Multiple sequence alignment - TraesCS3D01G315000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G315000 chr3D 100.000 5205 0 0 1 5205 428766273 428761069 0.000000e+00 9612.0
1 TraesCS3D01G315000 chr3D 80.460 174 20 10 141 305 296544530 296544698 2.550000e-23 121.0
2 TraesCS3D01G315000 chr3B 93.236 2735 104 50 1747 4452 560597440 560594758 0.000000e+00 3951.0
3 TraesCS3D01G315000 chr3B 94.435 1779 42 28 1 1755 560599309 560597564 0.000000e+00 2684.0
4 TraesCS3D01G315000 chr3B 81.522 460 28 17 3756 4204 782449841 782449428 5.030000e-85 326.0
5 TraesCS3D01G315000 chr3B 87.379 206 25 1 1153 1358 782429858 782430062 8.710000e-58 235.0
6 TraesCS3D01G315000 chr3A 90.842 2566 113 51 1971 4467 557004595 557007107 0.000000e+00 3325.0
7 TraesCS3D01G315000 chr3A 88.346 1596 89 37 234 1797 557002887 557004417 0.000000e+00 1827.0
8 TraesCS3D01G315000 chr3A 86.378 323 38 4 4882 5203 557010400 557010717 1.070000e-91 348.0
9 TraesCS3D01G315000 chr3A 92.140 229 16 2 1 228 557002412 557002639 6.500000e-84 322.0
10 TraesCS3D01G315000 chr1B 90.684 526 43 5 3683 4204 561499171 561499694 0.000000e+00 695.0
11 TraesCS3D01G315000 chr1B 90.588 425 40 0 3156 3580 561498654 561499078 9.780000e-157 564.0
12 TraesCS3D01G315000 chr1B 86.161 224 27 3 2357 2578 561498016 561498237 6.740000e-59 239.0
13 TraesCS3D01G315000 chr1A 90.476 525 46 3 3683 4204 512650948 512651471 0.000000e+00 689.0
14 TraesCS3D01G315000 chr1A 90.588 425 40 0 3156 3580 512650419 512650843 9.780000e-157 564.0
15 TraesCS3D01G315000 chr1A 87.054 224 25 3 2357 2578 512649795 512650016 3.110000e-62 250.0
16 TraesCS3D01G315000 chr1D 90.286 525 47 3 3683 4204 415286260 415286783 0.000000e+00 684.0
17 TraesCS3D01G315000 chr1D 90.588 425 40 0 3156 3580 415285755 415286179 9.780000e-157 564.0
18 TraesCS3D01G315000 chr1D 91.667 192 16 0 1163 1354 415281845 415282036 3.090000e-67 267.0
19 TraesCS3D01G315000 chr1D 87.054 224 25 3 2357 2578 415285126 415285347 3.110000e-62 250.0
20 TraesCS3D01G315000 chr5D 76.190 399 86 8 4806 5201 474548599 474548991 8.840000e-48 202.0
21 TraesCS3D01G315000 chr5D 76.216 370 78 10 3697 4061 469720130 469720494 2.470000e-43 187.0
22 TraesCS3D01G315000 chr5D 92.727 55 3 1 4989 5043 380023745 380023798 1.550000e-10 78.7
23 TraesCS3D01G315000 chr7B 74.457 368 87 7 3697 4061 221891407 221891044 9.030000e-33 152.0
24 TraesCS3D01G315000 chr7B 86.735 98 10 3 128 224 120735643 120735738 7.130000e-19 106.0
25 TraesCS3D01G315000 chr2B 77.419 248 51 5 3816 4061 113195265 113195509 5.430000e-30 143.0
26 TraesCS3D01G315000 chr2B 89.773 88 6 3 141 226 778170938 778171024 5.510000e-20 110.0
27 TraesCS3D01G315000 chr2B 77.647 170 26 11 142 303 492708288 492708453 5.550000e-15 93.5
28 TraesCS3D01G315000 chr6A 94.805 77 4 0 145 221 371331099 371331175 2.550000e-23 121.0
29 TraesCS3D01G315000 chr7D 90.000 90 6 3 134 221 383267155 383267067 4.260000e-21 113.0
30 TraesCS3D01G315000 chr7D 94.231 52 2 1 4992 5043 593004630 593004580 1.550000e-10 78.7
31 TraesCS3D01G315000 chr6B 91.566 83 6 1 145 226 620896194 620896112 4.260000e-21 113.0
32 TraesCS3D01G315000 chr4D 89.773 88 7 2 145 231 490615871 490615957 1.530000e-20 111.0
33 TraesCS3D01G315000 chr2D 89.706 68 6 1 4976 5043 629616591 629616525 9.290000e-13 86.1
34 TraesCS3D01G315000 chr2D 95.745 47 0 2 4996 5042 601242242 601242198 2.010000e-09 75.0
35 TraesCS3D01G315000 chr5B 89.394 66 6 1 4978 5043 512275688 512275624 1.200000e-11 82.4
36 TraesCS3D01G315000 chrUn 87.879 66 7 1 4978 5043 326983727 326983791 5.590000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G315000 chr3D 428761069 428766273 5204 True 9612.000000 9612 100.000000 1 5205 1 chr3D.!!$R1 5204
1 TraesCS3D01G315000 chr3B 560594758 560599309 4551 True 3317.500000 3951 93.835500 1 4452 2 chr3B.!!$R2 4451
2 TraesCS3D01G315000 chr3A 557002412 557010717 8305 False 1455.500000 3325 89.426500 1 5203 4 chr3A.!!$F1 5202
3 TraesCS3D01G315000 chr1B 561498016 561499694 1678 False 499.333333 695 89.144333 2357 4204 3 chr1B.!!$F1 1847
4 TraesCS3D01G315000 chr1A 512649795 512651471 1676 False 501.000000 689 89.372667 2357 4204 3 chr1A.!!$F1 1847
5 TraesCS3D01G315000 chr1D 415281845 415286783 4938 False 441.250000 684 89.898750 1163 4204 4 chr1D.!!$F1 3041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 1108 0.321671 ATCGTATTGGCGCCATAGCT 59.678 50.0 33.25 17.62 36.6 3.32 F
1802 2268 0.033796 CTCCTGGCAATGGTGGATGT 60.034 55.0 0.00 0.00 0.0 3.06 F
1985 2491 0.177836 TACATGGTGATGGTGCTCCG 59.822 55.0 0.00 0.00 36.3 4.63 F
3143 6265 0.106708 ATCGTTGTGTCTGTGCCTGT 59.893 50.0 0.00 0.00 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2642 0.251916 TATCGGTGGGACCTTTGCTG 59.748 55.0 0.0 0.0 35.66 4.41 R
3125 6247 0.107897 AACAGGCACAGACACAACGA 60.108 50.0 0.0 0.0 0.00 3.85 R
3160 6292 0.251121 TGCTCGCCAGATTCCCAAAA 60.251 50.0 0.0 0.0 0.00 2.44 R
4859 10120 0.385751 GGCTCCTCGATCATCGTCAA 59.614 55.0 7.0 0.0 41.35 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.106908 CGATGAACTCACTTTCTCCCTTTTC 60.107 44.000 0.00 0.00 0.00 2.29
134 135 0.680921 CCGGGGCATCTTTCATGTGT 60.681 55.000 0.00 0.00 0.00 3.72
224 226 9.915629 ACGGAGTAAAATGAGTGAATCTATATC 57.084 33.333 0.00 0.00 41.94 1.63
698 952 0.738975 CCGCTGTCCTCATCGTCTAA 59.261 55.000 0.00 0.00 32.30 2.10
703 958 3.735514 GCTGTCCTCATCGTCTAAGTTCC 60.736 52.174 0.00 0.00 0.00 3.62
713 968 1.002990 CTAAGTTCCCCCGCCGTTT 60.003 57.895 0.00 0.00 0.00 3.60
719 974 4.733542 CCCCCGCCGTTTCCACAT 62.734 66.667 0.00 0.00 0.00 3.21
721 976 3.496131 CCCGCCGTTTCCACATCG 61.496 66.667 0.00 0.00 0.00 3.84
722 977 2.740826 CCGCCGTTTCCACATCGT 60.741 61.111 0.00 0.00 0.00 3.73
724 979 1.736645 CGCCGTTTCCACATCGTCT 60.737 57.895 0.00 0.00 0.00 4.18
725 980 0.457166 CGCCGTTTCCACATCGTCTA 60.457 55.000 0.00 0.00 0.00 2.59
726 981 0.997196 GCCGTTTCCACATCGTCTAC 59.003 55.000 0.00 0.00 0.00 2.59
832 1108 0.321671 ATCGTATTGGCGCCATAGCT 59.678 50.000 33.25 17.62 36.60 3.32
833 1109 0.963225 TCGTATTGGCGCCATAGCTA 59.037 50.000 33.25 16.35 36.60 3.32
834 1110 1.067846 TCGTATTGGCGCCATAGCTAG 60.068 52.381 33.25 19.18 36.60 3.42
835 1111 1.079503 GTATTGGCGCCATAGCTAGC 58.920 55.000 33.25 6.62 36.60 3.42
837 1113 0.976641 ATTGGCGCCATAGCTAGCTA 59.023 50.000 33.25 26.09 36.60 3.32
838 1114 0.976641 TTGGCGCCATAGCTAGCTAT 59.023 50.000 33.25 28.08 39.60 2.97
839 1115 1.847328 TGGCGCCATAGCTAGCTATA 58.153 50.000 31.75 16.09 37.16 1.31
841 1117 3.562182 TGGCGCCATAGCTAGCTATATA 58.438 45.455 31.75 12.06 37.16 0.86
842 1118 4.152647 TGGCGCCATAGCTAGCTATATAT 58.847 43.478 31.75 13.86 37.16 0.86
843 1119 4.218635 TGGCGCCATAGCTAGCTATATATC 59.781 45.833 31.75 21.32 37.16 1.63
844 1120 4.407818 GCGCCATAGCTAGCTATATATCG 58.592 47.826 31.75 28.17 37.16 2.92
845 1121 4.083217 GCGCCATAGCTAGCTATATATCGT 60.083 45.833 31.75 11.06 37.16 3.73
846 1122 5.121925 GCGCCATAGCTAGCTATATATCGTA 59.878 44.000 31.75 8.66 37.16 3.43
847 1123 6.183360 GCGCCATAGCTAGCTATATATCGTAT 60.183 42.308 31.75 10.62 37.16 3.06
848 1124 7.403421 CGCCATAGCTAGCTATATATCGTATC 58.597 42.308 31.75 14.22 37.16 2.24
849 1125 7.403421 GCCATAGCTAGCTATATATCGTATCG 58.597 42.308 31.75 17.46 37.16 2.92
850 1126 7.064847 GCCATAGCTAGCTATATATCGTATCGT 59.935 40.741 31.75 8.23 37.16 3.73
851 1127 8.384365 CCATAGCTAGCTATATATCGTATCGTG 58.616 40.741 31.75 18.29 37.16 4.35
852 1128 6.230849 AGCTAGCTATATATCGTATCGTGC 57.769 41.667 17.69 0.00 0.00 5.34
853 1129 5.992829 AGCTAGCTATATATCGTATCGTGCT 59.007 40.000 17.69 0.00 0.00 4.40
854 1130 7.153315 AGCTAGCTATATATCGTATCGTGCTA 58.847 38.462 17.69 0.00 0.00 3.49
855 1131 7.329962 AGCTAGCTATATATCGTATCGTGCTAG 59.670 40.741 17.69 13.51 45.70 3.42
856 1132 6.788684 AGCTATATATCGTATCGTGCTAGG 57.211 41.667 0.00 0.00 0.00 3.02
857 1133 5.179742 AGCTATATATCGTATCGTGCTAGGC 59.820 44.000 0.00 0.00 0.00 3.93
918 1194 4.778415 CGGGTGCTGTCGTCCTCG 62.778 72.222 0.00 0.00 38.55 4.63
1044 1330 4.405671 TCCTCGTCGTCCTCGCCT 62.406 66.667 0.00 0.00 36.96 5.52
1260 1546 2.503375 CTGTACGCCGTGTCCGTC 60.503 66.667 0.00 0.00 39.88 4.79
1407 1720 1.199615 CCAAGGAGGAGAAGGAGGAC 58.800 60.000 0.00 0.00 41.22 3.85
1410 1723 0.033894 AGGAGGAGAAGGAGGACGAC 60.034 60.000 0.00 0.00 0.00 4.34
1411 1724 1.378124 GGAGGAGAAGGAGGACGACG 61.378 65.000 0.00 0.00 0.00 5.12
1412 1725 0.392729 GAGGAGAAGGAGGACGACGA 60.393 60.000 0.00 0.00 0.00 4.20
1802 2268 0.033796 CTCCTGGCAATGGTGGATGT 60.034 55.000 0.00 0.00 0.00 3.06
1895 2367 2.974698 GCAACGTGCTGCAGACCT 60.975 61.111 20.43 0.03 42.17 3.85
1918 2390 1.165270 GTGCCGTAGCTTCCATGTTT 58.835 50.000 0.00 0.00 40.80 2.83
1984 2490 1.210478 AGTACATGGTGATGGTGCTCC 59.790 52.381 0.00 0.00 33.39 4.70
1985 2491 0.177836 TACATGGTGATGGTGCTCCG 59.822 55.000 0.00 0.00 36.30 4.63
1986 2492 1.078214 CATGGTGATGGTGCTCCGT 60.078 57.895 0.00 0.00 36.30 4.69
1987 2493 1.078214 ATGGTGATGGTGCTCCGTG 60.078 57.895 3.77 0.00 36.30 4.94
1988 2494 3.127533 GGTGATGGTGCTCCGTGC 61.128 66.667 3.77 0.00 43.25 5.34
1990 2496 2.103042 GTGATGGTGCTCCGTGCTC 61.103 63.158 3.77 0.00 43.37 4.26
1991 2497 2.285773 TGATGGTGCTCCGTGCTCT 61.286 57.895 3.77 0.00 43.37 4.09
2114 2621 2.429971 TGCAGATTCAAAGTTGGTTGCA 59.570 40.909 7.87 7.87 37.91 4.08
2131 2638 0.799534 GCACAATGAATGGTCGCAGC 60.800 55.000 0.00 0.00 0.00 5.25
2132 2639 0.522626 CACAATGAATGGTCGCAGCA 59.477 50.000 0.00 0.00 0.00 4.41
2133 2640 0.806868 ACAATGAATGGTCGCAGCAG 59.193 50.000 0.00 0.00 0.00 4.24
2134 2641 0.524816 CAATGAATGGTCGCAGCAGC 60.525 55.000 0.00 0.00 37.42 5.25
2135 2642 1.660560 AATGAATGGTCGCAGCAGCC 61.661 55.000 0.00 0.00 37.52 4.85
2136 2643 2.747460 GAATGGTCGCAGCAGCCA 60.747 61.111 7.32 7.32 37.52 4.75
2137 2644 2.749044 AATGGTCGCAGCAGCCAG 60.749 61.111 10.31 0.00 37.52 4.85
2204 2715 1.543429 CCTGCCCGATATTTCCCTCAC 60.543 57.143 0.00 0.00 0.00 3.51
2220 2731 2.030451 CCTCACCTTGCTTTCTTTGCTC 60.030 50.000 0.00 0.00 0.00 4.26
2223 2734 3.005050 TCACCTTGCTTTCTTTGCTCATG 59.995 43.478 0.00 0.00 0.00 3.07
2224 2735 2.288640 ACCTTGCTTTCTTTGCTCATGC 60.289 45.455 0.00 0.00 40.20 4.06
2254 2773 8.388103 ACAAACTGCTTATCATTGTACGTATTC 58.612 33.333 0.00 0.00 32.81 1.75
2257 2776 7.948357 ACTGCTTATCATTGTACGTATTCCTA 58.052 34.615 0.00 0.00 0.00 2.94
2296 2860 1.669779 CAGTTGCTGGCTCAGATAAGC 59.330 52.381 6.40 0.00 41.73 3.09
2589 5706 4.465512 CCACGTACGTCCCGTCCG 62.466 72.222 19.94 5.24 44.13 4.79
2619 5736 1.406069 CCTCACCGGTCCTTTCATCAG 60.406 57.143 2.59 0.00 0.00 2.90
2885 6007 3.884350 CGCTCTACTACGGCGGCA 61.884 66.667 13.24 0.00 44.32 5.69
2888 6010 2.361483 TCTACTACGGCGGCACCA 60.361 61.111 13.24 0.00 39.03 4.17
3043 6165 1.456196 CCAGCCGGCTCGAGAAGATA 61.456 60.000 30.29 0.00 0.00 1.98
3073 6195 0.547471 TCTTCTGGGGCCTCATGACA 60.547 55.000 5.29 0.00 0.00 3.58
3085 6207 2.480932 CCTCATGACACTCAGGTGATCG 60.481 54.545 3.06 0.00 45.61 3.69
3086 6208 2.424956 CTCATGACACTCAGGTGATCGA 59.575 50.000 3.06 0.00 45.61 3.59
3087 6209 3.026694 TCATGACACTCAGGTGATCGAT 58.973 45.455 0.00 0.00 45.61 3.59
3088 6210 3.067320 TCATGACACTCAGGTGATCGATC 59.933 47.826 18.72 18.72 45.61 3.69
3089 6211 1.401905 TGACACTCAGGTGATCGATCG 59.598 52.381 20.03 9.36 45.61 3.69
3090 6212 1.671328 GACACTCAGGTGATCGATCGA 59.329 52.381 21.86 21.86 45.61 3.59
3093 6215 3.131223 ACACTCAGGTGATCGATCGATTT 59.869 43.478 29.89 11.74 45.61 2.17
3094 6216 4.115516 CACTCAGGTGATCGATCGATTTT 58.884 43.478 29.89 10.93 45.61 1.82
3096 6218 5.923114 CACTCAGGTGATCGATCGATTTTAT 59.077 40.000 29.89 14.97 45.61 1.40
3098 6220 5.470368 TCAGGTGATCGATCGATTTTATCC 58.530 41.667 29.89 23.76 34.60 2.59
3101 6223 4.482386 GTGATCGATCGATTTTATCCCGA 58.518 43.478 29.89 2.12 34.60 5.14
3102 6224 4.323868 GTGATCGATCGATTTTATCCCGAC 59.676 45.833 29.89 14.29 34.60 4.79
3103 6225 3.994204 TCGATCGATTTTATCCCGACA 57.006 42.857 15.15 0.00 35.02 4.35
3104 6226 4.514781 TCGATCGATTTTATCCCGACAT 57.485 40.909 15.15 0.00 35.02 3.06
3106 6228 5.294356 TCGATCGATTTTATCCCGACATTT 58.706 37.500 15.15 0.00 35.02 2.32
3107 6229 5.756347 TCGATCGATTTTATCCCGACATTTT 59.244 36.000 15.15 0.00 35.02 1.82
3110 6232 8.227791 CGATCGATTTTATCCCGACATTTTATT 58.772 33.333 10.26 0.00 35.02 1.40
3113 6235 8.500773 TCGATTTTATCCCGACATTTTATTAGC 58.499 33.333 0.00 0.00 0.00 3.09
3125 6247 8.338259 CGACATTTTATTAGCTTAGTTGCTGAT 58.662 33.333 0.00 0.00 43.87 2.90
3126 6248 9.657121 GACATTTTATTAGCTTAGTTGCTGATC 57.343 33.333 0.00 0.00 43.87 2.92
3127 6249 8.338259 ACATTTTATTAGCTTAGTTGCTGATCG 58.662 33.333 0.00 0.00 43.87 3.69
3132 6254 2.738846 AGCTTAGTTGCTGATCGTTGTG 59.261 45.455 0.00 0.00 42.33 3.33
3137 6259 1.867233 GTTGCTGATCGTTGTGTCTGT 59.133 47.619 0.00 0.00 0.00 3.41
3138 6260 1.501169 TGCTGATCGTTGTGTCTGTG 58.499 50.000 0.00 0.00 0.00 3.66
3139 6261 0.164647 GCTGATCGTTGTGTCTGTGC 59.835 55.000 0.00 0.00 0.00 4.57
3140 6262 0.792640 CTGATCGTTGTGTCTGTGCC 59.207 55.000 0.00 0.00 0.00 5.01
3141 6263 0.392706 TGATCGTTGTGTCTGTGCCT 59.607 50.000 0.00 0.00 0.00 4.75
3142 6264 0.792640 GATCGTTGTGTCTGTGCCTG 59.207 55.000 0.00 0.00 0.00 4.85
3143 6265 0.106708 ATCGTTGTGTCTGTGCCTGT 59.893 50.000 0.00 0.00 0.00 4.00
3144 6266 0.107897 TCGTTGTGTCTGTGCCTGTT 60.108 50.000 0.00 0.00 0.00 3.16
3146 6268 1.132262 CGTTGTGTCTGTGCCTGTTTT 59.868 47.619 0.00 0.00 0.00 2.43
3147 6269 2.415357 CGTTGTGTCTGTGCCTGTTTTT 60.415 45.455 0.00 0.00 0.00 1.94
3148 6270 3.179048 GTTGTGTCTGTGCCTGTTTTTC 58.821 45.455 0.00 0.00 0.00 2.29
3149 6271 2.441410 TGTGTCTGTGCCTGTTTTTCA 58.559 42.857 0.00 0.00 0.00 2.69
3160 6292 3.057033 GCCTGTTTTTCATGATCAGCACT 60.057 43.478 0.09 0.00 0.00 4.40
3283 6415 2.844146 GTGTTCCTGAACGCGACG 59.156 61.111 15.93 3.27 43.94 5.12
3580 6712 0.473117 AGTCCCTCGTCTTCCCCAAA 60.473 55.000 0.00 0.00 0.00 3.28
3599 6731 4.501915 CCAAAGGAGAAGTGGTACGTACAA 60.502 45.833 26.02 13.80 0.00 2.41
3607 6739 7.062722 GGAGAAGTGGTACGTACAAAAATCTAC 59.937 40.741 26.02 17.70 0.00 2.59
3608 6740 7.664758 AGAAGTGGTACGTACAAAAATCTACT 58.335 34.615 26.02 8.90 0.00 2.57
3626 6759 9.972106 AAATCTACTTGATTCATCTTTCCTCTT 57.028 29.630 0.00 0.00 43.99 2.85
3629 6762 9.261035 TCTACTTGATTCATCTTTCCTCTTAGT 57.739 33.333 0.00 0.00 0.00 2.24
3639 6772 9.702253 TCATCTTTCCTCTTAGTACTACAGATT 57.298 33.333 0.91 0.00 0.00 2.40
3640 6773 9.743057 CATCTTTCCTCTTAGTACTACAGATTG 57.257 37.037 0.91 4.44 0.00 2.67
3677 6810 7.928908 GTGCAAATCACAATCTGTTTCTTTA 57.071 32.000 0.00 0.00 44.98 1.85
3680 6813 7.978414 TGCAAATCACAATCTGTTTCTTTAACA 59.022 29.630 0.00 0.00 44.31 2.41
3706 6865 1.759445 CAGATCGTGAGGGAAGGTGAT 59.241 52.381 0.00 0.00 0.00 3.06
4096 7255 1.361993 CTCGCTCTCCTTCATCCGG 59.638 63.158 0.00 0.00 0.00 5.14
4099 7258 2.825264 CTCTCCTTCATCCGGCCC 59.175 66.667 0.00 0.00 0.00 5.80
4207 7367 2.093106 GACGACCTGCTCCTCTAAGAA 58.907 52.381 0.00 0.00 0.00 2.52
4219 7379 2.768527 CCTCTAAGAATGGCAGACTCCA 59.231 50.000 0.00 0.00 40.97 3.86
4259 7419 1.334960 CGCAAAATGCAAGAACCGACT 60.335 47.619 2.99 0.00 45.36 4.18
4260 7420 2.053627 GCAAAATGCAAGAACCGACTG 58.946 47.619 0.00 0.00 44.26 3.51
4397 7557 2.743126 TCGGAAAACGCACGGAAATAAT 59.257 40.909 0.00 0.00 43.86 1.28
4398 7558 3.931468 TCGGAAAACGCACGGAAATAATA 59.069 39.130 0.00 0.00 43.86 0.98
4399 7559 4.391216 TCGGAAAACGCACGGAAATAATAA 59.609 37.500 0.00 0.00 43.86 1.40
4468 7628 5.867903 TTTTTCTTTTTCCAGGCTGATGA 57.132 34.783 17.94 2.17 0.00 2.92
4469 7629 5.458041 TTTTCTTTTTCCAGGCTGATGAG 57.542 39.130 17.94 6.54 0.00 2.90
4470 7630 4.371624 TTCTTTTTCCAGGCTGATGAGA 57.628 40.909 17.94 8.78 0.00 3.27
4472 7632 4.927049 TCTTTTTCCAGGCTGATGAGATT 58.073 39.130 17.94 0.00 0.00 2.40
4485 9736 6.654161 GGCTGATGAGATTGCTTATATTCAGT 59.346 38.462 0.00 0.00 0.00 3.41
4497 9748 8.407457 TGCTTATATTCAGTAAAGAGTCAACG 57.593 34.615 0.00 0.00 0.00 4.10
4498 9749 7.010183 TGCTTATATTCAGTAAAGAGTCAACGC 59.990 37.037 0.00 0.00 0.00 4.84
4499 9750 5.950965 ATATTCAGTAAAGAGTCAACGCG 57.049 39.130 3.53 3.53 0.00 6.01
4500 9751 2.787601 TCAGTAAAGAGTCAACGCGT 57.212 45.000 5.58 5.58 0.00 6.01
4501 9752 3.088194 TCAGTAAAGAGTCAACGCGTT 57.912 42.857 20.79 20.79 0.00 4.84
4502 9753 4.227512 TCAGTAAAGAGTCAACGCGTTA 57.772 40.909 26.11 10.52 0.00 3.18
4503 9754 4.224433 TCAGTAAAGAGTCAACGCGTTAG 58.776 43.478 26.11 18.40 0.00 2.34
4504 9755 2.985139 AGTAAAGAGTCAACGCGTTAGC 59.015 45.455 26.11 19.34 40.74 3.09
4505 9756 1.145803 AAAGAGTCAACGCGTTAGCC 58.854 50.000 26.11 14.84 41.18 3.93
4506 9757 0.317479 AAGAGTCAACGCGTTAGCCT 59.683 50.000 26.11 19.36 41.18 4.58
4507 9758 0.109226 AGAGTCAACGCGTTAGCCTC 60.109 55.000 26.11 25.56 41.18 4.70
4508 9759 1.077089 GAGTCAACGCGTTAGCCTCC 61.077 60.000 26.11 8.24 41.18 4.30
4509 9760 1.373748 GTCAACGCGTTAGCCTCCA 60.374 57.895 26.11 0.00 41.18 3.86
4510 9761 0.739813 GTCAACGCGTTAGCCTCCAT 60.740 55.000 26.11 0.00 41.18 3.41
4511 9762 0.036765 TCAACGCGTTAGCCTCCATT 60.037 50.000 26.11 0.00 41.18 3.16
4512 9763 0.802494 CAACGCGTTAGCCTCCATTT 59.198 50.000 26.11 0.00 41.18 2.32
4513 9764 1.199097 CAACGCGTTAGCCTCCATTTT 59.801 47.619 26.11 0.00 41.18 1.82
4514 9765 1.530323 ACGCGTTAGCCTCCATTTTT 58.470 45.000 5.58 0.00 41.18 1.94
4551 9802 9.490663 AAAGCATCGAATTCTTCTTAATTTACG 57.509 29.630 3.52 0.00 0.00 3.18
4552 9803 7.630924 AGCATCGAATTCTTCTTAATTTACGG 58.369 34.615 3.52 0.00 0.00 4.02
4553 9804 6.851330 GCATCGAATTCTTCTTAATTTACGGG 59.149 38.462 3.52 0.00 0.00 5.28
4554 9805 6.913873 TCGAATTCTTCTTAATTTACGGGG 57.086 37.500 3.52 0.00 0.00 5.73
4555 9806 6.408869 TCGAATTCTTCTTAATTTACGGGGT 58.591 36.000 3.52 0.00 0.00 4.95
4556 9807 6.314400 TCGAATTCTTCTTAATTTACGGGGTG 59.686 38.462 3.52 0.00 0.00 4.61
4559 9810 2.423446 TCTTAATTTACGGGGTGCCC 57.577 50.000 0.00 0.00 41.09 5.36
4603 9854 4.392166 GGTTTCCCCGGCCCCAAT 62.392 66.667 0.00 0.00 0.00 3.16
4604 9855 2.284331 GTTTCCCCGGCCCCAATT 60.284 61.111 0.00 0.00 0.00 2.32
4605 9856 1.916273 GTTTCCCCGGCCCCAATTT 60.916 57.895 0.00 0.00 0.00 1.82
4609 9865 0.340208 TCCCCGGCCCCAATTTTTAT 59.660 50.000 0.00 0.00 0.00 1.40
4610 9866 0.756294 CCCCGGCCCCAATTTTTATC 59.244 55.000 0.00 0.00 0.00 1.75
4623 9879 6.369615 CCCAATTTTTATCAAGAGGCAAACAG 59.630 38.462 0.00 0.00 0.00 3.16
4637 9893 2.721090 GCAAACAGCGAGACAAAACATC 59.279 45.455 0.00 0.00 0.00 3.06
4651 9912 6.414109 AGACAAAACATCGTTATACTCGATCG 59.586 38.462 9.36 9.36 44.49 3.69
4654 9915 3.811514 ACATCGTTATACTCGATCGCAG 58.188 45.455 11.09 11.31 44.49 5.18
4660 9921 1.858091 ATACTCGATCGCAGCCAAAG 58.142 50.000 11.09 3.00 0.00 2.77
4663 9924 1.137086 ACTCGATCGCAGCCAAAGTAT 59.863 47.619 11.09 0.00 0.00 2.12
4664 9925 1.524355 CTCGATCGCAGCCAAAGTATG 59.476 52.381 11.09 0.00 0.00 2.39
4670 9931 1.135315 CGCAGCCAAAGTATGTGCAAT 60.135 47.619 0.00 0.00 32.13 3.56
4688 9949 9.669887 ATGTGCAATGAAAATTATTACAACCAT 57.330 25.926 0.00 0.00 0.00 3.55
4738 9999 6.690194 AAAAAGATGGACTATGATCAGCAC 57.310 37.500 0.09 0.00 0.00 4.40
4739 10000 5.363562 AAAGATGGACTATGATCAGCACA 57.636 39.130 0.09 0.00 0.00 4.57
4740 10001 5.563876 AAGATGGACTATGATCAGCACAT 57.436 39.130 0.09 1.38 0.00 3.21
4742 10003 4.347292 AGATGGACTATGATCAGCACATGT 59.653 41.667 0.09 0.00 0.00 3.21
4743 10004 3.800531 TGGACTATGATCAGCACATGTG 58.199 45.455 21.83 21.83 0.00 3.21
4745 10006 4.080975 TGGACTATGATCAGCACATGTGAA 60.081 41.667 29.80 13.72 0.00 3.18
4748 10009 5.926663 ACTATGATCAGCACATGTGAAGAT 58.073 37.500 29.80 26.73 0.00 2.40
4749 10010 7.059202 ACTATGATCAGCACATGTGAAGATA 57.941 36.000 29.80 16.99 0.00 1.98
4751 10012 7.989170 ACTATGATCAGCACATGTGAAGATAAA 59.011 33.333 29.80 19.48 0.00 1.40
4752 10013 6.426980 TGATCAGCACATGTGAAGATAAAC 57.573 37.500 29.80 17.06 0.00 2.01
4753 10014 5.939296 TGATCAGCACATGTGAAGATAAACA 59.061 36.000 29.80 19.03 0.00 2.83
4754 10015 5.868043 TCAGCACATGTGAAGATAAACAG 57.132 39.130 29.80 6.00 0.00 3.16
4755 10016 5.550290 TCAGCACATGTGAAGATAAACAGA 58.450 37.500 29.80 8.27 0.00 3.41
4756 10017 6.175471 TCAGCACATGTGAAGATAAACAGAT 58.825 36.000 29.80 0.00 0.00 2.90
4757 10018 6.093082 TCAGCACATGTGAAGATAAACAGATG 59.907 38.462 29.80 6.67 41.42 2.90
4758 10019 5.356190 AGCACATGTGAAGATAAACAGATGG 59.644 40.000 29.80 0.00 40.47 3.51
4759 10020 5.355071 GCACATGTGAAGATAAACAGATGGA 59.645 40.000 29.80 0.00 40.47 3.41
4760 10021 6.457934 GCACATGTGAAGATAAACAGATGGAG 60.458 42.308 29.80 0.00 40.47 3.86
4761 10022 6.820152 CACATGTGAAGATAAACAGATGGAGA 59.180 38.462 21.64 0.00 40.47 3.71
4763 10024 7.335422 ACATGTGAAGATAAACAGATGGAGAAC 59.665 37.037 0.00 0.00 40.47 3.01
4764 10025 6.768483 TGTGAAGATAAACAGATGGAGAACA 58.232 36.000 0.00 0.00 0.00 3.18
4765 10026 6.875726 TGTGAAGATAAACAGATGGAGAACAG 59.124 38.462 0.00 0.00 0.00 3.16
4766 10027 7.099764 GTGAAGATAAACAGATGGAGAACAGA 58.900 38.462 0.00 0.00 0.00 3.41
4767 10028 7.604164 GTGAAGATAAACAGATGGAGAACAGAA 59.396 37.037 0.00 0.00 0.00 3.02
4771 10032 7.986320 AGATAAACAGATGGAGAACAGAATCAG 59.014 37.037 0.00 0.00 0.00 2.90
4773 10034 3.518705 ACAGATGGAGAACAGAATCAGCT 59.481 43.478 0.00 0.00 0.00 4.24
4774 10035 4.713814 ACAGATGGAGAACAGAATCAGCTA 59.286 41.667 0.00 0.00 0.00 3.32
4775 10036 5.163426 ACAGATGGAGAACAGAATCAGCTAG 60.163 44.000 0.00 0.00 0.00 3.42
4776 10037 3.533606 TGGAGAACAGAATCAGCTAGC 57.466 47.619 6.62 6.62 0.00 3.42
4777 10038 3.102972 TGGAGAACAGAATCAGCTAGCT 58.897 45.455 12.68 12.68 0.00 3.32
4779 10040 4.340666 TGGAGAACAGAATCAGCTAGCTAG 59.659 45.833 18.86 16.84 0.00 3.42
4798 10059 1.586422 GCACAGAGCTTCACAACTGA 58.414 50.000 4.97 0.00 41.15 3.41
4799 10060 1.942657 GCACAGAGCTTCACAACTGAA 59.057 47.619 4.97 0.00 41.15 3.02
4800 10061 2.355756 GCACAGAGCTTCACAACTGAAA 59.644 45.455 4.97 0.00 41.15 2.69
4801 10062 3.181497 GCACAGAGCTTCACAACTGAAAA 60.181 43.478 4.97 0.00 41.15 2.29
4803 10064 4.009675 ACAGAGCTTCACAACTGAAAACA 58.990 39.130 4.97 0.00 35.92 2.83
4804 10065 4.458989 ACAGAGCTTCACAACTGAAAACAA 59.541 37.500 4.97 0.00 35.92 2.83
4806 10067 4.702131 AGAGCTTCACAACTGAAAACAACT 59.298 37.500 0.00 0.00 35.92 3.16
4807 10068 5.183904 AGAGCTTCACAACTGAAAACAACTT 59.816 36.000 0.00 0.00 35.92 2.66
4808 10069 5.163513 AGCTTCACAACTGAAAACAACTTG 58.836 37.500 0.00 0.00 35.92 3.16
4810 10071 6.072175 AGCTTCACAACTGAAAACAACTTGTA 60.072 34.615 0.00 0.00 35.92 2.41
4811 10072 6.251376 GCTTCACAACTGAAAACAACTTGTAG 59.749 38.462 0.00 0.00 35.92 2.74
4812 10073 7.441890 TTCACAACTGAAAACAACTTGTAGA 57.558 32.000 0.00 0.00 33.20 2.59
4813 10074 7.624360 TCACAACTGAAAACAACTTGTAGAT 57.376 32.000 0.00 0.00 0.00 1.98
4814 10075 7.693952 TCACAACTGAAAACAACTTGTAGATC 58.306 34.615 0.00 0.00 0.00 2.75
4815 10076 7.335673 TCACAACTGAAAACAACTTGTAGATCA 59.664 33.333 0.00 0.35 0.00 2.92
4818 10079 5.531287 ACTGAAAACAACTTGTAGATCACCC 59.469 40.000 0.00 0.00 0.00 4.61
4820 10081 2.762535 ACAACTTGTAGATCACCCCG 57.237 50.000 0.00 0.00 0.00 5.73
4821 10082 1.975680 ACAACTTGTAGATCACCCCGT 59.024 47.619 0.00 0.00 0.00 5.28
4822 10083 3.167485 ACAACTTGTAGATCACCCCGTA 58.833 45.455 0.00 0.00 0.00 4.02
4824 10085 2.811410 ACTTGTAGATCACCCCGTACA 58.189 47.619 0.00 0.00 0.00 2.90
4826 10087 3.782046 CTTGTAGATCACCCCGTACAAG 58.218 50.000 12.97 12.97 43.43 3.16
4827 10088 2.104967 TGTAGATCACCCCGTACAAGG 58.895 52.381 0.00 0.00 0.00 3.61
4828 10089 2.105766 GTAGATCACCCCGTACAAGGT 58.894 52.381 0.00 0.00 36.58 3.50
4829 10090 1.652947 AGATCACCCCGTACAAGGTT 58.347 50.000 1.03 0.00 32.72 3.50
4830 10091 1.553704 AGATCACCCCGTACAAGGTTC 59.446 52.381 1.03 0.00 32.72 3.62
4831 10092 1.276989 GATCACCCCGTACAAGGTTCA 59.723 52.381 1.03 0.00 32.72 3.18
4833 10094 0.604511 CACCCCGTACAAGGTTCACC 60.605 60.000 1.03 0.00 32.72 4.02
4844 10105 2.206576 AGGTTCACCTCCAAGCAATC 57.793 50.000 0.00 0.00 44.77 2.67
4845 10106 1.177401 GGTTCACCTCCAAGCAATCC 58.823 55.000 0.00 0.00 0.00 3.01
4846 10107 1.272147 GGTTCACCTCCAAGCAATCCT 60.272 52.381 0.00 0.00 0.00 3.24
4847 10108 2.026262 GGTTCACCTCCAAGCAATCCTA 60.026 50.000 0.00 0.00 0.00 2.94
4848 10109 3.561313 GGTTCACCTCCAAGCAATCCTAA 60.561 47.826 0.00 0.00 0.00 2.69
4849 10110 3.634397 TCACCTCCAAGCAATCCTAAG 57.366 47.619 0.00 0.00 0.00 2.18
4850 10111 2.239654 TCACCTCCAAGCAATCCTAAGG 59.760 50.000 0.00 0.00 0.00 2.69
4851 10112 2.239654 CACCTCCAAGCAATCCTAAGGA 59.760 50.000 0.00 0.00 35.55 3.36
4856 10117 2.172293 CCAAGCAATCCTAAGGAGCTCT 59.828 50.000 14.64 0.00 33.06 4.09
4867 10128 3.657956 GGAGCTCTCCTTGACGATG 57.342 57.895 14.64 0.00 46.16 3.84
4868 10129 1.107114 GGAGCTCTCCTTGACGATGA 58.893 55.000 14.64 0.00 46.16 2.92
4869 10130 1.686052 GGAGCTCTCCTTGACGATGAT 59.314 52.381 14.64 0.00 46.16 2.45
4871 10132 1.336440 AGCTCTCCTTGACGATGATCG 59.664 52.381 14.01 14.01 46.93 3.69
4872 10133 1.335182 GCTCTCCTTGACGATGATCGA 59.665 52.381 22.88 0.00 43.74 3.59
4877 10138 1.764851 CTTGACGATGATCGAGGAGC 58.235 55.000 22.88 5.76 43.74 4.70
4880 10141 2.256764 CGATGATCGAGGAGCCCG 59.743 66.667 9.62 0.00 43.74 6.13
4888 10988 1.144057 CGAGGAGCCCGTAAGCATT 59.856 57.895 0.00 0.00 34.23 3.56
4897 10997 1.062587 CCCGTAAGCATTTGAGAAGCG 59.937 52.381 0.00 0.00 0.00 4.68
4920 11020 4.496670 GCTTGAGCGTCGGTGTAT 57.503 55.556 0.00 0.00 0.00 2.29
4926 11026 1.942657 TGAGCGTCGGTGTATAGTACC 59.057 52.381 0.00 0.00 34.81 3.34
4937 11037 5.357878 CGGTGTATAGTACCTTCCACTTGTA 59.642 44.000 4.96 0.00 36.03 2.41
4959 11059 0.403271 ACAAAGGAGCTCACCATGCT 59.597 50.000 17.19 0.00 44.24 3.79
4963 11063 0.835941 AGGAGCTCACCATGCTTAGG 59.164 55.000 17.19 0.00 41.30 2.69
4965 11065 1.474143 GGAGCTCACCATGCTTAGGAC 60.474 57.143 17.19 0.00 41.30 3.85
4974 11074 2.032550 CCATGCTTAGGACGCATTTCAG 59.967 50.000 0.00 0.00 45.18 3.02
4981 11081 2.966050 AGGACGCATTTCAGACTTCTC 58.034 47.619 0.00 0.00 0.00 2.87
4989 11089 3.845781 TTTCAGACTTCTCCAAGTGCT 57.154 42.857 0.00 0.00 43.37 4.40
4995 11095 1.625818 ACTTCTCCAAGTGCTACCCTG 59.374 52.381 0.00 0.00 41.64 4.45
4997 11097 2.024176 TCTCCAAGTGCTACCCTGAA 57.976 50.000 0.00 0.00 0.00 3.02
5012 11112 6.366061 GCTACCCTGAAACACAAATTCATTTC 59.634 38.462 0.00 0.00 36.30 2.17
5020 11120 5.888412 ACACAAATTCATTTCGAAGCAAC 57.112 34.783 0.00 0.00 36.95 4.17
5021 11121 4.744631 ACACAAATTCATTTCGAAGCAACC 59.255 37.500 0.00 0.00 36.95 3.77
5053 11153 5.357878 CCACAAAGGTAGCATGTACAATCAT 59.642 40.000 0.00 0.00 0.00 2.45
5057 11157 7.495934 ACAAAGGTAGCATGTACAATCATACTC 59.504 37.037 0.00 0.00 0.00 2.59
5064 11164 6.872547 AGCATGTACAATCATACTCATAGCAG 59.127 38.462 0.00 0.00 0.00 4.24
5065 11165 6.648310 GCATGTACAATCATACTCATAGCAGT 59.352 38.462 0.00 0.00 0.00 4.40
5070 11170 9.751542 GTACAATCATACTCATAGCAGTAACTT 57.248 33.333 0.00 0.00 32.52 2.66
5112 11212 6.899089 TGGATAGCTAAATCACCAAATGAGA 58.101 36.000 0.00 0.00 41.91 3.27
5120 11220 6.983906 AAATCACCAAATGAGAAAGGAAGT 57.016 33.333 0.00 0.00 41.91 3.01
5134 11234 5.194537 AGAAAGGAAGTGGGATATCAACCAT 59.805 40.000 4.83 0.00 39.30 3.55
5140 11240 4.210331 AGTGGGATATCAACCATTTCAGC 58.790 43.478 4.83 0.00 39.30 4.26
5151 11251 8.851541 ATCAACCATTTCAGCAATTATTTGTT 57.148 26.923 0.00 0.00 35.17 2.83
5172 11272 3.412237 AAGTATTAACGGCCACAGTGT 57.588 42.857 2.24 0.00 0.00 3.55
5192 11292 9.778741 ACAGTGTAATCAGAGAAAAGATGTTTA 57.221 29.630 0.00 0.00 0.00 2.01
5202 11302 8.624776 CAGAGAAAAGATGTTTAACACTTTCCT 58.375 33.333 18.39 14.36 32.44 3.36
5204 11304 9.803315 GAGAAAAGATGTTTAACACTTTCCTTT 57.197 29.630 18.39 8.80 32.44 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.146066 TCCAAAATTGTTCAGGAGACGG 58.854 45.455 0.00 0.00 0.00 4.79
134 135 5.880332 GGAATGAAGGAAGTACAATACTGCA 59.120 40.000 0.00 0.00 39.39 4.41
175 176 9.698309 CCGTATGTAGTCAATATTCAAATCTCT 57.302 33.333 0.00 0.00 0.00 3.10
176 177 9.692749 TCCGTATGTAGTCAATATTCAAATCTC 57.307 33.333 0.00 0.00 0.00 2.75
177 178 9.698309 CTCCGTATGTAGTCAATATTCAAATCT 57.302 33.333 0.00 0.00 0.00 2.40
178 179 9.477484 ACTCCGTATGTAGTCAATATTCAAATC 57.523 33.333 0.00 0.00 0.00 2.17
698 952 4.340246 GGAAACGGCGGGGGAACT 62.340 66.667 13.24 0.00 0.00 3.01
703 958 3.131478 GATGTGGAAACGGCGGGG 61.131 66.667 13.24 0.00 0.00 5.73
713 968 2.223409 GCATGTACGTAGACGATGTGGA 60.223 50.000 9.41 0.00 43.02 4.02
719 974 0.374758 GTCGGCATGTACGTAGACGA 59.625 55.000 9.41 7.12 43.02 4.20
721 976 1.198608 GCGTCGGCATGTACGTAGAC 61.199 60.000 15.41 0.00 41.10 2.59
722 977 1.063006 GCGTCGGCATGTACGTAGA 59.937 57.895 15.41 0.00 41.10 2.59
724 979 2.876219 TGCGTCGGCATGTACGTA 59.124 55.556 15.41 10.34 46.21 3.57
741 996 3.249999 CGCGACCGGTGTGATTTT 58.750 55.556 14.63 0.00 0.00 1.82
820 1096 1.847328 TATAGCTAGCTATGGCGCCA 58.153 50.000 36.77 34.80 44.37 5.69
832 1108 6.368243 GCCTAGCACGATACGATATATAGCTA 59.632 42.308 0.00 0.00 0.00 3.32
833 1109 5.179742 GCCTAGCACGATACGATATATAGCT 59.820 44.000 0.00 0.00 0.00 3.32
834 1110 5.179742 AGCCTAGCACGATACGATATATAGC 59.820 44.000 0.00 0.00 0.00 2.97
835 1111 6.594886 CAGCCTAGCACGATACGATATATAG 58.405 44.000 0.00 0.00 0.00 1.31
837 1113 4.261238 GCAGCCTAGCACGATACGATATAT 60.261 45.833 0.00 0.00 0.00 0.86
838 1114 3.064958 GCAGCCTAGCACGATACGATATA 59.935 47.826 0.00 0.00 0.00 0.86
839 1115 2.159366 GCAGCCTAGCACGATACGATAT 60.159 50.000 0.00 0.00 0.00 1.63
841 1117 0.039074 GCAGCCTAGCACGATACGAT 60.039 55.000 0.00 0.00 0.00 3.73
842 1118 1.101635 AGCAGCCTAGCACGATACGA 61.102 55.000 0.00 0.00 36.85 3.43
843 1119 0.591659 TAGCAGCCTAGCACGATACG 59.408 55.000 0.00 0.00 36.85 3.06
844 1120 2.339728 CTAGCAGCCTAGCACGATAC 57.660 55.000 0.00 0.00 35.06 2.24
852 1128 6.657541 GGATATATACCTAGCTAGCAGCCTAG 59.342 46.154 18.83 9.52 43.77 3.02
853 1129 6.544650 GGATATATACCTAGCTAGCAGCCTA 58.455 44.000 18.83 4.42 43.77 3.93
854 1130 5.390387 GGATATATACCTAGCTAGCAGCCT 58.610 45.833 18.83 0.00 43.77 4.58
855 1131 4.216687 CGGATATATACCTAGCTAGCAGCC 59.783 50.000 18.83 3.70 43.77 4.85
856 1132 4.822896 ACGGATATATACCTAGCTAGCAGC 59.177 45.833 18.83 0.00 42.84 5.25
857 1133 5.470777 GGACGGATATATACCTAGCTAGCAG 59.529 48.000 18.83 11.93 0.00 4.24
868 1144 3.928992 TGACGAGACGGACGGATATATAC 59.071 47.826 0.00 0.00 34.93 1.47
918 1194 0.676184 TATGGAGCTGATCGAGTGGC 59.324 55.000 0.00 0.00 0.00 5.01
940 1216 1.078214 GGCAGTGGCACAGCTGATA 60.078 57.895 29.93 0.00 41.80 2.15
1033 1319 1.304217 AGGAAGAAGGCGAGGACGA 60.304 57.895 0.00 0.00 42.66 4.20
1078 1364 4.256180 GTCCCCCGGCCTATGCAG 62.256 72.222 0.00 0.00 40.13 4.41
1388 1696 1.199615 GTCCTCCTTCTCCTCCTTGG 58.800 60.000 0.00 0.00 37.10 3.61
1390 1698 0.705253 TCGTCCTCCTTCTCCTCCTT 59.295 55.000 0.00 0.00 0.00 3.36
1407 1720 4.419957 TCGTCAGCGTCGTCGTCG 62.420 66.667 7.53 7.53 39.49 5.12
1410 1723 3.703939 CTCCTCGTCAGCGTCGTCG 62.704 68.421 0.00 0.00 39.49 5.12
1411 1724 2.098680 CTCCTCGTCAGCGTCGTC 59.901 66.667 0.00 0.00 39.49 4.20
1412 1725 3.432588 CCTCCTCGTCAGCGTCGT 61.433 66.667 0.00 0.00 39.49 4.34
1533 1858 1.364626 GAGCTGACAGAACGCATGGG 61.365 60.000 6.65 8.44 0.00 4.00
1895 2367 2.047274 GGAAGCTACGGCACTGCA 60.047 61.111 2.82 0.00 41.70 4.41
1984 2490 1.635844 TGGCATTACGTTAGAGCACG 58.364 50.000 0.00 0.00 46.04 5.34
1985 2491 2.351726 CCTTGGCATTACGTTAGAGCAC 59.648 50.000 0.00 0.00 0.00 4.40
1986 2492 2.627945 CCTTGGCATTACGTTAGAGCA 58.372 47.619 0.00 0.00 0.00 4.26
1987 2493 1.330829 GCCTTGGCATTACGTTAGAGC 59.669 52.381 6.79 0.00 0.00 4.09
1988 2494 2.627945 TGCCTTGGCATTACGTTAGAG 58.372 47.619 10.65 0.00 0.00 2.43
1990 2496 2.942376 TCATGCCTTGGCATTACGTTAG 59.058 45.455 22.97 11.14 0.00 2.34
1991 2497 2.992593 TCATGCCTTGGCATTACGTTA 58.007 42.857 22.97 3.96 0.00 3.18
2114 2621 0.806868 CTGCTGCGACCATTCATTGT 59.193 50.000 0.00 0.00 0.00 2.71
2131 2638 2.115910 TGGGACCTTTGCTGGCTG 59.884 61.111 0.00 0.00 0.00 4.85
2132 2639 2.116125 GTGGGACCTTTGCTGGCT 59.884 61.111 0.00 0.00 0.00 4.75
2133 2640 2.991540 GGTGGGACCTTTGCTGGC 60.992 66.667 0.00 0.00 34.73 4.85
2134 2641 2.484287 ATCGGTGGGACCTTTGCTGG 62.484 60.000 0.00 0.00 35.66 4.85
2135 2642 0.251916 TATCGGTGGGACCTTTGCTG 59.748 55.000 0.00 0.00 35.66 4.41
2136 2643 0.252197 GTATCGGTGGGACCTTTGCT 59.748 55.000 0.00 0.00 35.66 3.91
2137 2644 1.087771 CGTATCGGTGGGACCTTTGC 61.088 60.000 0.00 0.00 35.66 3.68
2194 2701 3.532641 AGAAAGCAAGGTGAGGGAAAT 57.467 42.857 0.00 0.00 0.00 2.17
2204 2715 2.334838 GCATGAGCAAAGAAAGCAAGG 58.665 47.619 0.00 0.00 41.58 3.61
2220 2731 4.548494 TGATAAGCAGTTTGTTGTGCATG 58.452 39.130 0.00 0.00 42.47 4.06
2223 2734 4.984161 ACAATGATAAGCAGTTTGTTGTGC 59.016 37.500 0.00 0.00 40.17 4.57
2224 2735 6.303022 CGTACAATGATAAGCAGTTTGTTGTG 59.697 38.462 0.00 0.00 33.19 3.33
2225 2736 6.017440 ACGTACAATGATAAGCAGTTTGTTGT 60.017 34.615 0.00 0.00 33.19 3.32
2226 2737 6.370593 ACGTACAATGATAAGCAGTTTGTTG 58.629 36.000 0.00 0.00 33.19 3.33
2227 2738 6.554334 ACGTACAATGATAAGCAGTTTGTT 57.446 33.333 0.00 0.00 33.19 2.83
2270 2790 3.264866 GAGCCAGCAACTGCACTGC 62.265 63.158 7.78 7.78 45.16 4.40
2296 2860 6.529463 TGCATCACGTATTCATTCACATAG 57.471 37.500 0.00 0.00 0.00 2.23
3043 6165 3.331252 CCAGAAGATGGGGAGGAGT 57.669 57.895 0.00 0.00 46.36 3.85
3073 6195 4.392921 AAAATCGATCGATCACCTGAGT 57.607 40.909 29.48 9.84 33.08 3.41
3087 6209 8.500773 GCTAATAAAATGTCGGGATAAAATCGA 58.499 33.333 0.00 0.00 0.00 3.59
3088 6210 8.504005 AGCTAATAAAATGTCGGGATAAAATCG 58.496 33.333 0.00 0.00 0.00 3.34
3093 6215 9.841295 AACTAAGCTAATAAAATGTCGGGATAA 57.159 29.630 0.00 0.00 0.00 1.75
3094 6216 9.268268 CAACTAAGCTAATAAAATGTCGGGATA 57.732 33.333 0.00 0.00 0.00 2.59
3096 6218 6.037830 GCAACTAAGCTAATAAAATGTCGGGA 59.962 38.462 0.00 0.00 0.00 5.14
3098 6220 6.907212 CAGCAACTAAGCTAATAAAATGTCGG 59.093 38.462 0.00 0.00 44.54 4.79
3101 6223 8.338259 CGATCAGCAACTAAGCTAATAAAATGT 58.662 33.333 0.00 0.00 44.54 2.71
3102 6224 8.338259 ACGATCAGCAACTAAGCTAATAAAATG 58.662 33.333 0.00 0.00 44.54 2.32
3103 6225 8.438676 ACGATCAGCAACTAAGCTAATAAAAT 57.561 30.769 0.00 0.00 44.54 1.82
3104 6226 7.843490 ACGATCAGCAACTAAGCTAATAAAA 57.157 32.000 0.00 0.00 44.54 1.52
3106 6228 6.816640 ACAACGATCAGCAACTAAGCTAATAA 59.183 34.615 0.00 0.00 44.54 1.40
3107 6229 6.255670 CACAACGATCAGCAACTAAGCTAATA 59.744 38.462 0.00 0.00 44.54 0.98
3110 6232 3.926527 CACAACGATCAGCAACTAAGCTA 59.073 43.478 0.00 0.00 44.54 3.32
3112 6234 2.480419 ACACAACGATCAGCAACTAAGC 59.520 45.455 0.00 0.00 0.00 3.09
3113 6235 3.990469 AGACACAACGATCAGCAACTAAG 59.010 43.478 0.00 0.00 0.00 2.18
3125 6247 0.107897 AACAGGCACAGACACAACGA 60.108 50.000 0.00 0.00 0.00 3.85
3126 6248 0.732571 AAACAGGCACAGACACAACG 59.267 50.000 0.00 0.00 0.00 4.10
3127 6249 2.939460 AAAACAGGCACAGACACAAC 57.061 45.000 0.00 0.00 0.00 3.32
3132 6254 3.988379 TCATGAAAAACAGGCACAGAC 57.012 42.857 0.00 0.00 0.00 3.51
3137 6259 2.892215 TGCTGATCATGAAAAACAGGCA 59.108 40.909 17.58 14.24 0.00 4.75
3138 6260 3.057033 AGTGCTGATCATGAAAAACAGGC 60.057 43.478 17.58 12.72 0.00 4.85
3139 6261 4.778534 AGTGCTGATCATGAAAAACAGG 57.221 40.909 17.58 0.00 0.00 4.00
3140 6262 6.073980 CCAAAAGTGCTGATCATGAAAAACAG 60.074 38.462 0.00 8.62 0.00 3.16
3141 6263 5.754406 CCAAAAGTGCTGATCATGAAAAACA 59.246 36.000 0.00 0.00 0.00 2.83
3142 6264 5.178067 CCCAAAAGTGCTGATCATGAAAAAC 59.822 40.000 0.00 0.00 0.00 2.43
3143 6265 5.070180 TCCCAAAAGTGCTGATCATGAAAAA 59.930 36.000 0.00 0.00 0.00 1.94
3144 6266 4.588106 TCCCAAAAGTGCTGATCATGAAAA 59.412 37.500 0.00 0.00 0.00 2.29
3146 6268 3.765381 TCCCAAAAGTGCTGATCATGAA 58.235 40.909 0.00 0.00 0.00 2.57
3147 6269 3.438216 TCCCAAAAGTGCTGATCATGA 57.562 42.857 0.00 0.00 0.00 3.07
3148 6270 4.401519 AGATTCCCAAAAGTGCTGATCATG 59.598 41.667 0.00 0.00 0.00 3.07
3149 6271 4.401519 CAGATTCCCAAAAGTGCTGATCAT 59.598 41.667 0.00 0.00 0.00 2.45
3160 6292 0.251121 TGCTCGCCAGATTCCCAAAA 60.251 50.000 0.00 0.00 0.00 2.44
3283 6415 2.383527 CGCCTGCTTCTTGGACGTC 61.384 63.158 7.13 7.13 0.00 4.34
3580 6712 4.942761 TTTTGTACGTACCACTTCTCCT 57.057 40.909 22.43 0.00 0.00 3.69
3599 6731 9.972106 AGAGGAAAGATGAATCAAGTAGATTTT 57.028 29.630 0.00 0.00 46.76 1.82
3639 6772 6.389091 GTGATTTGCACCATTGATTTCTACA 58.611 36.000 0.00 0.00 41.78 2.74
3640 6773 6.875926 GTGATTTGCACCATTGATTTCTAC 57.124 37.500 0.00 0.00 41.78 2.59
3654 6787 7.978414 TGTTAAAGAAACAGATTGTGATTTGCA 59.022 29.630 0.00 0.00 43.22 4.08
3677 6810 3.960755 TCCCTCACGATCTGTCATATGTT 59.039 43.478 1.90 0.00 0.00 2.71
3680 6813 3.576118 CCTTCCCTCACGATCTGTCATAT 59.424 47.826 0.00 0.00 0.00 1.78
3802 6961 1.446272 CTCGTCCCCGCTGAAGTTC 60.446 63.158 0.00 0.00 0.00 3.01
4219 7379 1.016130 CGACGCTCTGACAAGGCAAT 61.016 55.000 0.00 0.00 0.00 3.56
4242 7402 4.111916 CAAACAGTCGGTTCTTGCATTTT 58.888 39.130 0.00 0.00 39.29 1.82
4397 7557 6.070481 GGGGGTTGCATTTATTTTCTTCCTTA 60.070 38.462 0.00 0.00 0.00 2.69
4398 7558 5.280470 GGGGGTTGCATTTATTTTCTTCCTT 60.280 40.000 0.00 0.00 0.00 3.36
4399 7559 4.225042 GGGGGTTGCATTTATTTTCTTCCT 59.775 41.667 0.00 0.00 0.00 3.36
4452 7612 3.194116 GCAATCTCATCAGCCTGGAAAAA 59.806 43.478 0.00 0.00 0.00 1.94
4457 7617 2.054232 AAGCAATCTCATCAGCCTGG 57.946 50.000 0.00 0.00 0.00 4.45
4472 7632 7.010183 GCGTTGACTCTTTACTGAATATAAGCA 59.990 37.037 0.00 0.00 0.00 3.91
4485 9736 2.029649 AGGCTAACGCGTTGACTCTTTA 60.030 45.455 33.40 10.68 36.88 1.85
4494 9745 1.530323 AAAATGGAGGCTAACGCGTT 58.470 45.000 29.27 29.27 36.88 4.84
4495 9746 1.530323 AAAAATGGAGGCTAACGCGT 58.470 45.000 5.58 5.58 36.88 6.01
4534 9785 5.126545 GGCACCCCGTAAATTAAGAAGAATT 59.873 40.000 0.00 0.00 0.00 2.17
4535 9786 4.643334 GGCACCCCGTAAATTAAGAAGAAT 59.357 41.667 0.00 0.00 0.00 2.40
4536 9787 4.011698 GGCACCCCGTAAATTAAGAAGAA 58.988 43.478 0.00 0.00 0.00 2.52
4537 9788 3.613030 GGCACCCCGTAAATTAAGAAGA 58.387 45.455 0.00 0.00 0.00 2.87
4569 9820 6.618287 GGAAACCCATTTCTTTCCAAAAAG 57.382 37.500 4.60 0.00 43.46 2.27
4594 9845 3.181476 CCTCTTGATAAAAATTGGGGCCG 60.181 47.826 0.00 0.00 0.00 6.13
4596 9847 3.197549 TGCCTCTTGATAAAAATTGGGGC 59.802 43.478 0.00 0.00 36.75 5.80
4597 9848 5.419239 TTGCCTCTTGATAAAAATTGGGG 57.581 39.130 0.00 0.00 0.00 4.96
4598 9849 6.229733 TGTTTGCCTCTTGATAAAAATTGGG 58.770 36.000 0.00 0.00 0.00 4.12
4600 9851 6.400303 CGCTGTTTGCCTCTTGATAAAAATTG 60.400 38.462 0.00 0.00 38.78 2.32
4601 9852 5.634859 CGCTGTTTGCCTCTTGATAAAAATT 59.365 36.000 0.00 0.00 38.78 1.82
4602 9853 5.048083 TCGCTGTTTGCCTCTTGATAAAAAT 60.048 36.000 0.00 0.00 38.78 1.82
4603 9854 4.277174 TCGCTGTTTGCCTCTTGATAAAAA 59.723 37.500 0.00 0.00 38.78 1.94
4604 9855 3.818210 TCGCTGTTTGCCTCTTGATAAAA 59.182 39.130 0.00 0.00 38.78 1.52
4605 9856 3.407698 TCGCTGTTTGCCTCTTGATAAA 58.592 40.909 0.00 0.00 38.78 1.40
4609 9865 0.392706 TCTCGCTGTTTGCCTCTTGA 59.607 50.000 0.00 0.00 38.78 3.02
4610 9866 0.514691 GTCTCGCTGTTTGCCTCTTG 59.485 55.000 0.00 0.00 38.78 3.02
4623 9879 5.552104 CGAGTATAACGATGTTTTGTCTCGC 60.552 44.000 0.00 0.00 35.58 5.03
4625 9881 7.681125 ATCGAGTATAACGATGTTTTGTCTC 57.319 36.000 12.97 0.00 46.35 3.36
4637 9893 1.328439 GGCTGCGATCGAGTATAACG 58.672 55.000 21.57 0.00 0.00 3.18
4651 9912 2.094597 TCATTGCACATACTTTGGCTGC 60.095 45.455 0.00 0.00 0.00 5.25
4654 9915 6.484818 AATTTTCATTGCACATACTTTGGC 57.515 33.333 0.00 0.00 0.00 4.52
4715 9976 6.182627 TGTGCTGATCATAGTCCATCTTTTT 58.817 36.000 0.00 0.00 0.00 1.94
4717 9978 5.363562 TGTGCTGATCATAGTCCATCTTT 57.636 39.130 0.00 0.00 0.00 2.52
4718 9979 5.163227 ACATGTGCTGATCATAGTCCATCTT 60.163 40.000 0.00 0.00 0.00 2.40
4719 9980 4.347292 ACATGTGCTGATCATAGTCCATCT 59.653 41.667 0.00 0.00 0.00 2.90
4720 9981 4.451435 CACATGTGCTGATCATAGTCCATC 59.549 45.833 13.94 0.00 0.00 3.51
4721 9982 4.102054 TCACATGTGCTGATCATAGTCCAT 59.898 41.667 21.38 0.00 0.00 3.41
4722 9983 3.451902 TCACATGTGCTGATCATAGTCCA 59.548 43.478 21.38 0.00 0.00 4.02
4725 9986 5.349061 TCTTCACATGTGCTGATCATAGT 57.651 39.130 21.38 0.00 0.00 2.12
4726 9987 7.958053 TTATCTTCACATGTGCTGATCATAG 57.042 36.000 25.68 12.48 0.00 2.23
4727 9988 7.769970 TGTTTATCTTCACATGTGCTGATCATA 59.230 33.333 25.68 15.17 0.00 2.15
4729 9990 5.939296 TGTTTATCTTCACATGTGCTGATCA 59.061 36.000 25.68 18.63 0.00 2.92
4730 9991 6.314648 TCTGTTTATCTTCACATGTGCTGATC 59.685 38.462 25.68 17.04 0.00 2.92
4733 9994 5.868043 TCTGTTTATCTTCACATGTGCTG 57.132 39.130 21.38 15.07 0.00 4.41
4734 9995 5.356190 CCATCTGTTTATCTTCACATGTGCT 59.644 40.000 21.38 7.96 0.00 4.40
4735 9996 5.355071 TCCATCTGTTTATCTTCACATGTGC 59.645 40.000 21.38 4.97 0.00 4.57
4738 9999 7.335171 TGTTCTCCATCTGTTTATCTTCACATG 59.665 37.037 0.00 0.00 0.00 3.21
4739 10000 7.397221 TGTTCTCCATCTGTTTATCTTCACAT 58.603 34.615 0.00 0.00 0.00 3.21
4740 10001 6.768483 TGTTCTCCATCTGTTTATCTTCACA 58.232 36.000 0.00 0.00 0.00 3.58
4742 10003 7.244886 TCTGTTCTCCATCTGTTTATCTTCA 57.755 36.000 0.00 0.00 0.00 3.02
4743 10004 8.729805 ATTCTGTTCTCCATCTGTTTATCTTC 57.270 34.615 0.00 0.00 0.00 2.87
4745 10006 7.855375 TGATTCTGTTCTCCATCTGTTTATCT 58.145 34.615 0.00 0.00 0.00 1.98
4748 10009 5.877012 GCTGATTCTGTTCTCCATCTGTTTA 59.123 40.000 0.00 0.00 0.00 2.01
4749 10010 4.699257 GCTGATTCTGTTCTCCATCTGTTT 59.301 41.667 0.00 0.00 0.00 2.83
4751 10012 3.518705 AGCTGATTCTGTTCTCCATCTGT 59.481 43.478 0.00 0.00 0.00 3.41
4752 10013 4.139859 AGCTGATTCTGTTCTCCATCTG 57.860 45.455 0.00 0.00 0.00 2.90
4753 10014 4.202243 GCTAGCTGATTCTGTTCTCCATCT 60.202 45.833 7.70 0.00 0.00 2.90
4754 10015 4.057432 GCTAGCTGATTCTGTTCTCCATC 58.943 47.826 7.70 0.00 0.00 3.51
4755 10016 3.710677 AGCTAGCTGATTCTGTTCTCCAT 59.289 43.478 18.57 0.00 0.00 3.41
4756 10017 3.102972 AGCTAGCTGATTCTGTTCTCCA 58.897 45.455 18.57 0.00 0.00 3.86
4757 10018 3.817709 AGCTAGCTGATTCTGTTCTCC 57.182 47.619 18.57 0.00 0.00 3.71
4758 10019 4.298332 GCTAGCTAGCTGATTCTGTTCTC 58.702 47.826 33.71 4.16 45.62 2.87
4759 10020 4.320608 GCTAGCTAGCTGATTCTGTTCT 57.679 45.455 33.71 0.00 45.62 3.01
4779 10040 1.586422 TCAGTTGTGAAGCTCTGTGC 58.414 50.000 0.00 0.00 43.29 4.57
4780 10041 4.142622 TGTTTTCAGTTGTGAAGCTCTGTG 60.143 41.667 0.00 0.00 43.66 3.66
4781 10042 4.009675 TGTTTTCAGTTGTGAAGCTCTGT 58.990 39.130 0.00 0.00 43.66 3.41
4783 10044 4.702131 AGTTGTTTTCAGTTGTGAAGCTCT 59.298 37.500 0.00 0.00 43.66 4.09
4785 10046 5.163513 CAAGTTGTTTTCAGTTGTGAAGCT 58.836 37.500 0.00 0.00 43.66 3.74
4786 10047 4.923281 ACAAGTTGTTTTCAGTTGTGAAGC 59.077 37.500 1.64 0.00 43.66 3.86
4787 10048 7.526608 TCTACAAGTTGTTTTCAGTTGTGAAG 58.473 34.615 14.90 0.55 43.66 3.02
4788 10049 7.441890 TCTACAAGTTGTTTTCAGTTGTGAA 57.558 32.000 14.90 0.00 41.13 3.18
4790 10051 7.429340 GTGATCTACAAGTTGTTTTCAGTTGTG 59.571 37.037 14.90 0.00 38.43 3.33
4791 10052 7.415206 GGTGATCTACAAGTTGTTTTCAGTTGT 60.415 37.037 14.90 0.00 39.97 3.32
4792 10053 6.912591 GGTGATCTACAAGTTGTTTTCAGTTG 59.087 38.462 14.90 0.00 34.10 3.16
4793 10054 6.039382 GGGTGATCTACAAGTTGTTTTCAGTT 59.961 38.462 14.90 0.31 0.00 3.16
4794 10055 5.531287 GGGTGATCTACAAGTTGTTTTCAGT 59.469 40.000 14.90 0.00 0.00 3.41
4797 10058 4.083484 CGGGGTGATCTACAAGTTGTTTTC 60.083 45.833 14.90 9.32 0.00 2.29
4798 10059 3.818773 CGGGGTGATCTACAAGTTGTTTT 59.181 43.478 14.90 0.00 0.00 2.43
4799 10060 3.181448 ACGGGGTGATCTACAAGTTGTTT 60.181 43.478 14.90 0.00 0.00 2.83
4800 10061 2.370849 ACGGGGTGATCTACAAGTTGTT 59.629 45.455 14.90 0.00 0.00 2.83
4801 10062 1.975680 ACGGGGTGATCTACAAGTTGT 59.024 47.619 14.05 14.05 0.00 3.32
4803 10064 3.167485 TGTACGGGGTGATCTACAAGTT 58.833 45.455 0.00 0.00 0.00 2.66
4804 10065 2.811410 TGTACGGGGTGATCTACAAGT 58.189 47.619 0.00 0.00 0.00 3.16
4806 10067 2.498481 CCTTGTACGGGGTGATCTACAA 59.502 50.000 0.00 0.00 0.00 2.41
4807 10068 2.104967 CCTTGTACGGGGTGATCTACA 58.895 52.381 0.00 0.00 0.00 2.74
4808 10069 2.105766 ACCTTGTACGGGGTGATCTAC 58.894 52.381 8.50 0.00 34.16 2.59
4810 10071 1.553704 GAACCTTGTACGGGGTGATCT 59.446 52.381 9.81 0.00 35.81 2.75
4811 10072 1.276989 TGAACCTTGTACGGGGTGATC 59.723 52.381 9.81 6.20 35.81 2.92
4812 10073 1.002773 GTGAACCTTGTACGGGGTGAT 59.997 52.381 9.81 0.00 35.81 3.06
4813 10074 0.393820 GTGAACCTTGTACGGGGTGA 59.606 55.000 9.81 0.00 35.81 4.02
4814 10075 0.604511 GGTGAACCTTGTACGGGGTG 60.605 60.000 9.81 0.00 35.81 4.61
4815 10076 0.765519 AGGTGAACCTTGTACGGGGT 60.766 55.000 9.10 6.68 46.09 4.95
4826 10087 1.177401 GGATTGCTTGGAGGTGAACC 58.823 55.000 0.00 0.00 0.00 3.62
4827 10088 2.206576 AGGATTGCTTGGAGGTGAAC 57.793 50.000 0.00 0.00 0.00 3.18
4828 10089 3.308402 CCTTAGGATTGCTTGGAGGTGAA 60.308 47.826 0.00 0.00 0.00 3.18
4829 10090 2.239654 CCTTAGGATTGCTTGGAGGTGA 59.760 50.000 0.00 0.00 0.00 4.02
4830 10091 2.239654 TCCTTAGGATTGCTTGGAGGTG 59.760 50.000 0.00 0.00 0.00 4.00
4831 10092 2.507471 CTCCTTAGGATTGCTTGGAGGT 59.493 50.000 0.00 0.00 37.87 3.85
4833 10094 2.172293 AGCTCCTTAGGATTGCTTGGAG 59.828 50.000 8.94 16.87 42.68 3.86
4834 10095 2.171448 GAGCTCCTTAGGATTGCTTGGA 59.829 50.000 14.89 0.00 34.13 3.53
4836 10097 3.465871 GAGAGCTCCTTAGGATTGCTTG 58.534 50.000 14.89 0.00 34.13 4.01
4837 10098 2.437651 GGAGAGCTCCTTAGGATTGCTT 59.562 50.000 14.89 6.67 46.16 3.91
4838 10099 2.046292 GGAGAGCTCCTTAGGATTGCT 58.954 52.381 13.84 13.84 46.16 3.91
4839 10100 2.542020 GGAGAGCTCCTTAGGATTGC 57.458 55.000 10.93 2.51 46.16 3.56
4849 10110 5.688224 CGATCATCGTCAAGGAGAGCTCC 62.688 56.522 10.93 8.50 41.57 4.70
4850 10111 2.604373 CGATCATCGTCAAGGAGAGCTC 60.604 54.545 5.27 5.27 34.72 4.09
4851 10112 1.336440 CGATCATCGTCAAGGAGAGCT 59.664 52.381 0.00 0.00 34.72 4.09
4856 10117 1.950216 CTCCTCGATCATCGTCAAGGA 59.050 52.381 13.76 13.76 37.85 3.36
4859 10120 0.385751 GGCTCCTCGATCATCGTCAA 59.614 55.000 7.00 0.00 41.35 3.18
4860 10121 1.456196 GGGCTCCTCGATCATCGTCA 61.456 60.000 7.00 0.00 41.35 4.35
4862 10123 2.556459 CGGGCTCCTCGATCATCGT 61.556 63.158 7.00 0.00 41.35 3.73
4864 10125 0.959553 TTACGGGCTCCTCGATCATC 59.040 55.000 0.00 0.00 0.00 2.92
4865 10126 0.962489 CTTACGGGCTCCTCGATCAT 59.038 55.000 0.00 0.00 0.00 2.45
4867 10128 1.007154 GCTTACGGGCTCCTCGATC 60.007 63.158 0.00 0.00 0.00 3.69
4868 10129 1.115930 ATGCTTACGGGCTCCTCGAT 61.116 55.000 0.00 0.00 0.00 3.59
4869 10130 1.327690 AATGCTTACGGGCTCCTCGA 61.328 55.000 0.00 0.00 0.00 4.04
4871 10132 1.017387 CAAATGCTTACGGGCTCCTC 58.983 55.000 0.00 0.00 0.00 3.71
4872 10133 0.618458 TCAAATGCTTACGGGCTCCT 59.382 50.000 0.00 0.00 0.00 3.69
4874 10135 2.024176 TCTCAAATGCTTACGGGCTC 57.976 50.000 0.00 0.00 0.00 4.70
4875 10136 2.359900 CTTCTCAAATGCTTACGGGCT 58.640 47.619 0.00 0.00 0.00 5.19
4877 10138 1.062587 CGCTTCTCAAATGCTTACGGG 59.937 52.381 0.00 0.00 0.00 5.28
4880 10141 2.223135 GCTCCGCTTCTCAAATGCTTAC 60.223 50.000 0.00 0.00 0.00 2.34
4888 10988 0.952497 CAAGCTGCTCCGCTTCTCAA 60.952 55.000 1.00 0.00 46.68 3.02
4897 10997 3.184683 CGACGCTCAAGCTGCTCC 61.185 66.667 1.00 0.00 39.32 4.70
4912 11012 4.240881 AGTGGAAGGTACTATACACCGA 57.759 45.455 9.34 0.00 38.49 4.69
4913 11013 4.159135 ACAAGTGGAAGGTACTATACACCG 59.841 45.833 9.34 5.27 38.49 4.94
4915 11015 7.401955 ACTACAAGTGGAAGGTACTATACAC 57.598 40.000 5.87 5.87 38.49 2.90
4916 11016 8.108999 TGTACTACAAGTGGAAGGTACTATACA 58.891 37.037 0.00 0.00 38.49 2.29
4917 11017 8.511604 TGTACTACAAGTGGAAGGTACTATAC 57.488 38.462 0.00 0.00 38.49 1.47
4918 11018 9.532494 TTTGTACTACAAGTGGAAGGTACTATA 57.468 33.333 1.95 0.00 39.53 1.31
4920 11020 7.039504 CCTTTGTACTACAAGTGGAAGGTACTA 60.040 40.741 13.60 0.00 39.53 1.82
4926 11026 4.691216 GCTCCTTTGTACTACAAGTGGAAG 59.309 45.833 18.46 15.01 39.86 3.46
4937 11037 2.616510 GCATGGTGAGCTCCTTTGTACT 60.617 50.000 12.15 0.00 0.00 2.73
4959 11059 4.495422 GAGAAGTCTGAAATGCGTCCTAA 58.505 43.478 0.00 0.00 0.00 2.69
4963 11063 2.688507 TGGAGAAGTCTGAAATGCGTC 58.311 47.619 0.00 0.00 0.00 5.19
4965 11065 3.070018 ACTTGGAGAAGTCTGAAATGCG 58.930 45.455 0.00 0.00 38.01 4.73
4974 11074 1.903183 AGGGTAGCACTTGGAGAAGTC 59.097 52.381 0.00 0.00 40.68 3.01
4981 11081 1.880027 GTGTTTCAGGGTAGCACTTGG 59.120 52.381 0.00 0.00 0.00 3.61
4989 11089 6.263392 TCGAAATGAATTTGTGTTTCAGGGTA 59.737 34.615 0.00 0.00 36.60 3.69
4995 11095 6.509317 TGCTTCGAAATGAATTTGTGTTTC 57.491 33.333 0.00 0.00 35.63 2.78
4997 11097 5.234116 GGTTGCTTCGAAATGAATTTGTGTT 59.766 36.000 0.00 0.00 35.63 3.32
5012 11112 1.398390 GTGGAGCTTATGGTTGCTTCG 59.602 52.381 0.00 0.00 39.91 3.79
5020 11120 2.945668 GCTACCTTTGTGGAGCTTATGG 59.054 50.000 0.00 0.00 39.71 2.74
5021 11121 3.609853 TGCTACCTTTGTGGAGCTTATG 58.390 45.455 0.00 0.00 38.73 1.90
5078 11178 8.778358 GGTGATTTAGCTATCCATTGTAAGAAG 58.222 37.037 0.00 0.00 0.00 2.85
5084 11184 7.560991 TCATTTGGTGATTTAGCTATCCATTGT 59.439 33.333 0.00 0.00 0.00 2.71
5089 11189 7.807977 TTCTCATTTGGTGATTTAGCTATCC 57.192 36.000 0.00 0.00 35.97 2.59
5112 11212 4.946160 TGGTTGATATCCCACTTCCTTT 57.054 40.909 0.00 0.00 0.00 3.11
5120 11220 4.248174 TGCTGAAATGGTTGATATCCCA 57.752 40.909 0.00 1.53 34.66 4.37
5140 11240 9.790389 TGGCCGTTAATACTTAACAAATAATTG 57.210 29.630 0.00 0.00 44.40 2.32
5150 11250 4.897140 ACACTGTGGCCGTTAATACTTAA 58.103 39.130 13.09 0.00 0.00 1.85
5151 11251 4.540359 ACACTGTGGCCGTTAATACTTA 57.460 40.909 13.09 0.00 0.00 2.24
5156 11256 3.938963 CTGATTACACTGTGGCCGTTAAT 59.061 43.478 13.09 6.53 0.00 1.40
5162 11262 3.334583 TTCTCTGATTACACTGTGGCC 57.665 47.619 13.09 0.00 0.00 5.36
5163 11263 4.997395 TCTTTTCTCTGATTACACTGTGGC 59.003 41.667 13.09 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.