Multiple sequence alignment - TraesCS3D01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G315300 chr3D 100.000 2378 0 0 1 2378 428995373 428992996 0.000000e+00 4392.0
1 TraesCS3D01G315300 chr3D 83.752 757 74 28 652 1383 429086053 429085321 0.000000e+00 671.0
2 TraesCS3D01G315300 chr3D 86.247 429 41 8 968 1383 429647482 429647905 1.300000e-122 449.0
3 TraesCS3D01G315300 chr3D 83.565 432 51 12 968 1381 429637256 429637685 1.030000e-103 387.0
4 TraesCS3D01G315300 chr3D 90.865 208 18 1 1176 1383 429044019 429043813 6.470000e-71 278.0
5 TraesCS3D01G315300 chr3D 85.577 208 17 7 927 1126 429044301 429044099 3.100000e-49 206.0
6 TraesCS3D01G315300 chr3D 81.893 243 24 11 642 875 429046957 429046726 1.120000e-43 187.0
7 TraesCS3D01G315300 chr3D 100.000 37 0 0 1298 1334 602716288 602716324 4.240000e-08 69.4
8 TraesCS3D01G315300 chr3A 95.366 971 40 5 1410 2376 556683591 556684560 0.000000e+00 1539.0
9 TraesCS3D01G315300 chr3A 96.849 476 13 1 918 1393 556683134 556683607 0.000000e+00 795.0
10 TraesCS3D01G315300 chr3A 86.029 408 40 5 993 1383 556260857 556260450 2.830000e-114 422.0
11 TraesCS3D01G315300 chr3A 83.299 491 47 20 652 1126 556678106 556678577 1.020000e-113 420.0
12 TraesCS3D01G315300 chr3A 81.136 440 55 15 968 1381 556353996 556353559 6.340000e-86 327.0
13 TraesCS3D01G315300 chr3A 93.151 219 15 0 1176 1394 556678657 556678875 2.950000e-84 322.0
14 TraesCS3D01G315300 chr3A 80.132 453 49 19 968 1381 556340665 556340215 1.380000e-77 300.0
15 TraesCS3D01G315300 chr3B 94.609 742 32 5 658 1393 561039424 561038685 0.000000e+00 1142.0
16 TraesCS3D01G315300 chr3B 89.270 671 46 14 1 659 561040404 561039748 0.000000e+00 817.0
17 TraesCS3D01G315300 chr3B 83.724 768 64 39 652 1383 561045062 561044320 0.000000e+00 669.0
18 TraesCS3D01G315300 chr3B 84.363 518 58 11 1870 2378 561037920 561037417 9.880000e-134 486.0
19 TraesCS3D01G315300 chr3B 84.598 435 44 8 971 1383 561889177 561889610 6.120000e-111 411.0
20 TraesCS3D01G315300 chr3B 80.899 445 50 19 968 1379 561840771 561841213 3.810000e-83 318.0
21 TraesCS3D01G315300 chr3B 83.198 369 28 15 1410 1765 561038701 561038354 8.260000e-80 307.0
22 TraesCS3D01G315300 chr2D 75.982 433 90 7 1955 2378 592399718 592400145 6.660000e-51 211.0
23 TraesCS3D01G315300 chr2D 84.242 165 12 7 1550 1704 593512649 593512489 5.300000e-32 148.0
24 TraesCS3D01G315300 chr2D 92.929 99 6 1 1607 1704 78687989 78687891 2.460000e-30 143.0
25 TraesCS3D01G315300 chr7D 84.706 170 12 6 1545 1704 508611147 508610982 8.800000e-35 158.0
26 TraesCS3D01G315300 chr7A 84.118 170 13 6 1545 1704 578994300 578994135 4.090000e-33 152.0
27 TraesCS3D01G315300 chr7A 84.118 170 12 7 1546 1704 634927683 634927848 1.470000e-32 150.0
28 TraesCS3D01G315300 chr4D 84.242 165 12 5 1550 1704 21147893 21147733 5.300000e-32 148.0
29 TraesCS3D01G315300 chr4D 83.436 163 17 5 1550 1704 463336334 463336494 2.460000e-30 143.0
30 TraesCS3D01G315300 chr4D 83.824 68 5 3 1541 1607 23005221 23005283 2.550000e-05 60.2
31 TraesCS3D01G315300 chr2B 75.275 364 63 15 2023 2378 412060085 412059741 5.300000e-32 148.0
32 TraesCS3D01G315300 chr2B 89.286 56 2 1 1541 1596 10614456 10614507 1.530000e-07 67.6
33 TraesCS3D01G315300 chr4A 84.242 165 10 7 1550 1704 469242898 469243056 1.900000e-31 147.0
34 TraesCS3D01G315300 chr6B 82.081 173 15 8 1543 1704 281335135 281335302 1.480000e-27 134.0
35 TraesCS3D01G315300 chr1A 82.822 163 10 8 1550 1699 560308752 560308595 1.920000e-26 130.0
36 TraesCS3D01G315300 chr5B 87.963 108 12 1 1598 1704 341534094 341534201 2.480000e-25 126.0
37 TraesCS3D01G315300 chr2A 78.857 175 31 2 2209 2377 459801766 459801592 1.930000e-21 113.0
38 TraesCS3D01G315300 chr1D 85.507 69 7 1 1537 1602 483055036 483054968 4.240000e-08 69.4
39 TraesCS3D01G315300 chr1D 88.136 59 2 3 1549 1606 457538972 457538918 5.490000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G315300 chr3D 428992996 428995373 2377 True 4392.000000 4392 100.000000 1 2378 1 chr3D.!!$R1 2377
1 TraesCS3D01G315300 chr3D 429085321 429086053 732 True 671.000000 671 83.752000 652 1383 1 chr3D.!!$R2 731
2 TraesCS3D01G315300 chr3D 429043813 429046957 3144 True 223.666667 278 86.111667 642 1383 3 chr3D.!!$R3 741
3 TraesCS3D01G315300 chr3A 556683134 556684560 1426 False 1167.000000 1539 96.107500 918 2376 2 chr3A.!!$F2 1458
4 TraesCS3D01G315300 chr3A 556678106 556678875 769 False 371.000000 420 88.225000 652 1394 2 chr3A.!!$F1 742
5 TraesCS3D01G315300 chr3B 561037417 561045062 7645 True 684.200000 1142 87.032800 1 2378 5 chr3B.!!$R1 2377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.035439 TCGCTCCCATTTTCCCTCAC 60.035 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 10421 0.394762 ACATGAATGCGGTGCCTCAT 60.395 50.0 0.0 0.0 32.71 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.812499 TAATGTCCGCCTCCTCGC 59.188 61.111 0.00 0.00 0.00 5.03
18 19 1.756950 TAATGTCCGCCTCCTCGCT 60.757 57.895 0.00 0.00 0.00 4.93
19 20 1.735376 TAATGTCCGCCTCCTCGCTC 61.735 60.000 0.00 0.00 0.00 5.03
24 25 3.854669 CGCCTCCTCGCTCCCATT 61.855 66.667 0.00 0.00 0.00 3.16
25 26 2.592308 GCCTCCTCGCTCCCATTT 59.408 61.111 0.00 0.00 0.00 2.32
26 27 1.077429 GCCTCCTCGCTCCCATTTT 60.077 57.895 0.00 0.00 0.00 1.82
27 28 1.098129 GCCTCCTCGCTCCCATTTTC 61.098 60.000 0.00 0.00 0.00 2.29
28 29 0.464554 CCTCCTCGCTCCCATTTTCC 60.465 60.000 0.00 0.00 0.00 3.13
29 30 0.464554 CTCCTCGCTCCCATTTTCCC 60.465 60.000 0.00 0.00 0.00 3.97
30 31 0.914417 TCCTCGCTCCCATTTTCCCT 60.914 55.000 0.00 0.00 0.00 4.20
31 32 0.464554 CCTCGCTCCCATTTTCCCTC 60.465 60.000 0.00 0.00 0.00 4.30
32 33 0.253044 CTCGCTCCCATTTTCCCTCA 59.747 55.000 0.00 0.00 0.00 3.86
33 34 0.035439 TCGCTCCCATTTTCCCTCAC 60.035 55.000 0.00 0.00 0.00 3.51
34 35 1.032114 CGCTCCCATTTTCCCTCACC 61.032 60.000 0.00 0.00 0.00 4.02
35 36 0.332972 GCTCCCATTTTCCCTCACCT 59.667 55.000 0.00 0.00 0.00 4.00
36 37 1.683319 GCTCCCATTTTCCCTCACCTC 60.683 57.143 0.00 0.00 0.00 3.85
37 38 0.618458 TCCCATTTTCCCTCACCTCG 59.382 55.000 0.00 0.00 0.00 4.63
38 39 0.328258 CCCATTTTCCCTCACCTCGT 59.672 55.000 0.00 0.00 0.00 4.18
39 40 1.453155 CCATTTTCCCTCACCTCGTG 58.547 55.000 0.00 0.00 34.45 4.35
40 41 1.453155 CATTTTCCCTCACCTCGTGG 58.547 55.000 0.99 0.99 39.83 4.94
41 42 1.003118 CATTTTCCCTCACCTCGTGGA 59.997 52.381 11.17 0.00 37.04 4.02
42 43 0.395312 TTTTCCCTCACCTCGTGGAC 59.605 55.000 11.17 0.00 37.04 4.02
43 44 0.471211 TTTCCCTCACCTCGTGGACT 60.471 55.000 11.17 0.00 37.04 3.85
44 45 0.898789 TTCCCTCACCTCGTGGACTC 60.899 60.000 11.17 0.00 37.04 3.36
45 46 2.701780 CCCTCACCTCGTGGACTCG 61.702 68.421 11.17 0.00 37.04 4.18
46 47 1.674651 CCTCACCTCGTGGACTCGA 60.675 63.158 11.17 0.52 38.19 4.04
47 48 1.502640 CTCACCTCGTGGACTCGAC 59.497 63.158 11.17 0.00 35.91 4.20
48 49 1.228033 TCACCTCGTGGACTCGACA 60.228 57.895 11.17 0.00 35.91 4.35
49 50 1.210413 CACCTCGTGGACTCGACAG 59.790 63.158 11.17 0.00 35.91 3.51
50 51 1.972223 ACCTCGTGGACTCGACAGG 60.972 63.158 11.17 0.00 35.91 4.00
51 52 1.972223 CCTCGTGGACTCGACAGGT 60.972 63.158 0.00 0.00 35.91 4.00
52 53 1.210413 CTCGTGGACTCGACAGGTG 59.790 63.158 0.00 0.00 35.91 4.00
53 54 2.201436 CTCGTGGACTCGACAGGTGG 62.201 65.000 0.00 0.00 35.91 4.61
54 55 2.657237 GTGGACTCGACAGGTGGG 59.343 66.667 0.00 0.00 0.00 4.61
55 56 3.311110 TGGACTCGACAGGTGGGC 61.311 66.667 0.00 0.00 0.00 5.36
56 57 4.083862 GGACTCGACAGGTGGGCC 62.084 72.222 0.00 0.00 0.00 5.80
57 58 4.083862 GACTCGACAGGTGGGCCC 62.084 72.222 17.59 17.59 34.57 5.80
61 62 4.530857 CGACAGGTGGGCCCGATC 62.531 72.222 19.37 10.20 38.74 3.69
62 63 4.530857 GACAGGTGGGCCCGATCG 62.531 72.222 19.37 8.51 38.74 3.69
67 68 4.530857 GTGGGCCCGATCGGTCAG 62.531 72.222 31.22 18.01 38.37 3.51
70 71 3.782443 GGCCCGATCGGTCAGGTT 61.782 66.667 31.22 0.00 35.67 3.50
71 72 2.267961 GCCCGATCGGTCAGGTTT 59.732 61.111 31.22 0.00 0.00 3.27
72 73 2.106683 GCCCGATCGGTCAGGTTTG 61.107 63.158 31.22 15.10 0.00 2.93
73 74 1.295423 CCCGATCGGTCAGGTTTGT 59.705 57.895 31.22 0.00 0.00 2.83
74 75 0.321298 CCCGATCGGTCAGGTTTGTT 60.321 55.000 31.22 0.00 0.00 2.83
75 76 0.796312 CCGATCGGTCAGGTTTGTTG 59.204 55.000 26.35 0.00 0.00 3.33
76 77 1.508632 CGATCGGTCAGGTTTGTTGT 58.491 50.000 7.38 0.00 0.00 3.32
77 78 1.871039 CGATCGGTCAGGTTTGTTGTT 59.129 47.619 7.38 0.00 0.00 2.83
78 79 3.061322 CGATCGGTCAGGTTTGTTGTTA 58.939 45.455 7.38 0.00 0.00 2.41
79 80 3.122948 CGATCGGTCAGGTTTGTTGTTAG 59.877 47.826 7.38 0.00 0.00 2.34
80 81 3.547054 TCGGTCAGGTTTGTTGTTAGT 57.453 42.857 0.00 0.00 0.00 2.24
81 82 3.460103 TCGGTCAGGTTTGTTGTTAGTC 58.540 45.455 0.00 0.00 0.00 2.59
82 83 3.118702 TCGGTCAGGTTTGTTGTTAGTCA 60.119 43.478 0.00 0.00 0.00 3.41
83 84 3.813166 CGGTCAGGTTTGTTGTTAGTCAT 59.187 43.478 0.00 0.00 0.00 3.06
84 85 4.084013 CGGTCAGGTTTGTTGTTAGTCATC 60.084 45.833 0.00 0.00 0.00 2.92
85 86 5.063880 GGTCAGGTTTGTTGTTAGTCATCT 58.936 41.667 0.00 0.00 0.00 2.90
86 87 5.179555 GGTCAGGTTTGTTGTTAGTCATCTC 59.820 44.000 0.00 0.00 0.00 2.75
87 88 5.179555 GTCAGGTTTGTTGTTAGTCATCTCC 59.820 44.000 0.00 0.00 0.00 3.71
88 89 4.152402 CAGGTTTGTTGTTAGTCATCTCCG 59.848 45.833 0.00 0.00 0.00 4.63
89 90 3.435671 GGTTTGTTGTTAGTCATCTCCGG 59.564 47.826 0.00 0.00 0.00 5.14
90 91 4.312443 GTTTGTTGTTAGTCATCTCCGGA 58.688 43.478 2.93 2.93 0.00 5.14
91 92 3.868757 TGTTGTTAGTCATCTCCGGAG 57.131 47.619 26.32 26.32 0.00 4.63
92 93 2.094182 TGTTGTTAGTCATCTCCGGAGC 60.094 50.000 27.39 12.69 0.00 4.70
93 94 0.738975 TGTTAGTCATCTCCGGAGCG 59.261 55.000 27.39 19.42 0.00 5.03
103 104 3.656045 CCGGAGCGGTGCGTTTTT 61.656 61.111 26.24 0.00 42.73 1.94
123 124 3.969117 TTTTACTCACTTGCTGCACAG 57.031 42.857 0.00 6.07 0.00 3.66
124 125 2.908688 TTACTCACTTGCTGCACAGA 57.091 45.000 0.00 0.00 0.00 3.41
125 126 3.407424 TTACTCACTTGCTGCACAGAT 57.593 42.857 0.00 0.00 0.00 2.90
126 127 4.535526 TTACTCACTTGCTGCACAGATA 57.464 40.909 0.00 0.00 0.00 1.98
127 128 2.969990 ACTCACTTGCTGCACAGATAG 58.030 47.619 0.00 0.00 0.00 2.08
128 129 2.301296 ACTCACTTGCTGCACAGATAGT 59.699 45.455 0.00 0.00 0.00 2.12
141 142 5.749596 CACAGATAGTGGTTTTGTGTGAA 57.250 39.130 0.00 0.00 44.69 3.18
142 143 6.317789 CACAGATAGTGGTTTTGTGTGAAT 57.682 37.500 0.00 0.00 44.69 2.57
143 144 6.738114 CACAGATAGTGGTTTTGTGTGAATT 58.262 36.000 0.00 0.00 44.69 2.17
144 145 7.202526 CACAGATAGTGGTTTTGTGTGAATTT 58.797 34.615 0.00 0.00 44.69 1.82
145 146 7.706179 CACAGATAGTGGTTTTGTGTGAATTTT 59.294 33.333 0.00 0.00 44.69 1.82
146 147 7.706179 ACAGATAGTGGTTTTGTGTGAATTTTG 59.294 33.333 0.00 0.00 0.00 2.44
147 148 7.169645 CAGATAGTGGTTTTGTGTGAATTTTGG 59.830 37.037 0.00 0.00 0.00 3.28
148 149 3.938334 AGTGGTTTTGTGTGAATTTTGGC 59.062 39.130 0.00 0.00 0.00 4.52
149 150 3.686726 GTGGTTTTGTGTGAATTTTGGCA 59.313 39.130 0.00 0.00 0.00 4.92
150 151 4.154918 GTGGTTTTGTGTGAATTTTGGCAA 59.845 37.500 0.00 0.00 0.00 4.52
151 152 4.761739 TGGTTTTGTGTGAATTTTGGCAAA 59.238 33.333 8.93 8.93 0.00 3.68
152 153 5.241506 TGGTTTTGTGTGAATTTTGGCAAAA 59.758 32.000 25.94 25.94 34.70 2.44
153 154 6.152379 GGTTTTGTGTGAATTTTGGCAAAAA 58.848 32.000 27.25 10.27 39.53 1.94
154 155 6.088749 GGTTTTGTGTGAATTTTGGCAAAAAC 59.911 34.615 27.25 20.81 38.07 2.43
155 156 4.590400 TGTGTGAATTTTGGCAAAAACG 57.410 36.364 27.25 0.00 38.07 3.60
156 157 3.372206 TGTGTGAATTTTGGCAAAAACGG 59.628 39.130 27.25 0.00 38.07 4.44
157 158 3.372514 GTGTGAATTTTGGCAAAAACGGT 59.627 39.130 27.25 13.92 38.07 4.83
158 159 3.372206 TGTGAATTTTGGCAAAAACGGTG 59.628 39.130 27.25 0.00 38.07 4.94
159 160 2.939103 TGAATTTTGGCAAAAACGGTGG 59.061 40.909 27.25 0.00 38.07 4.61
160 161 1.304254 ATTTTGGCAAAAACGGTGGC 58.696 45.000 27.25 0.00 38.07 5.01
163 164 4.769047 GGCAAAAACGGTGGCAAT 57.231 50.000 0.00 0.00 41.05 3.56
164 165 2.999356 GGCAAAAACGGTGGCAATT 58.001 47.368 0.00 0.00 41.05 2.32
165 166 1.304254 GGCAAAAACGGTGGCAATTT 58.696 45.000 0.00 0.00 41.05 1.82
166 167 1.003008 GGCAAAAACGGTGGCAATTTG 60.003 47.619 0.00 0.00 41.05 2.32
167 168 1.668237 GCAAAAACGGTGGCAATTTGT 59.332 42.857 0.00 0.00 34.37 2.83
168 169 2.096657 GCAAAAACGGTGGCAATTTGTT 59.903 40.909 0.00 0.00 34.37 2.83
169 170 3.309954 GCAAAAACGGTGGCAATTTGTTA 59.690 39.130 0.00 0.00 34.37 2.41
170 171 4.783764 GCAAAAACGGTGGCAATTTGTTAC 60.784 41.667 0.00 0.00 34.37 2.50
171 172 2.804697 AACGGTGGCAATTTGTTACC 57.195 45.000 11.75 11.75 0.00 2.85
172 173 0.963225 ACGGTGGCAATTTGTTACCC 59.037 50.000 14.48 2.42 0.00 3.69
173 174 1.253100 CGGTGGCAATTTGTTACCCT 58.747 50.000 14.48 0.00 0.00 4.34
174 175 2.224818 ACGGTGGCAATTTGTTACCCTA 60.225 45.455 14.48 0.00 0.00 3.53
175 176 2.422127 CGGTGGCAATTTGTTACCCTAG 59.578 50.000 14.48 0.00 0.00 3.02
176 177 2.165641 GGTGGCAATTTGTTACCCTAGC 59.834 50.000 11.05 0.00 0.00 3.42
177 178 2.165641 GTGGCAATTTGTTACCCTAGCC 59.834 50.000 0.00 0.00 41.15 3.93
178 179 2.452505 GGCAATTTGTTACCCTAGCCA 58.547 47.619 0.00 0.00 40.50 4.75
179 180 2.165641 GGCAATTTGTTACCCTAGCCAC 59.834 50.000 0.00 0.00 40.50 5.01
180 181 2.823154 GCAATTTGTTACCCTAGCCACA 59.177 45.455 0.00 0.00 0.00 4.17
181 182 3.447229 GCAATTTGTTACCCTAGCCACAT 59.553 43.478 0.00 0.00 0.00 3.21
182 183 4.677779 GCAATTTGTTACCCTAGCCACATG 60.678 45.833 0.00 0.00 0.00 3.21
183 184 3.799432 TTTGTTACCCTAGCCACATGT 57.201 42.857 0.00 0.00 0.00 3.21
184 185 2.779755 TGTTACCCTAGCCACATGTG 57.220 50.000 19.31 19.31 0.00 3.21
185 186 2.261729 TGTTACCCTAGCCACATGTGA 58.738 47.619 27.46 6.48 0.00 3.58
186 187 2.027561 TGTTACCCTAGCCACATGTGAC 60.028 50.000 27.46 16.42 0.00 3.67
187 188 0.821517 TACCCTAGCCACATGTGACG 59.178 55.000 27.46 12.40 0.00 4.35
188 189 1.153369 CCCTAGCCACATGTGACGG 60.153 63.158 27.46 18.63 0.00 4.79
189 190 1.596934 CCTAGCCACATGTGACGGT 59.403 57.895 27.46 18.16 0.00 4.83
190 191 0.036388 CCTAGCCACATGTGACGGTT 60.036 55.000 27.46 11.17 0.00 4.44
191 192 1.359848 CTAGCCACATGTGACGGTTC 58.640 55.000 27.46 8.43 0.00 3.62
192 193 0.973632 TAGCCACATGTGACGGTTCT 59.026 50.000 27.46 14.49 0.00 3.01
193 194 0.973632 AGCCACATGTGACGGTTCTA 59.026 50.000 27.46 0.00 0.00 2.10
194 195 1.066858 AGCCACATGTGACGGTTCTAG 60.067 52.381 27.46 7.94 0.00 2.43
195 196 2.007049 GCCACATGTGACGGTTCTAGG 61.007 57.143 27.46 7.28 0.00 3.02
196 197 1.359848 CACATGTGACGGTTCTAGGC 58.640 55.000 21.64 0.00 0.00 3.93
197 198 0.973632 ACATGTGACGGTTCTAGGCA 59.026 50.000 0.00 0.00 0.00 4.75
198 199 1.346395 ACATGTGACGGTTCTAGGCAA 59.654 47.619 0.00 0.00 0.00 4.52
199 200 1.732259 CATGTGACGGTTCTAGGCAAC 59.268 52.381 0.00 0.00 0.00 4.17
217 218 6.769608 GGCAACTTACTTTCATTTTGAAGG 57.230 37.500 0.00 0.00 37.70 3.46
218 219 6.280643 GGCAACTTACTTTCATTTTGAAGGT 58.719 36.000 9.51 9.51 46.36 3.50
219 220 6.420903 GGCAACTTACTTTCATTTTGAAGGTC 59.579 38.462 8.09 0.00 41.97 3.85
220 221 6.420903 GCAACTTACTTTCATTTTGAAGGTCC 59.579 38.462 8.09 0.00 41.97 4.46
221 222 7.684428 GCAACTTACTTTCATTTTGAAGGTCCT 60.684 37.037 8.09 0.00 41.97 3.85
222 223 7.511959 ACTTACTTTCATTTTGAAGGTCCTC 57.488 36.000 8.09 0.00 41.97 3.71
223 224 7.290813 ACTTACTTTCATTTTGAAGGTCCTCT 58.709 34.615 8.09 0.00 41.97 3.69
224 225 7.780271 ACTTACTTTCATTTTGAAGGTCCTCTT 59.220 33.333 8.09 0.00 41.97 2.85
225 226 9.284968 CTTACTTTCATTTTGAAGGTCCTCTTA 57.715 33.333 8.09 0.00 41.97 2.10
226 227 7.751768 ACTTTCATTTTGAAGGTCCTCTTAG 57.248 36.000 0.00 0.00 41.97 2.18
227 228 6.717084 ACTTTCATTTTGAAGGTCCTCTTAGG 59.283 38.462 0.00 0.00 41.97 2.69
228 229 6.448369 TTCATTTTGAAGGTCCTCTTAGGA 57.552 37.500 0.00 0.00 35.45 2.94
229 230 6.238648 TTCATTTTGAAGGTCCTCTTAGGAC 58.761 40.000 16.27 16.27 46.22 3.85
241 242 5.431765 TCCTCTTAGGACATTCTTGAATGC 58.568 41.667 19.59 13.41 40.06 3.56
242 243 5.045651 TCCTCTTAGGACATTCTTGAATGCA 60.046 40.000 19.59 0.00 40.06 3.96
243 244 5.296283 CCTCTTAGGACATTCTTGAATGCAG 59.704 44.000 19.59 10.30 37.67 4.41
244 245 6.053632 TCTTAGGACATTCTTGAATGCAGA 57.946 37.500 19.59 11.91 33.57 4.26
245 246 6.111382 TCTTAGGACATTCTTGAATGCAGAG 58.889 40.000 19.59 12.13 33.57 3.35
246 247 3.015327 AGGACATTCTTGAATGCAGAGC 58.985 45.455 19.59 7.41 33.57 4.09
247 248 2.751259 GGACATTCTTGAATGCAGAGCA 59.249 45.455 19.59 0.00 44.86 4.26
248 249 3.427233 GGACATTCTTGAATGCAGAGCAC 60.427 47.826 19.59 6.25 43.04 4.40
249 250 3.151554 ACATTCTTGAATGCAGAGCACA 58.848 40.909 19.59 0.00 43.04 4.57
250 251 3.570975 ACATTCTTGAATGCAGAGCACAA 59.429 39.130 19.59 0.00 43.04 3.33
251 252 4.038282 ACATTCTTGAATGCAGAGCACAAA 59.962 37.500 19.59 0.00 43.04 2.83
252 253 3.631145 TCTTGAATGCAGAGCACAAAC 57.369 42.857 0.00 0.00 43.04 2.93
253 254 2.950975 TCTTGAATGCAGAGCACAAACA 59.049 40.909 0.00 0.00 43.04 2.83
254 255 3.570975 TCTTGAATGCAGAGCACAAACAT 59.429 39.130 0.00 0.00 43.04 2.71
255 256 3.564235 TGAATGCAGAGCACAAACATC 57.436 42.857 0.00 0.00 43.04 3.06
256 257 2.885894 TGAATGCAGAGCACAAACATCA 59.114 40.909 0.00 0.00 43.04 3.07
257 258 3.318557 TGAATGCAGAGCACAAACATCAA 59.681 39.130 0.00 0.00 43.04 2.57
258 259 4.202131 TGAATGCAGAGCACAAACATCAAA 60.202 37.500 0.00 0.00 43.04 2.69
259 260 3.358707 TGCAGAGCACAAACATCAAAG 57.641 42.857 0.00 0.00 31.71 2.77
260 261 2.056577 GCAGAGCACAAACATCAAAGC 58.943 47.619 0.00 0.00 0.00 3.51
261 262 2.669364 CAGAGCACAAACATCAAAGCC 58.331 47.619 0.00 0.00 0.00 4.35
262 263 2.295349 CAGAGCACAAACATCAAAGCCT 59.705 45.455 0.00 0.00 0.00 4.58
263 264 2.555757 AGAGCACAAACATCAAAGCCTC 59.444 45.455 0.00 0.00 0.00 4.70
264 265 2.555757 GAGCACAAACATCAAAGCCTCT 59.444 45.455 0.00 0.00 0.00 3.69
265 266 2.961062 AGCACAAACATCAAAGCCTCTT 59.039 40.909 0.00 0.00 0.00 2.85
266 267 4.144297 AGCACAAACATCAAAGCCTCTTA 58.856 39.130 0.00 0.00 0.00 2.10
267 268 4.217118 AGCACAAACATCAAAGCCTCTTAG 59.783 41.667 0.00 0.00 0.00 2.18
268 269 4.022849 GCACAAACATCAAAGCCTCTTAGT 60.023 41.667 0.00 0.00 0.00 2.24
269 270 5.693814 CACAAACATCAAAGCCTCTTAGTC 58.306 41.667 0.00 0.00 0.00 2.59
270 271 5.471456 CACAAACATCAAAGCCTCTTAGTCT 59.529 40.000 0.00 0.00 0.00 3.24
271 272 5.703130 ACAAACATCAAAGCCTCTTAGTCTC 59.297 40.000 0.00 0.00 0.00 3.36
272 273 4.116747 ACATCAAAGCCTCTTAGTCTCG 57.883 45.455 0.00 0.00 0.00 4.04
273 274 3.764434 ACATCAAAGCCTCTTAGTCTCGA 59.236 43.478 0.00 0.00 0.00 4.04
274 275 4.142271 ACATCAAAGCCTCTTAGTCTCGAG 60.142 45.833 5.93 5.93 0.00 4.04
275 276 3.687125 TCAAAGCCTCTTAGTCTCGAGA 58.313 45.455 12.08 12.08 0.00 4.04
276 277 4.274147 TCAAAGCCTCTTAGTCTCGAGAT 58.726 43.478 19.90 10.23 0.00 2.75
277 278 5.437946 TCAAAGCCTCTTAGTCTCGAGATA 58.562 41.667 19.90 9.22 0.00 1.98
278 279 5.297278 TCAAAGCCTCTTAGTCTCGAGATAC 59.703 44.000 19.90 7.33 0.00 2.24
279 280 3.746940 AGCCTCTTAGTCTCGAGATACC 58.253 50.000 19.90 5.86 0.00 2.73
280 281 2.481185 GCCTCTTAGTCTCGAGATACCG 59.519 54.545 19.90 8.28 0.00 4.02
281 282 3.803021 GCCTCTTAGTCTCGAGATACCGA 60.803 52.174 19.90 12.02 37.03 4.69
291 292 2.994578 TCGAGATACCGAGAGCTTATCG 59.005 50.000 13.63 13.63 39.86 2.92
298 299 2.579207 CGAGAGCTTATCGGTTTGGA 57.421 50.000 12.95 0.00 36.54 3.53
299 300 2.464865 CGAGAGCTTATCGGTTTGGAG 58.535 52.381 12.95 0.00 36.54 3.86
300 301 2.799917 CGAGAGCTTATCGGTTTGGAGG 60.800 54.545 12.95 0.00 36.54 4.30
301 302 2.431057 GAGAGCTTATCGGTTTGGAGGA 59.569 50.000 0.00 0.00 0.00 3.71
302 303 2.838202 AGAGCTTATCGGTTTGGAGGAA 59.162 45.455 0.00 0.00 0.00 3.36
303 304 3.456277 AGAGCTTATCGGTTTGGAGGAAT 59.544 43.478 0.00 0.00 0.00 3.01
304 305 4.080299 AGAGCTTATCGGTTTGGAGGAATT 60.080 41.667 0.00 0.00 0.00 2.17
305 306 4.600062 AGCTTATCGGTTTGGAGGAATTT 58.400 39.130 0.00 0.00 0.00 1.82
306 307 5.016831 AGCTTATCGGTTTGGAGGAATTTT 58.983 37.500 0.00 0.00 0.00 1.82
307 308 5.102313 GCTTATCGGTTTGGAGGAATTTTG 58.898 41.667 0.00 0.00 0.00 2.44
308 309 5.650543 CTTATCGGTTTGGAGGAATTTTGG 58.349 41.667 0.00 0.00 0.00 3.28
309 310 3.231207 TCGGTTTGGAGGAATTTTGGA 57.769 42.857 0.00 0.00 0.00 3.53
310 311 3.153919 TCGGTTTGGAGGAATTTTGGAG 58.846 45.455 0.00 0.00 0.00 3.86
311 312 2.890945 CGGTTTGGAGGAATTTTGGAGT 59.109 45.455 0.00 0.00 0.00 3.85
312 313 4.076394 CGGTTTGGAGGAATTTTGGAGTA 58.924 43.478 0.00 0.00 0.00 2.59
313 314 4.705023 CGGTTTGGAGGAATTTTGGAGTAT 59.295 41.667 0.00 0.00 0.00 2.12
314 315 5.185056 CGGTTTGGAGGAATTTTGGAGTATT 59.815 40.000 0.00 0.00 0.00 1.89
315 316 6.295067 CGGTTTGGAGGAATTTTGGAGTATTT 60.295 38.462 0.00 0.00 0.00 1.40
316 317 7.097192 GGTTTGGAGGAATTTTGGAGTATTTC 58.903 38.462 0.00 0.00 0.00 2.17
317 318 7.039011 GGTTTGGAGGAATTTTGGAGTATTTCT 60.039 37.037 0.00 0.00 0.00 2.52
318 319 9.020731 GTTTGGAGGAATTTTGGAGTATTTCTA 57.979 33.333 0.00 0.00 0.00 2.10
319 320 8.575649 TTGGAGGAATTTTGGAGTATTTCTAC 57.424 34.615 0.00 0.00 0.00 2.59
320 321 7.695055 TGGAGGAATTTTGGAGTATTTCTACA 58.305 34.615 0.00 0.00 34.79 2.74
321 322 7.829211 TGGAGGAATTTTGGAGTATTTCTACAG 59.171 37.037 0.00 0.00 38.37 2.74
322 323 7.283354 GGAGGAATTTTGGAGTATTTCTACAGG 59.717 40.741 0.00 0.00 38.37 4.00
323 324 7.928873 AGGAATTTTGGAGTATTTCTACAGGA 58.071 34.615 0.00 0.00 38.37 3.86
324 325 8.560903 AGGAATTTTGGAGTATTTCTACAGGAT 58.439 33.333 0.00 0.00 38.37 3.24
325 326 9.190317 GGAATTTTGGAGTATTTCTACAGGATT 57.810 33.333 0.00 0.00 38.37 3.01
348 349 4.398549 TTTTTCCTATGTTGAGCGTTCG 57.601 40.909 0.00 0.00 0.00 3.95
349 350 2.736144 TTCCTATGTTGAGCGTTCGT 57.264 45.000 0.00 0.00 0.00 3.85
350 351 2.736144 TCCTATGTTGAGCGTTCGTT 57.264 45.000 0.00 0.00 0.00 3.85
351 352 3.034721 TCCTATGTTGAGCGTTCGTTT 57.965 42.857 0.00 0.00 0.00 3.60
352 353 2.991190 TCCTATGTTGAGCGTTCGTTTC 59.009 45.455 0.00 0.00 0.00 2.78
353 354 2.734606 CCTATGTTGAGCGTTCGTTTCA 59.265 45.455 0.00 0.00 0.00 2.69
354 355 3.370978 CCTATGTTGAGCGTTCGTTTCAT 59.629 43.478 0.00 0.05 0.00 2.57
355 356 4.565166 CCTATGTTGAGCGTTCGTTTCATA 59.435 41.667 0.00 1.15 0.00 2.15
356 357 4.584029 ATGTTGAGCGTTCGTTTCATAG 57.416 40.909 0.00 0.00 0.00 2.23
357 358 2.734606 TGTTGAGCGTTCGTTTCATAGG 59.265 45.455 0.00 0.00 0.00 2.57
358 359 2.991190 GTTGAGCGTTCGTTTCATAGGA 59.009 45.455 0.00 0.00 0.00 2.94
359 360 3.306917 TGAGCGTTCGTTTCATAGGAA 57.693 42.857 0.00 0.00 0.00 3.36
360 361 3.250744 TGAGCGTTCGTTTCATAGGAAG 58.749 45.455 0.00 0.00 33.82 3.46
361 362 3.057104 TGAGCGTTCGTTTCATAGGAAGA 60.057 43.478 0.00 0.00 33.82 2.87
362 363 3.512680 AGCGTTCGTTTCATAGGAAGAG 58.487 45.455 0.00 0.00 33.82 2.85
363 364 3.192844 AGCGTTCGTTTCATAGGAAGAGA 59.807 43.478 0.00 0.00 33.82 3.10
364 365 3.924686 GCGTTCGTTTCATAGGAAGAGAA 59.075 43.478 5.60 5.60 33.82 2.87
365 366 4.031878 GCGTTCGTTTCATAGGAAGAGAAG 59.968 45.833 8.81 6.02 33.78 2.85
366 367 5.162075 CGTTCGTTTCATAGGAAGAGAAGT 58.838 41.667 8.81 0.00 33.78 3.01
367 368 5.061064 CGTTCGTTTCATAGGAAGAGAAGTG 59.939 44.000 8.81 3.50 33.78 3.16
368 369 5.977489 TCGTTTCATAGGAAGAGAAGTGA 57.023 39.130 0.00 0.00 33.82 3.41
369 370 6.531503 TCGTTTCATAGGAAGAGAAGTGAT 57.468 37.500 0.00 0.00 33.82 3.06
370 371 7.640597 TCGTTTCATAGGAAGAGAAGTGATA 57.359 36.000 0.00 0.00 33.82 2.15
371 372 7.708051 TCGTTTCATAGGAAGAGAAGTGATAG 58.292 38.462 0.00 0.00 33.82 2.08
372 373 7.556635 TCGTTTCATAGGAAGAGAAGTGATAGA 59.443 37.037 0.00 0.00 33.82 1.98
373 374 8.356657 CGTTTCATAGGAAGAGAAGTGATAGAT 58.643 37.037 0.00 0.00 33.82 1.98
376 377 8.415950 TCATAGGAAGAGAAGTGATAGATTCC 57.584 38.462 0.00 0.00 35.93 3.01
377 378 8.231007 TCATAGGAAGAGAAGTGATAGATTCCT 58.769 37.037 8.49 8.49 45.26 3.36
378 379 9.527157 CATAGGAAGAGAAGTGATAGATTCCTA 57.473 37.037 11.90 11.90 46.43 2.94
380 381 8.477419 AGGAAGAGAAGTGATAGATTCCTAAG 57.523 38.462 1.84 0.00 42.40 2.18
381 382 7.508977 AGGAAGAGAAGTGATAGATTCCTAAGG 59.491 40.741 1.84 0.00 42.40 2.69
382 383 7.507616 GGAAGAGAAGTGATAGATTCCTAAGGA 59.492 40.741 0.00 0.00 33.51 3.36
383 384 7.833285 AGAGAAGTGATAGATTCCTAAGGAC 57.167 40.000 0.00 0.00 0.00 3.85
384 385 7.591821 AGAGAAGTGATAGATTCCTAAGGACT 58.408 38.462 0.00 0.00 0.00 3.85
385 386 8.729047 AGAGAAGTGATAGATTCCTAAGGACTA 58.271 37.037 0.00 0.00 0.00 2.59
386 387 9.528489 GAGAAGTGATAGATTCCTAAGGACTAT 57.472 37.037 0.00 0.00 0.00 2.12
387 388 9.308000 AGAAGTGATAGATTCCTAAGGACTATG 57.692 37.037 0.00 0.00 0.00 2.23
388 389 9.084533 GAAGTGATAGATTCCTAAGGACTATGT 57.915 37.037 0.00 0.00 0.00 2.29
389 390 8.644374 AGTGATAGATTCCTAAGGACTATGTC 57.356 38.462 0.00 0.00 0.00 3.06
406 407 8.779354 GACTATGTCCATATTGACCTAATTCC 57.221 38.462 4.59 0.00 34.25 3.01
407 408 8.511748 ACTATGTCCATATTGACCTAATTCCT 57.488 34.615 4.59 0.00 34.25 3.36
408 409 9.615660 ACTATGTCCATATTGACCTAATTCCTA 57.384 33.333 4.59 0.00 34.25 2.94
411 412 7.745717 TGTCCATATTGACCTAATTCCTAAGG 58.254 38.462 4.59 0.00 38.93 2.69
412 413 7.570982 TGTCCATATTGACCTAATTCCTAAGGA 59.429 37.037 4.59 0.00 36.66 3.36
413 414 8.606830 GTCCATATTGACCTAATTCCTAAGGAT 58.393 37.037 0.00 0.00 36.66 3.24
414 415 9.182642 TCCATATTGACCTAATTCCTAAGGATT 57.817 33.333 0.00 0.00 36.66 3.01
415 416 9.454859 CCATATTGACCTAATTCCTAAGGATTC 57.545 37.037 0.00 0.00 36.66 2.52
416 417 9.454859 CATATTGACCTAATTCCTAAGGATTCC 57.545 37.037 0.00 0.00 36.66 3.01
417 418 7.713704 ATTGACCTAATTCCTAAGGATTCCT 57.286 36.000 0.00 0.00 36.66 3.36
418 419 8.814448 ATTGACCTAATTCCTAAGGATTCCTA 57.186 34.615 5.43 0.00 36.66 2.94
419 420 8.814448 TTGACCTAATTCCTAAGGATTCCTAT 57.186 34.615 5.43 0.00 36.66 2.57
420 421 8.814448 TGACCTAATTCCTAAGGATTCCTATT 57.186 34.615 5.43 4.38 36.66 1.73
421 422 9.237706 TGACCTAATTCCTAAGGATTCCTATTT 57.762 33.333 5.43 0.00 36.66 1.40
444 445 9.933240 ATTTAAGAAGAATGAATTCCTGAGGAT 57.067 29.630 0.04 0.00 37.51 3.24
445 446 9.759473 TTTAAGAAGAATGAATTCCTGAGGATT 57.241 29.630 0.04 0.00 37.51 3.01
446 447 7.878547 AAGAAGAATGAATTCCTGAGGATTC 57.121 36.000 0.04 9.13 37.51 2.52
447 448 7.210618 AGAAGAATGAATTCCTGAGGATTCT 57.789 36.000 18.10 13.89 37.51 2.40
448 449 7.641249 AGAAGAATGAATTCCTGAGGATTCTT 58.359 34.615 20.99 20.99 38.17 2.52
449 450 8.776119 AGAAGAATGAATTCCTGAGGATTCTTA 58.224 33.333 20.92 0.02 36.66 2.10
450 451 8.977267 AAGAATGAATTCCTGAGGATTCTTAG 57.023 34.615 19.99 0.00 35.55 2.18
451 452 8.100135 AGAATGAATTCCTGAGGATTCTTAGT 57.900 34.615 18.10 0.00 37.51 2.24
452 453 9.218525 AGAATGAATTCCTGAGGATTCTTAGTA 57.781 33.333 18.10 0.00 37.51 1.82
457 458 9.936759 GAATTCCTGAGGATTCTTAGTATTAGG 57.063 37.037 0.04 0.00 0.00 2.69
458 459 9.453830 AATTCCTGAGGATTCTTAGTATTAGGT 57.546 33.333 0.04 0.00 0.00 3.08
459 460 7.841282 TCCTGAGGATTCTTAGTATTAGGTG 57.159 40.000 0.00 0.00 0.00 4.00
460 461 7.592736 TCCTGAGGATTCTTAGTATTAGGTGA 58.407 38.462 0.00 0.00 0.00 4.02
461 462 7.726291 TCCTGAGGATTCTTAGTATTAGGTGAG 59.274 40.741 0.00 0.00 0.00 3.51
462 463 7.726291 CCTGAGGATTCTTAGTATTAGGTGAGA 59.274 40.741 0.00 0.00 0.00 3.27
463 464 8.466617 TGAGGATTCTTAGTATTAGGTGAGAC 57.533 38.462 0.00 0.00 0.00 3.36
464 465 7.506261 TGAGGATTCTTAGTATTAGGTGAGACC 59.494 40.741 0.00 0.00 38.99 3.85
478 479 5.316327 GGTGAGACCTGATGAAAAATTCC 57.684 43.478 0.00 0.00 34.73 3.01
479 480 5.012893 GGTGAGACCTGATGAAAAATTCCT 58.987 41.667 0.00 0.00 34.73 3.36
480 481 6.180472 GGTGAGACCTGATGAAAAATTCCTA 58.820 40.000 0.00 0.00 34.73 2.94
481 482 6.659242 GGTGAGACCTGATGAAAAATTCCTAA 59.341 38.462 0.00 0.00 34.73 2.69
482 483 7.340487 GGTGAGACCTGATGAAAAATTCCTAAT 59.660 37.037 0.00 0.00 34.73 1.73
483 484 8.743714 GTGAGACCTGATGAAAAATTCCTAATT 58.256 33.333 0.00 0.00 0.00 1.40
484 485 8.742777 TGAGACCTGATGAAAAATTCCTAATTG 58.257 33.333 0.00 0.00 0.00 2.32
485 486 8.884124 AGACCTGATGAAAAATTCCTAATTGA 57.116 30.769 0.00 0.00 0.00 2.57
486 487 9.312904 AGACCTGATGAAAAATTCCTAATTGAA 57.687 29.630 0.00 0.00 0.00 2.69
487 488 9.578439 GACCTGATGAAAAATTCCTAATTGAAG 57.422 33.333 0.00 0.00 0.00 3.02
488 489 9.093458 ACCTGATGAAAAATTCCTAATTGAAGT 57.907 29.630 0.00 0.00 0.00 3.01
489 490 9.362539 CCTGATGAAAAATTCCTAATTGAAGTG 57.637 33.333 0.00 0.00 0.00 3.16
497 498 9.696917 AAAATTCCTAATTGAAGTGAACATGAC 57.303 29.630 0.00 0.00 0.00 3.06
498 499 8.408043 AATTCCTAATTGAAGTGAACATGACA 57.592 30.769 0.00 0.00 0.00 3.58
499 500 8.585471 ATTCCTAATTGAAGTGAACATGACAT 57.415 30.769 0.00 0.00 0.00 3.06
500 501 8.408043 TTCCTAATTGAAGTGAACATGACATT 57.592 30.769 0.00 0.00 0.00 2.71
501 502 8.408043 TCCTAATTGAAGTGAACATGACATTT 57.592 30.769 0.00 2.42 0.00 2.32
502 503 8.514594 TCCTAATTGAAGTGAACATGACATTTC 58.485 33.333 17.87 17.87 35.55 2.17
503 504 8.298854 CCTAATTGAAGTGAACATGACATTTCA 58.701 33.333 20.91 20.91 40.36 2.69
507 508 7.274603 TGAAGTGAACATGACATTTCAATCA 57.725 32.000 21.76 15.31 39.62 2.57
508 509 7.888424 TGAAGTGAACATGACATTTCAATCAT 58.112 30.769 21.76 2.34 39.62 2.45
509 510 8.361889 TGAAGTGAACATGACATTTCAATCATT 58.638 29.630 21.76 7.98 39.62 2.57
510 511 9.199982 GAAGTGAACATGACATTTCAATCATTT 57.800 29.630 18.91 4.31 35.25 2.32
512 513 9.630098 AGTGAACATGACATTTCAATCATTTAC 57.370 29.630 0.00 0.00 33.18 2.01
513 514 9.630098 GTGAACATGACATTTCAATCATTTACT 57.370 29.630 0.00 0.00 33.18 2.24
556 557 9.554724 TTTGAGAATATTGTAAAACGAATGAGC 57.445 29.630 0.00 0.00 0.00 4.26
557 558 7.693952 TGAGAATATTGTAAAACGAATGAGCC 58.306 34.615 0.00 0.00 0.00 4.70
558 559 6.715464 AGAATATTGTAAAACGAATGAGCCG 58.285 36.000 0.00 0.00 0.00 5.52
559 560 6.315393 AGAATATTGTAAAACGAATGAGCCGT 59.685 34.615 0.00 0.00 42.61 5.68
568 569 4.585955 ACGAATGAGCCGTTAGATATGT 57.414 40.909 0.00 0.00 36.83 2.29
569 570 5.700722 ACGAATGAGCCGTTAGATATGTA 57.299 39.130 0.00 0.00 36.83 2.29
570 571 5.458891 ACGAATGAGCCGTTAGATATGTAC 58.541 41.667 0.00 0.00 36.83 2.90
571 572 5.241064 ACGAATGAGCCGTTAGATATGTACT 59.759 40.000 0.00 0.00 36.83 2.73
572 573 6.150318 CGAATGAGCCGTTAGATATGTACTT 58.850 40.000 0.00 0.00 0.00 2.24
573 574 6.088217 CGAATGAGCCGTTAGATATGTACTTG 59.912 42.308 0.00 0.00 0.00 3.16
574 575 5.847111 TGAGCCGTTAGATATGTACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
575 576 6.947644 TGAGCCGTTAGATATGTACTTGTA 57.052 37.500 0.00 0.00 0.00 2.41
576 577 7.520451 TGAGCCGTTAGATATGTACTTGTAT 57.480 36.000 0.00 0.00 0.00 2.29
577 578 7.591165 TGAGCCGTTAGATATGTACTTGTATC 58.409 38.462 0.00 0.41 0.00 2.24
578 579 7.229907 TGAGCCGTTAGATATGTACTTGTATCA 59.770 37.037 12.68 0.00 31.29 2.15
579 580 7.948357 AGCCGTTAGATATGTACTTGTATCAA 58.052 34.615 12.68 0.00 31.29 2.57
580 581 8.418662 AGCCGTTAGATATGTACTTGTATCAAA 58.581 33.333 12.68 2.64 31.29 2.69
581 582 8.485591 GCCGTTAGATATGTACTTGTATCAAAC 58.514 37.037 12.68 0.00 31.29 2.93
582 583 8.688184 CCGTTAGATATGTACTTGTATCAAACG 58.312 37.037 12.68 0.00 31.29 3.60
583 584 9.229784 CGTTAGATATGTACTTGTATCAAACGT 57.770 33.333 12.68 0.00 31.29 3.99
585 586 9.524106 TTAGATATGTACTTGTATCAAACGTGG 57.476 33.333 12.68 0.00 31.29 4.94
586 587 7.778083 AGATATGTACTTGTATCAAACGTGGA 58.222 34.615 12.68 0.00 31.29 4.02
587 588 7.921214 AGATATGTACTTGTATCAAACGTGGAG 59.079 37.037 12.68 0.00 31.29 3.86
588 589 3.991773 TGTACTTGTATCAAACGTGGAGC 59.008 43.478 0.00 0.00 0.00 4.70
590 591 2.288579 ACTTGTATCAAACGTGGAGCGA 60.289 45.455 0.00 0.00 44.77 4.93
591 592 1.705256 TGTATCAAACGTGGAGCGAC 58.295 50.000 0.00 0.00 44.77 5.19
592 593 0.638746 GTATCAAACGTGGAGCGACG 59.361 55.000 3.50 3.50 44.77 5.12
593 594 0.522626 TATCAAACGTGGAGCGACGA 59.477 50.000 11.84 0.00 44.77 4.20
594 595 0.108804 ATCAAACGTGGAGCGACGAT 60.109 50.000 11.84 0.00 44.77 3.73
595 596 1.006825 TCAAACGTGGAGCGACGATG 61.007 55.000 11.84 9.78 44.77 3.84
596 597 1.006825 CAAACGTGGAGCGACGATGA 61.007 55.000 11.84 0.00 44.77 2.92
597 598 0.108804 AAACGTGGAGCGACGATGAT 60.109 50.000 11.84 0.00 44.77 2.45
598 599 0.736636 AACGTGGAGCGACGATGATA 59.263 50.000 11.84 0.00 44.77 2.15
599 600 0.736636 ACGTGGAGCGACGATGATAA 59.263 50.000 11.84 0.00 44.77 1.75
600 601 1.133598 ACGTGGAGCGACGATGATAAA 59.866 47.619 11.84 0.00 44.77 1.40
601 602 2.190161 CGTGGAGCGACGATGATAAAA 58.810 47.619 0.00 0.00 44.77 1.52
602 603 2.794910 CGTGGAGCGACGATGATAAAAT 59.205 45.455 0.00 0.00 44.77 1.82
603 604 3.121328 CGTGGAGCGACGATGATAAAATC 60.121 47.826 0.00 0.00 44.77 2.17
604 605 3.184581 GTGGAGCGACGATGATAAAATCC 59.815 47.826 0.00 0.00 0.00 3.01
605 606 3.069586 TGGAGCGACGATGATAAAATCCT 59.930 43.478 0.00 0.00 0.00 3.24
606 607 3.675698 GGAGCGACGATGATAAAATCCTC 59.324 47.826 0.00 0.00 0.00 3.71
607 608 4.299155 GAGCGACGATGATAAAATCCTCA 58.701 43.478 0.00 0.00 0.00 3.86
608 609 4.302455 AGCGACGATGATAAAATCCTCAG 58.698 43.478 0.00 0.00 0.00 3.35
609 610 3.120854 GCGACGATGATAAAATCCTCAGC 60.121 47.826 0.00 0.00 0.00 4.26
610 611 3.430218 CGACGATGATAAAATCCTCAGCC 59.570 47.826 0.00 0.00 0.00 4.85
611 612 4.380531 GACGATGATAAAATCCTCAGCCA 58.619 43.478 0.00 0.00 0.00 4.75
612 613 4.780815 ACGATGATAAAATCCTCAGCCAA 58.219 39.130 0.00 0.00 0.00 4.52
613 614 5.192927 ACGATGATAAAATCCTCAGCCAAA 58.807 37.500 0.00 0.00 0.00 3.28
614 615 5.652014 ACGATGATAAAATCCTCAGCCAAAA 59.348 36.000 0.00 0.00 0.00 2.44
615 616 6.322201 ACGATGATAAAATCCTCAGCCAAAAT 59.678 34.615 0.00 0.00 0.00 1.82
616 617 6.860023 CGATGATAAAATCCTCAGCCAAAATC 59.140 38.462 0.00 0.00 0.00 2.17
617 618 6.135290 TGATAAAATCCTCAGCCAAAATCG 57.865 37.500 0.00 0.00 0.00 3.34
618 619 5.652014 TGATAAAATCCTCAGCCAAAATCGT 59.348 36.000 0.00 0.00 0.00 3.73
619 620 4.871933 AAAATCCTCAGCCAAAATCGTT 57.128 36.364 0.00 0.00 0.00 3.85
620 621 4.440839 AAATCCTCAGCCAAAATCGTTC 57.559 40.909 0.00 0.00 0.00 3.95
621 622 1.821216 TCCTCAGCCAAAATCGTTCC 58.179 50.000 0.00 0.00 0.00 3.62
622 623 1.073125 TCCTCAGCCAAAATCGTTCCA 59.927 47.619 0.00 0.00 0.00 3.53
623 624 1.885887 CCTCAGCCAAAATCGTTCCAA 59.114 47.619 0.00 0.00 0.00 3.53
624 625 2.295909 CCTCAGCCAAAATCGTTCCAAA 59.704 45.455 0.00 0.00 0.00 3.28
625 626 3.308530 CTCAGCCAAAATCGTTCCAAAC 58.691 45.455 0.00 0.00 0.00 2.93
637 638 3.597377 GTTCCAAACGGTTGTACTCAC 57.403 47.619 13.07 0.00 32.40 3.51
638 639 2.937799 GTTCCAAACGGTTGTACTCACA 59.062 45.455 13.07 0.00 32.40 3.58
639 640 2.553086 TCCAAACGGTTGTACTCACAC 58.447 47.619 13.07 0.00 33.30 3.82
640 641 2.168936 TCCAAACGGTTGTACTCACACT 59.831 45.455 13.07 0.00 33.30 3.55
645 646 5.972107 AACGGTTGTACTCACACTAGTAT 57.028 39.130 0.00 0.00 34.59 2.12
670 671 5.219633 ACAAAACAAATAGTTGATCACGCC 58.780 37.500 10.35 0.00 41.19 5.68
677 678 6.200286 ACAAATAGTTGATCACGCCGTATAAG 59.800 38.462 10.35 0.00 38.20 1.73
693 694 5.106948 CCGTATAAGCATGCCAATCTAGTTG 60.107 44.000 15.66 0.00 37.57 3.16
711 712 6.929049 TCTAGTTGCATAGGAATCATAAACCG 59.071 38.462 0.00 0.00 0.00 4.44
714 715 6.377146 AGTTGCATAGGAATCATAAACCGTTT 59.623 34.615 1.40 1.40 0.00 3.60
715 716 6.767524 TGCATAGGAATCATAAACCGTTTT 57.232 33.333 0.96 0.00 0.00 2.43
716 717 6.791303 TGCATAGGAATCATAAACCGTTTTC 58.209 36.000 0.96 0.00 0.00 2.29
717 718 6.601613 TGCATAGGAATCATAAACCGTTTTCT 59.398 34.615 0.96 0.00 0.00 2.52
805 814 4.855531 TCAACGACATGTCCATACTATCG 58.144 43.478 20.03 8.17 0.00 2.92
867 885 5.801444 TCTTTTTGTTGCATGCATCTTATCG 59.199 36.000 23.37 8.77 0.00 2.92
877 895 3.198068 TGCATCTTATCGACTTTGCCTC 58.802 45.455 0.00 0.00 0.00 4.70
878 896 3.118629 TGCATCTTATCGACTTTGCCTCT 60.119 43.478 0.00 0.00 0.00 3.69
892 8943 0.534652 GCCTCTCTCATCATGCCCAC 60.535 60.000 0.00 0.00 0.00 4.61
906 8957 2.639065 TGCCCACGCTATAAAAAGGAG 58.361 47.619 0.00 0.00 35.36 3.69
915 8966 7.039882 CACGCTATAAAAAGGAGAGGACTAAA 58.960 38.462 0.00 0.00 0.00 1.85
1394 9503 6.742718 GCTGCTTAACACACATAGTTGTATTG 59.257 38.462 0.00 0.00 33.76 1.90
1395 9504 6.607689 TGCTTAACACACATAGTTGTATTGC 58.392 36.000 0.00 0.00 33.76 3.56
1396 9505 6.027749 GCTTAACACACATAGTTGTATTGCC 58.972 40.000 0.00 0.00 33.76 4.52
1397 9506 6.128007 GCTTAACACACATAGTTGTATTGCCT 60.128 38.462 0.00 0.00 33.76 4.75
1398 9507 5.880054 AACACACATAGTTGTATTGCCTC 57.120 39.130 0.00 0.00 33.76 4.70
1399 9508 4.905429 ACACACATAGTTGTATTGCCTCA 58.095 39.130 0.00 0.00 33.76 3.86
1400 9509 5.312895 ACACACATAGTTGTATTGCCTCAA 58.687 37.500 0.00 0.00 33.76 3.02
1401 9510 5.767665 ACACACATAGTTGTATTGCCTCAAA 59.232 36.000 0.00 0.00 33.76 2.69
1402 9511 6.264292 ACACACATAGTTGTATTGCCTCAAAA 59.736 34.615 0.00 0.00 33.76 2.44
1403 9512 7.144661 CACACATAGTTGTATTGCCTCAAAAA 58.855 34.615 0.00 0.00 33.76 1.94
1404 9513 7.326789 CACACATAGTTGTATTGCCTCAAAAAG 59.673 37.037 0.00 0.00 33.76 2.27
1405 9514 7.230510 ACACATAGTTGTATTGCCTCAAAAAGA 59.769 33.333 0.00 0.00 33.76 2.52
1406 9515 8.081633 CACATAGTTGTATTGCCTCAAAAAGAA 58.918 33.333 0.00 0.00 33.76 2.52
1407 9516 8.637986 ACATAGTTGTATTGCCTCAAAAAGAAA 58.362 29.630 0.00 0.00 33.16 2.52
1408 9517 9.474920 CATAGTTGTATTGCCTCAAAAAGAAAA 57.525 29.630 0.00 0.00 0.00 2.29
1736 9857 0.604511 CGGACCTTTAAACCGCCTGT 60.605 55.000 3.15 0.00 40.19 4.00
1836 9958 3.944476 CTGAGACAAACAGGGGGAG 57.056 57.895 0.00 0.00 0.00 4.30
1946 10421 1.590525 GTCGAACACTCGCACCACA 60.591 57.895 0.00 0.00 45.04 4.17
2039 10514 4.338539 GGCGACACTGACGGACGT 62.339 66.667 0.00 0.00 0.00 4.34
2181 10661 0.986527 TCCACTGGTGATGCACATCT 59.013 50.000 11.66 0.00 38.60 2.90
2236 10719 0.472734 AGCCTCTCCAACTCCAGTGT 60.473 55.000 0.00 0.00 0.00 3.55
2237 10720 0.398318 GCCTCTCCAACTCCAGTGTT 59.602 55.000 0.00 0.00 0.00 3.32
2266 10749 2.264480 CATGGTTCTCCGTGCCGA 59.736 61.111 0.00 0.00 42.77 5.54
2271 10754 1.300697 GTTCTCCGTGCCGACAGTT 60.301 57.895 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.735376 GAGCGAGGAGGCGGACATTA 61.735 60.000 0.00 0.00 38.18 1.90
2 3 3.532155 GAGCGAGGAGGCGGACAT 61.532 66.667 0.00 0.00 38.18 3.06
7 8 2.876368 AAAATGGGAGCGAGGAGGCG 62.876 60.000 0.00 0.00 38.18 5.52
8 9 1.077429 AAAATGGGAGCGAGGAGGC 60.077 57.895 0.00 0.00 0.00 4.70
9 10 0.464554 GGAAAATGGGAGCGAGGAGG 60.465 60.000 0.00 0.00 0.00 4.30
10 11 0.464554 GGGAAAATGGGAGCGAGGAG 60.465 60.000 0.00 0.00 0.00 3.69
11 12 0.914417 AGGGAAAATGGGAGCGAGGA 60.914 55.000 0.00 0.00 0.00 3.71
12 13 0.464554 GAGGGAAAATGGGAGCGAGG 60.465 60.000 0.00 0.00 0.00 4.63
13 14 0.253044 TGAGGGAAAATGGGAGCGAG 59.747 55.000 0.00 0.00 0.00 5.03
14 15 0.035439 GTGAGGGAAAATGGGAGCGA 60.035 55.000 0.00 0.00 0.00 4.93
15 16 1.032114 GGTGAGGGAAAATGGGAGCG 61.032 60.000 0.00 0.00 0.00 5.03
16 17 0.332972 AGGTGAGGGAAAATGGGAGC 59.667 55.000 0.00 0.00 0.00 4.70
17 18 1.407437 CGAGGTGAGGGAAAATGGGAG 60.407 57.143 0.00 0.00 0.00 4.30
18 19 0.618458 CGAGGTGAGGGAAAATGGGA 59.382 55.000 0.00 0.00 0.00 4.37
19 20 0.328258 ACGAGGTGAGGGAAAATGGG 59.672 55.000 0.00 0.00 0.00 4.00
20 21 1.453155 CACGAGGTGAGGGAAAATGG 58.547 55.000 0.00 0.00 35.23 3.16
21 22 1.003118 TCCACGAGGTGAGGGAAAATG 59.997 52.381 0.00 0.00 35.23 2.32
22 23 1.003233 GTCCACGAGGTGAGGGAAAAT 59.997 52.381 0.00 0.00 35.23 1.82
23 24 0.395312 GTCCACGAGGTGAGGGAAAA 59.605 55.000 0.00 0.00 35.23 2.29
24 25 0.471211 AGTCCACGAGGTGAGGGAAA 60.471 55.000 0.00 0.00 35.23 3.13
25 26 0.898789 GAGTCCACGAGGTGAGGGAA 60.899 60.000 0.00 0.00 35.23 3.97
26 27 1.304217 GAGTCCACGAGGTGAGGGA 60.304 63.158 0.00 0.00 35.23 4.20
27 28 2.701780 CGAGTCCACGAGGTGAGGG 61.702 68.421 0.00 0.00 35.23 4.30
28 29 1.674651 TCGAGTCCACGAGGTGAGG 60.675 63.158 0.00 0.00 37.37 3.86
29 30 1.235281 TGTCGAGTCCACGAGGTGAG 61.235 60.000 0.00 0.00 42.88 3.51
30 31 1.228033 TGTCGAGTCCACGAGGTGA 60.228 57.895 0.00 0.00 42.88 4.02
31 32 1.210413 CTGTCGAGTCCACGAGGTG 59.790 63.158 0.00 0.00 42.88 4.00
32 33 1.972223 CCTGTCGAGTCCACGAGGT 60.972 63.158 0.00 0.00 42.88 3.85
33 34 1.972223 ACCTGTCGAGTCCACGAGG 60.972 63.158 0.00 0.00 42.88 4.63
34 35 1.210413 CACCTGTCGAGTCCACGAG 59.790 63.158 0.00 0.00 42.88 4.18
35 36 2.265904 CCACCTGTCGAGTCCACGA 61.266 63.158 0.00 0.00 40.00 4.35
36 37 2.258591 CCACCTGTCGAGTCCACG 59.741 66.667 0.00 0.00 0.00 4.94
37 38 2.657237 CCCACCTGTCGAGTCCAC 59.343 66.667 0.00 0.00 0.00 4.02
38 39 3.311110 GCCCACCTGTCGAGTCCA 61.311 66.667 0.00 0.00 0.00 4.02
39 40 4.083862 GGCCCACCTGTCGAGTCC 62.084 72.222 0.00 0.00 0.00 3.85
40 41 4.083862 GGGCCCACCTGTCGAGTC 62.084 72.222 19.95 0.00 35.85 3.36
44 45 4.530857 GATCGGGCCCACCTGTCG 62.531 72.222 24.92 5.67 43.58 4.35
45 46 4.530857 CGATCGGGCCCACCTGTC 62.531 72.222 24.92 10.53 43.58 3.51
50 51 4.530857 CTGACCGATCGGGCCCAC 62.531 72.222 36.42 20.74 44.50 4.61
56 57 0.796312 CAACAAACCTGACCGATCGG 59.204 55.000 32.20 32.20 42.03 4.18
57 58 1.508632 ACAACAAACCTGACCGATCG 58.491 50.000 8.51 8.51 0.00 3.69
58 59 4.062991 ACTAACAACAAACCTGACCGATC 58.937 43.478 0.00 0.00 0.00 3.69
59 60 4.062991 GACTAACAACAAACCTGACCGAT 58.937 43.478 0.00 0.00 0.00 4.18
60 61 3.118702 TGACTAACAACAAACCTGACCGA 60.119 43.478 0.00 0.00 0.00 4.69
61 62 3.199677 TGACTAACAACAAACCTGACCG 58.800 45.455 0.00 0.00 0.00 4.79
62 63 5.063880 AGATGACTAACAACAAACCTGACC 58.936 41.667 0.00 0.00 0.00 4.02
63 64 5.179555 GGAGATGACTAACAACAAACCTGAC 59.820 44.000 0.00 0.00 0.00 3.51
64 65 5.305585 GGAGATGACTAACAACAAACCTGA 58.694 41.667 0.00 0.00 0.00 3.86
65 66 4.152402 CGGAGATGACTAACAACAAACCTG 59.848 45.833 0.00 0.00 0.00 4.00
66 67 4.315803 CGGAGATGACTAACAACAAACCT 58.684 43.478 0.00 0.00 0.00 3.50
67 68 3.435671 CCGGAGATGACTAACAACAAACC 59.564 47.826 0.00 0.00 0.00 3.27
68 69 4.312443 TCCGGAGATGACTAACAACAAAC 58.688 43.478 0.00 0.00 0.00 2.93
69 70 4.566004 CTCCGGAGATGACTAACAACAAA 58.434 43.478 28.21 0.00 0.00 2.83
70 71 3.616560 GCTCCGGAGATGACTAACAACAA 60.617 47.826 35.69 0.00 0.00 2.83
71 72 2.094182 GCTCCGGAGATGACTAACAACA 60.094 50.000 35.69 0.00 0.00 3.33
72 73 2.541556 GCTCCGGAGATGACTAACAAC 58.458 52.381 35.69 8.63 0.00 3.32
73 74 1.134367 CGCTCCGGAGATGACTAACAA 59.866 52.381 35.69 0.00 0.00 2.83
74 75 0.738975 CGCTCCGGAGATGACTAACA 59.261 55.000 35.69 0.00 0.00 2.41
75 76 3.553597 CGCTCCGGAGATGACTAAC 57.446 57.895 35.69 13.32 0.00 2.34
102 103 3.944650 TCTGTGCAGCAAGTGAGTAAAAA 59.055 39.130 0.00 0.00 0.00 1.94
103 104 3.540617 TCTGTGCAGCAAGTGAGTAAAA 58.459 40.909 0.00 0.00 0.00 1.52
104 105 3.192541 TCTGTGCAGCAAGTGAGTAAA 57.807 42.857 0.00 0.00 0.00 2.01
105 106 2.908688 TCTGTGCAGCAAGTGAGTAA 57.091 45.000 0.00 0.00 0.00 2.24
106 107 3.511540 ACTATCTGTGCAGCAAGTGAGTA 59.488 43.478 0.00 0.00 0.00 2.59
107 108 2.301296 ACTATCTGTGCAGCAAGTGAGT 59.699 45.455 0.00 3.12 0.00 3.41
108 109 2.671888 CACTATCTGTGCAGCAAGTGAG 59.328 50.000 16.25 10.66 40.35 3.51
109 110 2.613725 CCACTATCTGTGCAGCAAGTGA 60.614 50.000 21.08 9.97 44.92 3.41
110 111 1.736126 CCACTATCTGTGCAGCAAGTG 59.264 52.381 14.82 14.82 44.92 3.16
111 112 1.349026 ACCACTATCTGTGCAGCAAGT 59.651 47.619 0.00 0.00 44.92 3.16
112 113 2.105006 ACCACTATCTGTGCAGCAAG 57.895 50.000 0.00 0.00 44.92 4.01
113 114 2.566833 AACCACTATCTGTGCAGCAA 57.433 45.000 0.00 0.00 44.92 3.91
114 115 2.553602 CAAAACCACTATCTGTGCAGCA 59.446 45.455 0.00 0.00 44.92 4.41
115 116 2.554032 ACAAAACCACTATCTGTGCAGC 59.446 45.455 0.00 0.00 44.92 5.25
116 117 3.565482 ACACAAAACCACTATCTGTGCAG 59.435 43.478 0.00 0.00 44.92 4.41
117 118 3.314913 CACACAAAACCACTATCTGTGCA 59.685 43.478 0.62 0.00 44.92 4.57
118 119 3.563808 TCACACAAAACCACTATCTGTGC 59.436 43.478 0.62 0.00 44.92 4.57
119 120 5.749596 TTCACACAAAACCACTATCTGTG 57.250 39.130 0.00 0.00 45.80 3.66
120 121 6.959639 AATTCACACAAAACCACTATCTGT 57.040 33.333 0.00 0.00 0.00 3.41
121 122 7.169645 CCAAAATTCACACAAAACCACTATCTG 59.830 37.037 0.00 0.00 0.00 2.90
122 123 7.209475 CCAAAATTCACACAAAACCACTATCT 58.791 34.615 0.00 0.00 0.00 1.98
123 124 6.073819 GCCAAAATTCACACAAAACCACTATC 60.074 38.462 0.00 0.00 0.00 2.08
124 125 5.757808 GCCAAAATTCACACAAAACCACTAT 59.242 36.000 0.00 0.00 0.00 2.12
125 126 5.112686 GCCAAAATTCACACAAAACCACTA 58.887 37.500 0.00 0.00 0.00 2.74
126 127 3.938334 GCCAAAATTCACACAAAACCACT 59.062 39.130 0.00 0.00 0.00 4.00
127 128 3.686726 TGCCAAAATTCACACAAAACCAC 59.313 39.130 0.00 0.00 0.00 4.16
128 129 3.942829 TGCCAAAATTCACACAAAACCA 58.057 36.364 0.00 0.00 0.00 3.67
129 130 4.954092 TTGCCAAAATTCACACAAAACC 57.046 36.364 0.00 0.00 0.00 3.27
130 131 6.183359 CGTTTTTGCCAAAATTCACACAAAAC 60.183 34.615 3.01 0.00 36.90 2.43
131 132 5.853282 CGTTTTTGCCAAAATTCACACAAAA 59.147 32.000 3.01 0.00 34.35 2.44
132 133 5.385617 CGTTTTTGCCAAAATTCACACAAA 58.614 33.333 3.01 0.00 34.35 2.83
133 134 4.142816 CCGTTTTTGCCAAAATTCACACAA 60.143 37.500 3.01 0.00 34.35 3.33
134 135 3.372206 CCGTTTTTGCCAAAATTCACACA 59.628 39.130 3.01 0.00 34.35 3.72
135 136 3.372514 ACCGTTTTTGCCAAAATTCACAC 59.627 39.130 3.01 0.00 34.35 3.82
136 137 3.372206 CACCGTTTTTGCCAAAATTCACA 59.628 39.130 3.01 0.00 34.35 3.58
137 138 3.242576 CCACCGTTTTTGCCAAAATTCAC 60.243 43.478 3.01 0.00 34.35 3.18
138 139 2.939103 CCACCGTTTTTGCCAAAATTCA 59.061 40.909 3.01 0.00 34.35 2.57
139 140 2.286713 GCCACCGTTTTTGCCAAAATTC 60.287 45.455 3.01 0.14 34.35 2.17
140 141 1.673400 GCCACCGTTTTTGCCAAAATT 59.327 42.857 3.01 0.00 34.35 1.82
141 142 1.304254 GCCACCGTTTTTGCCAAAAT 58.696 45.000 3.01 0.00 34.35 1.82
142 143 0.036388 TGCCACCGTTTTTGCCAAAA 60.036 45.000 0.00 0.00 0.00 2.44
143 144 0.036388 TTGCCACCGTTTTTGCCAAA 60.036 45.000 0.00 0.00 0.00 3.28
144 145 0.179000 ATTGCCACCGTTTTTGCCAA 59.821 45.000 0.00 0.00 0.00 4.52
145 146 0.179000 AATTGCCACCGTTTTTGCCA 59.821 45.000 0.00 0.00 0.00 4.92
146 147 1.003008 CAAATTGCCACCGTTTTTGCC 60.003 47.619 0.00 0.00 0.00 4.52
147 148 1.668237 ACAAATTGCCACCGTTTTTGC 59.332 42.857 0.00 0.00 31.99 3.68
148 149 4.260415 GGTAACAAATTGCCACCGTTTTTG 60.260 41.667 0.00 0.00 40.20 2.44
149 150 3.872182 GGTAACAAATTGCCACCGTTTTT 59.128 39.130 0.00 0.00 40.20 1.94
150 151 3.459145 GGTAACAAATTGCCACCGTTTT 58.541 40.909 0.00 0.00 40.20 2.43
151 152 2.224090 GGGTAACAAATTGCCACCGTTT 60.224 45.455 9.56 0.00 42.16 3.60
152 153 1.341852 GGGTAACAAATTGCCACCGTT 59.658 47.619 9.56 0.00 42.16 4.44
153 154 0.963225 GGGTAACAAATTGCCACCGT 59.037 50.000 9.56 0.00 42.16 4.83
154 155 1.253100 AGGGTAACAAATTGCCACCG 58.747 50.000 9.56 0.00 42.16 4.94
155 156 2.165641 GCTAGGGTAACAAATTGCCACC 59.834 50.000 7.77 7.77 42.16 4.61
156 157 2.165641 GGCTAGGGTAACAAATTGCCAC 59.834 50.000 0.00 0.00 42.16 5.01
157 158 2.225142 TGGCTAGGGTAACAAATTGCCA 60.225 45.455 0.00 0.00 42.16 4.92
158 159 2.165641 GTGGCTAGGGTAACAAATTGCC 59.834 50.000 0.00 0.00 39.76 4.52
159 160 2.823154 TGTGGCTAGGGTAACAAATTGC 59.177 45.455 0.00 0.00 39.74 3.56
160 161 4.462483 ACATGTGGCTAGGGTAACAAATTG 59.538 41.667 0.00 0.00 39.74 2.32
161 162 4.462483 CACATGTGGCTAGGGTAACAAATT 59.538 41.667 18.51 0.00 39.74 1.82
162 163 4.016444 CACATGTGGCTAGGGTAACAAAT 58.984 43.478 18.51 0.00 39.74 2.32
163 164 3.073209 TCACATGTGGCTAGGGTAACAAA 59.927 43.478 25.16 0.00 39.74 2.83
164 165 2.640332 TCACATGTGGCTAGGGTAACAA 59.360 45.455 25.16 0.00 39.74 2.83
165 166 2.027561 GTCACATGTGGCTAGGGTAACA 60.028 50.000 23.08 0.00 32.01 2.41
166 167 2.629051 GTCACATGTGGCTAGGGTAAC 58.371 52.381 23.08 7.91 31.34 2.50
167 168 1.206132 CGTCACATGTGGCTAGGGTAA 59.794 52.381 26.71 1.34 31.96 2.85
168 169 0.821517 CGTCACATGTGGCTAGGGTA 59.178 55.000 26.71 2.10 31.96 3.69
169 170 1.596934 CGTCACATGTGGCTAGGGT 59.403 57.895 26.71 0.00 31.96 4.34
170 171 1.153369 CCGTCACATGTGGCTAGGG 60.153 63.158 26.71 17.32 31.96 3.53
171 172 0.036388 AACCGTCACATGTGGCTAGG 60.036 55.000 26.71 22.70 31.96 3.02
172 173 1.066858 AGAACCGTCACATGTGGCTAG 60.067 52.381 26.71 19.86 31.96 3.42
173 174 0.973632 AGAACCGTCACATGTGGCTA 59.026 50.000 26.71 5.21 31.96 3.93
174 175 0.973632 TAGAACCGTCACATGTGGCT 59.026 50.000 26.71 9.67 31.96 4.75
175 176 1.359848 CTAGAACCGTCACATGTGGC 58.640 55.000 25.16 22.98 0.00 5.01
176 177 2.007049 GCCTAGAACCGTCACATGTGG 61.007 57.143 25.16 12.41 0.00 4.17
177 178 1.337728 TGCCTAGAACCGTCACATGTG 60.338 52.381 20.18 20.18 0.00 3.21
178 179 0.973632 TGCCTAGAACCGTCACATGT 59.026 50.000 0.00 0.00 0.00 3.21
179 180 1.732259 GTTGCCTAGAACCGTCACATG 59.268 52.381 0.00 0.00 0.00 3.21
180 181 1.623811 AGTTGCCTAGAACCGTCACAT 59.376 47.619 0.00 0.00 0.00 3.21
181 182 1.045407 AGTTGCCTAGAACCGTCACA 58.955 50.000 0.00 0.00 0.00 3.58
182 183 2.165319 AAGTTGCCTAGAACCGTCAC 57.835 50.000 0.00 0.00 0.00 3.67
183 184 2.895404 AGTAAGTTGCCTAGAACCGTCA 59.105 45.455 0.00 0.00 0.00 4.35
184 185 3.589495 AGTAAGTTGCCTAGAACCGTC 57.411 47.619 0.00 0.00 0.00 4.79
185 186 4.202284 TGAAAGTAAGTTGCCTAGAACCGT 60.202 41.667 0.00 0.00 0.00 4.83
186 187 4.312443 TGAAAGTAAGTTGCCTAGAACCG 58.688 43.478 0.00 0.00 0.00 4.44
187 188 6.819397 AATGAAAGTAAGTTGCCTAGAACC 57.181 37.500 0.00 0.00 0.00 3.62
188 189 8.349983 TCAAAATGAAAGTAAGTTGCCTAGAAC 58.650 33.333 0.00 0.00 0.00 3.01
189 190 8.458573 TCAAAATGAAAGTAAGTTGCCTAGAA 57.541 30.769 0.00 0.00 0.00 2.10
190 191 8.458573 TTCAAAATGAAAGTAAGTTGCCTAGA 57.541 30.769 0.00 0.00 32.71 2.43
191 192 7.809806 CCTTCAAAATGAAAGTAAGTTGCCTAG 59.190 37.037 0.00 0.00 35.73 3.02
192 193 7.286775 ACCTTCAAAATGAAAGTAAGTTGCCTA 59.713 33.333 0.00 0.00 35.73 3.93
193 194 6.098266 ACCTTCAAAATGAAAGTAAGTTGCCT 59.902 34.615 0.00 0.00 35.73 4.75
194 195 6.280643 ACCTTCAAAATGAAAGTAAGTTGCC 58.719 36.000 0.00 0.00 35.73 4.52
195 196 6.420903 GGACCTTCAAAATGAAAGTAAGTTGC 59.579 38.462 0.00 0.00 35.73 4.17
196 197 7.716612 AGGACCTTCAAAATGAAAGTAAGTTG 58.283 34.615 0.00 0.00 35.73 3.16
197 198 7.780271 AGAGGACCTTCAAAATGAAAGTAAGTT 59.220 33.333 0.00 0.00 35.73 2.66
198 199 7.290813 AGAGGACCTTCAAAATGAAAGTAAGT 58.709 34.615 0.00 0.00 35.73 2.24
199 200 7.751768 AGAGGACCTTCAAAATGAAAGTAAG 57.248 36.000 0.00 0.00 35.73 2.34
200 201 9.284968 CTAAGAGGACCTTCAAAATGAAAGTAA 57.715 33.333 0.00 0.00 35.73 2.24
201 202 7.883311 CCTAAGAGGACCTTCAAAATGAAAGTA 59.117 37.037 0.00 0.00 37.67 2.24
202 203 6.717084 CCTAAGAGGACCTTCAAAATGAAAGT 59.283 38.462 0.00 0.00 37.67 2.66
203 204 6.942576 TCCTAAGAGGACCTTCAAAATGAAAG 59.057 38.462 0.00 0.00 40.06 2.62
204 205 6.848069 TCCTAAGAGGACCTTCAAAATGAAA 58.152 36.000 0.00 0.00 40.06 2.69
205 206 6.448369 TCCTAAGAGGACCTTCAAAATGAA 57.552 37.500 0.00 0.00 40.06 2.57
230 231 4.038282 TGTTTGTGCTCTGCATTCAAGAAT 59.962 37.500 0.00 0.00 41.91 2.40
231 232 3.380954 TGTTTGTGCTCTGCATTCAAGAA 59.619 39.130 0.00 0.00 41.91 2.52
232 233 2.950975 TGTTTGTGCTCTGCATTCAAGA 59.049 40.909 0.00 0.00 41.91 3.02
233 234 3.358707 TGTTTGTGCTCTGCATTCAAG 57.641 42.857 0.00 0.00 41.91 3.02
234 235 3.318557 TGATGTTTGTGCTCTGCATTCAA 59.681 39.130 0.00 0.00 41.91 2.69
235 236 2.885894 TGATGTTTGTGCTCTGCATTCA 59.114 40.909 0.00 0.00 41.91 2.57
236 237 3.564235 TGATGTTTGTGCTCTGCATTC 57.436 42.857 0.00 0.00 41.91 2.67
237 238 4.304110 CTTTGATGTTTGTGCTCTGCATT 58.696 39.130 0.00 0.00 41.91 3.56
238 239 3.859627 GCTTTGATGTTTGTGCTCTGCAT 60.860 43.478 0.00 0.00 41.91 3.96
239 240 2.544277 GCTTTGATGTTTGTGCTCTGCA 60.544 45.455 0.00 0.00 35.60 4.41
240 241 2.056577 GCTTTGATGTTTGTGCTCTGC 58.943 47.619 0.00 0.00 0.00 4.26
241 242 2.295349 AGGCTTTGATGTTTGTGCTCTG 59.705 45.455 0.00 0.00 0.00 3.35
242 243 2.555757 GAGGCTTTGATGTTTGTGCTCT 59.444 45.455 0.00 0.00 0.00 4.09
243 244 2.555757 AGAGGCTTTGATGTTTGTGCTC 59.444 45.455 0.00 0.00 0.00 4.26
244 245 2.590821 AGAGGCTTTGATGTTTGTGCT 58.409 42.857 0.00 0.00 0.00 4.40
245 246 3.375782 AAGAGGCTTTGATGTTTGTGC 57.624 42.857 0.00 0.00 0.00 4.57
246 247 5.471456 AGACTAAGAGGCTTTGATGTTTGTG 59.529 40.000 0.00 0.00 17.74 3.33
247 248 5.625150 AGACTAAGAGGCTTTGATGTTTGT 58.375 37.500 0.00 0.00 17.74 2.83
248 249 5.163913 CGAGACTAAGAGGCTTTGATGTTTG 60.164 44.000 0.00 0.00 30.20 2.93
249 250 4.932200 CGAGACTAAGAGGCTTTGATGTTT 59.068 41.667 0.00 0.00 30.20 2.83
250 251 4.220821 TCGAGACTAAGAGGCTTTGATGTT 59.779 41.667 0.00 0.00 30.20 2.71
251 252 3.764434 TCGAGACTAAGAGGCTTTGATGT 59.236 43.478 0.00 0.00 30.20 3.06
252 253 4.097135 TCTCGAGACTAAGAGGCTTTGATG 59.903 45.833 12.08 0.00 30.20 3.07
253 254 4.274147 TCTCGAGACTAAGAGGCTTTGAT 58.726 43.478 12.08 0.00 30.20 2.57
254 255 3.687125 TCTCGAGACTAAGAGGCTTTGA 58.313 45.455 12.08 0.00 30.20 2.69
255 256 4.647424 ATCTCGAGACTAAGAGGCTTTG 57.353 45.455 19.30 0.00 30.20 2.77
256 257 4.581409 GGTATCTCGAGACTAAGAGGCTTT 59.419 45.833 19.30 0.00 30.20 3.51
257 258 4.139038 GGTATCTCGAGACTAAGAGGCTT 58.861 47.826 19.30 0.00 30.20 4.35
258 259 3.746940 GGTATCTCGAGACTAAGAGGCT 58.253 50.000 19.30 0.39 35.22 4.58
259 260 2.481185 CGGTATCTCGAGACTAAGAGGC 59.519 54.545 19.30 1.92 35.34 4.70
260 261 3.992643 TCGGTATCTCGAGACTAAGAGG 58.007 50.000 19.30 3.89 35.34 3.69
270 271 2.994578 CGATAAGCTCTCGGTATCTCGA 59.005 50.000 10.05 0.00 37.60 4.04
271 272 3.377434 CGATAAGCTCTCGGTATCTCG 57.623 52.381 10.05 0.00 32.58 4.04
279 280 2.464865 CTCCAAACCGATAAGCTCTCG 58.535 52.381 10.77 10.77 35.92 4.04
280 281 2.431057 TCCTCCAAACCGATAAGCTCTC 59.569 50.000 0.00 0.00 0.00 3.20
281 282 2.467880 TCCTCCAAACCGATAAGCTCT 58.532 47.619 0.00 0.00 0.00 4.09
282 283 2.981859 TCCTCCAAACCGATAAGCTC 57.018 50.000 0.00 0.00 0.00 4.09
283 284 3.933861 ATTCCTCCAAACCGATAAGCT 57.066 42.857 0.00 0.00 0.00 3.74
284 285 4.983671 AAATTCCTCCAAACCGATAAGC 57.016 40.909 0.00 0.00 0.00 3.09
285 286 5.417580 TCCAAAATTCCTCCAAACCGATAAG 59.582 40.000 0.00 0.00 0.00 1.73
286 287 5.326069 TCCAAAATTCCTCCAAACCGATAA 58.674 37.500 0.00 0.00 0.00 1.75
287 288 4.924625 TCCAAAATTCCTCCAAACCGATA 58.075 39.130 0.00 0.00 0.00 2.92
288 289 3.763897 CTCCAAAATTCCTCCAAACCGAT 59.236 43.478 0.00 0.00 0.00 4.18
289 290 3.153919 CTCCAAAATTCCTCCAAACCGA 58.846 45.455 0.00 0.00 0.00 4.69
290 291 2.890945 ACTCCAAAATTCCTCCAAACCG 59.109 45.455 0.00 0.00 0.00 4.44
291 292 6.605471 AATACTCCAAAATTCCTCCAAACC 57.395 37.500 0.00 0.00 0.00 3.27
292 293 7.896811 AGAAATACTCCAAAATTCCTCCAAAC 58.103 34.615 0.00 0.00 0.00 2.93
293 294 9.020731 GTAGAAATACTCCAAAATTCCTCCAAA 57.979 33.333 0.00 0.00 0.00 3.28
294 295 8.167392 TGTAGAAATACTCCAAAATTCCTCCAA 58.833 33.333 0.00 0.00 0.00 3.53
295 296 7.695055 TGTAGAAATACTCCAAAATTCCTCCA 58.305 34.615 0.00 0.00 0.00 3.86
296 297 7.283354 CCTGTAGAAATACTCCAAAATTCCTCC 59.717 40.741 0.00 0.00 0.00 4.30
297 298 8.047310 TCCTGTAGAAATACTCCAAAATTCCTC 58.953 37.037 0.00 0.00 0.00 3.71
298 299 7.928873 TCCTGTAGAAATACTCCAAAATTCCT 58.071 34.615 0.00 0.00 0.00 3.36
299 300 8.753497 ATCCTGTAGAAATACTCCAAAATTCC 57.247 34.615 0.00 0.00 0.00 3.01
327 328 3.810941 ACGAACGCTCAACATAGGAAAAA 59.189 39.130 0.00 0.00 0.00 1.94
328 329 3.395639 ACGAACGCTCAACATAGGAAAA 58.604 40.909 0.00 0.00 0.00 2.29
329 330 3.034721 ACGAACGCTCAACATAGGAAA 57.965 42.857 0.00 0.00 0.00 3.13
330 331 2.736144 ACGAACGCTCAACATAGGAA 57.264 45.000 0.00 0.00 0.00 3.36
331 332 2.736144 AACGAACGCTCAACATAGGA 57.264 45.000 0.00 0.00 0.00 2.94
332 333 2.734606 TGAAACGAACGCTCAACATAGG 59.265 45.455 0.00 0.00 0.00 2.57
333 334 4.584029 ATGAAACGAACGCTCAACATAG 57.416 40.909 0.00 0.00 0.00 2.23
334 335 4.565166 CCTATGAAACGAACGCTCAACATA 59.435 41.667 0.00 0.00 0.00 2.29
335 336 3.370978 CCTATGAAACGAACGCTCAACAT 59.629 43.478 0.00 0.00 0.00 2.71
336 337 2.734606 CCTATGAAACGAACGCTCAACA 59.265 45.455 0.00 0.00 0.00 3.33
337 338 2.991190 TCCTATGAAACGAACGCTCAAC 59.009 45.455 0.00 0.00 0.00 3.18
338 339 3.306917 TCCTATGAAACGAACGCTCAA 57.693 42.857 0.00 0.00 0.00 3.02
339 340 3.057104 TCTTCCTATGAAACGAACGCTCA 60.057 43.478 0.00 0.00 0.00 4.26
340 341 3.508762 TCTTCCTATGAAACGAACGCTC 58.491 45.455 0.00 0.00 0.00 5.03
341 342 3.192844 TCTCTTCCTATGAAACGAACGCT 59.807 43.478 0.00 0.00 0.00 5.07
342 343 3.508762 TCTCTTCCTATGAAACGAACGC 58.491 45.455 0.00 0.00 0.00 4.84
343 344 5.061064 CACTTCTCTTCCTATGAAACGAACG 59.939 44.000 0.00 0.00 0.00 3.95
344 345 6.157211 TCACTTCTCTTCCTATGAAACGAAC 58.843 40.000 0.00 0.00 0.00 3.95
345 346 6.340962 TCACTTCTCTTCCTATGAAACGAA 57.659 37.500 0.00 0.00 0.00 3.85
346 347 5.977489 TCACTTCTCTTCCTATGAAACGA 57.023 39.130 0.00 0.00 0.00 3.85
347 348 7.708051 TCTATCACTTCTCTTCCTATGAAACG 58.292 38.462 0.00 0.00 0.00 3.60
350 351 8.865090 GGAATCTATCACTTCTCTTCCTATGAA 58.135 37.037 0.00 0.00 0.00 2.57
351 352 8.231007 AGGAATCTATCACTTCTCTTCCTATGA 58.769 37.037 0.00 0.00 39.28 2.15
352 353 8.421249 AGGAATCTATCACTTCTCTTCCTATG 57.579 38.462 0.00 0.00 39.28 2.23
354 355 9.581289 CTTAGGAATCTATCACTTCTCTTCCTA 57.419 37.037 4.47 4.47 40.91 2.94
355 356 7.508977 CCTTAGGAATCTATCACTTCTCTTCCT 59.491 40.741 0.00 6.23 42.60 3.36
356 357 7.507616 TCCTTAGGAATCTATCACTTCTCTTCC 59.492 40.741 0.00 0.00 0.00 3.46
357 358 8.357402 GTCCTTAGGAATCTATCACTTCTCTTC 58.643 40.741 0.98 0.00 31.38 2.87
358 359 8.065007 AGTCCTTAGGAATCTATCACTTCTCTT 58.935 37.037 0.98 0.00 31.38 2.85
359 360 7.591821 AGTCCTTAGGAATCTATCACTTCTCT 58.408 38.462 0.98 0.00 31.38 3.10
360 361 7.833285 AGTCCTTAGGAATCTATCACTTCTC 57.167 40.000 0.98 0.00 31.38 2.87
361 362 9.308000 CATAGTCCTTAGGAATCTATCACTTCT 57.692 37.037 3.88 0.00 31.38 2.85
362 363 9.084533 ACATAGTCCTTAGGAATCTATCACTTC 57.915 37.037 3.88 0.00 31.38 3.01
363 364 9.084533 GACATAGTCCTTAGGAATCTATCACTT 57.915 37.037 3.88 0.00 31.38 3.16
364 365 8.644374 GACATAGTCCTTAGGAATCTATCACT 57.356 38.462 3.88 0.00 31.38 3.41
381 382 8.598041 AGGAATTAGGTCAATATGGACATAGTC 58.402 37.037 12.38 9.93 39.59 2.59
382 383 8.511748 AGGAATTAGGTCAATATGGACATAGT 57.488 34.615 12.38 3.46 39.59 2.12
385 386 8.386264 CCTTAGGAATTAGGTCAATATGGACAT 58.614 37.037 12.38 7.61 39.59 3.06
386 387 7.570982 TCCTTAGGAATTAGGTCAATATGGACA 59.429 37.037 12.38 0.00 39.59 4.02
387 388 7.974504 TCCTTAGGAATTAGGTCAATATGGAC 58.025 38.462 0.00 1.10 37.06 4.02
388 389 8.757307 ATCCTTAGGAATTAGGTCAATATGGA 57.243 34.615 4.56 0.00 34.34 3.41
389 390 9.454859 GAATCCTTAGGAATTAGGTCAATATGG 57.545 37.037 4.56 0.00 34.34 2.74
390 391 9.454859 GGAATCCTTAGGAATTAGGTCAATATG 57.545 37.037 4.56 0.00 34.34 1.78
391 392 9.411848 AGGAATCCTTAGGAATTAGGTCAATAT 57.588 33.333 4.56 0.00 34.34 1.28
392 393 8.814448 AGGAATCCTTAGGAATTAGGTCAATA 57.186 34.615 4.56 0.00 34.34 1.90
393 394 7.713704 AGGAATCCTTAGGAATTAGGTCAAT 57.286 36.000 4.56 0.00 34.34 2.57
394 395 8.814448 ATAGGAATCCTTAGGAATTAGGTCAA 57.186 34.615 7.30 0.00 34.34 3.18
395 396 8.814448 AATAGGAATCCTTAGGAATTAGGTCA 57.186 34.615 7.30 0.00 34.34 4.02
418 419 9.933240 ATCCTCAGGAATTCATTCTTCTTAAAT 57.067 29.630 7.93 0.00 34.34 1.40
419 420 9.759473 AATCCTCAGGAATTCATTCTTCTTAAA 57.241 29.630 7.93 0.00 34.34 1.52
420 421 9.401058 GAATCCTCAGGAATTCATTCTTCTTAA 57.599 33.333 7.93 0.00 34.34 1.85
421 422 8.776119 AGAATCCTCAGGAATTCATTCTTCTTA 58.224 33.333 7.93 0.00 34.34 2.10
422 423 7.641249 AGAATCCTCAGGAATTCATTCTTCTT 58.359 34.615 7.93 0.00 34.34 2.52
423 424 7.210618 AGAATCCTCAGGAATTCATTCTTCT 57.789 36.000 7.93 0.00 34.34 2.85
424 425 7.878547 AAGAATCCTCAGGAATTCATTCTTC 57.121 36.000 17.20 2.98 33.45 2.87
425 426 8.555729 ACTAAGAATCCTCAGGAATTCATTCTT 58.444 33.333 22.49 22.49 38.64 2.52
426 427 8.100135 ACTAAGAATCCTCAGGAATTCATTCT 57.900 34.615 7.93 8.89 34.34 2.40
431 432 9.936759 CCTAATACTAAGAATCCTCAGGAATTC 57.063 37.037 0.00 2.55 34.34 2.17
432 433 9.453830 ACCTAATACTAAGAATCCTCAGGAATT 57.546 33.333 0.00 0.00 34.34 2.17
433 434 8.875168 CACCTAATACTAAGAATCCTCAGGAAT 58.125 37.037 0.00 0.00 34.34 3.01
434 435 8.065627 TCACCTAATACTAAGAATCCTCAGGAA 58.934 37.037 0.00 0.00 34.34 3.36
435 436 7.592736 TCACCTAATACTAAGAATCCTCAGGA 58.407 38.462 0.00 0.00 35.55 3.86
436 437 7.726291 TCTCACCTAATACTAAGAATCCTCAGG 59.274 40.741 0.00 0.00 0.00 3.86
437 438 8.573035 GTCTCACCTAATACTAAGAATCCTCAG 58.427 40.741 0.00 0.00 0.00 3.35
438 439 7.506261 GGTCTCACCTAATACTAAGAATCCTCA 59.494 40.741 0.00 0.00 34.73 3.86
439 440 7.888424 GGTCTCACCTAATACTAAGAATCCTC 58.112 42.308 0.00 0.00 34.73 3.71
440 441 7.842887 GGTCTCACCTAATACTAAGAATCCT 57.157 40.000 0.00 0.00 34.73 3.24
456 457 5.012893 AGGAATTTTTCATCAGGTCTCACC 58.987 41.667 0.00 0.00 38.99 4.02
457 458 7.687941 TTAGGAATTTTTCATCAGGTCTCAC 57.312 36.000 0.00 0.00 0.00 3.51
458 459 8.742777 CAATTAGGAATTTTTCATCAGGTCTCA 58.257 33.333 0.00 0.00 0.00 3.27
459 460 8.960591 TCAATTAGGAATTTTTCATCAGGTCTC 58.039 33.333 0.00 0.00 0.00 3.36
460 461 8.884124 TCAATTAGGAATTTTTCATCAGGTCT 57.116 30.769 0.00 0.00 0.00 3.85
461 462 9.578439 CTTCAATTAGGAATTTTTCATCAGGTC 57.422 33.333 0.00 0.00 0.00 3.85
462 463 9.093458 ACTTCAATTAGGAATTTTTCATCAGGT 57.907 29.630 0.00 0.00 0.00 4.00
463 464 9.362539 CACTTCAATTAGGAATTTTTCATCAGG 57.637 33.333 0.00 0.00 0.00 3.86
471 472 9.696917 GTCATGTTCACTTCAATTAGGAATTTT 57.303 29.630 0.00 0.00 0.00 1.82
472 473 8.859090 TGTCATGTTCACTTCAATTAGGAATTT 58.141 29.630 0.00 0.00 0.00 1.82
473 474 8.408043 TGTCATGTTCACTTCAATTAGGAATT 57.592 30.769 0.00 0.00 0.00 2.17
474 475 8.585471 ATGTCATGTTCACTTCAATTAGGAAT 57.415 30.769 0.00 0.00 0.00 3.01
475 476 8.408043 AATGTCATGTTCACTTCAATTAGGAA 57.592 30.769 0.00 0.00 0.00 3.36
476 477 8.408043 AAATGTCATGTTCACTTCAATTAGGA 57.592 30.769 0.00 0.00 0.00 2.94
477 478 8.298854 TGAAATGTCATGTTCACTTCAATTAGG 58.701 33.333 12.24 0.00 30.15 2.69
478 479 9.681692 TTGAAATGTCATGTTCACTTCAATTAG 57.318 29.630 18.21 0.00 36.56 1.73
480 481 9.199982 GATTGAAATGTCATGTTCACTTCAATT 57.800 29.630 26.07 17.67 45.25 2.32
481 482 8.361889 TGATTGAAATGTCATGTTCACTTCAAT 58.638 29.630 25.86 25.86 46.69 2.57
482 483 7.714703 TGATTGAAATGTCATGTTCACTTCAA 58.285 30.769 21.53 21.53 42.28 2.69
483 484 7.274603 TGATTGAAATGTCATGTTCACTTCA 57.725 32.000 11.18 11.18 33.58 3.02
484 485 8.752766 AATGATTGAAATGTCATGTTCACTTC 57.247 30.769 8.87 0.66 35.38 3.01
486 487 9.630098 GTAAATGATTGAAATGTCATGTTCACT 57.370 29.630 8.87 5.62 35.38 3.41
487 488 9.630098 AGTAAATGATTGAAATGTCATGTTCAC 57.370 29.630 8.87 0.00 35.38 3.18
530 531 9.554724 GCTCATTCGTTTTACAATATTCTCAAA 57.445 29.630 0.00 0.00 0.00 2.69
531 532 8.181573 GGCTCATTCGTTTTACAATATTCTCAA 58.818 33.333 0.00 0.00 0.00 3.02
532 533 7.465379 CGGCTCATTCGTTTTACAATATTCTCA 60.465 37.037 0.00 0.00 0.00 3.27
533 534 6.846283 CGGCTCATTCGTTTTACAATATTCTC 59.154 38.462 0.00 0.00 0.00 2.87
534 535 6.315393 ACGGCTCATTCGTTTTACAATATTCT 59.685 34.615 0.00 0.00 37.61 2.40
535 536 6.483687 ACGGCTCATTCGTTTTACAATATTC 58.516 36.000 0.00 0.00 37.61 1.75
536 537 6.431198 ACGGCTCATTCGTTTTACAATATT 57.569 33.333 0.00 0.00 37.61 1.28
537 538 6.431198 AACGGCTCATTCGTTTTACAATAT 57.569 33.333 0.00 0.00 46.85 1.28
538 539 5.866335 AACGGCTCATTCGTTTTACAATA 57.134 34.783 0.00 0.00 46.85 1.90
539 540 4.759516 AACGGCTCATTCGTTTTACAAT 57.240 36.364 0.00 0.00 46.85 2.71
540 541 4.989797 TCTAACGGCTCATTCGTTTTACAA 59.010 37.500 7.16 0.00 46.85 2.41
541 542 4.558178 TCTAACGGCTCATTCGTTTTACA 58.442 39.130 7.16 0.00 46.85 2.41
542 543 5.713822 ATCTAACGGCTCATTCGTTTTAC 57.286 39.130 7.16 0.00 46.85 2.01
543 544 6.982141 ACATATCTAACGGCTCATTCGTTTTA 59.018 34.615 7.16 0.00 46.85 1.52
544 545 5.815740 ACATATCTAACGGCTCATTCGTTTT 59.184 36.000 7.16 0.00 46.85 2.43
545 546 5.357257 ACATATCTAACGGCTCATTCGTTT 58.643 37.500 7.16 0.00 46.85 3.60
547 548 4.585955 ACATATCTAACGGCTCATTCGT 57.414 40.909 0.00 0.00 43.14 3.85
548 549 5.700846 AGTACATATCTAACGGCTCATTCG 58.299 41.667 0.00 0.00 0.00 3.34
549 550 6.924060 ACAAGTACATATCTAACGGCTCATTC 59.076 38.462 0.00 0.00 0.00 2.67
550 551 6.817184 ACAAGTACATATCTAACGGCTCATT 58.183 36.000 0.00 0.00 0.00 2.57
551 552 6.406692 ACAAGTACATATCTAACGGCTCAT 57.593 37.500 0.00 0.00 0.00 2.90
552 553 5.847111 ACAAGTACATATCTAACGGCTCA 57.153 39.130 0.00 0.00 0.00 4.26
553 554 7.591165 TGATACAAGTACATATCTAACGGCTC 58.409 38.462 0.00 0.00 0.00 4.70
554 555 7.520451 TGATACAAGTACATATCTAACGGCT 57.480 36.000 0.00 0.00 0.00 5.52
555 556 8.485591 GTTTGATACAAGTACATATCTAACGGC 58.514 37.037 15.88 0.00 35.42 5.68
559 560 9.524106 CCACGTTTGATACAAGTACATATCTAA 57.476 33.333 0.00 0.83 0.00 2.10
560 561 8.905850 TCCACGTTTGATACAAGTACATATCTA 58.094 33.333 0.00 0.00 0.00 1.98
561 562 7.778083 TCCACGTTTGATACAAGTACATATCT 58.222 34.615 0.00 0.00 0.00 1.98
562 563 7.306632 GCTCCACGTTTGATACAAGTACATATC 60.307 40.741 0.00 0.48 0.00 1.63
563 564 6.479001 GCTCCACGTTTGATACAAGTACATAT 59.521 38.462 0.00 0.00 0.00 1.78
564 565 5.808540 GCTCCACGTTTGATACAAGTACATA 59.191 40.000 0.00 0.00 0.00 2.29
565 566 4.630069 GCTCCACGTTTGATACAAGTACAT 59.370 41.667 0.00 0.00 0.00 2.29
566 567 3.991773 GCTCCACGTTTGATACAAGTACA 59.008 43.478 0.00 0.00 0.00 2.90
567 568 3.060363 CGCTCCACGTTTGATACAAGTAC 59.940 47.826 0.00 0.00 36.87 2.73
568 569 3.057386 TCGCTCCACGTTTGATACAAGTA 60.057 43.478 0.00 0.00 44.19 2.24
569 570 2.066262 CGCTCCACGTTTGATACAAGT 58.934 47.619 0.00 0.00 36.87 3.16
570 571 2.092211 GTCGCTCCACGTTTGATACAAG 59.908 50.000 0.00 0.00 44.19 3.16
571 572 2.063266 GTCGCTCCACGTTTGATACAA 58.937 47.619 0.00 0.00 44.19 2.41
572 573 1.705256 GTCGCTCCACGTTTGATACA 58.295 50.000 0.00 0.00 44.19 2.29
573 574 0.638746 CGTCGCTCCACGTTTGATAC 59.361 55.000 0.00 0.00 44.19 2.24
574 575 0.522626 TCGTCGCTCCACGTTTGATA 59.477 50.000 0.00 0.00 44.19 2.15
575 576 0.108804 ATCGTCGCTCCACGTTTGAT 60.109 50.000 0.00 0.00 44.19 2.57
576 577 1.006825 CATCGTCGCTCCACGTTTGA 61.007 55.000 0.00 0.00 44.19 2.69
577 578 1.006825 TCATCGTCGCTCCACGTTTG 61.007 55.000 0.00 0.00 44.19 2.93
578 579 0.108804 ATCATCGTCGCTCCACGTTT 60.109 50.000 0.00 0.00 44.19 3.60
579 580 0.736636 TATCATCGTCGCTCCACGTT 59.263 50.000 0.00 0.00 44.19 3.99
580 581 0.736636 TTATCATCGTCGCTCCACGT 59.263 50.000 0.00 0.00 44.19 4.49
581 582 1.835121 TTTATCATCGTCGCTCCACG 58.165 50.000 0.00 0.00 45.62 4.94
582 583 3.184581 GGATTTTATCATCGTCGCTCCAC 59.815 47.826 0.00 0.00 0.00 4.02
583 584 3.069586 AGGATTTTATCATCGTCGCTCCA 59.930 43.478 0.00 0.00 0.00 3.86
584 585 3.654414 AGGATTTTATCATCGTCGCTCC 58.346 45.455 0.00 0.00 0.00 4.70
585 586 4.299155 TGAGGATTTTATCATCGTCGCTC 58.701 43.478 0.00 0.00 42.63 5.03
586 587 4.302455 CTGAGGATTTTATCATCGTCGCT 58.698 43.478 0.00 0.00 42.63 4.93
587 588 3.120854 GCTGAGGATTTTATCATCGTCGC 60.121 47.826 0.00 0.00 42.63 5.19
588 589 3.430218 GGCTGAGGATTTTATCATCGTCG 59.570 47.826 0.00 0.00 42.63 5.12
589 590 4.380531 TGGCTGAGGATTTTATCATCGTC 58.619 43.478 0.00 0.00 42.63 4.20
590 591 4.422073 TGGCTGAGGATTTTATCATCGT 57.578 40.909 0.00 0.00 42.63 3.73
591 592 5.756195 TTTGGCTGAGGATTTTATCATCG 57.244 39.130 0.00 0.00 42.63 3.84
592 593 6.860023 CGATTTTGGCTGAGGATTTTATCATC 59.140 38.462 0.00 0.00 40.30 2.92
593 594 6.322201 ACGATTTTGGCTGAGGATTTTATCAT 59.678 34.615 0.00 0.00 0.00 2.45
594 595 5.652014 ACGATTTTGGCTGAGGATTTTATCA 59.348 36.000 0.00 0.00 0.00 2.15
595 596 6.136541 ACGATTTTGGCTGAGGATTTTATC 57.863 37.500 0.00 0.00 0.00 1.75
596 597 6.405842 GGAACGATTTTGGCTGAGGATTTTAT 60.406 38.462 0.00 0.00 0.00 1.40
597 598 5.105917 GGAACGATTTTGGCTGAGGATTTTA 60.106 40.000 0.00 0.00 0.00 1.52
598 599 4.321974 GGAACGATTTTGGCTGAGGATTTT 60.322 41.667 0.00 0.00 0.00 1.82
599 600 3.193479 GGAACGATTTTGGCTGAGGATTT 59.807 43.478 0.00 0.00 0.00 2.17
600 601 2.755103 GGAACGATTTTGGCTGAGGATT 59.245 45.455 0.00 0.00 0.00 3.01
601 602 2.290896 TGGAACGATTTTGGCTGAGGAT 60.291 45.455 0.00 0.00 0.00 3.24
602 603 1.073125 TGGAACGATTTTGGCTGAGGA 59.927 47.619 0.00 0.00 0.00 3.71
603 604 1.533625 TGGAACGATTTTGGCTGAGG 58.466 50.000 0.00 0.00 0.00 3.86
604 605 3.308530 GTTTGGAACGATTTTGGCTGAG 58.691 45.455 0.00 0.00 0.00 3.35
605 606 3.363341 GTTTGGAACGATTTTGGCTGA 57.637 42.857 0.00 0.00 0.00 4.26
614 615 7.915488 TGTGAGTACAACCGTTTGGAACGAT 62.915 44.000 14.12 0.00 45.05 3.73
615 616 6.700345 TGTGAGTACAACCGTTTGGAACGA 62.700 45.833 14.12 0.00 45.05 3.85
616 617 4.528551 TGTGAGTACAACCGTTTGGAACG 61.529 47.826 6.25 6.25 43.34 3.95
617 618 2.937799 TGTGAGTACAACCGTTTGGAAC 59.062 45.455 0.00 0.00 37.00 3.62
618 619 2.937799 GTGTGAGTACAACCGTTTGGAA 59.062 45.455 0.00 0.00 38.82 3.53
619 620 2.168936 AGTGTGAGTACAACCGTTTGGA 59.831 45.455 0.00 0.00 38.82 3.53
620 621 2.557317 AGTGTGAGTACAACCGTTTGG 58.443 47.619 0.00 0.00 38.82 3.28
621 622 4.365723 ACTAGTGTGAGTACAACCGTTTG 58.634 43.478 0.00 0.00 38.82 2.93
622 623 4.660789 ACTAGTGTGAGTACAACCGTTT 57.339 40.909 0.00 0.00 38.82 3.60
623 624 5.972107 ATACTAGTGTGAGTACAACCGTT 57.028 39.130 5.39 0.00 38.82 4.44
624 625 6.430925 TGTTATACTAGTGTGAGTACAACCGT 59.569 38.462 5.39 0.00 38.16 4.83
625 626 6.845302 TGTTATACTAGTGTGAGTACAACCG 58.155 40.000 5.39 0.00 38.16 4.44
626 627 9.480053 TTTTGTTATACTAGTGTGAGTACAACC 57.520 33.333 5.39 0.00 38.16 3.77
645 646 6.858993 GGCGTGATCAACTATTTGTTTTGTTA 59.141 34.615 0.00 0.00 36.63 2.41
649 650 4.023536 ACGGCGTGATCAACTATTTGTTTT 60.024 37.500 13.76 0.00 36.63 2.43
650 651 3.500680 ACGGCGTGATCAACTATTTGTTT 59.499 39.130 13.76 0.00 36.63 2.83
659 660 2.198406 TGCTTATACGGCGTGATCAAC 58.802 47.619 24.86 8.27 0.00 3.18
670 671 5.615544 GCAACTAGATTGGCATGCTTATACG 60.616 44.000 18.92 3.88 38.88 3.06
677 678 3.057736 CCTATGCAACTAGATTGGCATGC 60.058 47.826 9.90 9.90 38.88 4.06
693 694 7.012421 AGAGAAAACGGTTTATGATTCCTATGC 59.988 37.037 6.53 0.00 0.00 3.14
711 712 4.394920 TGACCAAGTGAACACAGAGAAAAC 59.605 41.667 7.68 0.00 0.00 2.43
714 715 3.904800 TGACCAAGTGAACACAGAGAA 57.095 42.857 7.68 0.00 0.00 2.87
715 716 3.494924 CCATGACCAAGTGAACACAGAGA 60.495 47.826 7.68 0.00 0.00 3.10
716 717 2.810274 CCATGACCAAGTGAACACAGAG 59.190 50.000 7.68 0.00 0.00 3.35
717 718 2.437651 TCCATGACCAAGTGAACACAGA 59.562 45.455 7.68 0.00 0.00 3.41
805 814 1.618640 GAAACTGCGTCCAGAGCGTC 61.619 60.000 0.00 0.00 41.77 5.19
867 885 2.613133 GCATGATGAGAGAGGCAAAGTC 59.387 50.000 0.00 0.00 0.00 3.01
877 895 0.390492 TAGCGTGGGCATGATGAGAG 59.610 55.000 0.00 0.00 43.41 3.20
878 896 1.051008 ATAGCGTGGGCATGATGAGA 58.949 50.000 0.00 0.00 43.41 3.27
892 8943 6.479331 GGTTTAGTCCTCTCCTTTTTATAGCG 59.521 42.308 0.00 0.00 0.00 4.26
915 8966 0.044702 TGGTGATGATGGGGAGAGGT 59.955 55.000 0.00 0.00 0.00 3.85
1417 9526 9.060347 CCTCCTTATTCGTACTACATACAACTA 57.940 37.037 0.00 0.00 32.79 2.24
1418 9527 7.559170 ACCTCCTTATTCGTACTACATACAACT 59.441 37.037 0.00 0.00 32.79 3.16
1419 9528 7.646922 CACCTCCTTATTCGTACTACATACAAC 59.353 40.741 0.00 0.00 32.79 3.32
1420 9529 7.682741 GCACCTCCTTATTCGTACTACATACAA 60.683 40.741 0.00 0.00 32.79 2.41
1421 9530 6.238842 GCACCTCCTTATTCGTACTACATACA 60.239 42.308 0.00 0.00 32.79 2.29
1422 9531 6.016443 AGCACCTCCTTATTCGTACTACATAC 60.016 42.308 0.00 0.00 0.00 2.39
1423 9532 6.066690 AGCACCTCCTTATTCGTACTACATA 58.933 40.000 0.00 0.00 0.00 2.29
1424 9533 4.894114 AGCACCTCCTTATTCGTACTACAT 59.106 41.667 0.00 0.00 0.00 2.29
1425 9534 4.275810 AGCACCTCCTTATTCGTACTACA 58.724 43.478 0.00 0.00 0.00 2.74
1736 9857 6.145338 TGGCAAAACTTATTTGAACGGTTA 57.855 33.333 5.17 0.00 0.00 2.85
1784 9906 4.901520 GCGTCCGGACCGATCGAC 62.902 72.222 28.52 18.89 0.00 4.20
1946 10421 0.394762 ACATGAATGCGGTGCCTCAT 60.395 50.000 0.00 0.00 32.71 2.90
2126 10606 2.436646 CAAGCCGATGCGAAGGGT 60.437 61.111 0.00 0.00 44.33 4.34
2236 10719 2.083774 GAACCATGACTTCGGCATCAA 58.916 47.619 0.00 0.00 0.00 2.57
2237 10720 1.278985 AGAACCATGACTTCGGCATCA 59.721 47.619 0.00 0.00 0.00 3.07
2266 10749 4.643387 GCCACCGCCTCCAACTGT 62.643 66.667 0.00 0.00 0.00 3.55
2271 10754 2.361104 GAATTGCCACCGCCTCCA 60.361 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.