 5.87
306 307 2.190981 GAAATCATAGGTCGTTCGCGT 58.809 47.619 5.77 0.00 42.11 6.01
307 308 1.836383 AATCATAGGTCGTTCGCGTC 58.164 50.000 5.77 0.00 42.11 5.19
308 309 1.022735 ATCATAGGTCGTTCGCGTCT 58.977 50.000 5.77 0.00 42.11 4.18
309 310 0.806868 TCATAGGTCGTTCGCGTCTT 59.193 50.000 5.77 0.00 42.11 3.01
310 311 1.200716 TCATAGGTCGTTCGCGTCTTT 59.799 47.619 5.77 0.00 42.11 2.52
311 312 1.990563 CATAGGTCGTTCGCGTCTTTT 59.009 47.619 5.77 0.00 42.11 2.27
312 313 2.138596 TAGGTCGTTCGCGTCTTTTT 57.861 45.000 5.77 0.00 42.11 1.94
313 314 2.138596 AGGTCGTTCGCGTCTTTTTA 57.861 45.000 5.77 0.00 42.11 1.52
314 315 2.680577 AGGTCGTTCGCGTCTTTTTAT 58.319 42.857 5.77 0.00 42.11 1.40
315 316 2.665052 AGGTCGTTCGCGTCTTTTTATC 59.335 45.455 5.77 0.00 42.11 1.75
316 317 2.531610 GGTCGTTCGCGTCTTTTTATCG 60.532 50.000 5.77 0.00 42.11 2.92
317 318 1.058129 TCGTTCGCGTCTTTTTATCGC 59.942 47.619 5.77 0.00 45.28 4.58
318 319 1.058695 CGTTCGCGTCTTTTTATCGCT 59.941 47.619 5.77 0.00 46.31 4.93
319 320 2.471749 CGTTCGCGTCTTTTTATCGCTT 60.472 45.455 5.77 0.00 46.31 4.68
320 321 2.780361 TCGCGTCTTTTTATCGCTTG 57.220 45.000 5.77 0.00 46.31 4.01
321 322 2.063266 TCGCGTCTTTTTATCGCTTGT 58.937 42.857 5.77 0.00 46.31 3.16
322 323 3.244156 TCGCGTCTTTTTATCGCTTGTA 58.756 40.909 5.77 0.00 46.31 2.41
323 324 3.674281 TCGCGTCTTTTTATCGCTTGTAA 59.326 39.130 5.77 0.00 46.31 2.41
324 325 3.772010 CGCGTCTTTTTATCGCTTGTAAC 59.228 43.478 0.00 0.00 46.31 2.50
325 326 4.664640 CGCGTCTTTTTATCGCTTGTAACA 60.665 41.667 0.00 0.00 46.31 2.41
326 327 5.321516 GCGTCTTTTTATCGCTTGTAACAT 58.678 37.500 0.00 0.00 45.29 2.71
327 328 5.793457 GCGTCTTTTTATCGCTTGTAACATT 59.207 36.000 0.00 0.00 45.29 2.71
328 329 6.957077 GCGTCTTTTTATCGCTTGTAACATTA 59.043 34.615 0.00 0.00 45.29 1.90
329 330 7.638683 GCGTCTTTTTATCGCTTGTAACATTAT 59.361 33.333 0.00 0.00 45.29 1.28
330 331 9.144085 CGTCTTTTTATCGCTTGTAACATTATC 57.856 33.333 0.00 0.00 0.00 1.75
331 332 9.434559 GTCTTTTTATCGCTTGTAACATTATCC 57.565 33.333 0.00 0.00 0.00 2.59
332 333 9.168451 TCTTTTTATCGCTTGTAACATTATCCA 57.832 29.630 0.00 0.00 0.00 3.41
333 334 9.950680 CTTTTTATCGCTTGTAACATTATCCAT 57.049 29.630 0.00 0.00 0.00 3.41
334 335 9.729023 TTTTTATCGCTTGTAACATTATCCATG 57.271 29.630 0.00 0.00 39.07 3.66
335 336 8.669946 TTTATCGCTTGTAACATTATCCATGA 57.330 30.769 0.00 0.00 36.24 3.07
336 337 6.791887 ATCGCTTGTAACATTATCCATGAG 57.208 37.500 0.00 0.00 36.24 2.90
337 338 5.670485 TCGCTTGTAACATTATCCATGAGT 58.330 37.500 0.00 0.00 36.24 3.41
338 339 6.112734 TCGCTTGTAACATTATCCATGAGTT 58.887 36.000 0.00 0.00 36.24 3.01
339 340 6.597672 TCGCTTGTAACATTATCCATGAGTTT 59.402 34.615 0.00 0.00 36.24 2.66
340 341 7.766738 TCGCTTGTAACATTATCCATGAGTTTA 59.233 33.333 0.00 0.00 36.24 2.01
341 342 8.064222 CGCTTGTAACATTATCCATGAGTTTAG 58.936 37.037 0.00 0.00 36.24 1.85
342 343 8.345565 GCTTGTAACATTATCCATGAGTTTAGG 58.654 37.037 0.00 0.00 36.24 2.69
343 344 9.613428 CTTGTAACATTATCCATGAGTTTAGGA 57.387 33.333 0.00 0.00 36.24 2.94
344 345 9.613428 TTGTAACATTATCCATGAGTTTAGGAG 57.387 33.333 0.00 0.00 36.24 3.69
345 346 7.715249 TGTAACATTATCCATGAGTTTAGGAGC 59.285 37.037 0.00 0.00 36.24 4.70
346 347 6.506538 ACATTATCCATGAGTTTAGGAGCT 57.493 37.500 0.00 0.00 36.24 4.09
347 348 6.529220 ACATTATCCATGAGTTTAGGAGCTC 58.471 40.000 4.71 4.71 36.24 4.09
348 349 3.742433 ATCCATGAGTTTAGGAGCTCG 57.258 47.619 7.83 0.00 36.04 5.03
349 350 2.735151 TCCATGAGTTTAGGAGCTCGA 58.265 47.619 7.83 0.00 36.04 4.04
350 351 3.096852 TCCATGAGTTTAGGAGCTCGAA 58.903 45.455 7.83 1.24 36.04 3.71
351 352 3.706594 TCCATGAGTTTAGGAGCTCGAAT 59.293 43.478 7.83 0.00 36.04 3.34
352 353 4.162320 TCCATGAGTTTAGGAGCTCGAATT 59.838 41.667 7.83 0.00 36.04 2.17
353 354 4.878397 CCATGAGTTTAGGAGCTCGAATTT 59.122 41.667 7.83 0.00 36.04 1.82
354 355 5.007136 CCATGAGTTTAGGAGCTCGAATTTC 59.993 44.000 7.83 6.09 36.04 2.17
355 356 4.174009 TGAGTTTAGGAGCTCGAATTTCG 58.826 43.478 12.54 12.54 42.10 3.46
365 366 1.710013 TCGAATTTCGAGCCTCACAC 58.290 50.000 17.08 0.00 44.82 3.82
366 367 1.272490 TCGAATTTCGAGCCTCACACT 59.728 47.619 17.08 0.00 44.82 3.55
367 368 1.656095 CGAATTTCGAGCCTCACACTC 59.344 52.381 13.45 0.00 43.74 3.51
368 369 2.672478 CGAATTTCGAGCCTCACACTCT 60.672 50.000 13.45 0.00 43.74 3.24
369 370 2.663826 ATTTCGAGCCTCACACTCTC 57.336 50.000 0.00 0.00 31.71 3.20
371 372 2.201436 TTCGAGCCTCACACTCTCGC 62.201 60.000 6.06 0.00 46.44 5.03
372 373 2.695759 CGAGCCTCACACTCTCGCT 61.696 63.158 0.00 0.00 42.28 4.93
373 374 1.369839 CGAGCCTCACACTCTCGCTA 61.370 60.000 0.00 0.00 42.28 4.26
374 375 0.380378 GAGCCTCACACTCTCGCTAG 59.620 60.000 0.00 0.00 0.00 3.42
375 376 1.034838 AGCCTCACACTCTCGCTAGG 61.035 60.000 0.00 0.00 0.00 3.02
376 377 1.435515 CCTCACACTCTCGCTAGGC 59.564 63.158 0.00 0.00 0.00 3.93
377 378 1.315981 CCTCACACTCTCGCTAGGCA 61.316 60.000 0.00 0.00 0.00 4.75
378 379 0.743688 CTCACACTCTCGCTAGGCAT 59.256 55.000 0.00 0.00 0.00 4.40
379 380 0.457443 TCACACTCTCGCTAGGCATG 59.543 55.000 0.00 0.00 0.00 4.06
380 381 1.142748 ACACTCTCGCTAGGCATGC 59.857 57.895 9.90 9.90 0.00 4.06
381 382 1.326213 ACACTCTCGCTAGGCATGCT 61.326 55.000 18.92 6.26 0.00 3.79
382 383 0.597118 CACTCTCGCTAGGCATGCTC 60.597 60.000 18.92 7.89 0.00 4.26
383 384 0.754957 ACTCTCGCTAGGCATGCTCT 60.755 55.000 18.92 15.14 0.00 4.09
384 385 0.388659 CTCTCGCTAGGCATGCTCTT 59.611 55.000 18.92 6.39 0.00 2.85
385 386 0.826715 TCTCGCTAGGCATGCTCTTT 59.173 50.000 18.92 3.79 0.00 2.52
386 387 1.202463 TCTCGCTAGGCATGCTCTTTC 60.202 52.381 18.92 0.00 0.00 2.62
387 388 0.536724 TCGCTAGGCATGCTCTTTCA 59.463 50.000 18.92 0.00 0.00 2.69
388 389 0.654683 CGCTAGGCATGCTCTTTCAC 59.345 55.000 18.92 0.00 0.00 3.18
389 390 1.741732 CGCTAGGCATGCTCTTTCACT 60.742 52.381 18.92 6.63 0.00 3.41
390 391 2.363683 GCTAGGCATGCTCTTTCACTT 58.636 47.619 18.92 0.00 0.00 3.16
391 392 2.097142 GCTAGGCATGCTCTTTCACTTG 59.903 50.000 18.92 6.32 0.00 3.16
392 393 1.542492 AGGCATGCTCTTTCACTTGG 58.458 50.000 18.92 0.00 0.00 3.61
393 394 0.529378 GGCATGCTCTTTCACTTGGG 59.471 55.000 18.92 0.00 0.00 4.12
394 395 0.108945 GCATGCTCTTTCACTTGGGC 60.109 55.000 11.37 0.00 0.00 5.36
395 396 1.542492 CATGCTCTTTCACTTGGGCT 58.458 50.000 0.00 0.00 0.00 5.19
396 397 1.471684 CATGCTCTTTCACTTGGGCTC 59.528 52.381 0.00 0.00 0.00 4.70
397 398 0.603707 TGCTCTTTCACTTGGGCTCG 60.604 55.000 0.00 0.00 0.00 5.03
398 399 1.301677 GCTCTTTCACTTGGGCTCGG 61.302 60.000 0.00 0.00 0.00 4.63
399 400 0.035458 CTCTTTCACTTGGGCTCGGT 59.965 55.000 0.00 0.00 0.00 4.69
400 401 0.034896 TCTTTCACTTGGGCTCGGTC 59.965 55.000 0.00 0.00 0.00 4.79
401 402 1.291877 CTTTCACTTGGGCTCGGTCG 61.292 60.000 0.00 0.00 0.00 4.79
402 403 3.876589 TTCACTTGGGCTCGGTCGC 62.877 63.158 0.00 0.00 0.00 5.19
410 411 2.480555 GCTCGGTCGCCATGTTTG 59.519 61.111 0.00 0.00 0.00 2.93
411 412 3.039202 GCTCGGTCGCCATGTTTGG 62.039 63.158 0.00 0.00 46.66 3.28
412 413 1.671054 CTCGGTCGCCATGTTTGGT 60.671 57.895 0.00 0.00 45.57 3.67
413 414 1.228003 TCGGTCGCCATGTTTGGTT 60.228 52.632 0.00 0.00 45.57 3.67
414 415 0.035036 TCGGTCGCCATGTTTGGTTA 59.965 50.000 0.00 0.00 45.57 2.85
415 416 0.446222 CGGTCGCCATGTTTGGTTAG 59.554 55.000 0.00 0.00 45.57 2.34
416 417 0.808755 GGTCGCCATGTTTGGTTAGG 59.191 55.000 0.00 0.00 45.57 2.69
417 418 1.612199 GGTCGCCATGTTTGGTTAGGA 60.612 52.381 0.00 0.00 45.57 2.94
418 419 1.467342 GTCGCCATGTTTGGTTAGGAC 59.533 52.381 0.00 0.00 45.57 3.85
419 420 1.072489 TCGCCATGTTTGGTTAGGACA 59.928 47.619 0.00 0.00 45.57 4.02
420 421 1.883275 CGCCATGTTTGGTTAGGACAA 59.117 47.619 0.00 0.00 45.57 3.18
421 422 2.351350 CGCCATGTTTGGTTAGGACAAC 60.351 50.000 0.00 0.00 45.57 3.32
422 423 2.029380 GCCATGTTTGGTTAGGACAACC 60.029 50.000 0.00 0.00 45.57 3.77
423 424 2.560981 CCATGTTTGGTTAGGACAACCC 59.439 50.000 3.82 0.00 39.54 4.11
424 425 1.970092 TGTTTGGTTAGGACAACCCG 58.030 50.000 3.82 0.00 39.54 5.28
425 426 1.489649 TGTTTGGTTAGGACAACCCGA 59.510 47.619 3.82 0.00 39.54 5.14
426 427 2.092538 TGTTTGGTTAGGACAACCCGAA 60.093 45.455 3.82 0.00 39.54 4.30
427 428 2.950975 GTTTGGTTAGGACAACCCGAAA 59.049 45.455 3.82 0.00 39.54 3.46
428 429 3.294038 TTGGTTAGGACAACCCGAAAA 57.706 42.857 3.82 0.00 39.54 2.29
429 430 3.512219 TGGTTAGGACAACCCGAAAAT 57.488 42.857 3.82 0.00 39.54 1.82
430 431 3.834938 TGGTTAGGACAACCCGAAAATT 58.165 40.909 3.82 0.00 39.54 1.82
431 432 4.216708 TGGTTAGGACAACCCGAAAATTT 58.783 39.130 3.82 0.00 39.54 1.82
432 433 4.038162 TGGTTAGGACAACCCGAAAATTTG 59.962 41.667 3.82 0.00 39.54 2.32
433 434 4.278919 GGTTAGGACAACCCGAAAATTTGA 59.721 41.667 0.00 0.00 40.87 2.69
434 435 5.221283 GGTTAGGACAACCCGAAAATTTGAA 60.221 40.000 0.00 0.00 40.87 2.69
435 436 6.452242 GTTAGGACAACCCGAAAATTTGAAT 58.548 36.000 0.00 0.00 40.87 2.57
436 437 5.545063 AGGACAACCCGAAAATTTGAATT 57.455 34.783 0.00 0.00 40.87 2.17
437 438 5.924356 AGGACAACCCGAAAATTTGAATTT 58.076 33.333 0.00 0.00 38.99 1.82
438 439 6.353323 AGGACAACCCGAAAATTTGAATTTT 58.647 32.000 12.78 12.78 42.51 1.82
439 440 7.501844 AGGACAACCCGAAAATTTGAATTTTA 58.498 30.769 12.87 0.00 41.87 1.52
440 441 8.154203 AGGACAACCCGAAAATTTGAATTTTAT 58.846 29.630 12.87 0.00 41.87 1.40
441 442 8.440059 GGACAACCCGAAAATTTGAATTTTATC 58.560 33.333 12.87 3.52 45.70 1.75
442 443 8.317891 ACAACCCGAAAATTTGAATTTTATCC 57.682 30.769 12.87 2.92 45.70 2.59
443 444 7.934120 ACAACCCGAAAATTTGAATTTTATCCA 59.066 29.630 12.87 0.00 45.70 3.41
444 445 8.945057 CAACCCGAAAATTTGAATTTTATCCAT 58.055 29.630 12.87 0.83 45.70 3.41
445 446 8.491331 ACCCGAAAATTTGAATTTTATCCATG 57.509 30.769 12.87 0.00 45.70 3.66
446 447 8.100164 ACCCGAAAATTTGAATTTTATCCATGT 58.900 29.630 12.87 4.69 45.70 3.21
447 448 9.593134 CCCGAAAATTTGAATTTTATCCATGTA 57.407 29.630 12.87 0.00 45.70 2.29
455 456 9.730705 TTTGAATTTTATCCATGTAAAATGCCA 57.269 25.926 12.35 11.01 41.16 4.92
456 457 9.902684 TTGAATTTTATCCATGTAAAATGCCAT 57.097 25.926 12.35 1.16 41.16 4.40
461 462 9.814899 TTTTATCCATGTAAAATGCCATAACAG 57.185 29.630 0.00 0.00 30.76 3.16
462 463 8.532186 TTATCCATGTAAAATGCCATAACAGT 57.468 30.769 0.00 0.00 0.00 3.55
463 464 6.849085 TCCATGTAAAATGCCATAACAGTT 57.151 33.333 0.00 0.00 0.00 3.16
464 465 7.238486 TCCATGTAAAATGCCATAACAGTTT 57.762 32.000 0.00 0.00 40.56 2.66
465 466 7.095910 TCCATGTAAAATGCCATAACAGTTTG 58.904 34.615 0.00 0.00 38.22 2.93
466 467 7.039434 TCCATGTAAAATGCCATAACAGTTTGA 60.039 33.333 0.00 0.00 38.22 2.69
467 468 7.601886 CCATGTAAAATGCCATAACAGTTTGAA 59.398 33.333 0.00 0.00 38.22 2.69
468 469 9.153721 CATGTAAAATGCCATAACAGTTTGAAT 57.846 29.630 0.00 0.00 38.22 2.57
472 473 7.832503 AAATGCCATAACAGTTTGAATAAGC 57.167 32.000 0.00 0.00 0.00 3.09
473 474 5.323371 TGCCATAACAGTTTGAATAAGCC 57.677 39.130 0.00 0.00 0.00 4.35
474 475 5.016173 TGCCATAACAGTTTGAATAAGCCT 58.984 37.500 0.00 0.00 0.00 4.58
475 476 5.105797 TGCCATAACAGTTTGAATAAGCCTG 60.106 40.000 0.00 0.00 0.00 4.85
476 477 5.679638 GCCATAACAGTTTGAATAAGCCTGG 60.680 44.000 0.00 0.00 0.00 4.45
477 478 3.942130 AACAGTTTGAATAAGCCTGGC 57.058 42.857 11.65 11.65 0.00 4.85
478 479 1.812571 ACAGTTTGAATAAGCCTGGCG 59.187 47.619 13.96 0.00 0.00 5.69
479 480 2.083774 CAGTTTGAATAAGCCTGGCGA 58.916 47.619 13.96 5.86 0.00 5.54
480 481 2.096496 CAGTTTGAATAAGCCTGGCGAG 59.904 50.000 13.96 0.00 0.00 5.03
481 482 2.027192 AGTTTGAATAAGCCTGGCGAGA 60.027 45.455 13.96 2.60 0.00 4.04
482 483 2.747446 GTTTGAATAAGCCTGGCGAGAA 59.253 45.455 13.96 0.10 0.00 2.87
483 484 3.281727 TTGAATAAGCCTGGCGAGAAT 57.718 42.857 13.96 2.70 0.00 2.40
484 485 2.564771 TGAATAAGCCTGGCGAGAATG 58.435 47.619 13.96 0.00 0.00 2.67
485 486 2.092968 TGAATAAGCCTGGCGAGAATGT 60.093 45.455 13.96 0.00 0.00 2.71
486 487 2.246719 ATAAGCCTGGCGAGAATGTC 57.753 50.000 13.96 0.00 0.00 3.06
487 488 1.195115 TAAGCCTGGCGAGAATGTCT 58.805 50.000 13.96 0.00 0.00 3.41
488 489 1.195115 AAGCCTGGCGAGAATGTCTA 58.805 50.000 13.96 0.00 0.00 2.59
489 490 0.749649 AGCCTGGCGAGAATGTCTAG 59.250 55.000 13.96 0.00 0.00 2.43
490 491 0.747255 GCCTGGCGAGAATGTCTAGA 59.253 55.000 1.35 0.00 0.00 2.43
491 492 1.137086 GCCTGGCGAGAATGTCTAGAA 59.863 52.381 1.35 0.00 0.00 2.10
492 493 2.418746 GCCTGGCGAGAATGTCTAGAAA 60.419 50.000 1.35 0.00 0.00 2.52
493 494 3.861840 CCTGGCGAGAATGTCTAGAAAA 58.138 45.455 0.00 0.00 0.00 2.29
494 495 4.253685 CCTGGCGAGAATGTCTAGAAAAA 58.746 43.478 0.00 0.00 0.00 1.94
495 496 4.093556 CCTGGCGAGAATGTCTAGAAAAAC 59.906 45.833 0.00 0.00 0.00 2.43
496 497 3.678072 TGGCGAGAATGTCTAGAAAAACG 59.322 43.478 0.00 0.00 0.00 3.60
497 498 3.678548 GGCGAGAATGTCTAGAAAAACGT 59.321 43.478 0.00 0.00 0.00 3.99
498 499 4.151867 GGCGAGAATGTCTAGAAAAACGTT 59.848 41.667 0.00 0.00 0.00 3.99
499 500 5.333875 GGCGAGAATGTCTAGAAAAACGTTT 60.334 40.000 7.96 7.96 0.00 3.60
500 501 6.134061 GCGAGAATGTCTAGAAAAACGTTTT 58.866 36.000 20.26 20.26 0.00 2.43
501 502 6.631636 GCGAGAATGTCTAGAAAAACGTTTTT 59.368 34.615 32.90 32.90 42.60 1.94
559 560 0.030235 ACCGCCAAGAAAAACGCTTC 59.970 50.000 0.00 0.00 0.00 3.86
574 575 1.429825 CTTCGATCACGTCCTCGCT 59.570 57.895 10.60 0.00 41.18 4.93
575 576 0.590230 CTTCGATCACGTCCTCGCTC 60.590 60.000 10.60 0.00 41.18 5.03
576 577 2.305826 TTCGATCACGTCCTCGCTCG 62.306 60.000 10.60 1.62 41.18 5.03
577 578 2.810012 CGATCACGTCCTCGCTCGA 61.810 63.158 3.62 0.00 41.18 4.04
578 579 1.649815 GATCACGTCCTCGCTCGAT 59.350 57.895 0.00 0.00 41.18 3.59
579 580 0.384974 GATCACGTCCTCGCTCGATC 60.385 60.000 0.00 0.00 41.18 3.69
580 581 1.787057 ATCACGTCCTCGCTCGATCC 61.787 60.000 0.00 0.00 41.18 3.36
581 582 3.210528 ACGTCCTCGCTCGATCCC 61.211 66.667 0.00 0.00 41.18 3.85
582 583 4.315122 CGTCCTCGCTCGATCCCG 62.315 72.222 0.00 0.00 37.07 5.14
583 584 4.632458 GTCCTCGCTCGATCCCGC 62.632 72.222 0.00 0.00 35.37 6.13
606 607 4.899239 CCCGCTCGCCCACATCTC 62.899 72.222 0.00 0.00 0.00 2.75
614 615 1.452108 GCCCACATCTCCCCTTTCG 60.452 63.158 0.00 0.00 0.00 3.46
623 624 0.458716 CTCCCCTTTCGCTCGTCTTC 60.459 60.000 0.00 0.00 0.00 2.87
642 643 4.528596 TCTTCTCCTCTCAAACCCTAACAG 59.471 45.833 0.00 0.00 0.00 3.16
1077 4067 1.076632 CTCTGTACTCCTCCGGGCT 60.077 63.158 0.00 0.00 0.00 5.19
1245 4244 0.661020 CGGTGGACCACAAGTTTGTC 59.339 55.000 25.75 5.14 39.91 3.18
1276 4275 1.228657 AAAGCTCCTTGTCGCGTTCC 61.229 55.000 5.77 0.00 0.00 3.62
1376 4375 1.320344 TTCATGAGGCGCTACTCCGT 61.320 55.000 7.64 0.00 36.66 4.69
1380 4379 4.444081 AGGCGCTACTCCGTCCCT 62.444 66.667 7.64 0.00 32.25 4.20
1437 4436 0.659427 CGGCGCATGATCTGATGTTT 59.341 50.000 10.83 0.00 0.00 2.83
1442 4441 4.053983 GCGCATGATCTGATGTTTCTCTA 58.946 43.478 0.30 0.00 0.00 2.43
1505 4514 5.407084 TCAAAACGCAGAGTTCGAATTATCA 59.593 36.000 0.00 0.00 43.37 2.15
1652 4664 4.208460 CACACACCTTATAAATCCGTAGCG 59.792 45.833 0.00 0.00 0.00 4.26
1809 4822 7.548097 GTCGGTCTGTATGTCCATATATTGAT 58.452 38.462 0.00 0.00 0.00 2.57
1926 4941 1.069204 GGCGGAGAGAACATAGCATCA 59.931 52.381 0.00 0.00 0.00 3.07
1996 5011 2.410053 GTCTTGATGACGAACTGACAGC 59.590 50.000 1.25 0.00 35.81 4.40
2064 5080 9.595823 GGGCAAACTATATGTGTATACGATTAT 57.404 33.333 0.00 0.00 0.00 1.28
2134 5150 8.621532 TTTCCATATCTGAGTTGGTTATATGC 57.378 34.615 8.11 0.00 31.90 3.14
2218 5234 9.698309 CTAGTACATGATTCTATTCCGTTTCAT 57.302 33.333 0.00 0.00 0.00 2.57
2307 5323 7.922505 TGTTAATTTCACAAAATCTCCAACG 57.077 32.000 0.00 0.00 33.93 4.10
2450 5466 0.241749 TTGCCTTTCATTGCAGCGAG 59.758 50.000 0.00 0.00 38.95 5.03
2468 5484 2.795329 GAGCCCCAAAACAGATTCTCA 58.205 47.619 0.00 0.00 0.00 3.27
2579 5597 9.090692 GCTGAAGTAAATAAATGTGCATGAAAT 57.909 29.630 0.00 0.00 0.00 2.17
2629 5649 7.913674 AAAAATGACTAGAGTTTAGAGCAGG 57.086 36.000 0.00 0.00 0.00 4.85
2633 5653 6.026947 TGACTAGAGTTTAGAGCAGGAAAC 57.973 41.667 0.00 0.00 36.08 2.78
2659 5679 8.834465 CCCACTTCTCTTTGTGATTCATATTAG 58.166 37.037 0.00 0.00 36.38 1.73
2711 5731 7.829211 ACACTGTATAACTGGCTATCACATTTT 59.171 33.333 0.00 0.00 0.00 1.82
2804 5824 8.962884 ATTTGCTTGAAAAACTTGAGGTAATT 57.037 26.923 0.00 0.00 0.00 1.40
2866 5886 6.549364 ACAGGAAACTTCACCAATGAATACAA 59.451 34.615 0.00 0.00 43.92 2.41
2867 5887 7.069331 ACAGGAAACTTCACCAATGAATACAAA 59.931 33.333 0.00 0.00 43.92 2.83
3192 6216 3.433274 TGTCTTGTCTTATTTGCTGCTCG 59.567 43.478 0.00 0.00 0.00 5.03
3210 6234 6.203808 TGCTCGTTTGATGTGTATACTACT 57.796 37.500 4.17 0.00 0.00 2.57
3406 6430 4.463559 GCTATGGCTTTGTGCTTTTCAGC 61.464 47.826 0.00 0.00 42.39 4.26
3433 6457 4.084066 GCTTTAAATTTTCCCCAACGCTTG 60.084 41.667 0.00 0.00 0.00 4.01
3439 6463 1.253100 TTCCCCAACGCTTGATTTCC 58.747 50.000 0.15 0.00 0.00 3.13
3503 6527 7.064016 TCCAAGTGTTTGTTTAAATTGAACTGC 59.936 33.333 2.43 0.00 32.21 4.40
3520 6544 2.233271 CTGCCCATTACCCATAAGCTG 58.767 52.381 0.00 0.00 0.00 4.24
3526 6550 4.097892 CCCATTACCCATAAGCTGTTCAAC 59.902 45.833 0.00 0.00 0.00 3.18
3527 6551 4.949856 CCATTACCCATAAGCTGTTCAACT 59.050 41.667 0.00 0.00 0.00 3.16
3540 6564 4.785341 GCTGTTCAACTTTGGTCTGTTACG 60.785 45.833 0.00 0.00 0.00 3.18
3692 6716 1.142748 GATCGGTGAGCTCTGTGGG 59.857 63.158 16.19 0.00 0.00 4.61
3770 6794 0.874390 GCAGACAACATTTCTCGGCA 59.126 50.000 0.00 0.00 0.00 5.69
3785 6809 2.343101 TCGGCAAAGTAAACGAGATGG 58.657 47.619 0.00 0.00 0.00 3.51
3893 6918 1.641577 ATAAGTCGTCTGGCTTTCGC 58.358 50.000 0.00 0.00 0.00 4.70
4021 7046 4.426736 TTCAATAGCATGATCAGCCAGA 57.573 40.909 0.09 0.00 0.00 3.86
4022 7047 3.736720 TCAATAGCATGATCAGCCAGAC 58.263 45.455 0.09 0.00 0.00 3.51
4025 7050 4.804868 ATAGCATGATCAGCCAGACTAG 57.195 45.455 0.09 0.00 0.00 2.57
4028 7053 3.320541 AGCATGATCAGCCAGACTAGTAC 59.679 47.826 0.09 0.00 0.00 2.73
4056 7085 3.211045 GTTTCAGTAGGGAGTGCACAAA 58.789 45.455 21.04 4.32 0.00 2.83
4059 7088 2.171659 TCAGTAGGGAGTGCACAAACAA 59.828 45.455 21.04 0.00 0.00 2.83
4080 7109 6.294473 ACAATGGATTGGATCTCTGTATCAC 58.706 40.000 4.45 0.00 41.96 3.06
4222 7251 3.474570 GGTCTGATCCAGGGCGCT 61.475 66.667 7.64 0.00 31.51 5.92
4391 7420 1.074623 CTCCTGGATCAGCCCCTCT 60.075 63.158 0.00 0.00 34.97 3.69
4458 7487 4.316823 AGGTGCTCCCCCTGTCGA 62.317 66.667 0.00 0.00 0.00 4.20
4468 7497 4.457496 CCTGTCGACGCCCATGCT 62.457 66.667 11.62 0.00 34.43 3.79
4470 7499 3.939837 CTGTCGACGCCCATGCTGT 62.940 63.158 11.62 0.00 34.43 4.40
4480 7509 2.191375 CATGCTGTGCCCGATCCT 59.809 61.111 0.00 0.00 0.00 3.24
4507 7536 1.804151 CGGCGAAGAACAAAGGATCAA 59.196 47.619 0.00 0.00 0.00 2.57
4513 7542 5.444122 CGAAGAACAAAGGATCAAGAACAC 58.556 41.667 0.00 0.00 0.00 3.32
4521 7554 2.478335 GATCAAGAACACCCGGCCCA 62.478 60.000 0.00 0.00 0.00 5.36
4710 7768 2.126071 TCTAGGACGTTGCTGCGC 60.126 61.111 0.00 0.00 34.88 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.586422 CCCATGATCGCTTCGTGAAT 58.414 50.000 0.00 0.00 42.99 2.57
1 2 1.089481 GCCCATGATCGCTTCGTGAA 61.089 55.000 0.00 0.00 42.99 3.18
2 3 1.521457 GCCCATGATCGCTTCGTGA 60.521 57.895 0.00 0.00 42.99 4.35
3 4 1.493950 GAGCCCATGATCGCTTCGTG 61.494 60.000 0.00 1.62 40.49 4.35
4 5 1.227380 GAGCCCATGATCGCTTCGT 60.227 57.895 0.00 0.00 34.84 3.85
5 6 0.315251 TAGAGCCCATGATCGCTTCG 59.685 55.000 0.00 0.00 34.84 3.79
15 16 6.731467 TCCAGAAAAATAAACTAGAGCCCAT 58.269 36.000 0.00 0.00 0.00 4.00
28 29 4.451900 GAATCCCTCGCTCCAGAAAAATA 58.548 43.478 0.00 0.00 0.00 1.40
40 41 2.110006 GAGCTGGGAATCCCTCGC 59.890 66.667 20.55 20.46 45.70 5.03
75 76 3.617735 TGCCTCACGTACCGCCAA 61.618 61.111 0.00 0.00 0.00 4.52
76 77 4.367023 GTGCCTCACGTACCGCCA 62.367 66.667 0.00 0.00 0.00 5.69
77 78 2.609183 CTAGTGCCTCACGTACCGCC 62.609 65.000 0.00 0.00 39.64 6.13
78 79 1.226603 CTAGTGCCTCACGTACCGC 60.227 63.158 0.00 0.00 39.64 5.68
79 80 1.226603 GCTAGTGCCTCACGTACCG 60.227 63.158 0.00 0.00 39.64 4.02
80 81 0.245539 TTGCTAGTGCCTCACGTACC 59.754 55.000 0.00 0.00 39.64 3.34
81 82 2.295253 ATTGCTAGTGCCTCACGTAC 57.705 50.000 0.00 0.00 39.64 3.67
82 83 2.616960 CAATTGCTAGTGCCTCACGTA 58.383 47.619 0.00 0.00 39.64 3.57
83 84 1.442769 CAATTGCTAGTGCCTCACGT 58.557 50.000 0.00 0.00 39.64 4.49
84 85 0.097674 GCAATTGCTAGTGCCTCACG 59.902 55.000 23.21 0.00 39.36 4.35
85 86 0.097674 CGCAATTGCTAGTGCCTCAC 59.902 55.000 26.86 0.00 42.13 3.51
86 87 1.026182 CCGCAATTGCTAGTGCCTCA 61.026 55.000 26.86 0.00 42.13 3.86
87 88 0.744414 TCCGCAATTGCTAGTGCCTC 60.744 55.000 26.86 0.00 42.13 4.70
88 89 0.745845 CTCCGCAATTGCTAGTGCCT 60.746 55.000 26.86 0.00 42.13 4.75
89 90 1.026718 ACTCCGCAATTGCTAGTGCC 61.027 55.000 26.86 0.00 42.13 5.01
90 91 1.651987 TACTCCGCAATTGCTAGTGC 58.348 50.000 30.42 10.55 41.73 4.40
91 92 4.572389 AGAAATACTCCGCAATTGCTAGTG 59.428 41.667 30.42 22.78 36.22 2.74
92 93 4.572389 CAGAAATACTCCGCAATTGCTAGT 59.428 41.667 27.74 27.74 38.14 2.57
93 94 4.024556 CCAGAAATACTCCGCAATTGCTAG 60.025 45.833 26.86 23.82 39.32 3.42
94 95 3.876914 CCAGAAATACTCCGCAATTGCTA 59.123 43.478 26.86 13.54 39.32 3.49
95 96 2.684881 CCAGAAATACTCCGCAATTGCT 59.315 45.455 26.86 11.71 39.32 3.91
96 97 2.223572 CCCAGAAATACTCCGCAATTGC 60.224 50.000 20.76 20.76 37.78 3.56
97 98 3.016736 ACCCAGAAATACTCCGCAATTG 58.983 45.455 0.00 0.00 0.00 2.32
98 99 3.016736 CACCCAGAAATACTCCGCAATT 58.983 45.455 0.00 0.00 0.00 2.32
99 100 2.643551 CACCCAGAAATACTCCGCAAT 58.356 47.619 0.00 0.00 0.00 3.56
100 101 1.948611 GCACCCAGAAATACTCCGCAA 60.949 52.381 0.00 0.00 0.00 4.85
101 102 0.392461 GCACCCAGAAATACTCCGCA 60.392 55.000 0.00 0.00 0.00 5.69
102 103 0.392461 TGCACCCAGAAATACTCCGC 60.392 55.000 0.00 0.00 0.00 5.54
103 104 2.213499 GATGCACCCAGAAATACTCCG 58.787 52.381 0.00 0.00 0.00 4.63
104 105 2.213499 CGATGCACCCAGAAATACTCC 58.787 52.381 0.00 0.00 0.00 3.85
105 106 2.213499 CCGATGCACCCAGAAATACTC 58.787 52.381 0.00 0.00 0.00 2.59
106 107 1.747206 GCCGATGCACCCAGAAATACT 60.747 52.381 0.00 0.00 37.47 2.12
107 108 0.663153 GCCGATGCACCCAGAAATAC 59.337 55.000 0.00 0.00 37.47 1.89
108 109 0.254462 TGCCGATGCACCCAGAAATA 59.746 50.000 0.00 0.00 44.23 1.40
109 110 1.001020 TGCCGATGCACCCAGAAAT 60.001 52.632 0.00 0.00 44.23 2.17
110 111 2.433888 TGCCGATGCACCCAGAAA 59.566 55.556 0.00 0.00 44.23 2.52
119 120 2.634982 TTGAAAGTGATTGCCGATGC 57.365 45.000 0.00 0.00 38.26 3.91
120 121 9.121517 GAATATATTTGAAAGTGATTGCCGATG 57.878 33.333 0.00 0.00 0.00 3.84
121 122 8.849168 TGAATATATTTGAAAGTGATTGCCGAT 58.151 29.630 0.00 0.00 0.00 4.18
122 123 8.219546 TGAATATATTTGAAAGTGATTGCCGA 57.780 30.769 0.00 0.00 0.00 5.54
135 136 8.783093 CCGCCAAAGAGTTATGAATATATTTGA 58.217 33.333 0.00 0.00 0.00 2.69
136 137 8.567948 ACCGCCAAAGAGTTATGAATATATTTG 58.432 33.333 0.00 0.00 0.00 2.32
137 138 8.691661 ACCGCCAAAGAGTTATGAATATATTT 57.308 30.769 0.00 0.00 0.00 1.40
138 139 9.216117 GTACCGCCAAAGAGTTATGAATATATT 57.784 33.333 0.00 0.00 0.00 1.28
139 140 8.372459 TGTACCGCCAAAGAGTTATGAATATAT 58.628 33.333 0.00 0.00 0.00 0.86
140 141 7.728148 TGTACCGCCAAAGAGTTATGAATATA 58.272 34.615 0.00 0.00 0.00 0.86
141 142 6.588204 TGTACCGCCAAAGAGTTATGAATAT 58.412 36.000 0.00 0.00 0.00 1.28
142 143 5.979993 TGTACCGCCAAAGAGTTATGAATA 58.020 37.500 0.00 0.00 0.00 1.75
143 144 4.839121 TGTACCGCCAAAGAGTTATGAAT 58.161 39.130 0.00 0.00 0.00 2.57
144 145 4.274602 TGTACCGCCAAAGAGTTATGAA 57.725 40.909 0.00 0.00 0.00 2.57
145 146 3.965379 TGTACCGCCAAAGAGTTATGA 57.035 42.857 0.00 0.00 0.00 2.15
146 147 4.188462 TCATGTACCGCCAAAGAGTTATG 58.812 43.478 0.00 0.00 0.00 1.90
147 148 4.442706 CTCATGTACCGCCAAAGAGTTAT 58.557 43.478 0.00 0.00 0.00 1.89
148 149 3.369052 CCTCATGTACCGCCAAAGAGTTA 60.369 47.826 0.00 0.00 0.00 2.24
149 150 2.615493 CCTCATGTACCGCCAAAGAGTT 60.615 50.000 0.00 0.00 0.00 3.01
150 151 1.066143 CCTCATGTACCGCCAAAGAGT 60.066 52.381 0.00 0.00 0.00 3.24
151 152 1.066143 ACCTCATGTACCGCCAAAGAG 60.066 52.381 0.00 0.00 0.00 2.85
152 153 0.981183 ACCTCATGTACCGCCAAAGA 59.019 50.000 0.00 0.00 0.00 2.52
153 154 1.086696 CACCTCATGTACCGCCAAAG 58.913 55.000 0.00 0.00 0.00 2.77
154 155 0.958382 GCACCTCATGTACCGCCAAA 60.958 55.000 0.00 0.00 0.00 3.28
155 156 1.376683 GCACCTCATGTACCGCCAA 60.377 57.895 0.00 0.00 0.00 4.52
156 157 0.973496 TAGCACCTCATGTACCGCCA 60.973 55.000 0.00 0.00 0.00 5.69
157 158 0.249489 CTAGCACCTCATGTACCGCC 60.249 60.000 0.00 0.00 0.00 6.13
158 159 0.876342 GCTAGCACCTCATGTACCGC 60.876 60.000 10.63 0.00 0.00 5.68
159 160 0.459899 TGCTAGCACCTCATGTACCG 59.540 55.000 14.93 0.00 0.00 4.02
160 161 2.691409 TTGCTAGCACCTCATGTACC 57.309 50.000 19.17 0.00 0.00 3.34
161 162 3.242870 GCAATTGCTAGCACCTCATGTAC 60.243 47.826 23.21 0.00 38.21 2.90
162 163 2.945008 GCAATTGCTAGCACCTCATGTA 59.055 45.455 23.21 0.00 38.21 2.29
163 164 1.747355 GCAATTGCTAGCACCTCATGT 59.253 47.619 23.21 0.00 38.21 3.21
164 165 1.268386 CGCAATTGCTAGCACCTCATG 60.268 52.381 26.86 12.74 39.32 3.07
165 166 1.019673 CGCAATTGCTAGCACCTCAT 58.980 50.000 26.86 5.21 39.32 2.90
166 167 1.026182 CCGCAATTGCTAGCACCTCA 61.026 55.000 26.86 2.40 39.32 3.86
167 168 0.744414 TCCGCAATTGCTAGCACCTC 60.744 55.000 26.86 6.16 39.32 3.85
168 169 0.745845 CTCCGCAATTGCTAGCACCT 60.746 55.000 26.86 4.86 39.32 4.00
169 170 1.718757 CCTCCGCAATTGCTAGCACC 61.719 60.000 26.86 5.37 39.32 5.01
170 171 0.744414 TCCTCCGCAATTGCTAGCAC 60.744 55.000 26.86 4.79 39.32 4.40
171 172 0.181114 ATCCTCCGCAATTGCTAGCA 59.819 50.000 26.86 14.93 39.32 3.49
172 173 1.312815 AATCCTCCGCAATTGCTAGC 58.687 50.000 26.86 8.10 39.32 3.42
173 174 6.992063 AATATAATCCTCCGCAATTGCTAG 57.008 37.500 26.86 21.91 39.32 3.42
174 175 7.880713 TGTAAATATAATCCTCCGCAATTGCTA 59.119 33.333 26.86 14.47 39.32 3.49
175 176 6.714810 TGTAAATATAATCCTCCGCAATTGCT 59.285 34.615 26.86 9.88 39.32 3.91
176 177 6.908825 TGTAAATATAATCCTCCGCAATTGC 58.091 36.000 20.76 20.76 37.78 3.56
177 178 9.743057 TTTTGTAAATATAATCCTCCGCAATTG 57.257 29.630 0.00 0.00 0.00 2.32
201 202 6.017605 TGCAATCAAACGCCACATTAATTTTT 60.018 30.769 0.00 0.00 0.00 1.94
202 203 5.468072 TGCAATCAAACGCCACATTAATTTT 59.532 32.000 0.00 0.00 0.00 1.82
203 204 4.993584 TGCAATCAAACGCCACATTAATTT 59.006 33.333 0.00 0.00 0.00 1.82
204 205 4.564041 TGCAATCAAACGCCACATTAATT 58.436 34.783 0.00 0.00 0.00 1.40
205 206 4.185467 TGCAATCAAACGCCACATTAAT 57.815 36.364 0.00 0.00 0.00 1.40
206 207 3.650070 TGCAATCAAACGCCACATTAA 57.350 38.095 0.00 0.00 0.00 1.40
207 208 3.254411 TCTTGCAATCAAACGCCACATTA 59.746 39.130 0.00 0.00 0.00 1.90
208 209 2.035704 TCTTGCAATCAAACGCCACATT 59.964 40.909 0.00 0.00 0.00 2.71
209 210 1.612950 TCTTGCAATCAAACGCCACAT 59.387 42.857 0.00 0.00 0.00 3.21
210 211 1.028130 TCTTGCAATCAAACGCCACA 58.972 45.000 0.00 0.00 0.00 4.17
211 212 2.053627 CTTCTTGCAATCAAACGCCAC 58.946 47.619 0.00 0.00 0.00 5.01
212 213 1.952990 TCTTCTTGCAATCAAACGCCA 59.047 42.857 0.00 0.00 0.00 5.69
213 214 2.704725 TCTTCTTGCAATCAAACGCC 57.295 45.000 0.00 0.00 0.00 5.68
214 215 3.983344 ACAATCTTCTTGCAATCAAACGC 59.017 39.130 0.00 0.00 0.00 4.84
215 216 4.383649 CCACAATCTTCTTGCAATCAAACG 59.616 41.667 0.00 0.00 0.00 3.60
216 217 5.531634 TCCACAATCTTCTTGCAATCAAAC 58.468 37.500 0.00 0.00 0.00 2.93
217 218 5.787953 TCCACAATCTTCTTGCAATCAAA 57.212 34.783 0.00 0.00 0.00 2.69
218 219 5.988310 ATCCACAATCTTCTTGCAATCAA 57.012 34.783 0.00 0.00 0.00 2.57
219 220 5.988310 AATCCACAATCTTCTTGCAATCA 57.012 34.783 0.00 0.00 0.00 2.57
220 221 9.837525 GATATAATCCACAATCTTCTTGCAATC 57.162 33.333 0.00 0.00 0.00 2.67
221 222 9.358406 TGATATAATCCACAATCTTCTTGCAAT 57.642 29.630 0.00 0.00 0.00 3.56
222 223 8.750515 TGATATAATCCACAATCTTCTTGCAA 57.249 30.769 0.00 0.00 0.00 4.08
223 224 8.750515 TTGATATAATCCACAATCTTCTTGCA 57.249 30.769 0.00 0.00 0.00 4.08
224 225 7.806960 GCTTGATATAATCCACAATCTTCTTGC 59.193 37.037 0.00 0.00 0.00 4.01
225 226 8.013947 CGCTTGATATAATCCACAATCTTCTTG 58.986 37.037 0.00 0.00 0.00 3.02
226 227 7.173907 CCGCTTGATATAATCCACAATCTTCTT 59.826 37.037 0.00 0.00 0.00 2.52
227 228 6.652481 CCGCTTGATATAATCCACAATCTTCT 59.348 38.462 0.00 0.00 0.00 2.85
228 229 6.128172 CCCGCTTGATATAATCCACAATCTTC 60.128 42.308 0.00 0.00 0.00 2.87
229 230 5.707298 CCCGCTTGATATAATCCACAATCTT 59.293 40.000 0.00 0.00 0.00 2.40
230 231 5.248640 CCCGCTTGATATAATCCACAATCT 58.751 41.667 0.00 0.00 0.00 2.40
231 232 4.396166 CCCCGCTTGATATAATCCACAATC 59.604 45.833 0.00 0.00 0.00 2.67
232 233 4.042809 TCCCCGCTTGATATAATCCACAAT 59.957 41.667 0.00 0.00 0.00 2.71
233 234 3.392947 TCCCCGCTTGATATAATCCACAA 59.607 43.478 0.00 0.00 0.00 3.33
234 235 2.976185 TCCCCGCTTGATATAATCCACA 59.024 45.455 0.00 0.00 0.00 4.17
235 236 3.695830 TCCCCGCTTGATATAATCCAC 57.304 47.619 0.00 0.00 0.00 4.02
236 237 3.843619 TGATCCCCGCTTGATATAATCCA 59.156 43.478 0.00 0.00 0.00 3.41
237 238 4.487714 TGATCCCCGCTTGATATAATCC 57.512 45.455 0.00 0.00 0.00 3.01
238 239 4.747108 CGATGATCCCCGCTTGATATAATC 59.253 45.833 0.00 0.00 0.00 1.75
239 240 4.443457 CCGATGATCCCCGCTTGATATAAT 60.443 45.833 0.00 0.00 0.00 1.28
240 241 3.118775 CCGATGATCCCCGCTTGATATAA 60.119 47.826 0.00 0.00 0.00 0.98
241 242 2.430694 CCGATGATCCCCGCTTGATATA 59.569 50.000 0.00 0.00 0.00 0.86
242 243 1.208052 CCGATGATCCCCGCTTGATAT 59.792 52.381 0.00 0.00 0.00 1.63
243 244 0.608130 CCGATGATCCCCGCTTGATA 59.392 55.000 0.00 0.00 0.00 2.15
244 245 1.372683 CCGATGATCCCCGCTTGAT 59.627 57.895 0.00 0.00 0.00 2.57
245 246 2.821685 CCGATGATCCCCGCTTGA 59.178 61.111 0.00 0.00 0.00 3.02
246 247 2.974698 GCCGATGATCCCCGCTTG 60.975 66.667 0.00 0.00 0.00 4.01
247 248 4.609018 CGCCGATGATCCCCGCTT 62.609 66.667 0.00 0.00 0.00 4.68
250 251 4.363990 CTCCGCCGATGATCCCCG 62.364 72.222 0.00 0.00 0.00 5.73
251 252 4.688966 GCTCCGCCGATGATCCCC 62.689 72.222 0.00 0.00 0.00 4.81
252 253 3.245668 ATGCTCCGCCGATGATCCC 62.246 63.158 0.00 0.00 0.00 3.85
253 254 2.031516 CATGCTCCGCCGATGATCC 61.032 63.158 0.00 0.00 0.00 3.36
254 255 2.675056 GCATGCTCCGCCGATGATC 61.675 63.158 11.37 0.00 0.00 2.92
255 256 2.667536 GCATGCTCCGCCGATGAT 60.668 61.111 11.37 0.00 0.00 2.45
256 257 4.159901 TGCATGCTCCGCCGATGA 62.160 61.111 20.33 0.00 0.00 2.92
257 258 3.646976 CTGCATGCTCCGCCGATG 61.647 66.667 20.33 0.00 0.00 3.84
267 268 7.532571 TGATTTCATGTATAATAGCTGCATGC 58.467 34.615 11.82 11.82 43.29 4.06
270 271 9.387257 CCTATGATTTCATGTATAATAGCTGCA 57.613 33.333 1.02 0.00 37.15 4.41
271 272 9.388506 ACCTATGATTTCATGTATAATAGCTGC 57.611 33.333 0.00 0.00 37.15 5.25
273 274 9.809096 CGACCTATGATTTCATGTATAATAGCT 57.191 33.333 3.30 0.00 37.15 3.32
274 275 9.587772 ACGACCTATGATTTCATGTATAATAGC 57.412 33.333 3.30 0.00 37.15 2.97
277 278 9.140286 CGAACGACCTATGATTTCATGTATAAT 57.860 33.333 3.30 0.00 37.15 1.28
278 279 7.115805 GCGAACGACCTATGATTTCATGTATAA 59.884 37.037 3.30 0.00 37.15 0.98
279 280 6.584942 GCGAACGACCTATGATTTCATGTATA 59.415 38.462 3.30 0.00 37.15 1.47
280 281 5.405571 GCGAACGACCTATGATTTCATGTAT 59.594 40.000 3.30 0.00 37.15 2.29
281 282 4.743151 GCGAACGACCTATGATTTCATGTA 59.257 41.667 3.30 0.00 37.15 2.29
282 283 3.555956 GCGAACGACCTATGATTTCATGT 59.444 43.478 3.30 0.00 37.15 3.21
283 284 3.362014 CGCGAACGACCTATGATTTCATG 60.362 47.826 0.00 0.00 43.93 3.07
284 285 2.794910 CGCGAACGACCTATGATTTCAT 59.205 45.455 0.00 0.00 43.93 2.57
285 286 2.190161 CGCGAACGACCTATGATTTCA 58.810 47.619 0.00 0.00 43.93 2.69
286 287 2.190981 ACGCGAACGACCTATGATTTC 58.809 47.619 15.93 0.00 43.93 2.17
287 288 2.159282 AGACGCGAACGACCTATGATTT 60.159 45.455 15.93 0.00 43.93 2.17
288 289 1.404391 AGACGCGAACGACCTATGATT 59.596 47.619 15.93 0.00 43.93 2.57
289 290 1.022735 AGACGCGAACGACCTATGAT 58.977 50.000 15.93 0.00 43.93 2.45
290 291 0.806868 AAGACGCGAACGACCTATGA 59.193 50.000 15.93 0.00 43.93 2.15
291 292 1.625616 AAAGACGCGAACGACCTATG 58.374 50.000 15.93 0.00 43.93 2.23
292 293 2.358939 AAAAGACGCGAACGACCTAT 57.641 45.000 15.93 0.00 43.93 2.57
293 294 2.138596 AAAAAGACGCGAACGACCTA 57.861 45.000 15.93 0.00 43.93 3.08
294 295 2.138596 TAAAAAGACGCGAACGACCT 57.861 45.000 15.93 0.00 43.93 3.85
295 296 2.531610 CGATAAAAAGACGCGAACGACC 60.532 50.000 15.93 0.00 43.93 4.79
296 297 2.664685 CGATAAAAAGACGCGAACGAC 58.335 47.619 15.93 0.00 43.93 4.34
297 298 1.058129 GCGATAAAAAGACGCGAACGA 59.942 47.619 15.93 0.00 43.93 3.85
304 305 9.144085 GATAATGTTACAAGCGATAAAAAGACG 57.856 33.333 0.00 0.00 0.00 4.18
305 306 9.434559 GGATAATGTTACAAGCGATAAAAAGAC 57.565 33.333 0.00 0.00 0.00 3.01
306 307 9.168451 TGGATAATGTTACAAGCGATAAAAAGA 57.832 29.630 0.00 0.00 0.00 2.52
307 308 9.950680 ATGGATAATGTTACAAGCGATAAAAAG 57.049 29.630 0.00 0.00 0.00 2.27
308 309 9.729023 CATGGATAATGTTACAAGCGATAAAAA 57.271 29.630 0.00 0.00 0.00 1.94
309 310 9.114952 TCATGGATAATGTTACAAGCGATAAAA 57.885 29.630 0.00 0.00 37.56 1.52
310 311 8.669946 TCATGGATAATGTTACAAGCGATAAA 57.330 30.769 0.00 0.00 37.56 1.40
311 312 7.931407 ACTCATGGATAATGTTACAAGCGATAA 59.069 33.333 0.00 0.00 37.56 1.75
312 313 7.441836 ACTCATGGATAATGTTACAAGCGATA 58.558 34.615 0.00 0.00 37.56 2.92
313 314 6.291377 ACTCATGGATAATGTTACAAGCGAT 58.709 36.000 0.00 0.00 37.56 4.58
314 315 5.670485 ACTCATGGATAATGTTACAAGCGA 58.330 37.500 0.00 0.00 37.56 4.93
315 316 5.991328 ACTCATGGATAATGTTACAAGCG 57.009 39.130 0.00 0.00 37.56 4.68
316 317 8.345565 CCTAAACTCATGGATAATGTTACAAGC 58.654 37.037 0.00 0.00 37.56 4.01
317 318 9.613428 TCCTAAACTCATGGATAATGTTACAAG 57.387 33.333 0.00 0.00 37.56 3.16
318 319 9.613428 CTCCTAAACTCATGGATAATGTTACAA 57.387 33.333 0.00 0.00 37.56 2.41
319 320 7.715249 GCTCCTAAACTCATGGATAATGTTACA 59.285 37.037 0.00 0.00 37.56 2.41
320 321 7.934120 AGCTCCTAAACTCATGGATAATGTTAC 59.066 37.037 0.00 0.00 37.56 2.50
321 322 8.034313 AGCTCCTAAACTCATGGATAATGTTA 57.966 34.615 0.00 0.00 37.56 2.41
322 323 6.904626 AGCTCCTAAACTCATGGATAATGTT 58.095 36.000 0.00 0.00 37.56 2.71
323 324 6.506538 AGCTCCTAAACTCATGGATAATGT 57.493 37.500 0.00 0.00 37.56 2.71
324 325 5.636965 CGAGCTCCTAAACTCATGGATAATG 59.363 44.000 8.47 0.00 37.66 1.90
325 326 5.540337 TCGAGCTCCTAAACTCATGGATAAT 59.460 40.000 8.47 0.00 32.98 1.28
326 327 4.893524 TCGAGCTCCTAAACTCATGGATAA 59.106 41.667 8.47 0.00 32.98 1.75
327 328 4.470602 TCGAGCTCCTAAACTCATGGATA 58.529 43.478 8.47 0.00 32.98 2.59
328 329 3.300388 TCGAGCTCCTAAACTCATGGAT 58.700 45.455 8.47 0.00 32.98 3.41
329 330 2.735151 TCGAGCTCCTAAACTCATGGA 58.265 47.619 8.47 0.00 32.98 3.41
330 331 3.526931 TTCGAGCTCCTAAACTCATGG 57.473 47.619 8.47 0.00 32.98 3.66
331 332 5.276584 CGAAATTCGAGCTCCTAAACTCATG 60.277 44.000 10.18 0.00 43.74 3.07
332 333 4.806247 CGAAATTCGAGCTCCTAAACTCAT 59.194 41.667 10.18 0.00 43.74 2.90
333 334 4.082408 TCGAAATTCGAGCTCCTAAACTCA 60.082 41.667 14.59 0.00 44.82 3.41
334 335 4.421948 TCGAAATTCGAGCTCCTAAACTC 58.578 43.478 14.59 3.67 44.82 3.01
335 336 4.451629 TCGAAATTCGAGCTCCTAAACT 57.548 40.909 14.59 0.00 44.82 2.66
347 348 1.656095 GAGTGTGAGGCTCGAAATTCG 59.344 52.381 9.38 9.38 42.10 3.34
348 349 2.926838 GAGAGTGTGAGGCTCGAAATTC 59.073 50.000 10.42 4.36 37.99 2.17
349 350 2.966050 GAGAGTGTGAGGCTCGAAATT 58.034 47.619 10.42 0.00 37.99 1.82
350 351 2.663826 GAGAGTGTGAGGCTCGAAAT 57.336 50.000 10.42 0.00 37.99 2.17
355 356 0.380378 CTAGCGAGAGTGTGAGGCTC 59.620 60.000 7.79 7.79 35.28 4.70
356 357 1.034838 CCTAGCGAGAGTGTGAGGCT 61.035 60.000 0.00 0.00 37.73 4.58
357 358 1.435515 CCTAGCGAGAGTGTGAGGC 59.564 63.158 0.00 0.00 0.00 4.70
358 359 1.315981 TGCCTAGCGAGAGTGTGAGG 61.316 60.000 0.00 0.00 0.00 3.86
359 360 0.743688 ATGCCTAGCGAGAGTGTGAG 59.256 55.000 0.00 0.00 0.00 3.51
360 361 0.457443 CATGCCTAGCGAGAGTGTGA 59.543 55.000 0.00 0.00 0.00 3.58
361 362 1.150567 GCATGCCTAGCGAGAGTGTG 61.151 60.000 6.36 0.00 0.00 3.82
362 363 1.142748 GCATGCCTAGCGAGAGTGT 59.857 57.895 6.36 0.00 0.00 3.55
363 364 0.597118 GAGCATGCCTAGCGAGAGTG 60.597 60.000 15.66 0.00 37.01 3.51
364 365 0.754957 AGAGCATGCCTAGCGAGAGT 60.755 55.000 15.66 0.00 37.01 3.24
365 366 0.388659 AAGAGCATGCCTAGCGAGAG 59.611 55.000 15.66 0.00 37.01 3.20
366 367 0.826715 AAAGAGCATGCCTAGCGAGA 59.173 50.000 15.66 0.00 37.01 4.04
367 368 1.216122 GAAAGAGCATGCCTAGCGAG 58.784 55.000 15.66 0.00 37.01 5.03
368 369 0.536724 TGAAAGAGCATGCCTAGCGA 59.463 50.000 15.66 0.00 37.01 4.93
369 370 0.654683 GTGAAAGAGCATGCCTAGCG 59.345 55.000 15.66 0.00 37.01 4.26
370 371 2.035530 AGTGAAAGAGCATGCCTAGC 57.964 50.000 15.66 7.51 0.00 3.42
371 372 2.681848 CCAAGTGAAAGAGCATGCCTAG 59.318 50.000 15.66 0.00 0.00 3.02
372 373 2.618816 CCCAAGTGAAAGAGCATGCCTA 60.619 50.000 15.66 0.00 0.00 3.93
373 374 1.542492 CCAAGTGAAAGAGCATGCCT 58.458 50.000 15.66 8.56 0.00 4.75
374 375 0.529378 CCCAAGTGAAAGAGCATGCC 59.471 55.000 15.66 6.03 0.00 4.40
375 376 0.108945 GCCCAAGTGAAAGAGCATGC 60.109 55.000 10.51 10.51 0.00 4.06
376 377 1.471684 GAGCCCAAGTGAAAGAGCATG 59.528 52.381 0.00 0.00 0.00 4.06
377 378 1.831580 GAGCCCAAGTGAAAGAGCAT 58.168 50.000 0.00 0.00 0.00 3.79
378 379 0.603707 CGAGCCCAAGTGAAAGAGCA 60.604 55.000 0.00 0.00 0.00 4.26
379 380 1.301677 CCGAGCCCAAGTGAAAGAGC 61.302 60.000 0.00 0.00 0.00 4.09
380 381 0.035458 ACCGAGCCCAAGTGAAAGAG 59.965 55.000 0.00 0.00 0.00 2.85
381 382 0.034896 GACCGAGCCCAAGTGAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
382 383 1.291877 CGACCGAGCCCAAGTGAAAG 61.292 60.000 0.00 0.00 0.00 2.62
383 384 1.301401 CGACCGAGCCCAAGTGAAA 60.301 57.895 0.00 0.00 0.00 2.69
384 385 2.342279 CGACCGAGCCCAAGTGAA 59.658 61.111 0.00 0.00 0.00 3.18
385 386 4.373116 GCGACCGAGCCCAAGTGA 62.373 66.667 0.00 0.00 0.00 3.41
393 394 2.480555 CAAACATGGCGACCGAGC 59.519 61.111 0.00 0.00 0.00 5.03
394 395 1.234615 AACCAAACATGGCGACCGAG 61.235 55.000 0.00 0.00 0.00 4.63
395 396 0.035036 TAACCAAACATGGCGACCGA 59.965 50.000 0.00 0.00 0.00 4.69
396 397 0.446222 CTAACCAAACATGGCGACCG 59.554 55.000 0.00 0.00 0.00 4.79
397 398 0.808755 CCTAACCAAACATGGCGACC 59.191 55.000 0.00 0.00 0.00 4.79
398 399 1.467342 GTCCTAACCAAACATGGCGAC 59.533 52.381 0.00 0.00 0.00 5.19
399 400 1.072489 TGTCCTAACCAAACATGGCGA 59.928 47.619 0.00 0.00 0.00 5.54
400 401 1.529226 TGTCCTAACCAAACATGGCG 58.471 50.000 0.00 0.00 0.00 5.69
401 402 2.029380 GGTTGTCCTAACCAAACATGGC 60.029 50.000 0.00 0.00 40.03 4.40
402 403 2.560981 GGGTTGTCCTAACCAAACATGG 59.439 50.000 10.63 0.00 42.03 3.66
403 404 2.227865 CGGGTTGTCCTAACCAAACATG 59.772 50.000 10.63 0.00 42.03 3.21
404 405 2.106857 TCGGGTTGTCCTAACCAAACAT 59.893 45.455 10.63 0.00 42.03 2.71
405 406 1.489649 TCGGGTTGTCCTAACCAAACA 59.510 47.619 10.63 0.00 42.03 2.83
406 407 2.259266 TCGGGTTGTCCTAACCAAAC 57.741 50.000 10.63 0.00 42.03 2.93
407 408 3.294038 TTTCGGGTTGTCCTAACCAAA 57.706 42.857 10.63 1.65 42.03 3.28
408 409 3.294038 TTTTCGGGTTGTCCTAACCAA 57.706 42.857 10.63 0.00 42.03 3.67
409 410 3.512219 ATTTTCGGGTTGTCCTAACCA 57.488 42.857 10.63 0.00 42.03 3.67
410 411 4.278919 TCAAATTTTCGGGTTGTCCTAACC 59.721 41.667 0.22 0.22 39.56 2.85
411 412 5.441709 TCAAATTTTCGGGTTGTCCTAAC 57.558 39.130 0.00 0.00 0.00 2.34
412 413 6.658188 ATTCAAATTTTCGGGTTGTCCTAA 57.342 33.333 0.00 0.00 0.00 2.69
413 414 6.658188 AATTCAAATTTTCGGGTTGTCCTA 57.342 33.333 0.00 0.00 0.00 2.94
414 415 5.545063 AATTCAAATTTTCGGGTTGTCCT 57.455 34.783 0.00 0.00 0.00 3.85
415 416 6.612247 AAAATTCAAATTTTCGGGTTGTCC 57.388 33.333 7.47 0.00 43.12 4.02
416 417 8.440059 GGATAAAATTCAAATTTTCGGGTTGTC 58.560 33.333 14.85 1.69 43.12 3.18
417 418 7.934120 TGGATAAAATTCAAATTTTCGGGTTGT 59.066 29.630 14.85 0.00 43.12 3.32
418 419 8.316640 TGGATAAAATTCAAATTTTCGGGTTG 57.683 30.769 14.85 0.00 43.12 3.77
419 420 8.945057 CATGGATAAAATTCAAATTTTCGGGTT 58.055 29.630 14.85 0.00 43.12 4.11
420 421 8.100164 ACATGGATAAAATTCAAATTTTCGGGT 58.900 29.630 14.85 6.02 43.12 5.28
421 422 8.491331 ACATGGATAAAATTCAAATTTTCGGG 57.509 30.769 14.85 5.55 43.12 5.14
429 430 9.730705 TGGCATTTTACATGGATAAAATTCAAA 57.269 25.926 10.00 0.00 40.94 2.69
430 431 9.902684 ATGGCATTTTACATGGATAAAATTCAA 57.097 25.926 10.00 2.54 40.94 2.69
435 436 9.814899 CTGTTATGGCATTTTACATGGATAAAA 57.185 29.630 4.78 0.59 38.16 1.52
436 437 8.976353 ACTGTTATGGCATTTTACATGGATAAA 58.024 29.630 4.78 0.00 0.00 1.40
437 438 8.532186 ACTGTTATGGCATTTTACATGGATAA 57.468 30.769 4.78 0.00 0.00 1.75
438 439 8.532186 AACTGTTATGGCATTTTACATGGATA 57.468 30.769 4.78 0.00 0.00 2.59
439 440 7.422465 AACTGTTATGGCATTTTACATGGAT 57.578 32.000 4.78 0.00 0.00 3.41
440 441 6.849085 AACTGTTATGGCATTTTACATGGA 57.151 33.333 4.78 0.00 0.00 3.41
441 442 7.095910 TCAAACTGTTATGGCATTTTACATGG 58.904 34.615 4.78 0.74 0.00 3.66
442 443 8.531622 TTCAAACTGTTATGGCATTTTACATG 57.468 30.769 4.78 4.42 0.00 3.21
446 447 9.364989 GCTTATTCAAACTGTTATGGCATTTTA 57.635 29.630 4.78 0.00 0.00 1.52
447 448 7.334171 GGCTTATTCAAACTGTTATGGCATTTT 59.666 33.333 4.78 0.00 0.00 1.82
448 449 6.818142 GGCTTATTCAAACTGTTATGGCATTT 59.182 34.615 4.78 0.00 0.00 2.32
449 450 6.155049 AGGCTTATTCAAACTGTTATGGCATT 59.845 34.615 4.78 0.00 0.00 3.56
450 451 5.658190 AGGCTTATTCAAACTGTTATGGCAT 59.342 36.000 4.88 4.88 0.00 4.40
451 452 5.016173 AGGCTTATTCAAACTGTTATGGCA 58.984 37.500 0.00 0.00 0.00 4.92
452 453 5.343249 CAGGCTTATTCAAACTGTTATGGC 58.657 41.667 0.00 0.00 0.00 4.40
453 454 5.679638 GCCAGGCTTATTCAAACTGTTATGG 60.680 44.000 3.29 0.00 0.00 2.74
454 455 5.343249 GCCAGGCTTATTCAAACTGTTATG 58.657 41.667 3.29 0.00 0.00 1.90
455 456 4.096382 CGCCAGGCTTATTCAAACTGTTAT 59.904 41.667 10.54 0.00 0.00 1.89
456 457 3.438781 CGCCAGGCTTATTCAAACTGTTA 59.561 43.478 10.54 0.00 0.00 2.41
457 458 2.228822 CGCCAGGCTTATTCAAACTGTT 59.771 45.455 10.54 0.00 0.00 3.16
458 459 1.812571 CGCCAGGCTTATTCAAACTGT 59.187 47.619 10.54 0.00 0.00 3.55
459 460 2.083774 TCGCCAGGCTTATTCAAACTG 58.916 47.619 10.54 0.00 0.00 3.16
460 461 2.027192 TCTCGCCAGGCTTATTCAAACT 60.027 45.455 10.54 0.00 0.00 2.66
461 462 2.356135 TCTCGCCAGGCTTATTCAAAC 58.644 47.619 10.54 0.00 0.00 2.93
462 463 2.779755 TCTCGCCAGGCTTATTCAAA 57.220 45.000 10.54 0.00 0.00 2.69
463 464 2.779755 TTCTCGCCAGGCTTATTCAA 57.220 45.000 10.54 0.00 0.00 2.69
464 465 2.092968 ACATTCTCGCCAGGCTTATTCA 60.093 45.455 10.54 0.00 0.00 2.57
465 466 2.545946 GACATTCTCGCCAGGCTTATTC 59.454 50.000 10.54 0.00 0.00 1.75
466 467 2.171448 AGACATTCTCGCCAGGCTTATT 59.829 45.455 10.54 0.00 0.00 1.40
467 468 1.765314 AGACATTCTCGCCAGGCTTAT 59.235 47.619 10.54 0.00 0.00 1.73
468 469 1.195115 AGACATTCTCGCCAGGCTTA 58.805 50.000 10.54 0.00 0.00 3.09
469 470 1.137872 CTAGACATTCTCGCCAGGCTT 59.862 52.381 10.54 0.00 0.00 4.35
470 471 0.749649 CTAGACATTCTCGCCAGGCT 59.250 55.000 10.54 0.00 0.00 4.58
471 472 0.747255 TCTAGACATTCTCGCCAGGC 59.253 55.000 0.00 0.00 0.00 4.85
472 473 3.526931 TTTCTAGACATTCTCGCCAGG 57.473 47.619 0.00 0.00 0.00 4.45
473 474 4.201628 CGTTTTTCTAGACATTCTCGCCAG 60.202 45.833 0.00 0.00 0.00 4.85
474 475 3.678072 CGTTTTTCTAGACATTCTCGCCA 59.322 43.478 0.00 0.00 0.00 5.69
475 476 3.678548 ACGTTTTTCTAGACATTCTCGCC 59.321 43.478 0.00 0.00 0.00 5.54
476 477 4.905412 ACGTTTTTCTAGACATTCTCGC 57.095 40.909 0.00 0.00 0.00 5.03
490 491 6.863275 ACTCCAGATTCAGAAAAACGTTTTT 58.137 32.000 32.90 32.90 42.60 1.94
491 492 6.451064 ACTCCAGATTCAGAAAAACGTTTT 57.549 33.333 20.26 20.26 0.00 2.43
492 493 6.451064 AACTCCAGATTCAGAAAAACGTTT 57.549 33.333 7.96 7.96 0.00 3.60
493 494 5.277345 CGAACTCCAGATTCAGAAAAACGTT 60.277 40.000 0.00 0.00 0.00 3.99
494 495 4.211374 CGAACTCCAGATTCAGAAAAACGT 59.789 41.667 0.00 0.00 0.00 3.99
495 496 4.447724 TCGAACTCCAGATTCAGAAAAACG 59.552 41.667 0.00 0.00 0.00 3.60
496 497 5.467063 ACTCGAACTCCAGATTCAGAAAAAC 59.533 40.000 0.00 0.00 0.00 2.43
497 498 5.611374 ACTCGAACTCCAGATTCAGAAAAA 58.389 37.500 0.00 0.00 0.00 1.94
498 499 5.215252 ACTCGAACTCCAGATTCAGAAAA 57.785 39.130 0.00 0.00 0.00 2.29
499 500 4.873746 ACTCGAACTCCAGATTCAGAAA 57.126 40.909 0.00 0.00 0.00 2.52
500 501 4.873746 AACTCGAACTCCAGATTCAGAA 57.126 40.909 0.00 0.00 0.00 3.02
501 502 4.873746 AAACTCGAACTCCAGATTCAGA 57.126 40.909 0.00 0.00 0.00 3.27
502 503 5.931441 AAAAACTCGAACTCCAGATTCAG 57.069 39.130 0.00 0.00 0.00 3.02
530 531 0.676466 TCTTGGCGGTGGCATAACAG 60.676 55.000 0.00 0.00 42.47 3.16
542 543 0.041663 TCGAAGCGTTTTTCTTGGCG 60.042 50.000 0.00 0.00 0.00 5.69
559 560 2.107151 ATCGAGCGAGGACGTGATCG 62.107 60.000 13.21 13.21 41.98 3.69
606 607 0.458716 GAGAAGACGAGCGAAAGGGG 60.459 60.000 0.00 0.00 0.00 4.79
614 615 2.601804 GTTTGAGAGGAGAAGACGAGC 58.398 52.381 0.00 0.00 0.00 5.03
623 624 2.675317 CGCTGTTAGGGTTTGAGAGGAG 60.675 54.545 0.00 0.00 0.00 3.69
958 3947 1.337260 GGAGAAGATGCGTGAGTGTGT 60.337 52.381 0.00 0.00 0.00 3.72
959 3948 1.337167 TGGAGAAGATGCGTGAGTGTG 60.337 52.381 0.00 0.00 0.00 3.82
1077 4067 2.231380 GGCTTCCAGGAGGGGTGAA 61.231 63.158 0.00 0.00 37.22 3.18
1143 4142 2.267324 GAGAAGAGCAGCGCCCTT 59.733 61.111 2.29 2.29 0.00 3.95
1144 4143 3.780173 GGAGAAGAGCAGCGCCCT 61.780 66.667 2.29 0.00 0.00 5.19
1245 4244 5.555966 ACAAGGAGCTTTAAAGAAGGAGAG 58.444 41.667 19.48 5.11 0.00 3.20
1276 4275 5.227238 AGAAACGCAAATGCTGAAGATAG 57.773 39.130 3.63 0.00 39.32 2.08
1333 4332 3.149196 ACCATGCTTGAACTTGACGATT 58.851 40.909 0.22 0.00 0.00 3.34
1336 4335 2.033299 ACAACCATGCTTGAACTTGACG 59.967 45.455 7.75 0.00 0.00 4.35
1376 4375 7.338710 CAATTTGACTAGTCCTATTTCAGGGA 58.661 38.462 20.11 0.00 45.58 4.20
1380 4379 6.480763 TGCCAATTTGACTAGTCCTATTTCA 58.519 36.000 20.11 14.28 0.00 2.69
1390 4389 7.741027 ATCACAGATATGCCAATTTGACTAG 57.259 36.000 0.00 0.00 0.00 2.57
1461 4463 5.756195 TGATAGATAAGCATGTTGGCAAC 57.244 39.130 23.12 23.12 35.83 4.17
1505 4514 7.123098 TCAATGGATGAGCTTCATATGTTGTTT 59.877 33.333 1.90 0.00 37.20 2.83
1558 4570 9.034544 GCATTGTAAATAGATTTGGAATGGAAC 57.965 33.333 15.50 0.91 34.11 3.62
1559 4571 8.203485 GGCATTGTAAATAGATTTGGAATGGAA 58.797 33.333 15.50 0.00 34.11 3.53
1560 4572 7.469870 CGGCATTGTAAATAGATTTGGAATGGA 60.470 37.037 15.50 0.00 34.11 3.41
1652 4664 0.755686 CTAGAGGGGAGCATGGTCAC 59.244 60.000 25.18 22.30 0.00 3.67
1809 4822 1.305297 ACTCGGATCACTGGCTCCA 60.305 57.895 0.00 0.00 0.00 3.86
1835 4848 4.603535 GGCACCCCCACACAGCTT 62.604 66.667 0.00 0.00 0.00 3.74
1843 4856 3.660571 CCATGTGAGGCACCCCCA 61.661 66.667 0.00 0.00 35.39 4.96
1996 5011 1.079543 CACAGCCTCCTCCAGTTCG 60.080 63.158 0.00 0.00 0.00 3.95
2064 5080 8.929487 ACAAATTTTAGGACCAAGGTTATTTCA 58.071 29.630 0.00 0.00 0.00 2.69
2134 5150 4.224715 TCTCGGCATAGATTCTGTAACG 57.775 45.455 0.00 0.00 0.00 3.18
2258 5274 6.374588 TGGGGTCAAGGTTTAATCTAACAAA 58.625 36.000 0.00 0.00 0.00 2.83
2272 5288 4.526262 TGTGAAATTAACATGGGGTCAAGG 59.474 41.667 0.00 0.00 0.00 3.61
2450 5466 2.232208 CCTTGAGAATCTGTTTTGGGGC 59.768 50.000 0.00 0.00 34.92 5.80
2468 5484 3.975168 ATACGTAGTGTTTGAGCCCTT 57.025 42.857 0.08 0.00 45.73 3.95
2579 5597 6.464222 AGCACAGCTTTTCATACTACACTAA 58.536 36.000 0.00 0.00 33.89 2.24
2629 5649 5.299279 TGAATCACAAAGAGAAGTGGGTTTC 59.701 40.000 0.00 0.00 36.43 2.78
2633 5653 7.636150 AATATGAATCACAAAGAGAAGTGGG 57.364 36.000 0.00 0.00 36.43 4.61
2672 5692 7.697710 CAGTTATACAGTGTGGCATTACAAATG 59.302 37.037 5.88 0.00 31.36 2.32
2688 5708 8.677300 ACAAAAATGTGATAGCCAGTTATACAG 58.323 33.333 0.00 0.00 0.00 2.74
2711 5731 8.519526 GGAATTATCAACCTGTTTCATGTACAA 58.480 33.333 0.00 0.00 0.00 2.41
2804 5824 9.784531 GATATCAAGAACTTATCAAGGGAATCA 57.215 33.333 0.00 0.00 0.00 2.57
2866 5886 7.121315 GTGTTAGCCAAATAGAGGATGAACTTT 59.879 37.037 0.00 0.00 0.00 2.66
2867 5887 6.599638 GTGTTAGCCAAATAGAGGATGAACTT 59.400 38.462 0.00 0.00 0.00 2.66
3264 6288 4.438148 TCAGCGTAACATAATAGCAAGCA 58.562 39.130 0.00 0.00 0.00 3.91
3315 6339 9.722184 ATACTCTTCTTAAACTGAAAAGGTACC 57.278 33.333 2.73 2.73 0.00 3.34
3406 6430 4.391523 CGTTGGGGAAAATTTAAAGCCATG 59.608 41.667 0.00 0.00 0.00 3.66
3433 6457 7.946381 AAGAGTGGGATCTTTTAAGGAAATC 57.054 36.000 0.00 0.00 36.05 2.17
3497 6521 2.623416 GCTTATGGGTAATGGGCAGTTC 59.377 50.000 0.00 0.00 0.00 3.01
3503 6527 3.897239 TGAACAGCTTATGGGTAATGGG 58.103 45.455 0.00 0.00 0.00 4.00
3520 6544 4.093850 ACACGTAACAGACCAAAGTTGAAC 59.906 41.667 0.00 0.00 0.00 3.18
3526 6550 5.236478 AGAATCAACACGTAACAGACCAAAG 59.764 40.000 0.00 0.00 0.00 2.77
3527 6551 5.120399 AGAATCAACACGTAACAGACCAAA 58.880 37.500 0.00 0.00 0.00 3.28
3540 6564 5.946377 ACCCCTTTCAGATAAGAATCAACAC 59.054 40.000 0.00 0.00 34.28 3.32
3593 6617 1.457346 CTGCATCCCAGTCAAACCTC 58.543 55.000 0.00 0.00 36.79 3.85
3770 6794 6.575162 AAAAGATGCCATCTCGTTTACTTT 57.425 33.333 7.84 0.18 39.08 2.66
3785 6809 8.668353 TGACAGAATCAACATACTAAAAGATGC 58.332 33.333 0.00 0.00 33.02 3.91
3972 6997 3.784338 ACACACAATTTTTGGACAGCAG 58.216 40.909 0.00 0.00 34.12 4.24
3975 7000 4.502962 ACCAACACACAATTTTTGGACAG 58.497 39.130 6.22 0.00 40.97 3.51
4025 7050 7.652507 GCACTCCCTACTGAAACATAATAGTAC 59.347 40.741 0.00 0.00 0.00 2.73
4028 7053 6.480320 GTGCACTCCCTACTGAAACATAATAG 59.520 42.308 10.32 0.00 0.00 1.73
4056 7085 6.100859 AGTGATACAGAGATCCAATCCATTGT 59.899 38.462 0.00 0.00 36.06 2.71
4059 7088 5.012871 CCAGTGATACAGAGATCCAATCCAT 59.987 44.000 0.00 0.00 0.00 3.41
4222 7251 3.006728 GGGACATGGACGGGGACA 61.007 66.667 0.00 0.00 0.00 4.02
4480 7509 2.127118 GTTCTTCGCCGTCGACGA 60.127 61.111 37.65 16.87 45.43 4.20
4498 7527 1.886655 GCCGGGTGTTCTTGATCCTTT 60.887 52.381 2.18 0.00 0.00 3.11
4499 7528 0.322546 GCCGGGTGTTCTTGATCCTT 60.323 55.000 2.18 0.00 0.00 3.36
4521 7554 1.338973 CATTCACCACTGTTGCAAGCT 59.661 47.619 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.