Multiple sequence alignment - TraesCS3D01G315900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G315900 chr3D 100.000 6351 0 0 1 6351 429309450 429303100 0.000000e+00 11729.0
1 TraesCS3D01G315900 chr3D 96.067 661 23 3 1 658 551075038 551075698 0.000000e+00 1074.0
2 TraesCS3D01G315900 chr3D 97.273 110 3 0 4942 5051 381640915 381640806 3.020000e-43 187.0
3 TraesCS3D01G315900 chr3D 96.629 89 3 0 3124 3212 381989073 381989161 1.430000e-31 148.0
4 TraesCS3D01G315900 chr3D 94.318 88 5 0 3123 3210 157099356 157099443 1.110000e-27 135.0
5 TraesCS3D01G315900 chr3D 92.553 94 6 1 3123 3215 4197109 4197016 3.990000e-27 134.0
6 TraesCS3D01G315900 chr3A 94.760 1355 39 13 664 2007 556547409 556548742 0.000000e+00 2080.0
7 TraesCS3D01G315900 chr3A 92.233 1236 54 17 3208 4416 556549879 556551099 0.000000e+00 1712.0
8 TraesCS3D01G315900 chr3A 87.516 793 59 11 5047 5818 556551873 556552646 0.000000e+00 880.0
9 TraesCS3D01G315900 chr3A 84.113 919 71 28 2210 3104 556548816 556549683 0.000000e+00 819.0
10 TraesCS3D01G315900 chr3A 90.683 483 31 6 4470 4945 556551401 556551876 1.160000e-176 630.0
11 TraesCS3D01G315900 chr3A 90.385 104 10 0 2105 2208 556548738 556548841 3.090000e-28 137.0
12 TraesCS3D01G315900 chr3B 92.099 1329 60 29 671 1994 561237445 561236157 0.000000e+00 1831.0
13 TraesCS3D01G315900 chr3B 92.745 703 28 8 3652 4335 561234586 561233888 0.000000e+00 994.0
14 TraesCS3D01G315900 chr3B 90.400 625 32 11 4331 4945 561233646 561233040 0.000000e+00 797.0
15 TraesCS3D01G315900 chr3B 85.502 807 57 26 5047 5818 561233043 561232262 0.000000e+00 787.0
16 TraesCS3D01G315900 chr3B 85.262 726 58 30 2033 2747 561236164 561235477 0.000000e+00 702.0
17 TraesCS3D01G315900 chr3B 94.702 453 17 4 3208 3653 561235132 561234680 0.000000e+00 697.0
18 TraesCS3D01G315900 chr3B 92.373 354 14 3 2787 3127 561235482 561235129 5.720000e-135 492.0
19 TraesCS3D01G315900 chr3B 97.345 113 3 0 4939 5051 70582103 70582215 6.500000e-45 193.0
20 TraesCS3D01G315900 chr3B 95.798 119 4 1 4937 5055 779534219 779534336 2.340000e-44 191.0
21 TraesCS3D01G315900 chr3B 96.491 114 4 0 4942 5055 750136324 750136211 8.410000e-44 189.0
22 TraesCS3D01G315900 chr5D 96.418 670 21 3 1 667 318819215 318818546 0.000000e+00 1101.0
23 TraesCS3D01G315900 chr5D 96.241 665 21 3 1 662 539720391 539721054 0.000000e+00 1086.0
24 TraesCS3D01G315900 chr5D 87.283 173 21 1 6083 6255 383645485 383645314 5.020000e-46 196.0
25 TraesCS3D01G315900 chr2D 95.789 665 23 5 1 660 314360119 314360783 0.000000e+00 1068.0
26 TraesCS3D01G315900 chr2D 97.297 111 3 0 4938 5048 513035481 513035591 8.410000e-44 189.0
27 TraesCS3D01G315900 chr2D 81.910 199 34 2 1147 1344 180876999 180877196 3.940000e-37 167.0
28 TraesCS3D01G315900 chr7D 95.633 664 26 3 1 661 94404432 94403769 0.000000e+00 1062.0
29 TraesCS3D01G315900 chr7D 87.405 262 30 3 5897 6156 619809782 619809522 1.340000e-76 298.0
30 TraesCS3D01G315900 chr7D 92.547 161 12 0 6191 6351 619809517 619809357 1.380000e-56 231.0
31 TraesCS3D01G315900 chr7D 96.491 114 3 1 4938 5051 555213444 555213332 3.020000e-43 187.0
32 TraesCS3D01G315900 chr4A 95.764 661 24 4 1 658 597455790 597456449 0.000000e+00 1062.0
33 TraesCS3D01G315900 chr4A 95.764 661 24 4 1 658 597634666 597635325 0.000000e+00 1062.0
34 TraesCS3D01G315900 chr1A 95.489 665 27 3 1 662 27190104 27189440 0.000000e+00 1059.0
35 TraesCS3D01G315900 chr1A 95.482 664 26 3 1 661 549500958 549500296 0.000000e+00 1057.0
36 TraesCS3D01G315900 chr1A 85.581 645 60 21 1059 1695 511481604 511482223 0.000000e+00 645.0
37 TraesCS3D01G315900 chr1A 97.345 113 3 0 4939 5051 387511352 387511464 6.500000e-45 193.0
38 TraesCS3D01G315900 chr1A 90.909 99 7 2 3118 3214 589902709 589902807 1.440000e-26 132.0
39 TraesCS3D01G315900 chr1D 85.068 663 65 22 1041 1695 414706852 414707488 0.000000e+00 645.0
40 TraesCS3D01G315900 chr1D 96.512 86 3 0 3124 3209 120537616 120537701 6.640000e-30 143.0
41 TraesCS3D01G315900 chr1B 84.766 663 64 26 1041 1695 560176029 560176662 1.160000e-176 630.0
42 TraesCS3D01G315900 chr1B 89.610 462 37 6 5893 6351 327571351 327570898 1.540000e-160 577.0
43 TraesCS3D01G315900 chr7B 89.542 459 41 7 5897 6351 715483911 715483456 5.520000e-160 575.0
44 TraesCS3D01G315900 chr7B 89.542 459 41 7 5897 6351 715486780 715486325 5.520000e-160 575.0
45 TraesCS3D01G315900 chr7B 89.542 459 41 6 5897 6351 715489648 715489193 5.520000e-160 575.0
46 TraesCS3D01G315900 chr7B 89.325 459 42 7 5897 6351 715492518 715492063 2.570000e-158 569.0
47 TraesCS3D01G315900 chr7B 92.784 97 6 1 3117 3212 103891534 103891438 8.590000e-29 139.0
48 TraesCS3D01G315900 chr7B 96.774 31 1 0 5858 5888 460543181 460543151 1.200000e-02 52.8
49 TraesCS3D01G315900 chrUn 89.325 459 42 7 5897 6351 336501438 336501893 2.570000e-158 569.0
50 TraesCS3D01G315900 chr5A 88.482 191 19 3 5887 6075 560108265 560108454 1.780000e-55 228.0
51 TraesCS3D01G315900 chr6A 88.021 192 22 1 5884 6075 337244083 337243893 6.410000e-55 226.0
52 TraesCS3D01G315900 chr6A 94.915 118 5 1 4935 5052 596351533 596351417 3.910000e-42 183.0
53 TraesCS3D01G315900 chr6A 91.667 48 3 1 5842 5888 554507772 554507819 1.480000e-06 65.8
54 TraesCS3D01G315900 chr6D 89.286 168 14 4 6079 6245 431160664 431160828 2.320000e-49 207.0
55 TraesCS3D01G315900 chr6D 97.297 111 3 0 4942 5052 3196488 3196378 8.410000e-44 189.0
56 TraesCS3D01G315900 chr6B 88.690 168 15 4 6079 6245 650598536 650598700 1.080000e-47 202.0
57 TraesCS3D01G315900 chr6B 91.111 45 3 1 5842 5885 46741049 46741093 6.880000e-05 60.2
58 TraesCS3D01G315900 chr6B 88.889 45 3 2 5845 5888 459810453 459810410 3.000000e-03 54.7
59 TraesCS3D01G315900 chr2A 82.915 199 32 2 1147 1344 195309356 195309553 1.820000e-40 178.0
60 TraesCS3D01G315900 chr2A 93.333 90 4 2 3126 3215 79308226 79308139 1.440000e-26 132.0
61 TraesCS3D01G315900 chr2A 92.308 91 5 2 3124 3213 78845862 78845773 1.860000e-25 128.0
62 TraesCS3D01G315900 chr2B 86.061 165 20 3 1147 1309 237343639 237343802 2.350000e-39 174.0
63 TraesCS3D01G315900 chr2B 88.000 50 3 3 5842 5889 664653873 664653921 8.890000e-04 56.5
64 TraesCS3D01G315900 chr5B 95.402 87 4 0 3123 3209 364139504 364139418 8.590000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G315900 chr3D 429303100 429309450 6350 True 11729.0 11729 100.000000 1 6351 1 chr3D.!!$R3 6350
1 TraesCS3D01G315900 chr3D 551075038 551075698 660 False 1074.0 1074 96.067000 1 658 1 chr3D.!!$F3 657
2 TraesCS3D01G315900 chr3A 556547409 556552646 5237 False 1043.0 2080 89.948333 664 5818 6 chr3A.!!$F1 5154
3 TraesCS3D01G315900 chr3B 561232262 561237445 5183 True 900.0 1831 90.440429 671 5818 7 chr3B.!!$R2 5147
4 TraesCS3D01G315900 chr5D 318818546 318819215 669 True 1101.0 1101 96.418000 1 667 1 chr5D.!!$R1 666
5 TraesCS3D01G315900 chr5D 539720391 539721054 663 False 1086.0 1086 96.241000 1 662 1 chr5D.!!$F1 661
6 TraesCS3D01G315900 chr2D 314360119 314360783 664 False 1068.0 1068 95.789000 1 660 1 chr2D.!!$F2 659
7 TraesCS3D01G315900 chr7D 94403769 94404432 663 True 1062.0 1062 95.633000 1 661 1 chr7D.!!$R1 660
8 TraesCS3D01G315900 chr4A 597455790 597456449 659 False 1062.0 1062 95.764000 1 658 1 chr4A.!!$F1 657
9 TraesCS3D01G315900 chr4A 597634666 597635325 659 False 1062.0 1062 95.764000 1 658 1 chr4A.!!$F2 657
10 TraesCS3D01G315900 chr1A 27189440 27190104 664 True 1059.0 1059 95.489000 1 662 1 chr1A.!!$R1 661
11 TraesCS3D01G315900 chr1A 549500296 549500958 662 True 1057.0 1057 95.482000 1 661 1 chr1A.!!$R2 660
12 TraesCS3D01G315900 chr1A 511481604 511482223 619 False 645.0 645 85.581000 1059 1695 1 chr1A.!!$F2 636
13 TraesCS3D01G315900 chr1D 414706852 414707488 636 False 645.0 645 85.068000 1041 1695 1 chr1D.!!$F2 654
14 TraesCS3D01G315900 chr1B 560176029 560176662 633 False 630.0 630 84.766000 1041 1695 1 chr1B.!!$F1 654
15 TraesCS3D01G315900 chr7B 715483456 715492518 9062 True 573.5 575 89.487750 5897 6351 4 chr7B.!!$R3 454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 923 0.033796 CAATCAGCATCACCCCACCT 60.034 55.0 0.00 0.0 0.0 4.00 F
903 924 0.257039 AATCAGCATCACCCCACCTC 59.743 55.0 0.00 0.0 0.0 3.85 F
904 925 0.915872 ATCAGCATCACCCCACCTCA 60.916 55.0 0.00 0.0 0.0 3.86 F
2024 2091 0.109597 GGCGCTGACAAGTTTGATGG 60.110 55.0 7.64 0.0 0.0 3.51 F
3138 3247 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.0 0.00 0.0 0.0 4.37 F
3210 3319 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.0 0.00 0.0 0.0 2.73 F
4953 5881 0.252197 GGCAACATACTCCCTCCGTT 59.748 55.0 0.00 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2072 0.109597 CCATCAAACTTGTCAGCGCC 60.110 55.0 2.29 0.0 0.0 6.53 R
2007 2074 0.592637 TGCCATCAAACTTGTCAGCG 59.407 50.0 0.00 0.0 0.0 5.18 R
2052 2119 0.987294 CCTCCAACAGTCCAGTCCAT 59.013 55.0 0.00 0.0 0.0 3.41 R
3191 3300 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.0 3.28 R
5039 5967 0.042881 ACCCTCCCAAGTACTCCCTC 59.957 60.0 0.00 0.0 0.0 4.30 R
5040 5968 1.400941 TACCCTCCCAAGTACTCCCT 58.599 55.0 0.00 0.0 0.0 4.20 R
6297 15875 0.323725 ATCCAGTTCCACATGCCACC 60.324 55.0 0.00 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 5.404366 GCATCGTTCGTTATCCTGCTAATAA 59.596 40.000 0.00 0.00 0.00 1.40
128 129 2.167693 CACGCAGAAACTATGGGAGGTA 59.832 50.000 0.00 0.00 34.87 3.08
171 172 5.901552 TGCACAATATGATCGTAGAAGACA 58.098 37.500 0.41 0.00 43.58 3.41
210 211 4.819630 TGTACGATCAAGGCTTTCAGTTTT 59.180 37.500 0.00 0.00 0.00 2.43
234 235 2.498167 GTGAGAATGTTGTGCCTGAGT 58.502 47.619 0.00 0.00 0.00 3.41
240 241 3.719268 ATGTTGTGCCTGAGTATGGAA 57.281 42.857 0.00 0.00 0.00 3.53
337 339 7.492020 GCAAAATGATTTGGTTGAGCATATGTA 59.508 33.333 4.29 0.00 44.93 2.29
567 571 0.882927 GCGCTGCCGACCCATATAAA 60.883 55.000 0.00 0.00 36.29 1.40
608 612 2.973600 CGGCCGACCCAAACGAAA 60.974 61.111 24.07 0.00 0.00 3.46
635 642 1.619526 CGAAATCGCCGTCCGTTTGA 61.620 55.000 0.00 0.00 38.35 2.69
810 831 0.666913 AGCTCAGTTGCAAGCACAAG 59.333 50.000 10.57 1.16 41.06 3.16
812 833 0.318445 CTCAGTTGCAAGCACAAGGC 60.318 55.000 0.00 0.00 45.30 4.35
839 860 1.282157 CGACCATTCCCTTCCTTCCTT 59.718 52.381 0.00 0.00 0.00 3.36
895 916 1.560505 AAACCCCCAATCAGCATCAC 58.439 50.000 0.00 0.00 0.00 3.06
896 917 0.324645 AACCCCCAATCAGCATCACC 60.325 55.000 0.00 0.00 0.00 4.02
897 918 1.456331 CCCCCAATCAGCATCACCC 60.456 63.158 0.00 0.00 0.00 4.61
898 919 1.456331 CCCCAATCAGCATCACCCC 60.456 63.158 0.00 0.00 0.00 4.95
899 920 1.307309 CCCAATCAGCATCACCCCA 59.693 57.895 0.00 0.00 0.00 4.96
900 921 1.039233 CCCAATCAGCATCACCCCAC 61.039 60.000 0.00 0.00 0.00 4.61
901 922 1.039233 CCAATCAGCATCACCCCACC 61.039 60.000 0.00 0.00 0.00 4.61
902 923 0.033796 CAATCAGCATCACCCCACCT 60.034 55.000 0.00 0.00 0.00 4.00
903 924 0.257039 AATCAGCATCACCCCACCTC 59.743 55.000 0.00 0.00 0.00 3.85
904 925 0.915872 ATCAGCATCACCCCACCTCA 60.916 55.000 0.00 0.00 0.00 3.86
930 966 2.555199 GATCAAATCCACCACCGAGAG 58.445 52.381 0.00 0.00 0.00 3.20
1025 1062 1.918800 CCAACTCCTCCTCCCCGTT 60.919 63.158 0.00 0.00 0.00 4.44
1823 1878 2.089980 CTGCTTTCCTGAACTCCATGG 58.910 52.381 4.97 4.97 0.00 3.66
1827 1882 4.079253 GCTTTCCTGAACTCCATGGTTTA 58.921 43.478 12.58 0.00 0.00 2.01
1829 1884 5.185828 GCTTTCCTGAACTCCATGGTTTATT 59.814 40.000 12.58 1.90 0.00 1.40
1834 1889 7.410174 TCCTGAACTCCATGGTTTATTATTGT 58.590 34.615 12.58 0.00 0.00 2.71
1904 1961 9.408069 GATTTACTACACTAGTGTATGGTATGC 57.592 37.037 30.78 18.39 44.15 3.14
1924 1988 8.601476 GGTATGCAACAAAACTAGTATAGACAC 58.399 37.037 0.00 0.00 42.77 3.67
1966 2033 6.524933 CAGTACTAAGATGTTTCAGTCACTCG 59.475 42.308 0.00 0.00 0.00 4.18
1983 2050 2.482721 ACTCGGCGATTAAAACTGTTGG 59.517 45.455 11.27 0.00 0.00 3.77
1997 2064 5.675684 AACTGTTGGTCTTTTGTTGGAAT 57.324 34.783 0.00 0.00 0.00 3.01
2000 2067 5.874261 ACTGTTGGTCTTTTGTTGGAATTTG 59.126 36.000 0.00 0.00 0.00 2.32
2001 2068 5.799213 TGTTGGTCTTTTGTTGGAATTTGT 58.201 33.333 0.00 0.00 0.00 2.83
2002 2069 6.936279 TGTTGGTCTTTTGTTGGAATTTGTA 58.064 32.000 0.00 0.00 0.00 2.41
2003 2070 7.386851 TGTTGGTCTTTTGTTGGAATTTGTAA 58.613 30.769 0.00 0.00 0.00 2.41
2004 2071 8.043710 TGTTGGTCTTTTGTTGGAATTTGTAAT 58.956 29.630 0.00 0.00 0.00 1.89
2005 2072 8.334632 GTTGGTCTTTTGTTGGAATTTGTAATG 58.665 33.333 0.00 0.00 0.00 1.90
2006 2073 6.989169 TGGTCTTTTGTTGGAATTTGTAATGG 59.011 34.615 0.00 0.00 0.00 3.16
2007 2074 6.073276 GGTCTTTTGTTGGAATTTGTAATGGC 60.073 38.462 0.00 0.00 0.00 4.40
2008 2075 5.694006 TCTTTTGTTGGAATTTGTAATGGCG 59.306 36.000 0.00 0.00 0.00 5.69
2009 2076 2.953020 TGTTGGAATTTGTAATGGCGC 58.047 42.857 0.00 0.00 0.00 6.53
2010 2077 2.560542 TGTTGGAATTTGTAATGGCGCT 59.439 40.909 7.64 0.00 0.00 5.92
2011 2078 2.923020 GTTGGAATTTGTAATGGCGCTG 59.077 45.455 7.64 0.00 0.00 5.18
2012 2079 2.441410 TGGAATTTGTAATGGCGCTGA 58.559 42.857 7.64 0.00 0.00 4.26
2013 2080 2.163412 TGGAATTTGTAATGGCGCTGAC 59.837 45.455 7.64 0.63 0.00 3.51
2014 2081 2.163412 GGAATTTGTAATGGCGCTGACA 59.837 45.455 7.64 3.60 0.00 3.58
2015 2082 3.366883 GGAATTTGTAATGGCGCTGACAA 60.367 43.478 7.64 9.93 0.00 3.18
2016 2083 2.987413 TTTGTAATGGCGCTGACAAG 57.013 45.000 7.64 0.00 33.60 3.16
2017 2084 1.890876 TTGTAATGGCGCTGACAAGT 58.109 45.000 7.64 0.00 0.00 3.16
2018 2085 1.890876 TGTAATGGCGCTGACAAGTT 58.109 45.000 7.64 0.00 0.00 2.66
2019 2086 2.226330 TGTAATGGCGCTGACAAGTTT 58.774 42.857 7.64 0.00 0.00 2.66
2020 2087 2.031245 TGTAATGGCGCTGACAAGTTTG 60.031 45.455 7.64 0.00 0.00 2.93
2021 2088 1.317613 AATGGCGCTGACAAGTTTGA 58.682 45.000 7.64 0.00 0.00 2.69
2022 2089 1.538047 ATGGCGCTGACAAGTTTGAT 58.462 45.000 7.64 0.00 0.00 2.57
2023 2090 0.592637 TGGCGCTGACAAGTTTGATG 59.407 50.000 7.64 0.00 0.00 3.07
2024 2091 0.109597 GGCGCTGACAAGTTTGATGG 60.110 55.000 7.64 0.00 0.00 3.51
2025 2092 0.730494 GCGCTGACAAGTTTGATGGC 60.730 55.000 0.00 0.00 0.00 4.40
2026 2093 0.592637 CGCTGACAAGTTTGATGGCA 59.407 50.000 0.00 0.00 33.92 4.92
2027 2094 1.200716 CGCTGACAAGTTTGATGGCAT 59.799 47.619 0.00 0.00 34.72 4.40
2028 2095 2.419673 CGCTGACAAGTTTGATGGCATA 59.580 45.455 0.00 0.00 34.72 3.14
2029 2096 3.119884 CGCTGACAAGTTTGATGGCATAA 60.120 43.478 0.00 0.00 34.72 1.90
2030 2097 4.439153 CGCTGACAAGTTTGATGGCATAAT 60.439 41.667 0.00 0.00 34.72 1.28
2031 2098 5.413499 GCTGACAAGTTTGATGGCATAATT 58.587 37.500 0.00 0.00 34.72 1.40
2032 2099 5.870978 GCTGACAAGTTTGATGGCATAATTT 59.129 36.000 0.00 0.00 34.72 1.82
2033 2100 6.369615 GCTGACAAGTTTGATGGCATAATTTT 59.630 34.615 0.00 0.00 34.72 1.82
2034 2101 7.545265 GCTGACAAGTTTGATGGCATAATTTTA 59.455 33.333 0.00 0.00 34.72 1.52
2035 2102 9.421806 CTGACAAGTTTGATGGCATAATTTTAA 57.578 29.630 0.00 0.00 34.72 1.52
2042 2109 8.667463 GTTTGATGGCATAATTTTAACTTGCAT 58.333 29.630 0.00 0.00 35.04 3.96
2062 2129 4.932200 GCATAATACTGCTATGGACTGGAC 59.068 45.833 0.00 0.00 39.12 4.02
2064 2131 4.679373 AATACTGCTATGGACTGGACTG 57.321 45.455 0.00 0.00 0.00 3.51
2074 2141 1.420138 GGACTGGACTGTTGGAGGAAA 59.580 52.381 0.00 0.00 0.00 3.13
2085 2152 6.180472 ACTGTTGGAGGAAATGGTAATACTG 58.820 40.000 0.00 0.00 0.00 2.74
2101 2168 9.421399 TGGTAATACTGTGATATTCTCTTCTCA 57.579 33.333 0.00 0.00 0.00 3.27
2180 2248 9.726438 AGATTTGATAAAGGCACATAGGTATAC 57.274 33.333 0.00 0.00 0.00 1.47
2181 2249 9.502091 GATTTGATAAAGGCACATAGGTATACA 57.498 33.333 5.01 0.00 0.00 2.29
2182 2250 9.860650 ATTTGATAAAGGCACATAGGTATACAA 57.139 29.630 5.01 0.00 0.00 2.41
2183 2251 9.688091 TTTGATAAAGGCACATAGGTATACAAA 57.312 29.630 5.01 0.00 0.00 2.83
2184 2252 9.688091 TTGATAAAGGCACATAGGTATACAAAA 57.312 29.630 5.01 0.00 0.00 2.44
2185 2253 9.688091 TGATAAAGGCACATAGGTATACAAAAA 57.312 29.630 5.01 0.00 0.00 1.94
2190 2258 9.651913 AAGGCACATAGGTATACAAAAATTTTG 57.348 29.630 16.06 16.06 0.00 2.44
2191 2259 9.030452 AGGCACATAGGTATACAAAAATTTTGA 57.970 29.630 23.39 8.84 0.00 2.69
2192 2260 9.646427 GGCACATAGGTATACAAAAATTTTGAA 57.354 29.630 23.39 7.05 0.00 2.69
2279 2347 9.720769 AATGAAAATGAATCAAATTCTCTGCTT 57.279 25.926 11.05 0.00 39.96 3.91
2373 2441 7.540474 TGTTATTTAGGATCTGGGCTAGTAG 57.460 40.000 0.00 0.00 0.00 2.57
2378 2451 6.481434 TTAGGATCTGGGCTAGTAGAAAAC 57.519 41.667 0.00 0.00 0.00 2.43
2379 2452 4.625963 AGGATCTGGGCTAGTAGAAAACT 58.374 43.478 0.00 0.00 42.62 2.66
2381 2454 5.489278 AGGATCTGGGCTAGTAGAAAACTTT 59.511 40.000 0.00 0.00 39.80 2.66
2382 2455 6.672657 AGGATCTGGGCTAGTAGAAAACTTTA 59.327 38.462 0.00 0.00 39.80 1.85
2384 2457 6.295719 TCTGGGCTAGTAGAAAACTTTAGG 57.704 41.667 0.00 0.00 39.80 2.69
2390 2463 7.879677 GGGCTAGTAGAAAACTTTAGGTTAACA 59.120 37.037 8.10 0.00 39.80 2.41
2518 2598 4.150098 GTCAATGTTAGAGACCGTGTCAAC 59.850 45.833 0.00 2.16 34.60 3.18
2562 2643 3.668447 ACACAGAGGCAGTACATTTCAG 58.332 45.455 0.00 0.00 0.00 3.02
2563 2644 3.071602 ACACAGAGGCAGTACATTTCAGT 59.928 43.478 0.00 0.00 0.00 3.41
2564 2645 4.067896 CACAGAGGCAGTACATTTCAGTT 58.932 43.478 0.00 0.00 0.00 3.16
2565 2646 4.067896 ACAGAGGCAGTACATTTCAGTTG 58.932 43.478 0.00 0.00 0.00 3.16
2566 2647 4.067896 CAGAGGCAGTACATTTCAGTTGT 58.932 43.478 0.00 0.00 0.00 3.32
2567 2648 4.516698 CAGAGGCAGTACATTTCAGTTGTT 59.483 41.667 0.00 0.00 0.00 2.83
2568 2649 5.700832 CAGAGGCAGTACATTTCAGTTGTTA 59.299 40.000 0.00 0.00 0.00 2.41
2569 2650 6.372659 CAGAGGCAGTACATTTCAGTTGTTAT 59.627 38.462 0.00 0.00 0.00 1.89
2570 2651 6.595716 AGAGGCAGTACATTTCAGTTGTTATC 59.404 38.462 0.00 0.00 0.00 1.75
2571 2652 6.237901 AGGCAGTACATTTCAGTTGTTATCA 58.762 36.000 0.00 0.00 0.00 2.15
2572 2653 6.372659 AGGCAGTACATTTCAGTTGTTATCAG 59.627 38.462 0.00 0.00 0.00 2.90
2573 2654 6.149474 GGCAGTACATTTCAGTTGTTATCAGT 59.851 38.462 0.00 0.00 0.00 3.41
2574 2655 7.237173 GCAGTACATTTCAGTTGTTATCAGTC 58.763 38.462 0.00 0.00 0.00 3.51
2575 2656 7.095229 GCAGTACATTTCAGTTGTTATCAGTCA 60.095 37.037 0.00 0.00 0.00 3.41
2576 2657 8.223769 CAGTACATTTCAGTTGTTATCAGTCAC 58.776 37.037 0.00 0.00 0.00 3.67
2577 2658 8.150945 AGTACATTTCAGTTGTTATCAGTCACT 58.849 33.333 0.00 0.00 0.00 3.41
2578 2659 7.194607 ACATTTCAGTTGTTATCAGTCACTG 57.805 36.000 0.00 0.00 0.00 3.66
2615 2696 7.959175 TGTGTAAGTAATTGTACAAGGAGAGT 58.041 34.615 14.65 0.62 32.23 3.24
2648 2740 8.507470 GATGTTTTACTTGGTGAAGAAACATC 57.493 34.615 18.20 18.20 45.03 3.06
2669 2761 7.783042 ACATCAGGGTAATGAAGAACTACTAC 58.217 38.462 0.00 0.00 31.76 2.73
2685 2778 5.675538 ACTACTACCTCAAATTGGCATCTC 58.324 41.667 0.00 0.00 0.00 2.75
2757 2850 5.415701 TCTGCTGGCTATTAAGGAAAACAAG 59.584 40.000 0.00 0.00 0.00 3.16
2758 2851 4.462483 TGCTGGCTATTAAGGAAAACAAGG 59.538 41.667 0.00 0.00 0.00 3.61
2765 2858 7.267857 GCTATTAAGGAAAACAAGGATGCAAT 58.732 34.615 0.00 0.00 0.00 3.56
2766 2859 7.765819 GCTATTAAGGAAAACAAGGATGCAATT 59.234 33.333 0.00 0.00 0.00 2.32
2770 2863 9.838339 TTAAGGAAAACAAGGATGCAATTAAAA 57.162 25.926 0.00 0.00 0.00 1.52
2771 2864 8.744568 AAGGAAAACAAGGATGCAATTAAAAA 57.255 26.923 0.00 0.00 0.00 1.94
2926 3024 7.948278 ATCTCTTATGCAACCGTAATAGTTC 57.052 36.000 0.00 0.00 0.00 3.01
3012 3121 7.201830 GGGGAGTTTCTATGGAAGCTATTTTTC 60.202 40.741 8.14 0.00 41.80 2.29
3013 3122 7.558081 GGGAGTTTCTATGGAAGCTATTTTTCT 59.442 37.037 8.14 0.00 41.80 2.52
3014 3123 8.961634 GGAGTTTCTATGGAAGCTATTTTTCTT 58.038 33.333 8.14 0.00 41.80 2.52
3102 3211 7.171653 GCTAAATTCAGAAGAGGGGCTATATT 58.828 38.462 0.00 0.00 0.00 1.28
3129 3238 9.895138 TTGTTAGTTACCTAAATTGATACTCCC 57.105 33.333 0.00 0.00 35.00 4.30
3131 3240 9.761504 GTTAGTTACCTAAATTGATACTCCCTC 57.238 37.037 0.00 0.00 35.00 4.30
3132 3241 7.376335 AGTTACCTAAATTGATACTCCCTCC 57.624 40.000 0.00 0.00 0.00 4.30
3133 3242 4.957684 ACCTAAATTGATACTCCCTCCG 57.042 45.455 0.00 0.00 0.00 4.63
3134 3243 4.296056 ACCTAAATTGATACTCCCTCCGT 58.704 43.478 0.00 0.00 0.00 4.69
3135 3244 4.344390 ACCTAAATTGATACTCCCTCCGTC 59.656 45.833 0.00 0.00 0.00 4.79
3136 3245 3.840124 AAATTGATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
3137 3246 1.718280 ATTGATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
3138 3247 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3139 3248 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
3140 3249 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
3141 3250 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
3142 3251 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3143 3252 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3144 3253 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3145 3254 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3146 3255 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3147 3256 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3148 3257 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3149 3258 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3150 3259 2.671396 CTCCGTCCCAAAATAAGTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
3151 3260 2.037511 TCCGTCCCAAAATAAGTGTCGT 59.962 45.455 0.00 0.00 0.00 4.34
3152 3261 2.809696 CCGTCCCAAAATAAGTGTCGTT 59.190 45.455 0.00 0.00 0.00 3.85
3153 3262 3.364565 CCGTCCCAAAATAAGTGTCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
3154 3263 3.495377 CGTCCCAAAATAAGTGTCGTTGA 59.505 43.478 0.00 0.00 0.00 3.18
3155 3264 4.153475 CGTCCCAAAATAAGTGTCGTTGAT 59.847 41.667 0.00 0.00 0.00 2.57
3156 3265 5.334569 CGTCCCAAAATAAGTGTCGTTGATT 60.335 40.000 0.00 0.00 0.00 2.57
3157 3266 6.443792 GTCCCAAAATAAGTGTCGTTGATTT 58.556 36.000 0.00 0.00 0.00 2.17
3158 3267 7.571613 CGTCCCAAAATAAGTGTCGTTGATTTA 60.572 37.037 0.00 0.00 0.00 1.40
3159 3268 7.749126 GTCCCAAAATAAGTGTCGTTGATTTAG 59.251 37.037 0.00 0.00 0.00 1.85
3160 3269 7.446013 TCCCAAAATAAGTGTCGTTGATTTAGT 59.554 33.333 0.00 0.00 0.00 2.24
3161 3270 8.723311 CCCAAAATAAGTGTCGTTGATTTAGTA 58.277 33.333 0.00 0.00 0.00 1.82
3162 3271 9.537848 CCAAAATAAGTGTCGTTGATTTAGTAC 57.462 33.333 0.00 0.00 0.00 2.73
3166 3275 9.485206 AATAAGTGTCGTTGATTTAGTACAACT 57.515 29.630 0.00 0.00 42.53 3.16
3167 3276 7.781548 AAGTGTCGTTGATTTAGTACAACTT 57.218 32.000 0.00 0.00 42.53 2.66
3168 3277 7.781548 AGTGTCGTTGATTTAGTACAACTTT 57.218 32.000 0.00 0.00 42.53 2.66
3169 3278 7.627340 AGTGTCGTTGATTTAGTACAACTTTG 58.373 34.615 0.00 0.00 42.53 2.77
3170 3279 7.279313 AGTGTCGTTGATTTAGTACAACTTTGT 59.721 33.333 0.00 0.00 42.53 2.83
3171 3280 8.542132 GTGTCGTTGATTTAGTACAACTTTGTA 58.458 33.333 0.00 0.00 42.53 2.41
3186 3295 8.248117 ACAACTTTGTACTAAATCACCGATAC 57.752 34.615 0.00 0.00 40.16 2.24
3187 3296 8.092687 ACAACTTTGTACTAAATCACCGATACT 58.907 33.333 0.00 0.00 40.16 2.12
3188 3297 8.932791 CAACTTTGTACTAAATCACCGATACTT 58.067 33.333 0.00 0.00 0.00 2.24
3196 3305 8.446599 ACTAAATCACCGATACTTATTTTGGG 57.553 34.615 0.00 0.00 0.00 4.12
3197 3306 8.269317 ACTAAATCACCGATACTTATTTTGGGA 58.731 33.333 0.00 0.00 0.00 4.37
3198 3307 6.937436 AATCACCGATACTTATTTTGGGAC 57.063 37.500 0.00 0.00 0.00 4.46
3199 3308 4.435425 TCACCGATACTTATTTTGGGACG 58.565 43.478 0.00 0.00 0.00 4.79
3200 3309 3.558418 CACCGATACTTATTTTGGGACGG 59.442 47.826 0.00 0.00 42.78 4.79
3201 3310 3.451902 ACCGATACTTATTTTGGGACGGA 59.548 43.478 0.00 0.00 40.78 4.69
3202 3311 4.056050 CCGATACTTATTTTGGGACGGAG 58.944 47.826 0.00 0.00 40.16 4.63
3203 3312 4.056050 CGATACTTATTTTGGGACGGAGG 58.944 47.826 0.00 0.00 0.00 4.30
3204 3313 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
3205 3314 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
3206 3315 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3207 3316 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3208 3317 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3209 3318 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3210 3319 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3211 3320 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
3212 3321 1.002069 TGGGACGGAGGGAGTACTTA 58.998 55.000 0.00 0.00 0.00 2.24
3213 3322 1.358787 TGGGACGGAGGGAGTACTTAA 59.641 52.381 0.00 0.00 0.00 1.85
3214 3323 2.023695 TGGGACGGAGGGAGTACTTAAT 60.024 50.000 0.00 0.00 0.00 1.40
3281 3574 3.755112 TGTCCATGGTTAACACGAAGA 57.245 42.857 12.58 0.00 0.00 2.87
3358 3652 3.620488 TGAAAGCTTTAATCCGCCTCAT 58.380 40.909 12.68 0.00 0.00 2.90
3471 3767 5.612725 TGCTTTTGAAATTCTGAAGGGTT 57.387 34.783 9.62 0.00 0.00 4.11
3615 3916 9.567776 TTGAGTGGAATTAAGAAGTTCATACAA 57.432 29.630 5.50 0.00 0.00 2.41
3640 3941 6.000219 TCAAGAGAAGGACAAGAGAAAATGG 59.000 40.000 0.00 0.00 0.00 3.16
3641 3942 5.574970 AGAGAAGGACAAGAGAAAATGGT 57.425 39.130 0.00 0.00 0.00 3.55
3760 4156 8.524870 AACAAGGAAAATCATCAAGAAATTCG 57.475 30.769 0.00 0.00 0.00 3.34
3829 4225 4.281688 CCTTTATAAGGTGCAATGATGGGG 59.718 45.833 0.00 0.00 43.95 4.96
3830 4226 2.386829 ATAAGGTGCAATGATGGGGG 57.613 50.000 0.00 0.00 0.00 5.40
3903 4299 4.060205 CACCCTTTCTTTGATTGCCTTTG 58.940 43.478 0.00 0.00 0.00 2.77
4017 4423 6.036577 TGCTTCACACTACACTTATCATCA 57.963 37.500 0.00 0.00 0.00 3.07
4108 4525 5.380043 CCATGTATCCAGTTCATAGCCTTT 58.620 41.667 0.00 0.00 0.00 3.11
4109 4526 6.533730 CCATGTATCCAGTTCATAGCCTTTA 58.466 40.000 0.00 0.00 0.00 1.85
4110 4527 7.170965 CCATGTATCCAGTTCATAGCCTTTAT 58.829 38.462 0.00 0.00 0.00 1.40
4121 4538 6.747414 TCATAGCCTTTATACACCTGTCAT 57.253 37.500 0.00 0.00 0.00 3.06
4239 4656 4.496175 GCAGTTGCCAAAAATTTCCACTTG 60.496 41.667 0.00 0.00 34.31 3.16
4242 4659 4.478206 TGCCAAAAATTTCCACTTGTCA 57.522 36.364 0.00 0.00 0.00 3.58
4245 4662 6.586344 TGCCAAAAATTTCCACTTGTCATTA 58.414 32.000 0.00 0.00 0.00 1.90
4364 5032 6.567602 ACCAGTAAGGCTATCAGAATTCTT 57.432 37.500 4.86 0.00 43.14 2.52
4455 5124 3.762288 GGAGGGTAAAGGTTTCACATTCC 59.238 47.826 0.00 0.00 0.00 3.01
4490 5407 6.016360 TGGTCTTTGTGAATATTGGTCTGTTG 60.016 38.462 0.00 0.00 0.00 3.33
4587 5507 1.553690 GGGCTACTGACAAGGGCTCA 61.554 60.000 0.00 0.00 30.28 4.26
4602 5522 1.478654 GGCTCAAACCCAGGTTCTTCA 60.479 52.381 1.78 0.00 37.35 3.02
4603 5523 2.519013 GCTCAAACCCAGGTTCTTCAT 58.481 47.619 1.78 0.00 37.35 2.57
4604 5524 2.229784 GCTCAAACCCAGGTTCTTCATG 59.770 50.000 1.78 0.00 37.35 3.07
4605 5525 2.229784 CTCAAACCCAGGTTCTTCATGC 59.770 50.000 1.78 0.00 37.35 4.06
4607 5527 1.915141 AACCCAGGTTCTTCATGCAG 58.085 50.000 0.00 0.00 32.09 4.41
4608 5528 0.773644 ACCCAGGTTCTTCATGCAGT 59.226 50.000 0.00 0.00 0.00 4.40
4609 5529 1.171308 CCCAGGTTCTTCATGCAGTG 58.829 55.000 0.00 0.00 0.00 3.66
4610 5530 0.524862 CCAGGTTCTTCATGCAGTGC 59.475 55.000 8.58 8.58 0.00 4.40
4618 5540 2.803155 TTCATGCAGTGCGACCCCTC 62.803 60.000 11.20 0.00 0.00 4.30
4640 5562 3.490348 GCTGTATATTGTTCCCCATGCT 58.510 45.455 0.00 0.00 0.00 3.79
4651 5573 1.379916 CCCATGCTTGTCAGGGTCA 59.620 57.895 0.00 0.00 44.83 4.02
4730 5653 1.520342 GATCTGCGTCCCTGCTGTC 60.520 63.158 0.00 0.00 35.55 3.51
4738 5661 3.625897 CCCTGCTGTCGTGGGTGA 61.626 66.667 0.00 0.00 36.32 4.02
4856 5782 8.738645 AAGTAAATTCTCCCTATAAACAGCAG 57.261 34.615 0.00 0.00 0.00 4.24
4882 5808 7.098074 AGTTGTAGGATGTGCTAAGTAGTAC 57.902 40.000 0.09 0.09 39.06 2.73
4883 5809 6.890814 AGTTGTAGGATGTGCTAAGTAGTACT 59.109 38.462 0.00 0.00 39.30 2.73
4884 5810 8.051535 AGTTGTAGGATGTGCTAAGTAGTACTA 58.948 37.037 2.50 0.00 39.30 1.82
4885 5811 8.344098 GTTGTAGGATGTGCTAAGTAGTACTAG 58.656 40.741 1.87 3.24 39.30 2.57
4886 5812 7.571919 TGTAGGATGTGCTAAGTAGTACTAGT 58.428 38.462 1.87 3.18 39.30 2.57
4887 5813 8.708378 TGTAGGATGTGCTAAGTAGTACTAGTA 58.292 37.037 10.68 0.00 39.30 1.82
4951 5879 1.904771 TGGCAACATACTCCCTCCG 59.095 57.895 0.00 0.00 46.17 4.63
4952 5880 0.907704 TGGCAACATACTCCCTCCGT 60.908 55.000 0.00 0.00 46.17 4.69
4953 5881 0.252197 GGCAACATACTCCCTCCGTT 59.748 55.000 0.00 0.00 0.00 4.44
4954 5882 1.339727 GGCAACATACTCCCTCCGTTT 60.340 52.381 0.00 0.00 0.00 3.60
4955 5883 1.737793 GCAACATACTCCCTCCGTTTG 59.262 52.381 0.00 0.00 0.00 2.93
4956 5884 2.356135 CAACATACTCCCTCCGTTTGG 58.644 52.381 0.00 0.00 0.00 3.28
4957 5885 1.946984 ACATACTCCCTCCGTTTGGA 58.053 50.000 0.00 0.00 43.88 3.53
4958 5886 2.262637 ACATACTCCCTCCGTTTGGAA 58.737 47.619 0.00 0.00 45.87 3.53
4959 5887 2.844348 ACATACTCCCTCCGTTTGGAAT 59.156 45.455 0.00 0.00 45.87 3.01
4960 5888 3.265995 ACATACTCCCTCCGTTTGGAATT 59.734 43.478 0.00 0.00 45.87 2.17
4961 5889 4.472108 ACATACTCCCTCCGTTTGGAATTA 59.528 41.667 0.00 0.00 45.87 1.40
4962 5890 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
4963 5891 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
4964 5892 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
4965 5893 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
4966 5894 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
4967 5895 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
4968 5896 4.324267 CCTCCGTTTGGAATTACTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
4969 5897 4.392138 CCTCCGTTTGGAATTACTTGTCTC 59.608 45.833 0.00 0.00 45.87 3.36
4970 5898 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
4971 5899 3.991773 CCGTTTGGAATTACTTGTCTCGA 59.008 43.478 0.00 0.00 37.49 4.04
4972 5900 4.449743 CCGTTTGGAATTACTTGTCTCGAA 59.550 41.667 0.00 0.00 37.49 3.71
4973 5901 5.049954 CCGTTTGGAATTACTTGTCTCGAAA 60.050 40.000 0.00 0.00 37.49 3.46
4974 5902 6.423862 CGTTTGGAATTACTTGTCTCGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
4975 5903 7.075741 CGTTTGGAATTACTTGTCTCGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
4976 5904 7.059488 CGTTTGGAATTACTTGTCTCGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
4977 5905 6.494893 TGGAATTACTTGTCTCGAAAATGG 57.505 37.500 0.00 0.00 0.00 3.16
4978 5906 6.234920 TGGAATTACTTGTCTCGAAAATGGA 58.765 36.000 0.00 0.00 0.00 3.41
4979 5907 6.884295 TGGAATTACTTGTCTCGAAAATGGAT 59.116 34.615 0.00 0.00 0.00 3.41
4980 5908 7.148255 TGGAATTACTTGTCTCGAAAATGGATG 60.148 37.037 0.00 0.00 0.00 3.51
4981 5909 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
4982 5910 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
4983 5911 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
4984 5912 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
4985 5913 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
4986 5914 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
4987 5915 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
4988 5916 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
4989 5917 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
4990 5918 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
4991 5919 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
4992 5920 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
4993 5921 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
5018 5946 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
5019 5947 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
5020 5948 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
5021 5949 3.921021 GTCTAGATACATCCATTTCCGCG 59.079 47.826 0.00 0.00 0.00 6.46
5022 5950 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
5023 5951 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
5024 5952 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
5025 5953 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
5026 5954 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
5027 5955 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
5028 5956 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
5029 5957 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
5030 5958 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
5031 5959 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
5032 5960 3.754323 TCCATTTCCGCGACAAGTAATTT 59.246 39.130 8.23 0.00 0.00 1.82
5033 5961 4.095610 CCATTTCCGCGACAAGTAATTTC 58.904 43.478 8.23 0.00 0.00 2.17
5034 5962 3.443054 TTTCCGCGACAAGTAATTTCG 57.557 42.857 8.23 4.05 35.82 3.46
5035 5963 2.350899 TCCGCGACAAGTAATTTCGA 57.649 45.000 8.23 0.00 34.62 3.71
5036 5964 2.674954 TCCGCGACAAGTAATTTCGAA 58.325 42.857 8.23 0.00 34.62 3.71
5037 5965 2.409378 TCCGCGACAAGTAATTTCGAAC 59.591 45.455 8.23 0.00 34.62 3.95
5038 5966 2.405736 CGCGACAAGTAATTTCGAACG 58.594 47.619 0.00 0.00 34.62 3.95
5039 5967 2.754478 GCGACAAGTAATTTCGAACGG 58.246 47.619 0.00 0.00 34.62 4.44
5040 5968 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
5041 5969 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
5042 5970 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
5043 5971 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
5044 5972 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
5045 5973 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
5046 5974 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
5047 5975 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
5048 5976 2.955477 ATTTCGAACGGAGGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
5049 5977 1.915141 TTTCGAACGGAGGGAGTACT 58.085 50.000 0.00 0.00 0.00 2.73
5073 6001 2.952310 GGAGGGTAATGGTTTCAGATGC 59.048 50.000 0.00 0.00 0.00 3.91
5150 6078 3.135994 GGAACAAACCAAGCTTACTCGA 58.864 45.455 0.00 0.00 0.00 4.04
5228 6156 2.355108 GCTCTGAACTCCCTTGTATGCA 60.355 50.000 0.00 0.00 0.00 3.96
5265 6211 2.910199 TCAGTTGCTGCCTGATATGTC 58.090 47.619 4.75 0.00 34.12 3.06
5284 6230 5.366829 TGTCAGATGCTGTTTCATTTGAG 57.633 39.130 0.00 0.00 37.97 3.02
5291 6237 7.220875 CAGATGCTGTTTCATTTGAGATTCATG 59.779 37.037 0.00 0.00 32.22 3.07
5320 6266 1.086696 GATCGCTAAGTTGGCTTGCA 58.913 50.000 9.70 0.00 36.22 4.08
5324 6270 1.400242 CGCTAAGTTGGCTTGCAACTC 60.400 52.381 9.70 0.00 41.49 3.01
5406 6373 1.153429 GGCTTGTGTACCTAGGCGG 60.153 63.158 9.30 0.00 39.35 6.13
5413 6380 2.443390 TACCTAGGCGGTCCCTGC 60.443 66.667 9.30 0.00 44.93 4.85
5417 6384 2.123597 TAGGCGGTCCCTGCGTAT 60.124 61.111 0.00 0.00 45.91 3.06
5423 6390 1.384989 CGGTCCCTGCGTATCTGAGT 61.385 60.000 0.00 0.00 0.00 3.41
5450 6417 1.765314 ACTCTGTATCCAGCATCCACC 59.235 52.381 0.00 0.00 38.66 4.61
5454 6421 0.250467 GTATCCAGCATCCACCGCAT 60.250 55.000 0.00 0.00 0.00 4.73
5457 6424 2.475466 CCAGCATCCACCGCATGAC 61.475 63.158 0.00 0.00 0.00 3.06
5472 6439 1.136169 CATGACCGTGCGCATATCATG 60.136 52.381 30.30 30.30 40.36 3.07
5473 6440 0.879839 TGACCGTGCGCATATCATGG 60.880 55.000 15.91 7.48 44.23 3.66
5477 6444 1.220529 CGTGCGCATATCATGGACTT 58.779 50.000 15.91 0.00 0.00 3.01
5511 6478 1.910580 CTTTAGGGCCGGGCTCTCAA 61.911 60.000 27.87 20.32 39.37 3.02
5536 6503 1.491668 GGGGGTCTTTGTTGGTTTGT 58.508 50.000 0.00 0.00 0.00 2.83
5596 6563 7.607607 AGATTGAACTATTTACTGTGTGCATGA 59.392 33.333 0.00 0.00 0.00 3.07
5631 6598 6.884280 ATGAACCTCTCTTGTTTTGTAAGG 57.116 37.500 0.00 0.00 0.00 2.69
5643 6610 2.150014 TTGTAAGGCCAGGCTTCCCC 62.150 60.000 12.43 0.00 0.00 4.81
5674 6644 6.104665 GTGTACCTGTTGTATTCTTCCCTAC 58.895 44.000 0.00 0.00 0.00 3.18
5683 6653 6.374417 TGTATTCTTCCCTACTTTTCTGCT 57.626 37.500 0.00 0.00 0.00 4.24
5689 6659 4.657814 TCCCTACTTTTCTGCTTTGGAT 57.342 40.909 0.00 0.00 0.00 3.41
5690 6660 5.772393 TCCCTACTTTTCTGCTTTGGATA 57.228 39.130 0.00 0.00 0.00 2.59
5691 6661 5.497474 TCCCTACTTTTCTGCTTTGGATAC 58.503 41.667 0.00 0.00 0.00 2.24
5692 6662 5.250774 TCCCTACTTTTCTGCTTTGGATACT 59.749 40.000 0.00 0.00 37.61 2.12
5704 6674 5.941647 TGCTTTGGATACTTACTTGGGTAAC 59.058 40.000 0.00 0.00 34.61 2.50
5707 6677 3.451902 TGGATACTTACTTGGGTAACGGG 59.548 47.826 0.00 0.00 34.61 5.28
5708 6678 3.452264 GGATACTTACTTGGGTAACGGGT 59.548 47.826 0.00 0.00 34.61 5.28
5709 6679 2.845363 ACTTACTTGGGTAACGGGTG 57.155 50.000 0.00 0.00 34.61 4.61
5710 6680 1.271001 ACTTACTTGGGTAACGGGTGC 60.271 52.381 0.00 0.00 34.61 5.01
5711 6681 0.763652 TTACTTGGGTAACGGGTGCA 59.236 50.000 0.00 0.00 33.52 4.57
5712 6682 0.985760 TACTTGGGTAACGGGTGCAT 59.014 50.000 0.00 0.00 37.60 3.96
5713 6683 0.608035 ACTTGGGTAACGGGTGCATG 60.608 55.000 0.00 0.00 37.60 4.06
5714 6684 0.608035 CTTGGGTAACGGGTGCATGT 60.608 55.000 0.00 0.00 37.60 3.21
5715 6685 0.178987 TTGGGTAACGGGTGCATGTT 60.179 50.000 0.00 0.00 37.60 2.71
5716 6686 0.178987 TGGGTAACGGGTGCATGTTT 60.179 50.000 7.16 0.00 37.60 2.83
5717 6687 1.073444 TGGGTAACGGGTGCATGTTTA 59.927 47.619 7.16 0.00 37.60 2.01
5718 6688 1.469703 GGGTAACGGGTGCATGTTTAC 59.530 52.381 7.16 5.02 37.60 2.01
5719 6689 2.152830 GGTAACGGGTGCATGTTTACA 58.847 47.619 7.16 0.00 0.00 2.41
5720 6690 2.750712 GGTAACGGGTGCATGTTTACAT 59.249 45.455 7.16 0.00 36.96 2.29
5776 6746 5.700373 GTGTCCAAATAAATGCAATGTTGGT 59.300 36.000 14.10 0.00 37.40 3.67
5787 6757 4.808558 TGCAATGTTGGTATGCTTCTTTC 58.191 39.130 0.00 0.00 40.66 2.62
5790 6760 5.404946 CAATGTTGGTATGCTTCTTTCTGG 58.595 41.667 0.00 0.00 0.00 3.86
5804 6774 0.455410 TTCTGGCATTTACCGCATGC 59.545 50.000 7.91 7.91 45.47 4.06
5811 6781 2.033299 GCATTTACCGCATGCTACATGT 59.967 45.455 17.13 2.69 43.26 3.21
5818 6788 2.032054 CCGCATGCTACATGTTGTTAGG 59.968 50.000 17.13 0.20 0.00 2.69
5819 6789 2.539547 CGCATGCTACATGTTGTTAGGC 60.540 50.000 17.13 8.31 0.00 3.93
5820 6790 2.684881 GCATGCTACATGTTGTTAGGCT 59.315 45.455 11.37 0.00 0.00 4.58
5821 6791 3.129287 GCATGCTACATGTTGTTAGGCTT 59.871 43.478 11.37 0.00 0.00 4.35
5822 6792 4.380867 GCATGCTACATGTTGTTAGGCTTT 60.381 41.667 11.37 0.00 0.00 3.51
5823 6793 4.764679 TGCTACATGTTGTTAGGCTTTG 57.235 40.909 2.30 0.00 0.00 2.77
5824 6794 4.141287 TGCTACATGTTGTTAGGCTTTGT 58.859 39.130 2.30 0.00 0.00 2.83
5825 6795 5.309638 TGCTACATGTTGTTAGGCTTTGTA 58.690 37.500 2.30 0.00 0.00 2.41
5826 6796 5.943416 TGCTACATGTTGTTAGGCTTTGTAT 59.057 36.000 2.30 0.00 0.00 2.29
5827 6797 7.106890 TGCTACATGTTGTTAGGCTTTGTATA 58.893 34.615 2.30 0.00 0.00 1.47
5828 6798 7.608376 TGCTACATGTTGTTAGGCTTTGTATAA 59.392 33.333 2.30 0.00 0.00 0.98
5829 6799 8.621286 GCTACATGTTGTTAGGCTTTGTATAAT 58.379 33.333 2.30 0.00 0.00 1.28
5830 6800 9.935682 CTACATGTTGTTAGGCTTTGTATAATG 57.064 33.333 2.30 0.00 0.00 1.90
5831 6801 7.257722 ACATGTTGTTAGGCTTTGTATAATGC 58.742 34.615 0.00 1.96 36.52 3.56
5832 6802 7.122650 ACATGTTGTTAGGCTTTGTATAATGCT 59.877 33.333 9.43 0.54 37.20 3.79
5833 6803 8.620416 CATGTTGTTAGGCTTTGTATAATGCTA 58.380 33.333 9.43 0.00 37.20 3.49
5834 6804 8.208718 TGTTGTTAGGCTTTGTATAATGCTAG 57.791 34.615 9.43 0.00 37.20 3.42
5835 6805 8.044309 TGTTGTTAGGCTTTGTATAATGCTAGA 58.956 33.333 9.43 0.00 37.20 2.43
5836 6806 9.057089 GTTGTTAGGCTTTGTATAATGCTAGAT 57.943 33.333 9.43 0.00 37.20 1.98
5837 6807 8.607441 TGTTAGGCTTTGTATAATGCTAGATG 57.393 34.615 9.43 0.00 37.20 2.90
5838 6808 8.210946 TGTTAGGCTTTGTATAATGCTAGATGT 58.789 33.333 9.43 0.00 37.20 3.06
5839 6809 9.057089 GTTAGGCTTTGTATAATGCTAGATGTT 57.943 33.333 9.43 0.00 37.20 2.71
5840 6810 9.627123 TTAGGCTTTGTATAATGCTAGATGTTT 57.373 29.630 9.43 0.00 37.20 2.83
5841 6811 8.159344 AGGCTTTGTATAATGCTAGATGTTTC 57.841 34.615 9.43 0.00 37.20 2.78
5842 6812 7.995488 AGGCTTTGTATAATGCTAGATGTTTCT 59.005 33.333 9.43 0.00 37.20 2.52
5843 6813 8.624776 GGCTTTGTATAATGCTAGATGTTTCTT 58.375 33.333 9.43 0.00 37.20 2.52
5874 6844 8.742554 ATAAATTGAGTTTTTCTTAAGCACCG 57.257 30.769 0.00 0.00 0.00 4.94
5875 6845 6.385649 AATTGAGTTTTTCTTAAGCACCGA 57.614 33.333 0.00 0.00 0.00 4.69
5876 6846 6.575162 ATTGAGTTTTTCTTAAGCACCGAT 57.425 33.333 0.00 0.00 0.00 4.18
5877 6847 5.356882 TGAGTTTTTCTTAAGCACCGATG 57.643 39.130 0.00 0.00 0.00 3.84
5894 6864 7.482654 CACCGATGCTTATTTCTATGAAAGA 57.517 36.000 0.00 0.00 0.00 2.52
5895 6865 7.919690 CACCGATGCTTATTTCTATGAAAGAA 58.080 34.615 1.18 1.18 42.62 2.52
5978 6948 9.643735 TTCTTCCTTATCTAACCCTAAGTCTAG 57.356 37.037 0.00 0.00 0.00 2.43
6023 6993 5.285798 TCCGTCCATTTTAAGCTTTAACG 57.714 39.130 3.20 1.70 0.00 3.18
6024 6994 4.996122 TCCGTCCATTTTAAGCTTTAACGA 59.004 37.500 3.20 0.00 0.00 3.85
6047 12754 8.287503 ACGATGTTAAATGTCACCTAAAAAGAC 58.712 33.333 0.00 0.00 0.00 3.01
6049 12756 7.279750 TGTTAAATGTCACCTAAAAAGACCC 57.720 36.000 0.00 0.00 0.00 4.46
6060 12767 5.102956 ACCTAAAAAGACCCTTTTACCCCTT 60.103 40.000 5.27 0.00 31.15 3.95
6061 12768 5.245301 CCTAAAAAGACCCTTTTACCCCTTG 59.755 44.000 5.27 0.00 31.15 3.61
6075 12782 0.822944 CCCTTGTGTGGCATGTGACA 60.823 55.000 0.00 0.00 0.00 3.58
6076 12783 0.594602 CCTTGTGTGGCATGTGACAG 59.405 55.000 0.00 0.00 30.83 3.51
6078 12785 2.156917 CTTGTGTGGCATGTGACAGAT 58.843 47.619 0.00 0.00 30.83 2.90
6079 12786 2.275134 TGTGTGGCATGTGACAGATT 57.725 45.000 0.00 0.00 30.83 2.40
6081 12788 2.293955 TGTGTGGCATGTGACAGATTTG 59.706 45.455 0.00 0.00 30.83 2.32
6082 12789 2.553602 GTGTGGCATGTGACAGATTTGA 59.446 45.455 0.00 0.00 30.83 2.69
6083 12790 3.192001 GTGTGGCATGTGACAGATTTGAT 59.808 43.478 0.00 0.00 30.83 2.57
6097 12806 4.030913 AGATTTGATACTCCCTCCGTTCA 58.969 43.478 0.00 0.00 0.00 3.18
6109 12818 6.099845 ACTCCCTCCGTTCATGAATATAAGTT 59.900 38.462 12.12 0.00 0.00 2.66
6162 12871 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
6289 15867 7.644986 AAAAAGACACGTTTTCATTGTCAAA 57.355 28.000 3.95 0.00 41.83 2.69
6297 15875 4.620982 GTTTTCATTGTCAAACCCCTCAG 58.379 43.478 0.00 0.00 0.00 3.35
6325 15903 0.687757 TGGAACTGGATCCTCCTCCG 60.688 60.000 14.23 0.00 40.35 4.63
6331 15909 0.902531 TGGATCCTCCTCCGACAAAC 59.097 55.000 14.23 0.00 38.21 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 2.472695 TAGTTTCTGCGTGCTCCAAT 57.527 45.000 0.00 0.00 0.00 3.16
128 129 3.119602 GCATGATCACACAAGCAGTCATT 60.120 43.478 0.00 0.00 0.00 2.57
210 211 1.985159 AGGCACAACATTCTCACCCTA 59.015 47.619 0.00 0.00 0.00 3.53
234 235 4.203226 TCAAATGTTGCCGCTATTCCATA 58.797 39.130 0.00 0.00 0.00 2.74
240 241 1.402968 CTGCTCAAATGTTGCCGCTAT 59.597 47.619 0.00 0.00 0.00 2.97
337 339 2.363306 TTGGTTGCCAACATGAGTCT 57.637 45.000 10.18 0.00 38.75 3.24
608 612 2.413634 GGACGGCGATTTCGTTCATTTT 60.414 45.455 16.62 0.00 41.22 1.82
612 616 2.089936 CGGACGGCGATTTCGTTCA 61.090 57.895 16.62 0.00 41.22 3.18
635 642 3.239253 AACTCCAACGGGCCGACT 61.239 61.111 35.78 16.74 0.00 4.18
810 831 2.175811 GAATGGTCGTGTTGCGCC 59.824 61.111 4.18 0.00 41.07 6.53
812 833 1.234615 AAGGGAATGGTCGTGTTGCG 61.235 55.000 0.00 0.00 43.01 4.85
822 843 1.640670 TGGAAGGAAGGAAGGGAATGG 59.359 52.381 0.00 0.00 0.00 3.16
823 844 2.947695 GCTGGAAGGAAGGAAGGGAATG 60.948 54.545 0.00 0.00 0.00 2.67
824 845 1.286257 GCTGGAAGGAAGGAAGGGAAT 59.714 52.381 0.00 0.00 0.00 3.01
825 846 0.698818 GCTGGAAGGAAGGAAGGGAA 59.301 55.000 0.00 0.00 0.00 3.97
826 847 1.208165 GGCTGGAAGGAAGGAAGGGA 61.208 60.000 0.00 0.00 0.00 4.20
829 850 0.322906 GTGGGCTGGAAGGAAGGAAG 60.323 60.000 0.00 0.00 0.00 3.46
839 860 2.763902 TCGAGAGAGTGGGCTGGA 59.236 61.111 0.00 0.00 34.84 3.86
896 917 3.480133 GATCCGGGGTGAGGTGGG 61.480 72.222 0.00 0.00 0.00 4.61
897 918 1.847798 TTTGATCCGGGGTGAGGTGG 61.848 60.000 0.00 0.00 0.00 4.61
898 919 0.255890 ATTTGATCCGGGGTGAGGTG 59.744 55.000 0.00 0.00 0.00 4.00
899 920 0.546598 GATTTGATCCGGGGTGAGGT 59.453 55.000 0.00 0.00 0.00 3.85
900 921 0.179018 GGATTTGATCCGGGGTGAGG 60.179 60.000 0.00 0.00 40.13 3.86
901 922 3.403936 GGATTTGATCCGGGGTGAG 57.596 57.895 0.00 0.00 40.13 3.51
930 966 3.069158 TCTCTCGGGTTTATTCCGGAATC 59.931 47.826 32.43 18.33 46.78 2.52
1904 1961 8.926710 CAAGGAGTGTCTATACTAGTTTTGTTG 58.073 37.037 0.00 0.00 0.00 3.33
1924 1988 6.837471 AGTACTGAACTAGTTACCAAGGAG 57.163 41.667 8.42 0.00 40.89 3.69
1966 2033 4.499037 AAGACCAACAGTTTTAATCGCC 57.501 40.909 0.00 0.00 0.00 5.54
1983 2050 6.346518 CGCCATTACAAATTCCAACAAAAGAC 60.347 38.462 0.00 0.00 0.00 3.01
1997 2064 2.226330 ACTTGTCAGCGCCATTACAAA 58.774 42.857 2.29 0.00 31.90 2.83
2000 2067 2.225491 TCAAACTTGTCAGCGCCATTAC 59.775 45.455 2.29 0.00 0.00 1.89
2001 2068 2.499197 TCAAACTTGTCAGCGCCATTA 58.501 42.857 2.29 0.00 0.00 1.90
2002 2069 1.317613 TCAAACTTGTCAGCGCCATT 58.682 45.000 2.29 0.00 0.00 3.16
2003 2070 1.200716 CATCAAACTTGTCAGCGCCAT 59.799 47.619 2.29 0.00 0.00 4.40
2004 2071 0.592637 CATCAAACTTGTCAGCGCCA 59.407 50.000 2.29 0.00 0.00 5.69
2005 2072 0.109597 CCATCAAACTTGTCAGCGCC 60.110 55.000 2.29 0.00 0.00 6.53
2006 2073 0.730494 GCCATCAAACTTGTCAGCGC 60.730 55.000 0.00 0.00 0.00 5.92
2007 2074 0.592637 TGCCATCAAACTTGTCAGCG 59.407 50.000 0.00 0.00 0.00 5.18
2008 2075 4.439305 TTATGCCATCAAACTTGTCAGC 57.561 40.909 0.00 0.00 0.00 4.26
2009 2076 7.894376 AAAATTATGCCATCAAACTTGTCAG 57.106 32.000 0.00 0.00 0.00 3.51
2010 2077 9.202273 GTTAAAATTATGCCATCAAACTTGTCA 57.798 29.630 0.00 0.00 0.00 3.58
2011 2078 9.423061 AGTTAAAATTATGCCATCAAACTTGTC 57.577 29.630 0.00 0.00 0.00 3.18
2012 2079 9.777297 AAGTTAAAATTATGCCATCAAACTTGT 57.223 25.926 0.00 0.00 34.38 3.16
2014 2081 8.720562 GCAAGTTAAAATTATGCCATCAAACTT 58.279 29.630 0.00 0.00 35.62 2.66
2015 2082 7.877097 TGCAAGTTAAAATTATGCCATCAAACT 59.123 29.630 0.00 0.00 36.20 2.66
2016 2083 8.027440 TGCAAGTTAAAATTATGCCATCAAAC 57.973 30.769 0.00 0.00 36.20 2.93
2017 2084 8.789825 ATGCAAGTTAAAATTATGCCATCAAA 57.210 26.923 0.00 0.00 36.20 2.69
2018 2085 9.881649 TTATGCAAGTTAAAATTATGCCATCAA 57.118 25.926 0.00 0.00 36.20 2.57
2042 2109 5.208890 ACAGTCCAGTCCATAGCAGTATTA 58.791 41.667 0.00 0.00 0.00 0.98
2052 2119 0.987294 CCTCCAACAGTCCAGTCCAT 59.013 55.000 0.00 0.00 0.00 3.41
2062 2129 6.094048 CACAGTATTACCATTTCCTCCAACAG 59.906 42.308 0.00 0.00 0.00 3.16
2064 2131 6.177610 TCACAGTATTACCATTTCCTCCAAC 58.822 40.000 0.00 0.00 0.00 3.77
2085 2152 8.729805 AACCTTTCATGAGAAGAGAATATCAC 57.270 34.615 15.13 0.00 34.71 3.06
2198 2266 9.991388 CACAGTTCAACATTTTTGAATTTGATT 57.009 25.926 14.44 0.00 40.12 2.57
2199 2267 9.381033 TCACAGTTCAACATTTTTGAATTTGAT 57.619 25.926 14.44 3.27 40.12 2.57
2200 2268 8.768957 TCACAGTTCAACATTTTTGAATTTGA 57.231 26.923 14.44 9.32 40.12 2.69
2201 2269 9.991388 ATTCACAGTTCAACATTTTTGAATTTG 57.009 25.926 1.61 6.33 40.12 2.32
2203 2271 9.381033 TGATTCACAGTTCAACATTTTTGAATT 57.619 25.926 1.61 0.00 40.12 2.17
2204 2272 8.945481 TGATTCACAGTTCAACATTTTTGAAT 57.055 26.923 1.61 0.00 40.12 2.57
2205 2273 8.768957 TTGATTCACAGTTCAACATTTTTGAA 57.231 26.923 0.00 0.00 36.21 2.69
2206 2274 8.768957 TTTGATTCACAGTTCAACATTTTTGA 57.231 26.923 0.00 0.00 31.87 2.69
2214 2282 7.096312 GCTCAAGAATTTGATTCACAGTTCAAC 60.096 37.037 3.76 0.00 42.19 3.18
2550 2631 8.223769 GTGACTGATAACAACTGAAATGTACTG 58.776 37.037 0.00 0.00 0.00 2.74
2562 2643 5.751243 AACAACCAGTGACTGATAACAAC 57.249 39.130 15.33 0.00 32.44 3.32
2563 2644 6.072728 GCATAACAACCAGTGACTGATAACAA 60.073 38.462 15.33 0.00 32.44 2.83
2564 2645 5.411361 GCATAACAACCAGTGACTGATAACA 59.589 40.000 15.33 0.00 32.44 2.41
2565 2646 5.643777 AGCATAACAACCAGTGACTGATAAC 59.356 40.000 15.33 0.00 32.44 1.89
2566 2647 5.804639 AGCATAACAACCAGTGACTGATAA 58.195 37.500 15.33 0.00 32.44 1.75
2567 2648 5.420725 AGCATAACAACCAGTGACTGATA 57.579 39.130 15.33 0.00 32.44 2.15
2568 2649 4.292186 AGCATAACAACCAGTGACTGAT 57.708 40.909 15.33 0.00 32.44 2.90
2569 2650 3.769739 AGCATAACAACCAGTGACTGA 57.230 42.857 15.33 0.00 32.44 3.41
2570 2651 3.565482 ACAAGCATAACAACCAGTGACTG 59.435 43.478 5.42 5.42 0.00 3.51
2571 2652 3.565482 CACAAGCATAACAACCAGTGACT 59.435 43.478 0.00 0.00 0.00 3.41
2572 2653 3.315191 ACACAAGCATAACAACCAGTGAC 59.685 43.478 0.00 0.00 0.00 3.67
2573 2654 3.550820 ACACAAGCATAACAACCAGTGA 58.449 40.909 0.00 0.00 0.00 3.41
2574 2655 3.988379 ACACAAGCATAACAACCAGTG 57.012 42.857 0.00 0.00 0.00 3.66
2575 2656 5.130350 ACTTACACAAGCATAACAACCAGT 58.870 37.500 0.00 0.00 34.94 4.00
2576 2657 5.689383 ACTTACACAAGCATAACAACCAG 57.311 39.130 0.00 0.00 34.94 4.00
2577 2658 7.753309 ATTACTTACACAAGCATAACAACCA 57.247 32.000 0.00 0.00 34.94 3.67
2578 2659 8.079809 ACAATTACTTACACAAGCATAACAACC 58.920 33.333 0.00 0.00 34.94 3.77
2634 2726 4.715534 TTACCCTGATGTTTCTTCACCA 57.284 40.909 0.00 0.00 0.00 4.17
2648 2740 6.380274 TGAGGTAGTAGTTCTTCATTACCCTG 59.620 42.308 0.00 0.00 32.81 4.45
2669 2761 4.946157 ACAACTAGAGATGCCAATTTGAGG 59.054 41.667 0.00 0.00 0.00 3.86
2685 2778 7.066404 TCTCATGTGCTAACTCTAGACAACTAG 59.934 40.741 0.00 0.00 45.21 2.57
2768 2861 7.875327 ATAACTATCGGCATTACCACTTTTT 57.125 32.000 0.00 0.00 39.03 1.94
2769 2862 9.569122 AATATAACTATCGGCATTACCACTTTT 57.431 29.630 0.00 0.00 39.03 2.27
2770 2863 9.569122 AAATATAACTATCGGCATTACCACTTT 57.431 29.630 0.00 0.00 39.03 2.66
2771 2864 9.569122 AAAATATAACTATCGGCATTACCACTT 57.431 29.630 0.00 0.00 39.03 3.16
2772 2865 9.569122 AAAAATATAACTATCGGCATTACCACT 57.431 29.630 0.00 0.00 39.03 4.00
2895 2988 3.975670 CGGTTGCATAAGAGATACGACTC 59.024 47.826 0.00 0.00 37.19 3.36
2986 3092 4.984146 ATAGCTTCCATAGAAACTCCCC 57.016 45.455 0.00 0.00 31.02 4.81
3028 3137 3.941483 GTCACCATGCTTGCTGTATAACT 59.059 43.478 0.00 0.00 0.00 2.24
3087 3196 9.053840 GTAACTAACAAAATATAGCCCCTCTTC 57.946 37.037 0.00 0.00 0.00 2.87
3127 3236 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3128 3237 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3129 3238 2.671396 CGACACTTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
3131 3240 2.419667 ACGACACTTATTTTGGGACGG 58.580 47.619 0.00 0.00 0.00 4.79
3132 3241 3.495377 TCAACGACACTTATTTTGGGACG 59.505 43.478 0.00 0.00 0.00 4.79
3133 3242 5.622770 ATCAACGACACTTATTTTGGGAC 57.377 39.130 0.00 0.00 0.00 4.46
3134 3243 6.642707 AAATCAACGACACTTATTTTGGGA 57.357 33.333 0.00 0.00 0.00 4.37
3135 3244 7.590279 ACTAAATCAACGACACTTATTTTGGG 58.410 34.615 0.00 0.00 0.00 4.12
3136 3245 9.537848 GTACTAAATCAACGACACTTATTTTGG 57.462 33.333 0.00 0.00 0.00 3.28
3140 3249 9.485206 AGTTGTACTAAATCAACGACACTTATT 57.515 29.630 0.00 0.00 45.56 1.40
3141 3250 9.485206 AAGTTGTACTAAATCAACGACACTTAT 57.515 29.630 0.00 0.00 45.56 1.73
3142 3251 8.876275 AAGTTGTACTAAATCAACGACACTTA 57.124 30.769 0.00 0.00 45.56 2.24
3143 3252 7.781548 AAGTTGTACTAAATCAACGACACTT 57.218 32.000 0.00 0.00 45.56 3.16
3144 3253 7.279313 ACAAAGTTGTACTAAATCAACGACACT 59.721 33.333 0.00 0.00 45.56 3.55
3145 3254 7.404203 ACAAAGTTGTACTAAATCAACGACAC 58.596 34.615 0.00 0.00 45.56 3.67
3146 3255 7.542534 ACAAAGTTGTACTAAATCAACGACA 57.457 32.000 0.00 0.00 45.56 4.35
3160 3269 9.357652 GTATCGGTGATTTAGTACAAAGTTGTA 57.642 33.333 0.00 0.00 42.35 2.41
3161 3270 8.092687 AGTATCGGTGATTTAGTACAAAGTTGT 58.907 33.333 1.75 1.75 44.86 3.32
3162 3271 8.475331 AGTATCGGTGATTTAGTACAAAGTTG 57.525 34.615 0.00 0.00 0.00 3.16
3170 3279 9.550406 CCCAAAATAAGTATCGGTGATTTAGTA 57.450 33.333 0.00 0.00 0.00 1.82
3171 3280 8.269317 TCCCAAAATAAGTATCGGTGATTTAGT 58.731 33.333 0.00 0.00 0.00 2.24
3172 3281 8.557029 GTCCCAAAATAAGTATCGGTGATTTAG 58.443 37.037 0.00 0.00 0.00 1.85
3173 3282 7.225145 CGTCCCAAAATAAGTATCGGTGATTTA 59.775 37.037 0.00 0.00 0.00 1.40
3174 3283 6.037830 CGTCCCAAAATAAGTATCGGTGATTT 59.962 38.462 0.00 0.00 0.00 2.17
3175 3284 5.526111 CGTCCCAAAATAAGTATCGGTGATT 59.474 40.000 0.00 0.00 0.00 2.57
3176 3285 5.054477 CGTCCCAAAATAAGTATCGGTGAT 58.946 41.667 0.00 0.00 0.00 3.06
3177 3286 4.435425 CGTCCCAAAATAAGTATCGGTGA 58.565 43.478 0.00 0.00 0.00 4.02
3178 3287 3.558418 CCGTCCCAAAATAAGTATCGGTG 59.442 47.826 0.00 0.00 0.00 4.94
3179 3288 3.451902 TCCGTCCCAAAATAAGTATCGGT 59.548 43.478 0.00 0.00 37.26 4.69
3180 3289 4.056050 CTCCGTCCCAAAATAAGTATCGG 58.944 47.826 0.00 0.00 37.29 4.18
3181 3290 4.056050 CCTCCGTCCCAAAATAAGTATCG 58.944 47.826 0.00 0.00 0.00 2.92
3182 3291 4.102054 TCCCTCCGTCCCAAAATAAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
3183 3292 4.042174 TCCCTCCGTCCCAAAATAAGTAT 58.958 43.478 0.00 0.00 0.00 2.12
3184 3293 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
3185 3294 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3186 3295 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3187 3296 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3188 3297 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3189 3298 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3190 3299 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3191 3300 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3192 3301 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3193 3302 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3194 3303 2.149973 TTAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
3195 3304 3.703052 TGAATTAAGTACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
3196 3305 4.996788 TGAATTAAGTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
3197 3306 4.161754 CCTTGAATTAAGTACTCCCTCCGT 59.838 45.833 0.00 0.00 34.45 4.69
3198 3307 4.404715 TCCTTGAATTAAGTACTCCCTCCG 59.595 45.833 0.00 0.00 34.45 4.63
3199 3308 5.661759 TCTCCTTGAATTAAGTACTCCCTCC 59.338 44.000 0.00 0.00 34.45 4.30
3200 3309 6.793505 TCTCCTTGAATTAAGTACTCCCTC 57.206 41.667 0.00 0.00 34.45 4.30
3201 3310 7.403231 TGATTCTCCTTGAATTAAGTACTCCCT 59.597 37.037 0.00 0.00 44.70 4.20
3202 3311 7.496263 GTGATTCTCCTTGAATTAAGTACTCCC 59.504 40.741 0.00 0.00 44.70 4.30
3203 3312 8.041323 TGTGATTCTCCTTGAATTAAGTACTCC 58.959 37.037 0.00 0.00 44.70 3.85
3204 3313 9.606631 ATGTGATTCTCCTTGAATTAAGTACTC 57.393 33.333 0.00 0.00 44.70 2.59
3205 3314 9.606631 GATGTGATTCTCCTTGAATTAAGTACT 57.393 33.333 0.00 0.00 44.70 2.73
3206 3315 9.606631 AGATGTGATTCTCCTTGAATTAAGTAC 57.393 33.333 0.00 0.00 44.70 2.73
3208 3317 8.954350 CAAGATGTGATTCTCCTTGAATTAAGT 58.046 33.333 0.00 0.00 44.70 2.24
3209 3318 8.404000 CCAAGATGTGATTCTCCTTGAATTAAG 58.596 37.037 0.00 0.00 44.70 1.85
3210 3319 7.340232 CCCAAGATGTGATTCTCCTTGAATTAA 59.660 37.037 0.00 0.00 44.70 1.40
3211 3320 6.830324 CCCAAGATGTGATTCTCCTTGAATTA 59.170 38.462 0.00 0.00 44.70 1.40
3212 3321 5.655532 CCCAAGATGTGATTCTCCTTGAATT 59.344 40.000 0.00 0.00 44.70 2.17
3214 3323 4.289410 TCCCAAGATGTGATTCTCCTTGAA 59.711 41.667 0.00 0.00 37.10 2.69
3388 3684 7.821652 TCTTATATGAAAAACGCATTCCACAA 58.178 30.769 0.00 0.00 0.00 3.33
3440 3736 7.663827 TCAGAATTTCAAAAGCATGAGTTGAT 58.336 30.769 0.00 0.00 31.66 2.57
3476 3772 7.385267 CAGGAGAAATTCTAGAGATACATGGG 58.615 42.308 0.00 0.00 0.00 4.00
3479 3775 6.686630 CGCAGGAGAAATTCTAGAGATACAT 58.313 40.000 0.00 0.00 0.00 2.29
3480 3776 5.508153 GCGCAGGAGAAATTCTAGAGATACA 60.508 44.000 0.30 0.00 0.00 2.29
3615 3916 6.658391 CCATTTTCTCTTGTCCTTCTCTTGAT 59.342 38.462 0.00 0.00 0.00 2.57
3640 3941 9.605275 TCAAAGCAAGGATATATATAGCATGAC 57.395 33.333 10.05 0.00 0.00 3.06
3816 4212 1.682854 CACATACCCCCATCATTGCAC 59.317 52.381 0.00 0.00 0.00 4.57
3829 4225 3.003480 GAGAGGAAACTGCACACATACC 58.997 50.000 0.00 0.00 44.43 2.73
3830 4226 3.003480 GGAGAGGAAACTGCACACATAC 58.997 50.000 0.00 0.00 44.43 2.39
3903 4299 4.913784 TGGGTAAAAGTAACAGATGACCC 58.086 43.478 0.00 0.00 44.71 4.46
4017 4423 5.012354 ACAATGACCCAATCAAAAATCTGCT 59.988 36.000 0.00 0.00 41.93 4.24
4109 4526 8.840321 GCATACATAGAAAAATGACAGGTGTAT 58.160 33.333 0.00 0.00 32.29 2.29
4110 4527 8.046708 AGCATACATAGAAAAATGACAGGTGTA 58.953 33.333 0.00 0.00 0.00 2.90
4121 4538 7.828717 TCATCTGTTCCAGCATACATAGAAAAA 59.171 33.333 0.00 0.00 0.00 1.94
4133 4550 1.352017 ACCATGTCATCTGTTCCAGCA 59.648 47.619 0.00 0.00 0.00 4.41
4167 4584 3.711704 TGGTCCTGAACTAATGAGATCCC 59.288 47.826 0.00 0.00 0.00 3.85
4169 4586 5.105146 AGTGTGGTCCTGAACTAATGAGATC 60.105 44.000 0.00 0.00 0.00 2.75
4170 4587 4.780021 AGTGTGGTCCTGAACTAATGAGAT 59.220 41.667 0.00 0.00 0.00 2.75
4229 4646 4.403432 CAGCCCATAATGACAAGTGGAAAT 59.597 41.667 5.87 0.00 33.53 2.17
4239 4656 1.406539 CACTTGCCAGCCCATAATGAC 59.593 52.381 0.00 0.00 0.00 3.06
4242 4659 0.397535 CCCACTTGCCAGCCCATAAT 60.398 55.000 0.00 0.00 0.00 1.28
4245 4662 3.267233 TCCCACTTGCCAGCCCAT 61.267 61.111 0.00 0.00 0.00 4.00
4455 5124 3.653344 TCACAAAGACCAGTCATCTTCG 58.347 45.455 0.00 0.00 35.31 3.79
4523 5443 0.567968 CGCTAATCGCACGTTCTCTG 59.432 55.000 0.00 0.00 39.08 3.35
4587 5507 2.242043 CTGCATGAAGAACCTGGGTTT 58.758 47.619 6.46 0.00 38.60 3.27
4602 5522 4.457496 CGAGGGGTCGCACTGCAT 62.457 66.667 1.11 0.00 0.00 3.96
4610 5530 1.340248 ACAATATACAGCGAGGGGTCG 59.660 52.381 0.00 0.00 0.00 4.79
4618 5540 2.226437 GCATGGGGAACAATATACAGCG 59.774 50.000 0.00 0.00 0.00 5.18
4624 5546 3.956199 CTGACAAGCATGGGGAACAATAT 59.044 43.478 0.00 0.00 0.00 1.28
4640 5562 0.539438 GCCATTGGTGACCCTGACAA 60.539 55.000 4.26 0.00 0.00 3.18
4651 5573 2.749044 CAGCTCAGCGCCATTGGT 60.749 61.111 2.29 0.00 40.39 3.67
4730 5653 2.590575 AACACGGCTTCACCCACG 60.591 61.111 0.00 0.00 33.26 4.94
4738 5661 2.640581 AAAGGCCCTGAACACGGCTT 62.641 55.000 0.00 4.64 45.01 4.35
4790 5713 0.114364 CTAAACTTGGCCCTTGGGGT 59.886 55.000 7.91 0.00 46.51 4.95
4856 5782 4.473477 ACTTAGCACATCCTACAACTCC 57.527 45.455 0.00 0.00 0.00 3.85
4882 5808 7.930865 AGGCAGATTCTAGCTCAAATTTACTAG 59.069 37.037 12.58 12.58 34.66 2.57
4883 5809 7.796054 AGGCAGATTCTAGCTCAAATTTACTA 58.204 34.615 0.00 0.00 0.00 1.82
4884 5810 6.657875 AGGCAGATTCTAGCTCAAATTTACT 58.342 36.000 0.00 0.00 0.00 2.24
4885 5811 6.934048 AGGCAGATTCTAGCTCAAATTTAC 57.066 37.500 0.00 0.00 0.00 2.01
4886 5812 7.716998 CCTTAGGCAGATTCTAGCTCAAATTTA 59.283 37.037 0.00 0.00 0.00 1.40
4887 5813 6.545298 CCTTAGGCAGATTCTAGCTCAAATTT 59.455 38.462 0.00 0.00 0.00 1.82
4895 5821 4.100189 TGAAGACCTTAGGCAGATTCTAGC 59.900 45.833 0.00 0.00 0.00 3.42
4945 5873 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
4946 5874 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
4947 5875 4.091509 CGAGACAAGTAATTCCAAACGGAG 59.908 45.833 0.00 0.00 32.88 4.63
4948 5876 3.991773 CGAGACAAGTAATTCCAAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
4949 5877 3.991773 TCGAGACAAGTAATTCCAAACGG 59.008 43.478 0.00 0.00 0.00 4.44
4950 5878 5.585500 TTCGAGACAAGTAATTCCAAACG 57.415 39.130 0.00 0.00 0.00 3.60
4951 5879 7.326063 CCATTTTCGAGACAAGTAATTCCAAAC 59.674 37.037 0.00 0.00 0.00 2.93
4952 5880 7.229707 TCCATTTTCGAGACAAGTAATTCCAAA 59.770 33.333 0.00 0.00 0.00 3.28
4953 5881 6.712998 TCCATTTTCGAGACAAGTAATTCCAA 59.287 34.615 0.00 0.00 0.00 3.53
4954 5882 6.234920 TCCATTTTCGAGACAAGTAATTCCA 58.765 36.000 0.00 0.00 0.00 3.53
4955 5883 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
4956 5884 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
4957 5885 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
4958 5886 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
4959 5887 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
4960 5888 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
4961 5889 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
4962 5890 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
4963 5891 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
4964 5892 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
4965 5893 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
4966 5894 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
4967 5895 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
4992 5920 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
4993 5921 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
4994 5922 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
4995 5923 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
4996 5924 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
4997 5925 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
4998 5926 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
4999 5927 3.921021 CGCGGAAATGGATGTATCTAGAC 59.079 47.826 0.00 0.00 0.00 2.59
5000 5928 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
5001 5929 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
5002 5930 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
5003 5931 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
5004 5932 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
5005 5933 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
5006 5934 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
5007 5935 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
5008 5936 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
5009 5937 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
5010 5938 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
5011 5939 3.757745 AATTACTTGTCGCGGAAATGG 57.242 42.857 6.13 0.00 0.00 3.16
5012 5940 3.778718 CGAAATTACTTGTCGCGGAAATG 59.221 43.478 6.13 0.00 0.00 2.32
5013 5941 3.680937 TCGAAATTACTTGTCGCGGAAAT 59.319 39.130 6.13 0.00 34.80 2.17
5014 5942 3.058450 TCGAAATTACTTGTCGCGGAAA 58.942 40.909 6.13 0.00 34.80 3.13
5015 5943 2.674954 TCGAAATTACTTGTCGCGGAA 58.325 42.857 6.13 0.00 34.80 4.30
5016 5944 2.350899 TCGAAATTACTTGTCGCGGA 57.649 45.000 6.13 0.00 34.80 5.54
5017 5945 2.754478 GTTCGAAATTACTTGTCGCGG 58.246 47.619 6.13 0.00 34.80 6.46
5018 5946 2.405736 CGTTCGAAATTACTTGTCGCG 58.594 47.619 0.00 0.00 34.80 5.87
5019 5947 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
5020 5948 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
5021 5949 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
5022 5950 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
5023 5951 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
5024 5952 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
5025 5953 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
5026 5954 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
5027 5955 4.019174 AGTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
5028 5956 2.830321 AGTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
5029 5957 2.454538 AGTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
5030 5958 1.915141 AGTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
5031 5959 1.542915 CAAGTACTCCCTCCGTTCGAA 59.457 52.381 0.00 0.00 0.00 3.71
5032 5960 1.171308 CAAGTACTCCCTCCGTTCGA 58.829 55.000 0.00 0.00 0.00 3.71
5033 5961 0.172803 CCAAGTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
5034 5962 0.535797 CCCAAGTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
5035 5963 0.115745 TCCCAAGTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
5036 5964 0.324460 CTCCCAAGTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
5037 5965 1.043673 CCTCCCAAGTACTCCCTCCG 61.044 65.000 0.00 0.00 0.00 4.63
5038 5966 0.691413 CCCTCCCAAGTACTCCCTCC 60.691 65.000 0.00 0.00 0.00 4.30
5039 5967 0.042881 ACCCTCCCAAGTACTCCCTC 59.957 60.000 0.00 0.00 0.00 4.30
5040 5968 1.400941 TACCCTCCCAAGTACTCCCT 58.599 55.000 0.00 0.00 0.00 4.20
5041 5969 2.259014 TTACCCTCCCAAGTACTCCC 57.741 55.000 0.00 0.00 0.00 4.30
5042 5970 2.438392 CCATTACCCTCCCAAGTACTCC 59.562 54.545 0.00 0.00 0.00 3.85
5043 5971 3.113043 ACCATTACCCTCCCAAGTACTC 58.887 50.000 0.00 0.00 0.00 2.59
5044 5972 3.216230 ACCATTACCCTCCCAAGTACT 57.784 47.619 0.00 0.00 0.00 2.73
5045 5973 4.263594 TGAAACCATTACCCTCCCAAGTAC 60.264 45.833 0.00 0.00 0.00 2.73
5046 5974 3.917629 TGAAACCATTACCCTCCCAAGTA 59.082 43.478 0.00 0.00 0.00 2.24
5047 5975 2.719705 TGAAACCATTACCCTCCCAAGT 59.280 45.455 0.00 0.00 0.00 3.16
5048 5976 3.010138 TCTGAAACCATTACCCTCCCAAG 59.990 47.826 0.00 0.00 0.00 3.61
5049 5977 2.990284 TCTGAAACCATTACCCTCCCAA 59.010 45.455 0.00 0.00 0.00 4.12
5073 6001 3.686726 GCTAATGTTCACAAGGACCAGAG 59.313 47.826 0.00 0.00 0.00 3.35
5150 6078 5.302360 TGTAAACTACTGCGACAAGGAAAT 58.698 37.500 0.00 0.00 0.00 2.17
5228 6156 5.640732 CAACTGAAATAAATAGGTGCGCTT 58.359 37.500 9.73 0.00 0.00 4.68
5236 6182 6.441093 TCAGGCAGCAACTGAAATAAATAG 57.559 37.500 0.00 0.00 41.66 1.73
5265 6211 6.617879 TGAATCTCAAATGAAACAGCATCTG 58.382 36.000 0.00 0.00 37.52 2.90
5284 6230 4.033684 GCGATCAAGTCAAAGCATGAATC 58.966 43.478 0.00 0.00 40.50 2.52
5291 6237 4.398247 CAACTTAGCGATCAAGTCAAAGC 58.602 43.478 0.00 0.00 35.19 3.51
5320 6266 2.135933 GCAGTGAAGTAACAGCGAGTT 58.864 47.619 0.00 3.19 44.27 3.01
5324 6270 1.723542 CTCTGCAGTGAAGTAACAGCG 59.276 52.381 14.67 0.00 35.50 5.18
5406 6373 1.103803 TCACTCAGATACGCAGGGAC 58.896 55.000 0.00 0.00 0.00 4.46
5413 6380 3.856521 CAGAGTTGCTTCACTCAGATACG 59.143 47.826 12.10 0.00 45.08 3.06
5417 6384 4.081972 GGATACAGAGTTGCTTCACTCAGA 60.082 45.833 12.10 0.44 45.08 3.27
5454 6421 0.879839 CCATGATATGCGCACGGTCA 60.880 55.000 14.90 17.85 0.00 4.02
5457 6424 0.601046 AGTCCATGATATGCGCACGG 60.601 55.000 14.90 6.86 0.00 4.94
5472 6439 3.273080 CTGCCGGCAAAGCAAGTCC 62.273 63.158 32.09 0.00 40.35 3.85
5473 6440 2.256461 CTGCCGGCAAAGCAAGTC 59.744 61.111 32.09 0.00 40.35 3.01
5498 6465 4.785453 CCACTTGAGAGCCCGGCC 62.785 72.222 5.55 0.00 0.00 6.13
5511 6478 2.763645 AACAAAGACCCCCGCCACT 61.764 57.895 0.00 0.00 0.00 4.00
5536 6503 5.557325 CGACAACATAAAACATCACACGACA 60.557 40.000 0.00 0.00 0.00 4.35
5573 6540 6.348458 GCTCATGCACACAGTAAATAGTTCAA 60.348 38.462 0.00 0.00 39.41 2.69
5583 6550 3.893326 ATACAGCTCATGCACACAGTA 57.107 42.857 0.00 0.00 42.74 2.74
5584 6551 2.775911 ATACAGCTCATGCACACAGT 57.224 45.000 0.00 0.00 42.74 3.55
5596 6563 7.885399 ACAAGAGAGGTTCATAAAAATACAGCT 59.115 33.333 0.00 0.00 0.00 4.24
5627 6594 1.622442 ATGGGGAAGCCTGGCCTTA 60.622 57.895 16.57 0.00 0.00 2.69
5631 6598 0.825010 CATACATGGGGAAGCCTGGC 60.825 60.000 11.65 11.65 0.00 4.85
5643 6610 8.492673 AAGAATACAACAGGTACACATACATG 57.507 34.615 0.00 0.00 46.31 3.21
5674 6644 7.308435 CCAAGTAAGTATCCAAAGCAGAAAAG 58.692 38.462 0.00 0.00 0.00 2.27
5683 6653 5.490159 CCGTTACCCAAGTAAGTATCCAAA 58.510 41.667 0.00 0.00 39.13 3.28
5689 6659 2.028203 GCACCCGTTACCCAAGTAAGTA 60.028 50.000 0.00 0.00 39.13 2.24
5690 6660 1.271001 GCACCCGTTACCCAAGTAAGT 60.271 52.381 0.00 0.00 39.13 2.24
5691 6661 1.270947 TGCACCCGTTACCCAAGTAAG 60.271 52.381 0.00 0.00 39.13 2.34
5692 6662 0.763652 TGCACCCGTTACCCAAGTAA 59.236 50.000 0.00 0.00 36.08 2.24
5711 6681 7.826252 AGAAATCTAGACAGCACATGTAAACAT 59.174 33.333 0.00 0.00 44.17 2.71
5712 6682 7.118245 CAGAAATCTAGACAGCACATGTAAACA 59.882 37.037 0.00 0.00 44.17 2.83
5713 6683 7.118390 ACAGAAATCTAGACAGCACATGTAAAC 59.882 37.037 0.00 0.00 44.17 2.01
5714 6684 7.161404 ACAGAAATCTAGACAGCACATGTAAA 58.839 34.615 0.00 0.00 44.17 2.01
5715 6685 6.701340 ACAGAAATCTAGACAGCACATGTAA 58.299 36.000 0.00 0.00 44.17 2.41
5716 6686 6.286240 ACAGAAATCTAGACAGCACATGTA 57.714 37.500 0.00 0.00 44.17 2.29
5718 6688 6.760298 ACATACAGAAATCTAGACAGCACATG 59.240 38.462 0.00 0.00 0.00 3.21
5719 6689 6.882656 ACATACAGAAATCTAGACAGCACAT 58.117 36.000 0.00 0.00 0.00 3.21
5720 6690 6.286240 ACATACAGAAATCTAGACAGCACA 57.714 37.500 0.00 0.00 0.00 4.57
5721 6691 7.258441 TGTACATACAGAAATCTAGACAGCAC 58.742 38.462 0.00 0.00 0.00 4.40
5722 6692 7.404671 TGTACATACAGAAATCTAGACAGCA 57.595 36.000 0.00 0.00 0.00 4.41
5732 6702 7.446931 TGGACACAAACATGTACATACAGAAAT 59.553 33.333 8.32 0.00 38.56 2.17
5776 6746 4.335315 CGGTAAATGCCAGAAAGAAGCATA 59.665 41.667 0.00 0.00 46.17 3.14
5787 6757 4.715983 GCATGCGGTAAATGCCAG 57.284 55.556 0.00 0.00 43.78 4.85
5804 6774 9.935682 CATTATACAAAGCCTAACAACATGTAG 57.064 33.333 0.00 0.00 0.00 2.74
5811 6781 9.056005 CATCTAGCATTATACAAAGCCTAACAA 57.944 33.333 0.00 0.00 0.00 2.83
5848 6818 9.191995 CGGTGCTTAAGAAAAACTCAATTTATT 57.808 29.630 6.67 0.00 0.00 1.40
5849 6819 8.573035 TCGGTGCTTAAGAAAAACTCAATTTAT 58.427 29.630 6.67 0.00 0.00 1.40
5850 6820 7.932335 TCGGTGCTTAAGAAAAACTCAATTTA 58.068 30.769 6.67 0.00 0.00 1.40
5851 6821 6.801575 TCGGTGCTTAAGAAAAACTCAATTT 58.198 32.000 6.67 0.00 0.00 1.82
5852 6822 6.385649 TCGGTGCTTAAGAAAAACTCAATT 57.614 33.333 6.67 0.00 0.00 2.32
5853 6823 6.381801 CATCGGTGCTTAAGAAAAACTCAAT 58.618 36.000 6.67 0.00 0.00 2.57
5854 6824 5.757886 CATCGGTGCTTAAGAAAAACTCAA 58.242 37.500 6.67 0.00 0.00 3.02
5855 6825 5.356882 CATCGGTGCTTAAGAAAAACTCA 57.643 39.130 6.67 0.00 0.00 3.41
5869 6839 7.467267 TTCTTTCATAGAAATAAGCATCGGTGC 60.467 37.037 14.24 14.24 44.48 5.01
5870 6840 7.482654 TCTTTCATAGAAATAAGCATCGGTG 57.517 36.000 0.00 0.00 0.00 4.94
5871 6841 8.682936 ATTCTTTCATAGAAATAAGCATCGGT 57.317 30.769 0.00 0.00 45.62 4.69
5872 6842 9.604626 GAATTCTTTCATAGAAATAAGCATCGG 57.395 33.333 0.00 0.00 45.62 4.18
5873 6843 9.604626 GGAATTCTTTCATAGAAATAAGCATCG 57.395 33.333 5.23 0.00 45.62 3.84
5953 6923 9.011860 TCTAGACTTAGGGTTAGATAAGGAAGA 57.988 37.037 0.00 0.00 34.05 2.87
5966 6936 8.625467 AAGGACATAAAATCTAGACTTAGGGT 57.375 34.615 0.00 0.00 0.00 4.34
5978 6948 9.931210 CGGAAGTGTTATAAAGGACATAAAATC 57.069 33.333 0.00 0.00 0.00 2.17
6023 6993 8.027189 GGGTCTTTTTAGGTGACATTTAACATC 58.973 37.037 0.00 0.00 32.84 3.06
6024 6994 7.728532 AGGGTCTTTTTAGGTGACATTTAACAT 59.271 33.333 0.00 0.00 32.84 2.71
6047 12754 1.627864 CCACACAAGGGGTAAAAGGG 58.372 55.000 0.00 0.00 0.00 3.95
6049 12756 1.698506 TGCCACACAAGGGGTAAAAG 58.301 50.000 0.00 0.00 0.00 2.27
6060 12767 2.275134 AATCTGTCACATGCCACACA 57.725 45.000 0.00 0.00 0.00 3.72
6061 12768 2.553602 TCAAATCTGTCACATGCCACAC 59.446 45.455 0.00 0.00 0.00 3.82
6075 12782 4.030913 TGAACGGAGGGAGTATCAAATCT 58.969 43.478 0.00 0.00 36.25 2.40
6076 12783 4.402056 TGAACGGAGGGAGTATCAAATC 57.598 45.455 0.00 0.00 36.25 2.17
6078 12785 3.772572 TCATGAACGGAGGGAGTATCAAA 59.227 43.478 0.00 0.00 36.25 2.69
6079 12786 3.371034 TCATGAACGGAGGGAGTATCAA 58.629 45.455 0.00 0.00 36.25 2.57
6081 12788 4.608948 ATTCATGAACGGAGGGAGTATC 57.391 45.455 11.07 0.00 0.00 2.24
6082 12789 7.455008 ACTTATATTCATGAACGGAGGGAGTAT 59.545 37.037 11.07 4.16 0.00 2.12
6083 12790 6.781014 ACTTATATTCATGAACGGAGGGAGTA 59.219 38.462 11.07 0.00 0.00 2.59
6126 12835 8.916062 TCATTTTGTTCCGTATGTAGGTCTATA 58.084 33.333 0.00 0.00 0.00 1.31
6128 12837 7.093640 ACTCATTTTGTTCCGTATGTAGGTCTA 60.094 37.037 0.00 0.00 0.00 2.59
6129 12838 6.045072 TCATTTTGTTCCGTATGTAGGTCT 57.955 37.500 0.00 0.00 0.00 3.85
6130 12839 5.873164 ACTCATTTTGTTCCGTATGTAGGTC 59.127 40.000 0.00 0.00 0.00 3.85
6131 12840 5.642063 CACTCATTTTGTTCCGTATGTAGGT 59.358 40.000 0.00 0.00 0.00 3.08
6132 12841 5.872617 TCACTCATTTTGTTCCGTATGTAGG 59.127 40.000 0.00 0.00 0.00 3.18
6230 12940 6.567602 ATTAGCATCTACTCCCTCTGTTTT 57.432 37.500 0.00 0.00 0.00 2.43
6297 15875 0.323725 ATCCAGTTCCACATGCCACC 60.324 55.000 0.00 0.00 0.00 4.61
6325 15903 3.754323 TCACCATTCCAATACCGTTTGTC 59.246 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.