Multiple sequence alignment - TraesCS3D01G313800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G313800 chr3D 100.000 9187 0 0 1 9187 427802032 427811218 0.000000e+00 16966.0
1 TraesCS3D01G313800 chr3D 85.057 435 53 11 7335 7768 567481621 567482044 5.100000e-117 433.0
2 TraesCS3D01G313800 chr3B 95.177 4748 148 28 1290 5980 559327653 559332376 0.000000e+00 7424.0
3 TraesCS3D01G313800 chr3B 91.983 2844 134 41 5905 8699 559332343 559335141 0.000000e+00 3903.0
4 TraesCS3D01G313800 chr3B 90.331 724 35 14 439 1147 559326645 559327348 0.000000e+00 917.0
5 TraesCS3D01G313800 chr3B 97.297 333 9 0 8855 9187 559335346 559335678 4.810000e-157 566.0
6 TraesCS3D01G313800 chr3A 94.293 4556 144 35 1483 5980 557963176 557958679 0.000000e+00 6866.0
7 TraesCS3D01G313800 chr3A 91.507 2873 143 48 5905 8702 557958712 557955866 0.000000e+00 3860.0
8 TraesCS3D01G313800 chr3A 84.395 1224 87 52 1 1197 557965121 557963975 0.000000e+00 1107.0
9 TraesCS3D01G313800 chr3A 91.768 413 20 7 8781 9187 557955751 557955347 6.230000e-156 562.0
10 TraesCS3D01G313800 chr3A 89.130 184 12 5 1300 1478 557963563 557963383 1.200000e-53 222.0
11 TraesCS3D01G313800 chr2B 86.758 438 47 10 7334 7770 762953641 762954068 2.320000e-130 477.0
12 TraesCS3D01G313800 chr7B 85.845 438 50 11 7335 7770 92029812 92029385 1.090000e-123 455.0
13 TraesCS3D01G313800 chr6B 85.877 439 49 11 7334 7770 692086364 692086791 1.090000e-123 455.0
14 TraesCS3D01G313800 chr1B 87.097 403 39 12 7334 7734 500421863 500422254 2.350000e-120 444.0
15 TraesCS3D01G313800 chr1B 91.667 48 4 0 408 455 561388896 561388849 5.950000e-07 67.6
16 TraesCS3D01G313800 chr4A 84.300 293 38 8 7492 7784 35200523 35200807 7.020000e-71 279.0
17 TraesCS3D01G313800 chr4A 93.478 46 3 0 407 452 29155328 29155373 1.660000e-07 69.4
18 TraesCS3D01G313800 chr4A 89.796 49 4 1 404 452 101932004 101932051 2.770000e-05 62.1
19 TraesCS3D01G313800 chr6D 84.429 289 37 8 7500 7788 81042052 81042332 2.530000e-70 278.0
20 TraesCS3D01G313800 chr6D 83.051 295 41 4 6267 6556 36216952 36217242 9.150000e-65 259.0
21 TraesCS3D01G313800 chr6D 89.583 48 5 0 405 452 93529411 93529458 2.770000e-05 62.1
22 TraesCS3D01G313800 chr5B 93.642 173 10 1 1793 1964 315944231 315944403 3.290000e-64 257.0
23 TraesCS3D01G313800 chr5A 92.486 173 12 1 1793 1964 367136998 367137170 7.120000e-61 246.0
24 TraesCS3D01G313800 chr5D 91.954 174 12 2 1793 1964 277825463 277825636 9.220000e-60 243.0
25 TraesCS3D01G313800 chr1A 97.619 42 1 0 413 454 557887638 557887597 1.280000e-08 73.1
26 TraesCS3D01G313800 chr6A 95.455 44 2 0 414 457 609594969 609594926 4.600000e-08 71.3
27 TraesCS3D01G313800 chrUn 85.075 67 9 1 414 480 224655121 224655186 5.950000e-07 67.6
28 TraesCS3D01G313800 chr7D 97.436 39 1 0 414 452 39532149 39532187 5.950000e-07 67.6
29 TraesCS3D01G313800 chr1D 95.238 42 2 0 414 455 311345332 311345373 5.950000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G313800 chr3D 427802032 427811218 9186 False 16966.0 16966 100.0000 1 9187 1 chr3D.!!$F1 9186
1 TraesCS3D01G313800 chr3B 559326645 559335678 9033 False 3202.5 7424 93.6970 439 9187 4 chr3B.!!$F1 8748
2 TraesCS3D01G313800 chr3A 557955347 557965121 9774 True 2523.4 6866 90.2186 1 9187 5 chr3A.!!$R1 9186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 600 0.533308 TTCCGTTCCGTTCCAACAGG 60.533 55.000 0.00 0.0 0.00 4.00 F
1219 1254 0.038526 TCTCTTCTGGTTCGCGGTTC 60.039 55.000 6.13 0.0 0.00 3.62 F
1298 1642 1.084018 TCCCCTTTCCTGGCAATCTT 58.916 50.000 0.00 0.0 0.00 2.40 F
3101 3660 0.718343 GATCGAGTTGCACTGCTGTC 59.282 55.000 1.98 0.0 0.00 3.51 F
4571 5180 1.412079 ATGCTCTTGGTGTTTTGCCA 58.588 45.000 0.00 0.0 0.00 4.92 F
4721 5330 4.019174 AGTCAGGAATTGGTATGGCTTTG 58.981 43.478 0.00 0.0 0.00 2.77 F
6066 6750 0.623324 ATCCTGAATCCCGAACCCCA 60.623 55.000 0.00 0.0 0.00 4.96 F
7662 8379 0.252742 ACTTCACTCGGGGAAGGGAT 60.253 55.000 16.87 0.0 44.69 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 2209 1.147817 AGTTTCCATTGAGCCCAACCT 59.852 47.619 0.00 0.00 34.72 3.50 R
3048 3607 0.725784 GACCGCACAACTGCATTTCG 60.726 55.000 0.00 0.00 44.50 3.46 R
3338 3897 5.963594 TGAAAATCAATGCATCGGATTTGA 58.036 33.333 26.85 16.74 40.17 2.69 R
4628 5237 1.273327 GGCTTTGCAGTGCTACCATTT 59.727 47.619 17.60 0.00 0.00 2.32 R
5712 6347 0.970640 TCCTAACGGCACAGCAACTA 59.029 50.000 0.00 0.00 0.00 2.24 R
6384 7072 2.365582 TCGATTGGACTCGTCATCTCA 58.634 47.619 0.00 0.00 39.62 3.27 R
8015 8752 0.107654 GCTCGGTGCATAAAGGGAGT 60.108 55.000 0.00 0.00 42.31 3.85 R
8678 9435 0.174389 AGCTGGTCATAGACTGCACG 59.826 55.000 14.20 0.00 35.70 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.844696 ATGTAAGGCACATATGAGTTTACG 57.155 37.500 10.38 0.00 46.34 3.18
31 32 3.531538 AGGCACATATGAGTTTACGTGG 58.468 45.455 10.38 0.00 0.00 4.94
41 42 3.070446 TGAGTTTACGTGGGTGAGACATT 59.930 43.478 0.00 0.00 0.00 2.71
42 43 4.062991 GAGTTTACGTGGGTGAGACATTT 58.937 43.478 0.00 0.00 0.00 2.32
45 46 5.008316 AGTTTACGTGGGTGAGACATTTTTC 59.992 40.000 0.00 0.00 0.00 2.29
50 51 3.564225 GTGGGTGAGACATTTTTCTTCGT 59.436 43.478 0.00 0.00 0.00 3.85
62 63 6.811170 ACATTTTTCTTCGTCATCTCTCTCTC 59.189 38.462 0.00 0.00 0.00 3.20
71 72 4.038522 CGTCATCTCTCTCTCTCTCTCTCT 59.961 50.000 0.00 0.00 0.00 3.10
73 74 5.304101 GTCATCTCTCTCTCTCTCTCTCTCT 59.696 48.000 0.00 0.00 0.00 3.10
74 75 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
75 76 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
80 81 4.160439 TCTCTCTCTCTCTCTCTCACTCAC 59.840 50.000 0.00 0.00 0.00 3.51
84 85 5.630121 TCTCTCTCTCTCTCACTCACTTTT 58.370 41.667 0.00 0.00 0.00 2.27
90 91 5.083122 TCTCTCTCACTCACTTTTCCATCT 58.917 41.667 0.00 0.00 0.00 2.90
95 96 4.389374 TCACTCACTTTTCCATCTCAACC 58.611 43.478 0.00 0.00 0.00 3.77
96 97 4.136796 CACTCACTTTTCCATCTCAACCA 58.863 43.478 0.00 0.00 0.00 3.67
124 125 5.160607 TCTTTGGATAAGTCGTTCCATGT 57.839 39.130 0.00 0.00 41.52 3.21
129 130 4.223255 TGGATAAGTCGTTCCATGTAACCA 59.777 41.667 0.00 0.00 37.10 3.67
139 140 5.236478 CGTTCCATGTAACCATTCTACCATC 59.764 44.000 0.00 0.00 0.00 3.51
142 143 5.372363 TCCATGTAACCATTCTACCATCCAT 59.628 40.000 0.00 0.00 0.00 3.41
145 146 5.436175 TGTAACCATTCTACCATCCATGTG 58.564 41.667 0.00 0.00 0.00 3.21
156 157 4.265073 ACCATCCATGTGCTCTCTTTAAC 58.735 43.478 0.00 0.00 0.00 2.01
157 158 4.018960 ACCATCCATGTGCTCTCTTTAACT 60.019 41.667 0.00 0.00 0.00 2.24
160 161 5.086104 TCCATGTGCTCTCTTTAACTACC 57.914 43.478 0.00 0.00 0.00 3.18
165 166 7.417911 CCATGTGCTCTCTTTAACTACCTATCA 60.418 40.741 0.00 0.00 0.00 2.15
168 169 5.656859 TGCTCTCTTTAACTACCTATCAGCA 59.343 40.000 0.00 0.00 0.00 4.41
179 180 6.810911 ACTACCTATCAGCAACAACTATCTG 58.189 40.000 0.00 0.00 0.00 2.90
182 183 4.101585 CCTATCAGCAACAACTATCTGGGA 59.898 45.833 0.00 0.00 0.00 4.37
183 184 4.785346 ATCAGCAACAACTATCTGGGAT 57.215 40.909 0.00 0.00 0.00 3.85
186 187 6.994421 TCAGCAACAACTATCTGGGATATA 57.006 37.500 0.00 0.00 0.00 0.86
197 198 7.019388 ACTATCTGGGATATACCAATGTCACT 58.981 38.462 8.38 0.00 40.68 3.41
201 202 5.680619 TGGGATATACCAATGTCACTGAAC 58.319 41.667 3.37 0.00 41.20 3.18
203 204 5.163195 GGGATATACCAATGTCACTGAACCT 60.163 44.000 0.00 0.00 41.20 3.50
210 211 4.389374 CAATGTCACTGAACCTAACACCT 58.611 43.478 0.00 0.00 0.00 4.00
253 254 2.932614 CAACTGTCAACCGATCTCCATC 59.067 50.000 0.00 0.00 0.00 3.51
261 262 3.258225 CGATCTCCATCGTGGTGTC 57.742 57.895 4.33 3.00 45.90 3.67
262 263 0.741326 CGATCTCCATCGTGGTGTCT 59.259 55.000 4.33 0.00 45.90 3.41
263 264 1.268794 CGATCTCCATCGTGGTGTCTC 60.269 57.143 4.33 3.95 45.90 3.36
264 265 1.751351 GATCTCCATCGTGGTGTCTCA 59.249 52.381 4.33 0.00 39.03 3.27
265 266 1.852633 TCTCCATCGTGGTGTCTCAT 58.147 50.000 4.33 0.00 39.03 2.90
267 268 3.361786 TCTCCATCGTGGTGTCTCATAA 58.638 45.455 4.33 0.00 39.03 1.90
268 269 3.960755 TCTCCATCGTGGTGTCTCATAAT 59.039 43.478 4.33 0.00 39.03 1.28
269 270 4.038042 TCTCCATCGTGGTGTCTCATAATC 59.962 45.833 4.33 0.00 39.03 1.75
270 271 3.960755 TCCATCGTGGTGTCTCATAATCT 59.039 43.478 4.33 0.00 39.03 2.40
272 273 4.202151 CCATCGTGGTGTCTCATAATCTCA 60.202 45.833 0.00 0.00 31.35 3.27
273 274 4.371855 TCGTGGTGTCTCATAATCTCAC 57.628 45.455 0.00 0.00 0.00 3.51
274 275 3.108881 CGTGGTGTCTCATAATCTCACG 58.891 50.000 0.00 0.00 40.14 4.35
276 277 4.498177 CGTGGTGTCTCATAATCTCACGAT 60.498 45.833 0.00 0.00 46.20 3.73
278 279 4.889995 TGGTGTCTCATAATCTCACGATCT 59.110 41.667 0.00 0.00 0.00 2.75
279 280 5.009110 TGGTGTCTCATAATCTCACGATCTC 59.991 44.000 0.00 0.00 0.00 2.75
280 281 5.457140 GTGTCTCATAATCTCACGATCTCC 58.543 45.833 0.00 0.00 0.00 3.71
281 282 5.009110 GTGTCTCATAATCTCACGATCTCCA 59.991 44.000 0.00 0.00 0.00 3.86
282 283 5.772169 TGTCTCATAATCTCACGATCTCCAT 59.228 40.000 0.00 0.00 0.00 3.41
283 284 6.092092 GTCTCATAATCTCACGATCTCCATG 58.908 44.000 0.00 0.00 0.00 3.66
284 285 5.772169 TCTCATAATCTCACGATCTCCATGT 59.228 40.000 0.00 0.00 0.00 3.21
285 286 6.018589 TCATAATCTCACGATCTCCATGTC 57.981 41.667 0.00 0.00 0.00 3.06
286 287 5.536161 TCATAATCTCACGATCTCCATGTCA 59.464 40.000 0.00 0.00 0.00 3.58
287 288 3.724508 ATCTCACGATCTCCATGTCAC 57.275 47.619 0.00 0.00 0.00 3.67
288 289 2.446435 TCTCACGATCTCCATGTCACA 58.554 47.619 0.00 0.00 0.00 3.58
289 290 3.026694 TCTCACGATCTCCATGTCACAT 58.973 45.455 0.00 0.00 0.00 3.21
290 291 3.448660 TCTCACGATCTCCATGTCACATT 59.551 43.478 0.00 0.00 0.00 2.71
291 292 4.081476 TCTCACGATCTCCATGTCACATTT 60.081 41.667 0.00 0.00 0.00 2.32
292 293 5.127031 TCTCACGATCTCCATGTCACATTTA 59.873 40.000 0.00 0.00 0.00 1.40
293 294 5.351458 TCACGATCTCCATGTCACATTTAG 58.649 41.667 0.00 0.00 0.00 1.85
294 295 4.025396 CACGATCTCCATGTCACATTTAGC 60.025 45.833 0.00 0.00 0.00 3.09
295 296 4.122046 CGATCTCCATGTCACATTTAGCA 58.878 43.478 0.00 0.00 0.00 3.49
296 297 4.571984 CGATCTCCATGTCACATTTAGCAA 59.428 41.667 0.00 0.00 0.00 3.91
297 298 5.277202 CGATCTCCATGTCACATTTAGCAAG 60.277 44.000 0.00 0.00 0.00 4.01
298 299 4.264253 TCTCCATGTCACATTTAGCAAGG 58.736 43.478 0.00 0.00 0.00 3.61
299 300 4.012374 CTCCATGTCACATTTAGCAAGGT 58.988 43.478 0.00 0.00 0.00 3.50
300 301 5.045942 TCTCCATGTCACATTTAGCAAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
301 302 5.185454 TCCATGTCACATTTAGCAAGGTAG 58.815 41.667 0.00 0.00 0.00 3.18
302 303 4.943705 CCATGTCACATTTAGCAAGGTAGT 59.056 41.667 0.00 0.00 0.00 2.73
317 318 5.586243 GCAAGGTAGTACACATGATCAACAT 59.414 40.000 0.00 0.00 40.17 2.71
322 323 7.334421 AGGTAGTACACATGATCAACATTTCAC 59.666 37.037 0.00 0.00 37.07 3.18
324 325 6.003326 AGTACACATGATCAACATTTCACCA 58.997 36.000 0.00 0.00 37.07 4.17
327 328 6.580788 ACACATGATCAACATTTCACCAAAA 58.419 32.000 0.00 0.00 37.07 2.44
328 329 7.218614 ACACATGATCAACATTTCACCAAAAT 58.781 30.769 0.00 0.00 38.11 1.82
330 331 9.205719 CACATGATCAACATTTCACCAAAATAA 57.794 29.630 0.00 0.00 35.77 1.40
331 332 9.947433 ACATGATCAACATTTCACCAAAATAAT 57.053 25.926 0.00 0.00 35.77 1.28
370 371 3.413327 GTCTCATCTAGACGATAGGGCA 58.587 50.000 0.00 0.00 45.05 5.36
371 372 3.821600 GTCTCATCTAGACGATAGGGCAA 59.178 47.826 0.00 0.00 45.05 4.52
372 373 4.278669 GTCTCATCTAGACGATAGGGCAAA 59.721 45.833 0.00 0.00 45.05 3.68
373 374 5.047660 GTCTCATCTAGACGATAGGGCAAAT 60.048 44.000 0.00 0.00 45.05 2.32
374 375 5.047731 TCTCATCTAGACGATAGGGCAAATG 60.048 44.000 0.00 0.00 43.77 2.32
375 376 3.386768 TCTAGACGATAGGGCAAATGC 57.613 47.619 0.00 0.00 43.77 3.56
376 377 2.698274 TCTAGACGATAGGGCAAATGCA 59.302 45.455 7.80 0.00 41.13 3.96
377 378 1.668419 AGACGATAGGGCAAATGCAC 58.332 50.000 7.80 3.16 46.94 4.57
418 419 5.178809 CGATTCAATCGGTATTTCTTACCCC 59.821 44.000 12.24 0.00 46.76 4.95
419 420 4.426736 TCAATCGGTATTTCTTACCCCC 57.573 45.455 0.00 0.00 46.76 5.40
420 421 4.042174 TCAATCGGTATTTCTTACCCCCT 58.958 43.478 0.00 0.00 46.76 4.79
421 422 4.102054 TCAATCGGTATTTCTTACCCCCTC 59.898 45.833 0.00 0.00 46.76 4.30
426 427 4.262506 CGGTATTTCTTACCCCCTCTGATC 60.263 50.000 0.00 0.00 46.76 2.92
455 456 7.739498 ATAAGTGTCGTGGTTTTAGTTGAAT 57.261 32.000 0.00 0.00 0.00 2.57
456 457 8.836268 ATAAGTGTCGTGGTTTTAGTTGAATA 57.164 30.769 0.00 0.00 0.00 1.75
457 458 6.780706 AGTGTCGTGGTTTTAGTTGAATAG 57.219 37.500 0.00 0.00 0.00 1.73
468 469 8.184848 GGTTTTAGTTGAATAGAAAGCTGGATC 58.815 37.037 0.00 0.00 0.00 3.36
470 471 3.873952 AGTTGAATAGAAAGCTGGATCGC 59.126 43.478 0.00 0.00 0.00 4.58
471 472 3.827008 TGAATAGAAAGCTGGATCGCT 57.173 42.857 0.00 0.00 43.31 4.93
533 535 2.629656 CCCTTTCCACAGCAAGGCG 61.630 63.158 0.00 0.00 38.67 5.52
539 541 4.332637 CACAGCAAGGCGGTGCAC 62.333 66.667 8.80 8.80 45.90 4.57
598 600 0.533308 TTCCGTTCCGTTCCAACAGG 60.533 55.000 0.00 0.00 0.00 4.00
640 644 3.427638 GGAACCTTTCCTTTATTGCGCTC 60.428 47.826 9.73 0.00 46.57 5.03
697 701 4.066139 CAAGGGGAAGGGGCAGGG 62.066 72.222 0.00 0.00 0.00 4.45
771 778 1.209019 CTCCACACCCATCCTTCTCAG 59.791 57.143 0.00 0.00 0.00 3.35
772 779 0.987294 CCACACCCATCCTTCTCAGT 59.013 55.000 0.00 0.00 0.00 3.41
773 780 1.352352 CCACACCCATCCTTCTCAGTT 59.648 52.381 0.00 0.00 0.00 3.16
774 781 2.616510 CCACACCCATCCTTCTCAGTTC 60.617 54.545 0.00 0.00 0.00 3.01
775 782 2.304180 CACACCCATCCTTCTCAGTTCT 59.696 50.000 0.00 0.00 0.00 3.01
776 783 2.982488 ACACCCATCCTTCTCAGTTCTT 59.018 45.455 0.00 0.00 0.00 2.52
777 784 4.020218 CACACCCATCCTTCTCAGTTCTTA 60.020 45.833 0.00 0.00 0.00 2.10
814 839 3.118112 AGCAAGAGAGAGAGAGAGGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
840 865 4.583254 CGGCTCTCGTCTCGCTCG 62.583 72.222 0.00 0.00 0.00 5.03
841 866 4.897856 GGCTCTCGTCTCGCTCGC 62.898 72.222 0.00 0.00 0.00 5.03
842 867 4.897856 GCTCTCGTCTCGCTCGCC 62.898 72.222 0.00 0.00 0.00 5.54
843 868 4.244802 CTCTCGTCTCGCTCGCCC 62.245 72.222 0.00 0.00 0.00 6.13
848 873 4.516195 GTCTCGCTCGCCCCCTTC 62.516 72.222 0.00 0.00 0.00 3.46
849 874 4.761058 TCTCGCTCGCCCCCTTCT 62.761 66.667 0.00 0.00 0.00 2.85
1084 1116 0.663153 GCTGTTCTTGGTTCACGCTT 59.337 50.000 0.00 0.00 0.00 4.68
1114 1146 0.393808 GATTTAGCTCACGGGGGCAA 60.394 55.000 14.56 0.00 0.00 4.52
1117 1149 1.899437 TTAGCTCACGGGGGCAAGAG 61.899 60.000 14.56 0.00 0.00 2.85
1119 1154 3.322466 CTCACGGGGGCAAGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
1120 1155 3.612247 CTCACGGGGGCAAGAGGTG 62.612 68.421 0.00 0.00 0.00 4.00
1132 1167 2.036475 GCAAGAGGTGACTGTCTCTTCA 59.964 50.000 19.59 0.00 45.38 3.02
1135 1170 2.298729 AGAGGTGACTGTCTCTTCAAGC 59.701 50.000 19.59 5.05 44.43 4.01
1179 1214 2.289072 CCAGCGGACGGAGATTGATATT 60.289 50.000 0.00 0.00 0.00 1.28
1180 1215 2.989840 CAGCGGACGGAGATTGATATTC 59.010 50.000 0.00 0.00 0.00 1.75
1198 1233 2.566010 CCCCCGCAAATTCGTGTG 59.434 61.111 0.00 0.00 0.00 3.82
1199 1234 2.265182 CCCCCGCAAATTCGTGTGT 61.265 57.895 0.00 0.00 0.00 3.72
1200 1235 1.657556 CCCCGCAAATTCGTGTGTT 59.342 52.632 0.00 0.00 0.00 3.32
1201 1236 0.386731 CCCCGCAAATTCGTGTGTTC 60.387 55.000 0.00 0.00 0.00 3.18
1202 1237 0.591170 CCCGCAAATTCGTGTGTTCT 59.409 50.000 0.00 0.00 0.00 3.01
1203 1238 1.399727 CCCGCAAATTCGTGTGTTCTC 60.400 52.381 0.00 0.00 0.00 2.87
1204 1239 1.531149 CCGCAAATTCGTGTGTTCTCT 59.469 47.619 0.00 0.00 0.00 3.10
1205 1240 2.032030 CCGCAAATTCGTGTGTTCTCTT 60.032 45.455 0.00 0.00 0.00 2.85
1206 1241 3.218398 CGCAAATTCGTGTGTTCTCTTC 58.782 45.455 0.00 0.00 0.00 2.87
1207 1242 3.059597 CGCAAATTCGTGTGTTCTCTTCT 60.060 43.478 0.00 0.00 0.00 2.85
1208 1243 4.214437 GCAAATTCGTGTGTTCTCTTCTG 58.786 43.478 0.00 0.00 0.00 3.02
1209 1244 4.776743 CAAATTCGTGTGTTCTCTTCTGG 58.223 43.478 0.00 0.00 0.00 3.86
1210 1245 3.753294 ATTCGTGTGTTCTCTTCTGGT 57.247 42.857 0.00 0.00 0.00 4.00
1211 1246 3.536956 TTCGTGTGTTCTCTTCTGGTT 57.463 42.857 0.00 0.00 0.00 3.67
1212 1247 3.093717 TCGTGTGTTCTCTTCTGGTTC 57.906 47.619 0.00 0.00 0.00 3.62
1213 1248 1.787155 CGTGTGTTCTCTTCTGGTTCG 59.213 52.381 0.00 0.00 0.00 3.95
1214 1249 1.527311 GTGTGTTCTCTTCTGGTTCGC 59.473 52.381 0.00 0.00 0.00 4.70
1215 1250 0.784778 GTGTTCTCTTCTGGTTCGCG 59.215 55.000 0.00 0.00 0.00 5.87
1216 1251 0.319555 TGTTCTCTTCTGGTTCGCGG 60.320 55.000 6.13 0.00 0.00 6.46
1217 1252 0.319641 GTTCTCTTCTGGTTCGCGGT 60.320 55.000 6.13 0.00 0.00 5.68
1218 1253 0.391597 TTCTCTTCTGGTTCGCGGTT 59.608 50.000 6.13 0.00 0.00 4.44
1219 1254 0.038526 TCTCTTCTGGTTCGCGGTTC 60.039 55.000 6.13 0.00 0.00 3.62
1220 1255 1.344942 CTCTTCTGGTTCGCGGTTCG 61.345 60.000 6.13 0.00 40.15 3.95
1221 1256 1.663702 CTTCTGGTTCGCGGTTCGT 60.664 57.895 6.13 0.00 39.67 3.85
1222 1257 1.615107 CTTCTGGTTCGCGGTTCGTC 61.615 60.000 6.13 0.00 39.67 4.20
1223 1258 3.467119 CTGGTTCGCGGTTCGTCG 61.467 66.667 6.13 0.00 39.67 5.12
1224 1259 3.884581 CTGGTTCGCGGTTCGTCGA 62.885 63.158 6.13 0.00 39.67 4.20
1225 1260 2.730604 GGTTCGCGGTTCGTCGAA 60.731 61.111 6.13 2.90 40.55 3.71
1226 1261 2.713894 GGTTCGCGGTTCGTCGAAG 61.714 63.158 8.18 0.00 42.14 3.79
1227 1262 3.101428 TTCGCGGTTCGTCGAAGC 61.101 61.111 23.75 23.75 39.09 3.86
1228 1263 3.827551 TTCGCGGTTCGTCGAAGCA 62.828 57.895 30.10 13.41 39.64 3.91
1229 1264 3.399770 CGCGGTTCGTCGAAGCAA 61.400 61.111 30.10 0.00 39.64 3.91
1230 1265 2.170273 GCGGTTCGTCGAAGCAAC 59.830 61.111 30.10 20.31 39.64 4.17
1231 1266 2.464189 CGGTTCGTCGAAGCAACG 59.536 61.111 30.10 18.34 39.64 4.10
1232 1267 2.170273 GGTTCGTCGAAGCAACGC 59.830 61.111 27.41 7.30 39.49 4.84
1233 1268 2.201885 GTTCGTCGAAGCAACGCG 60.202 61.111 8.18 3.53 39.90 6.01
1234 1269 3.399770 TTCGTCGAAGCAACGCGG 61.400 61.111 12.47 0.00 39.90 6.46
1257 1292 2.654802 GGGGGATAGATTCGCGAGA 58.345 57.895 9.59 0.55 38.15 4.04
1271 1306 3.518590 TCGCGAGAAAAGATTTACTCCC 58.481 45.455 3.71 0.00 37.03 4.30
1272 1307 3.194968 TCGCGAGAAAAGATTTACTCCCT 59.805 43.478 3.71 0.00 37.03 4.20
1273 1308 3.933332 CGCGAGAAAAGATTTACTCCCTT 59.067 43.478 0.00 0.00 0.00 3.95
1274 1309 4.392138 CGCGAGAAAAGATTTACTCCCTTT 59.608 41.667 0.00 0.00 0.00 3.11
1275 1310 5.106673 CGCGAGAAAAGATTTACTCCCTTTT 60.107 40.000 0.00 0.00 41.25 2.27
1276 1311 6.086871 GCGAGAAAAGATTTACTCCCTTTTG 58.913 40.000 0.00 0.00 39.40 2.44
1277 1312 6.294010 GCGAGAAAAGATTTACTCCCTTTTGT 60.294 38.462 0.00 0.00 39.40 2.83
1278 1313 7.649057 CGAGAAAAGATTTACTCCCTTTTGTT 58.351 34.615 0.00 0.00 39.40 2.83
1279 1314 8.135529 CGAGAAAAGATTTACTCCCTTTTGTTT 58.864 33.333 0.00 0.00 39.40 2.83
1280 1315 9.464714 GAGAAAAGATTTACTCCCTTTTGTTTC 57.535 33.333 0.00 0.00 39.40 2.78
1281 1316 8.421784 AGAAAAGATTTACTCCCTTTTGTTTCC 58.578 33.333 0.00 0.00 39.40 3.13
1282 1317 6.665992 AAGATTTACTCCCTTTTGTTTCCC 57.334 37.500 0.00 0.00 0.00 3.97
1283 1318 5.084519 AGATTTACTCCCTTTTGTTTCCCC 58.915 41.667 0.00 0.00 0.00 4.81
1284 1319 4.546224 TTTACTCCCTTTTGTTTCCCCT 57.454 40.909 0.00 0.00 0.00 4.79
1285 1320 4.546224 TTACTCCCTTTTGTTTCCCCTT 57.454 40.909 0.00 0.00 0.00 3.95
1286 1321 3.414759 ACTCCCTTTTGTTTCCCCTTT 57.585 42.857 0.00 0.00 0.00 3.11
1287 1322 3.305720 ACTCCCTTTTGTTTCCCCTTTC 58.694 45.455 0.00 0.00 0.00 2.62
1288 1323 2.632996 CTCCCTTTTGTTTCCCCTTTCC 59.367 50.000 0.00 0.00 0.00 3.13
1298 1642 1.084018 TCCCCTTTCCTGGCAATCTT 58.916 50.000 0.00 0.00 0.00 2.40
1303 1647 1.394917 CTTTCCTGGCAATCTTCGTCG 59.605 52.381 0.00 0.00 0.00 5.12
1345 1691 2.205022 TGAAGAATGTTGGCAGGAGG 57.795 50.000 0.00 0.00 0.00 4.30
1405 1754 2.028748 CCCCCATTTCTTGAAGCAACTG 60.029 50.000 0.00 0.00 0.00 3.16
1471 1820 1.312371 TTAGGTTCGCAATGCCTGGC 61.312 55.000 12.87 12.87 34.07 4.85
1481 2032 2.353579 GCAATGCCTGGCAATCAAATTC 59.646 45.455 27.24 5.47 43.62 2.17
1545 2098 4.335416 TGCTCCCTCACAAAAAGGAATAG 58.665 43.478 0.00 0.00 35.83 1.73
1564 2117 9.280456 AGGAATAGTAGGAGAAAAGACCAAATA 57.720 33.333 0.00 0.00 0.00 1.40
1624 2177 9.730420 GTAATGTGGATGGTGTATTTTTCATAC 57.270 33.333 0.00 0.00 0.00 2.39
1675 2228 1.546029 GAGGTTGGGCTCAATGGAAAC 59.454 52.381 0.27 0.00 35.10 2.78
1698 2251 2.540383 TCCTCTGGAGTTGCATAGTGT 58.460 47.619 0.00 0.00 0.00 3.55
1702 2255 2.027192 TCTGGAGTTGCATAGTGTTCCC 60.027 50.000 0.00 0.00 0.00 3.97
1746 2299 6.299922 AGCCCTGTAGAATAAATTCCTTAGC 58.700 40.000 0.00 0.00 37.51 3.09
1758 2311 4.526438 ATTCCTTAGCAGCATAACCCTT 57.474 40.909 0.00 0.00 0.00 3.95
1791 2344 9.189156 TCATATTAAAGTCCTTGGAATCAAAGG 57.811 33.333 10.20 10.20 31.77 3.11
1814 2367 5.127682 GGCATCCAAGTTATTGTTGAAGGAT 59.872 40.000 0.00 0.00 35.13 3.24
1846 2399 6.151144 ACAGTTCAAACCCATACTTCAATAGC 59.849 38.462 0.00 0.00 0.00 2.97
1852 2405 3.648545 ACCCATACTTCAATAGCTCCTCC 59.351 47.826 0.00 0.00 0.00 4.30
1887 2440 3.125316 GTGGTAAGGAATCAAGTCGCAAG 59.875 47.826 0.00 0.00 0.00 4.01
1982 2535 7.201723 CCAAGCTACAGCATAATTATGTCAACA 60.202 37.037 23.14 7.67 45.16 3.33
1999 2552 3.777522 TCAACAAGAAAAATGGTTGGGGT 59.222 39.130 0.00 0.00 40.64 4.95
2222 2776 6.601332 TCAAACTTGACTTCTCCTTAACCAT 58.399 36.000 0.00 0.00 31.01 3.55
2374 2928 3.165875 CAGACTCCTCTCCTGGTTTGTA 58.834 50.000 0.00 0.00 0.00 2.41
2715 3270 6.256975 GCATGGCAATTGCATTATATGGTATG 59.743 38.462 30.32 16.99 44.36 2.39
2787 3343 1.141053 GGTCAGAGTGGGTGAGTTTGT 59.859 52.381 0.00 0.00 0.00 2.83
2793 3349 2.488153 GAGTGGGTGAGTTTGTATTGCC 59.512 50.000 0.00 0.00 0.00 4.52
2928 3486 4.815533 TCTCAGCTGAGCTAATGTTCTT 57.184 40.909 34.48 0.00 41.80 2.52
3048 3607 4.803613 GGTGTCTGGTTGTTGTTTTGAATC 59.196 41.667 0.00 0.00 0.00 2.52
3101 3660 0.718343 GATCGAGTTGCACTGCTGTC 59.282 55.000 1.98 0.00 0.00 3.51
3338 3897 3.897239 TGATTTCAAGTTCCACAGTGGT 58.103 40.909 19.65 0.00 39.03 4.16
3516 4075 9.305555 AGTACAGTATGACCTAAGAACAAGTTA 57.694 33.333 0.00 0.00 39.69 2.24
3588 4148 9.912634 CATCTTTTTGGCTTAGAAAAATCTGTA 57.087 29.630 0.00 0.00 33.10 2.74
3936 4544 4.438744 GCACCATAGGAATTCCTTGAAACG 60.439 45.833 31.45 16.53 46.09 3.60
3958 4566 9.840427 AAACGAGTTTGAGGAAAATATATTGTG 57.160 29.630 0.00 0.00 0.00 3.33
3980 4589 9.658799 TTGTGTTCCATTTGAAATACTTGAAAA 57.341 25.926 0.00 0.00 33.94 2.29
4013 4622 2.746362 CCCTTCTCACATTTCTCTGTGC 59.254 50.000 0.00 0.00 44.94 4.57
4021 4630 4.823442 TCACATTTCTCTGTGCTTGATTGT 59.177 37.500 0.00 0.00 44.94 2.71
4126 4735 3.051479 TGCATGGTGAGCGCACAG 61.051 61.111 22.36 12.06 46.96 3.66
4319 4928 3.426695 GCATTTGCTGACTACATGGACAC 60.427 47.826 0.00 0.00 38.21 3.67
4492 5101 4.214971 AGTGAGTGTCATTCTTTGCATGTC 59.785 41.667 0.00 0.00 0.00 3.06
4500 5109 8.347771 GTGTCATTCTTTGCATGTCATATGTAT 58.652 33.333 1.90 0.00 0.00 2.29
4501 5110 9.558396 TGTCATTCTTTGCATGTCATATGTATA 57.442 29.630 1.90 0.00 0.00 1.47
4571 5180 1.412079 ATGCTCTTGGTGTTTTGCCA 58.588 45.000 0.00 0.00 0.00 4.92
4628 5237 5.192927 GTGGATGATAATCCTGTGAAACCA 58.807 41.667 10.67 0.00 41.29 3.67
4721 5330 4.019174 AGTCAGGAATTGGTATGGCTTTG 58.981 43.478 0.00 0.00 0.00 2.77
4759 5368 7.532682 TTTTTAAGTTTGCACTGAAATGACC 57.467 32.000 0.00 0.00 33.87 4.02
5021 5632 4.330074 CGGGACATCCAATTATTATCTCGC 59.670 45.833 0.00 0.00 37.91 5.03
5225 5836 5.711976 CCCAGATGATTTTTACAGTCCAGTT 59.288 40.000 0.00 0.00 0.00 3.16
5369 5989 8.521176 CCAAATGACAAGAAAGAAGAATCTGAT 58.479 33.333 0.00 0.00 35.59 2.90
5494 6114 8.686334 TCTTTCTTTGTTCTTAAGCATTCAAGT 58.314 29.630 0.00 0.00 0.00 3.16
5712 6347 9.739276 TTCTAATGATATTGTCACTCCTTTTGT 57.261 29.630 0.00 0.00 40.28 2.83
5850 6485 0.919710 GATAGCCCTCCCACCAGTTT 59.080 55.000 0.00 0.00 0.00 2.66
6066 6750 0.623324 ATCCTGAATCCCGAACCCCA 60.623 55.000 0.00 0.00 0.00 4.96
6067 6751 1.077716 CCTGAATCCCGAACCCCAC 60.078 63.158 0.00 0.00 0.00 4.61
6384 7072 2.675422 AGGGACTTGCCAACAGTGGAT 61.675 52.381 0.00 0.00 42.55 3.41
6395 7083 3.185330 CAACAGTGGATGAGATGACGAG 58.815 50.000 0.00 0.00 0.00 4.18
6432 7120 5.591099 GTGCGGAACCATGATGAATTTATT 58.409 37.500 0.00 0.00 0.00 1.40
6775 7464 3.179443 TCAGGCGAAATCCATGTACTC 57.821 47.619 0.00 0.00 0.00 2.59
6853 7542 5.928839 ACATTAACATCTGCCTATGATCGAC 59.071 40.000 2.63 0.00 0.00 4.20
6870 7559 4.529109 TCGACTGACATGTGGTAAATGA 57.471 40.909 1.15 0.00 0.00 2.57
7140 7831 5.612725 TGATGGTTGTACATGATGCTCTA 57.387 39.130 0.00 0.00 0.00 2.43
7265 7956 0.892814 GCCTTCTGCCTGTTCTTGCT 60.893 55.000 0.00 0.00 0.00 3.91
7323 8014 5.178061 CCTGATAGTAACACAGATGCACAA 58.822 41.667 0.00 0.00 34.07 3.33
7324 8015 5.819379 CCTGATAGTAACACAGATGCACAAT 59.181 40.000 0.00 0.00 34.07 2.71
7325 8016 6.238293 CCTGATAGTAACACAGATGCACAATG 60.238 42.308 0.00 0.00 34.07 2.82
7326 8017 3.837213 AGTAACACAGATGCACAATGC 57.163 42.857 0.00 0.00 45.29 3.56
7328 8019 1.330234 AACACAGATGCACAATGCCA 58.670 45.000 0.00 0.00 44.23 4.92
7329 8020 1.330234 ACACAGATGCACAATGCCAA 58.670 45.000 0.00 0.00 44.23 4.52
7330 8021 1.897133 ACACAGATGCACAATGCCAAT 59.103 42.857 0.00 0.00 44.23 3.16
7331 8022 2.267426 CACAGATGCACAATGCCAATG 58.733 47.619 0.00 0.00 44.23 2.82
7332 8023 1.286501 CAGATGCACAATGCCAATGC 58.713 50.000 0.00 0.00 44.23 3.56
7399 8111 7.395190 TCATCTTATGTTTTTCAGACCCATG 57.605 36.000 0.00 0.00 0.00 3.66
7402 8114 7.921786 TCTTATGTTTTTCAGACCCATGTAG 57.078 36.000 0.00 0.00 0.00 2.74
7474 8191 6.374613 AGGAAAATGGTTAGCTTAGCAGTAAC 59.625 38.462 10.63 7.36 0.00 2.50
7503 8220 5.638234 GTGTCTTCTAATTACGTTTGCCTCT 59.362 40.000 0.00 0.00 0.00 3.69
7628 8345 4.495422 GAGTAGATCTTCAAGCCGAACAA 58.505 43.478 0.00 0.00 0.00 2.83
7662 8379 0.252742 ACTTCACTCGGGGAAGGGAT 60.253 55.000 16.87 0.00 44.69 3.85
7665 8382 0.397254 TCACTCGGGGAAGGGATCTC 60.397 60.000 0.00 0.00 0.00 2.75
7707 8425 3.450578 AGATGCTGCAAAAACTTGTGTG 58.549 40.909 6.36 0.00 0.00 3.82
7730 8448 4.010349 GCTACAAGCCTACCAATGAACTT 58.990 43.478 0.00 0.00 34.48 2.66
7745 8463 0.322816 AACTTGGTGCGAGATGGCAT 60.323 50.000 0.00 0.00 45.99 4.40
7751 8469 1.750018 TGCGAGATGGCATGTTGGG 60.750 57.895 3.81 0.00 38.17 4.12
7763 8481 2.483538 GCATGTTGGGCCCAAACATATC 60.484 50.000 38.70 27.24 37.70 1.63
7789 8507 2.415491 GCCGAAACTGTTGCCCTAAATC 60.415 50.000 0.00 0.00 0.00 2.17
7802 8520 3.696051 GCCCTAAATCAATGAACTGCAGA 59.304 43.478 23.35 0.00 0.00 4.26
7824 8545 7.039923 GCAGACAGTAACATATTACCCTAGCTA 60.040 40.741 0.00 0.00 41.54 3.32
7969 8700 3.403038 CGTTGATGATGTAATCCCTCCC 58.597 50.000 0.00 0.00 44.73 4.30
7971 8702 4.444876 CGTTGATGATGTAATCCCTCCCTT 60.445 45.833 0.00 0.00 44.73 3.95
7974 8705 2.418669 TGATGTAATCCCTCCCTTCCC 58.581 52.381 0.00 0.00 44.73 3.97
7975 8706 2.021042 TGATGTAATCCCTCCCTTCCCT 60.021 50.000 0.00 0.00 44.73 4.20
7976 8707 2.680439 TGTAATCCCTCCCTTCCCTT 57.320 50.000 0.00 0.00 0.00 3.95
7978 8709 2.226039 TGTAATCCCTCCCTTCCCTTCA 60.226 50.000 0.00 0.00 0.00 3.02
7979 8710 2.074922 AATCCCTCCCTTCCCTTCAA 57.925 50.000 0.00 0.00 0.00 2.69
8014 8751 7.889469 AGTTGTTTTCATGCATGTTCTTCTAT 58.111 30.769 25.43 6.01 0.00 1.98
8015 8752 9.013229 AGTTGTTTTCATGCATGTTCTTCTATA 57.987 29.630 25.43 0.46 0.00 1.31
8017 8754 8.565896 TGTTTTCATGCATGTTCTTCTATACT 57.434 30.769 25.43 0.00 0.00 2.12
8019 8756 7.792374 TTTCATGCATGTTCTTCTATACTCC 57.208 36.000 25.43 0.00 0.00 3.85
8022 8759 5.957771 TGCATGTTCTTCTATACTCCCTT 57.042 39.130 0.00 0.00 0.00 3.95
8024 8761 7.432148 TGCATGTTCTTCTATACTCCCTTTA 57.568 36.000 0.00 0.00 0.00 1.85
8026 8763 7.933577 TGCATGTTCTTCTATACTCCCTTTATG 59.066 37.037 0.00 0.00 0.00 1.90
8028 8765 7.432148 TGTTCTTCTATACTCCCTTTATGCA 57.568 36.000 0.00 0.00 0.00 3.96
8029 8766 7.272978 TGTTCTTCTATACTCCCTTTATGCAC 58.727 38.462 0.00 0.00 0.00 4.57
8031 8768 4.866508 TCTATACTCCCTTTATGCACCG 57.133 45.455 0.00 0.00 0.00 4.94
8032 8769 4.476297 TCTATACTCCCTTTATGCACCGA 58.524 43.478 0.00 0.00 0.00 4.69
8033 8770 3.753294 ATACTCCCTTTATGCACCGAG 57.247 47.619 0.00 0.00 0.00 4.63
8034 8771 0.107654 ACTCCCTTTATGCACCGAGC 60.108 55.000 0.00 0.00 45.96 5.03
8052 8794 2.095843 GAATCGTCGCGCCACAAC 59.904 61.111 5.87 0.00 0.00 3.32
8295 9040 1.670811 CTGTTGTCTGTTGTGGTGGTC 59.329 52.381 0.00 0.00 0.00 4.02
8316 9061 4.435231 GTCGTGTAATTGTTTGTTGTTCCG 59.565 41.667 0.00 0.00 0.00 4.30
8336 9081 1.126846 GTGTTGTACATGTGAGCGAGC 59.873 52.381 9.11 0.00 0.00 5.03
8390 9135 3.688049 ATTAGCCCCCATTTTACTGCT 57.312 42.857 0.00 0.00 0.00 4.24
8428 9173 1.303282 GGCGGAGGGAGTGGAAATT 59.697 57.895 0.00 0.00 0.00 1.82
8472 9217 3.997021 CCTGCTAGTTTAGTCCTGTGTTG 59.003 47.826 0.00 0.00 0.00 3.33
8485 9230 1.140852 CTGTGTTGGGTCTGGTCTTCA 59.859 52.381 0.00 0.00 0.00 3.02
8633 9389 4.747108 CCTAGGACTGCTCGTTTGAATATG 59.253 45.833 1.05 0.00 0.00 1.78
8634 9390 2.939103 AGGACTGCTCGTTTGAATATGC 59.061 45.455 0.00 0.00 0.00 3.14
8638 9395 2.288666 TGCTCGTTTGAATATGCCCTC 58.711 47.619 0.00 0.00 0.00 4.30
8658 9415 6.374333 GCCCTCAAAATGTGAACTCATACTTA 59.626 38.462 0.00 0.00 35.22 2.24
8668 9425 6.152831 TGTGAACTCATACTTAGCTGCTAAGA 59.847 38.462 40.93 28.77 44.24 2.10
8676 9433 8.883731 TCATACTTAGCTGCTAAGAAAACAATC 58.116 33.333 40.93 0.00 44.24 2.67
8678 9435 7.371126 ACTTAGCTGCTAAGAAAACAATCTC 57.629 36.000 40.93 0.00 44.24 2.75
8682 9439 4.398247 CTGCTAAGAAAACAATCTCGTGC 58.602 43.478 0.00 0.00 0.00 5.34
8689 9446 5.482908 AGAAAACAATCTCGTGCAGTCTAT 58.517 37.500 0.00 0.00 0.00 1.98
8690 9447 5.349817 AGAAAACAATCTCGTGCAGTCTATG 59.650 40.000 0.00 0.00 0.00 2.23
8702 9459 0.326048 AGTCTATGACCAGCTGCCCT 60.326 55.000 8.66 0.00 32.18 5.19
8703 9460 0.543749 GTCTATGACCAGCTGCCCTT 59.456 55.000 8.66 2.87 0.00 3.95
8704 9461 0.833287 TCTATGACCAGCTGCCCTTC 59.167 55.000 8.66 2.04 0.00 3.46
8705 9462 0.179034 CTATGACCAGCTGCCCTTCC 60.179 60.000 8.66 0.00 0.00 3.46
8706 9463 0.913934 TATGACCAGCTGCCCTTCCA 60.914 55.000 8.66 0.00 0.00 3.53
8707 9464 1.792757 ATGACCAGCTGCCCTTCCAA 61.793 55.000 8.66 0.00 0.00 3.53
8708 9465 1.228552 GACCAGCTGCCCTTCCAAA 60.229 57.895 8.66 0.00 0.00 3.28
8709 9466 0.827507 GACCAGCTGCCCTTCCAAAA 60.828 55.000 8.66 0.00 0.00 2.44
8710 9467 0.398381 ACCAGCTGCCCTTCCAAAAA 60.398 50.000 8.66 0.00 0.00 1.94
8728 9485 1.986882 AAAAAGGTCTGACCAGCTGG 58.013 50.000 31.60 31.60 41.95 4.85
8729 9486 0.538287 AAAAGGTCTGACCAGCTGGC 60.538 55.000 33.06 24.14 41.95 4.85
8730 9487 1.422161 AAAGGTCTGACCAGCTGGCT 61.422 55.000 33.06 19.56 41.95 4.75
8731 9488 2.046507 GGTCTGACCAGCTGGCTG 60.047 66.667 33.06 25.39 43.26 4.85
8732 9489 2.745492 GTCTGACCAGCTGGCTGC 60.745 66.667 33.06 21.66 42.35 5.25
8741 9498 4.471761 GCTGGCTGCTATTCCCTC 57.528 61.111 9.31 0.00 38.95 4.30
8743 9500 1.704007 GCTGGCTGCTATTCCCTCCT 61.704 60.000 9.31 0.00 38.95 3.69
8755 9512 0.693049 TCCCTCCTTTCAACTCAGCC 59.307 55.000 0.00 0.00 0.00 4.85
8760 9517 3.244911 CCTCCTTTCAACTCAGCCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
8812 9625 9.807649 AAAATAATCACAGAAATCTAATGTGCC 57.192 29.630 0.00 0.00 43.16 5.01
8910 9756 2.158460 GGTTAGGCCCCATCTAATGCTT 60.158 50.000 0.00 0.00 0.00 3.91
9002 9848 3.000819 CCCACCTGTCGGCCACTA 61.001 66.667 2.24 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.113383 CCACGTAAACTCATATGTGCCTTA 58.887 41.667 1.90 0.00 40.10 2.69
13 14 4.500127 TCACCCACGTAAACTCATATGTG 58.500 43.478 1.90 2.63 40.77 3.21
14 15 4.464951 TCTCACCCACGTAAACTCATATGT 59.535 41.667 1.90 0.00 0.00 2.29
24 25 4.710324 AGAAAAATGTCTCACCCACGTAA 58.290 39.130 0.00 0.00 0.00 3.18
25 26 4.345859 AGAAAAATGTCTCACCCACGTA 57.654 40.909 0.00 0.00 0.00 3.57
27 28 3.363970 CGAAGAAAAATGTCTCACCCACG 60.364 47.826 0.00 0.00 0.00 4.94
28 29 3.564225 ACGAAGAAAAATGTCTCACCCAC 59.436 43.478 0.00 0.00 0.00 4.61
31 32 5.409826 AGATGACGAAGAAAAATGTCTCACC 59.590 40.000 0.00 0.00 32.64 4.02
41 42 5.943416 AGAGAGAGAGAGATGACGAAGAAAA 59.057 40.000 0.00 0.00 0.00 2.29
42 43 5.496556 AGAGAGAGAGAGATGACGAAGAAA 58.503 41.667 0.00 0.00 0.00 2.52
45 46 4.697514 AGAGAGAGAGAGAGATGACGAAG 58.302 47.826 0.00 0.00 0.00 3.79
50 51 5.462240 AGAGAGAGAGAGAGAGAGAGATGA 58.538 45.833 0.00 0.00 0.00 2.92
62 63 5.106157 GGAAAAGTGAGTGAGAGAGAGAGAG 60.106 48.000 0.00 0.00 0.00 3.20
71 72 5.300752 GTTGAGATGGAAAAGTGAGTGAGA 58.699 41.667 0.00 0.00 0.00 3.27
73 74 4.141505 TGGTTGAGATGGAAAAGTGAGTGA 60.142 41.667 0.00 0.00 0.00 3.41
74 75 4.023707 GTGGTTGAGATGGAAAAGTGAGTG 60.024 45.833 0.00 0.00 0.00 3.51
75 76 4.137543 GTGGTTGAGATGGAAAAGTGAGT 58.862 43.478 0.00 0.00 0.00 3.41
80 81 4.338879 AGGATGTGGTTGAGATGGAAAAG 58.661 43.478 0.00 0.00 0.00 2.27
84 85 2.837947 AGAGGATGTGGTTGAGATGGA 58.162 47.619 0.00 0.00 0.00 3.41
109 110 6.650120 AGAATGGTTACATGGAACGACTTAT 58.350 36.000 14.66 2.80 37.40 1.73
110 111 6.045072 AGAATGGTTACATGGAACGACTTA 57.955 37.500 14.66 0.00 37.40 2.24
112 113 4.553330 AGAATGGTTACATGGAACGACT 57.447 40.909 14.66 0.00 37.40 4.18
114 115 4.223255 TGGTAGAATGGTTACATGGAACGA 59.777 41.667 14.66 11.48 37.40 3.85
116 117 5.531287 GGATGGTAGAATGGTTACATGGAAC 59.469 44.000 12.76 12.76 37.40 3.62
124 125 4.165950 AGCACATGGATGGTAGAATGGTTA 59.834 41.667 0.00 0.00 0.00 2.85
129 130 3.972638 AGAGAGCACATGGATGGTAGAAT 59.027 43.478 0.00 0.00 0.00 2.40
139 140 5.091261 AGGTAGTTAAAGAGAGCACATGG 57.909 43.478 0.00 0.00 0.00 3.66
142 143 6.405953 GCTGATAGGTAGTTAAAGAGAGCACA 60.406 42.308 0.00 0.00 0.00 4.57
145 146 6.150396 TGCTGATAGGTAGTTAAAGAGAGC 57.850 41.667 0.00 0.00 0.00 4.09
156 157 6.219473 CCAGATAGTTGTTGCTGATAGGTAG 58.781 44.000 0.00 0.00 0.00 3.18
157 158 5.070446 CCCAGATAGTTGTTGCTGATAGGTA 59.930 44.000 0.00 0.00 0.00 3.08
160 161 5.282055 TCCCAGATAGTTGTTGCTGATAG 57.718 43.478 0.00 0.00 0.00 2.08
165 166 5.606749 TGGTATATCCCAGATAGTTGTTGCT 59.393 40.000 0.00 0.00 34.77 3.91
168 169 8.045720 ACATTGGTATATCCCAGATAGTTGTT 57.954 34.615 0.00 0.00 35.49 2.83
179 180 5.063880 GGTTCAGTGACATTGGTATATCCC 58.936 45.833 0.00 0.00 34.77 3.85
182 183 7.769044 GTGTTAGGTTCAGTGACATTGGTATAT 59.231 37.037 0.00 0.00 0.00 0.86
183 184 7.101054 GTGTTAGGTTCAGTGACATTGGTATA 58.899 38.462 0.00 0.00 0.00 1.47
186 187 4.134563 GTGTTAGGTTCAGTGACATTGGT 58.865 43.478 0.00 0.00 0.00 3.67
197 198 3.056107 CCTTCGATCAGGTGTTAGGTTCA 60.056 47.826 0.00 0.00 0.00 3.18
201 202 4.585162 AGTATCCTTCGATCAGGTGTTAGG 59.415 45.833 3.11 0.00 35.15 2.69
203 204 7.002276 TGATAGTATCCTTCGATCAGGTGTTA 58.998 38.462 7.69 0.00 35.15 2.41
210 211 3.190744 GCGGTGATAGTATCCTTCGATCA 59.809 47.826 16.04 0.00 0.00 2.92
228 229 0.949105 GATCGGTTGACAGTTGCGGT 60.949 55.000 0.00 0.00 0.00 5.68
253 254 3.108881 CGTGAGATTATGAGACACCACG 58.891 50.000 0.00 0.00 39.74 4.94
254 255 4.371855 TCGTGAGATTATGAGACACCAC 57.628 45.455 0.00 0.00 33.31 4.16
269 270 2.947448 TGTGACATGGAGATCGTGAG 57.053 50.000 0.00 0.00 36.29 3.51
270 271 3.893326 AATGTGACATGGAGATCGTGA 57.107 42.857 0.00 0.00 36.29 4.35
272 273 4.122776 GCTAAATGTGACATGGAGATCGT 58.877 43.478 0.00 0.00 0.00 3.73
273 274 4.122046 TGCTAAATGTGACATGGAGATCG 58.878 43.478 0.00 0.00 0.00 3.69
274 275 5.008415 CCTTGCTAAATGTGACATGGAGATC 59.992 44.000 0.00 0.00 30.89 2.75
276 277 4.263462 ACCTTGCTAAATGTGACATGGAGA 60.263 41.667 0.00 0.00 33.01 3.71
278 279 4.032960 ACCTTGCTAAATGTGACATGGA 57.967 40.909 0.00 0.00 33.01 3.41
279 280 4.943705 ACTACCTTGCTAAATGTGACATGG 59.056 41.667 0.00 0.00 34.44 3.66
280 281 6.593770 TGTACTACCTTGCTAAATGTGACATG 59.406 38.462 0.00 0.00 0.00 3.21
281 282 6.594159 GTGTACTACCTTGCTAAATGTGACAT 59.406 38.462 0.00 0.00 0.00 3.06
282 283 5.929992 GTGTACTACCTTGCTAAATGTGACA 59.070 40.000 0.00 0.00 0.00 3.58
283 284 5.929992 TGTGTACTACCTTGCTAAATGTGAC 59.070 40.000 0.00 0.00 0.00 3.67
284 285 6.104146 TGTGTACTACCTTGCTAAATGTGA 57.896 37.500 0.00 0.00 0.00 3.58
285 286 6.593770 TCATGTGTACTACCTTGCTAAATGTG 59.406 38.462 0.00 0.00 0.00 3.21
286 287 6.707290 TCATGTGTACTACCTTGCTAAATGT 58.293 36.000 0.00 0.00 0.00 2.71
287 288 7.495606 TGATCATGTGTACTACCTTGCTAAATG 59.504 37.037 0.00 0.00 0.00 2.32
288 289 7.564793 TGATCATGTGTACTACCTTGCTAAAT 58.435 34.615 0.00 0.00 0.00 1.40
289 290 6.941857 TGATCATGTGTACTACCTTGCTAAA 58.058 36.000 0.00 0.00 0.00 1.85
290 291 6.538945 TGATCATGTGTACTACCTTGCTAA 57.461 37.500 0.00 0.00 0.00 3.09
291 292 6.071051 TGTTGATCATGTGTACTACCTTGCTA 60.071 38.462 0.00 0.00 0.00 3.49
292 293 5.178797 GTTGATCATGTGTACTACCTTGCT 58.821 41.667 0.00 0.00 0.00 3.91
293 294 4.935205 TGTTGATCATGTGTACTACCTTGC 59.065 41.667 0.00 0.00 0.00 4.01
294 295 7.615582 AATGTTGATCATGTGTACTACCTTG 57.384 36.000 0.00 0.00 36.81 3.61
295 296 7.882791 TGAAATGTTGATCATGTGTACTACCTT 59.117 33.333 0.00 0.00 36.81 3.50
296 297 7.334421 GTGAAATGTTGATCATGTGTACTACCT 59.666 37.037 0.00 0.00 36.81 3.08
297 298 7.414098 GGTGAAATGTTGATCATGTGTACTACC 60.414 40.741 0.00 0.00 36.81 3.18
298 299 7.119116 TGGTGAAATGTTGATCATGTGTACTAC 59.881 37.037 0.00 0.00 36.81 2.73
299 300 7.164803 TGGTGAAATGTTGATCATGTGTACTA 58.835 34.615 0.00 0.00 36.81 1.82
300 301 6.003326 TGGTGAAATGTTGATCATGTGTACT 58.997 36.000 0.00 0.00 36.81 2.73
301 302 6.252967 TGGTGAAATGTTGATCATGTGTAC 57.747 37.500 0.00 0.00 36.81 2.90
302 303 6.890979 TTGGTGAAATGTTGATCATGTGTA 57.109 33.333 0.00 0.00 36.81 2.90
359 360 0.304705 CGTGCATTTGCCCTATCGTC 59.695 55.000 0.00 0.00 41.18 4.20
362 363 1.331756 CACTCGTGCATTTGCCCTATC 59.668 52.381 0.00 0.00 41.18 2.08
363 364 1.382522 CACTCGTGCATTTGCCCTAT 58.617 50.000 0.00 0.00 41.18 2.57
364 365 2.853159 CACTCGTGCATTTGCCCTA 58.147 52.632 0.00 0.00 41.18 3.53
365 366 3.672293 CACTCGTGCATTTGCCCT 58.328 55.556 0.00 0.00 41.18 5.19
375 376 0.778815 GTCTTCGACTTGCACTCGTG 59.221 55.000 11.67 7.34 32.77 4.35
376 377 0.660595 CGTCTTCGACTTGCACTCGT 60.661 55.000 11.67 0.00 39.71 4.18
377 378 0.385598 TCGTCTTCGACTTGCACTCG 60.386 55.000 6.63 6.63 41.35 4.18
378 379 3.474007 TCGTCTTCGACTTGCACTC 57.526 52.632 0.00 0.00 41.35 3.51
418 419 5.063944 CACGACACTTATTTTGGATCAGAGG 59.936 44.000 0.00 0.00 0.00 3.69
419 420 5.063944 CCACGACACTTATTTTGGATCAGAG 59.936 44.000 0.00 0.00 0.00 3.35
420 421 4.935205 CCACGACACTTATTTTGGATCAGA 59.065 41.667 0.00 0.00 0.00 3.27
421 422 4.695455 ACCACGACACTTATTTTGGATCAG 59.305 41.667 0.00 0.00 0.00 2.90
426 427 6.731164 ACTAAAACCACGACACTTATTTTGG 58.269 36.000 0.00 0.00 0.00 3.28
455 456 1.824852 TCACAGCGATCCAGCTTTCTA 59.175 47.619 0.00 0.00 46.80 2.10
456 457 0.610174 TCACAGCGATCCAGCTTTCT 59.390 50.000 0.00 0.00 46.80 2.52
457 458 1.005340 CTCACAGCGATCCAGCTTTC 58.995 55.000 0.00 0.00 46.80 2.62
468 469 4.448891 CGCATTATTCAATACTCACAGCG 58.551 43.478 0.00 0.00 0.00 5.18
470 471 5.408204 TGCGCATTATTCAATACTCACAG 57.592 39.130 5.66 0.00 0.00 3.66
471 472 5.123027 TGTTGCGCATTATTCAATACTCACA 59.877 36.000 12.75 3.99 0.00 3.58
533 535 3.424433 CGAATAAAAACCTCTCGTGCACC 60.424 47.826 12.15 0.00 0.00 5.01
539 541 6.656003 AGTTCAAACGAATAAAAACCTCTCG 58.344 36.000 0.00 0.00 35.68 4.04
598 600 0.109873 TCCTCTTCTCGCGTTCGTTC 60.110 55.000 5.77 0.00 36.96 3.95
697 701 0.539518 GTCCTTTCTCTCTCCTGGGC 59.460 60.000 0.00 0.00 0.00 5.36
771 778 1.956620 GCAGTCGCGGCAGTAAGAAC 61.957 60.000 15.58 0.00 0.00 3.01
772 779 1.736645 GCAGTCGCGGCAGTAAGAA 60.737 57.895 15.58 0.00 0.00 2.52
773 780 2.126071 GCAGTCGCGGCAGTAAGA 60.126 61.111 15.58 0.00 0.00 2.10
843 868 3.732849 GTGGAGGGGGCAGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
844 869 0.988145 TATGTGGAGGGGGCAGAAGG 60.988 60.000 0.00 0.00 0.00 3.46
845 870 0.181350 GTATGTGGAGGGGGCAGAAG 59.819 60.000 0.00 0.00 0.00 2.85
846 871 1.279025 GGTATGTGGAGGGGGCAGAA 61.279 60.000 0.00 0.00 0.00 3.02
847 872 1.692749 GGTATGTGGAGGGGGCAGA 60.693 63.158 0.00 0.00 0.00 4.26
848 873 2.000701 TGGTATGTGGAGGGGGCAG 61.001 63.158 0.00 0.00 0.00 4.85
849 874 2.126142 TGGTATGTGGAGGGGGCA 59.874 61.111 0.00 0.00 0.00 5.36
880 905 4.148825 CGGGAGCGGGGTTGAGAG 62.149 72.222 0.00 0.00 0.00 3.20
1084 1116 4.151689 CGTGAGCTAAATCGAACCAAGAAA 59.848 41.667 0.00 0.00 0.00 2.52
1114 1146 2.298729 GCTTGAAGAGACAGTCACCTCT 59.701 50.000 2.66 0.00 41.17 3.69
1117 1149 2.533266 TGCTTGAAGAGACAGTCACC 57.467 50.000 2.66 0.00 0.00 4.02
1119 1154 3.668447 GGATTGCTTGAAGAGACAGTCA 58.332 45.455 2.66 0.00 0.00 3.41
1120 1155 2.670414 CGGATTGCTTGAAGAGACAGTC 59.330 50.000 0.00 0.00 0.00 3.51
1132 1167 0.258774 AATGCCTACCCGGATTGCTT 59.741 50.000 0.73 0.00 33.16 3.91
1135 1170 0.385390 GCAAATGCCTACCCGGATTG 59.615 55.000 0.73 0.00 34.31 2.67
1160 1195 2.028930 GGAATATCAATCTCCGTCCGCT 60.029 50.000 0.00 0.00 0.00 5.52
1188 1223 4.451900 ACCAGAAGAGAACACACGAATTT 58.548 39.130 0.00 0.00 0.00 1.82
1197 1232 0.319555 CCGCGAACCAGAAGAGAACA 60.320 55.000 8.23 0.00 0.00 3.18
1198 1233 0.319641 ACCGCGAACCAGAAGAGAAC 60.320 55.000 8.23 0.00 0.00 3.01
1199 1234 0.391597 AACCGCGAACCAGAAGAGAA 59.608 50.000 8.23 0.00 0.00 2.87
1200 1235 0.038526 GAACCGCGAACCAGAAGAGA 60.039 55.000 8.23 0.00 0.00 3.10
1201 1236 1.344942 CGAACCGCGAACCAGAAGAG 61.345 60.000 8.23 0.00 44.57 2.85
1202 1237 1.372499 CGAACCGCGAACCAGAAGA 60.372 57.895 8.23 0.00 44.57 2.87
1203 1238 1.615107 GACGAACCGCGAACCAGAAG 61.615 60.000 8.23 0.00 44.57 2.85
1204 1239 1.662446 GACGAACCGCGAACCAGAA 60.662 57.895 8.23 0.00 44.57 3.02
1205 1240 2.049802 GACGAACCGCGAACCAGA 60.050 61.111 8.23 0.00 44.57 3.86
1206 1241 3.467119 CGACGAACCGCGAACCAG 61.467 66.667 8.23 0.00 44.57 4.00
1207 1242 3.481729 TTCGACGAACCGCGAACCA 62.482 57.895 8.23 0.00 44.57 3.67
1208 1243 2.713894 CTTCGACGAACCGCGAACC 61.714 63.158 8.23 0.00 44.57 3.62
1209 1244 2.761354 CTTCGACGAACCGCGAAC 59.239 61.111 8.23 0.00 44.57 3.95
1210 1245 3.101428 GCTTCGACGAACCGCGAA 61.101 61.111 8.23 14.05 44.57 4.70
1211 1246 3.827551 TTGCTTCGACGAACCGCGA 62.828 57.895 8.23 6.92 44.57 5.87
1213 1248 2.170273 GTTGCTTCGACGAACCGC 59.830 61.111 6.10 10.40 0.00 5.68
1214 1249 2.464189 CGTTGCTTCGACGAACCG 59.536 61.111 6.10 0.00 43.17 4.44
1215 1250 2.170273 GCGTTGCTTCGACGAACC 59.830 61.111 6.10 0.45 43.17 3.62
1216 1251 2.201885 CGCGTTGCTTCGACGAAC 60.202 61.111 6.10 4.83 43.17 3.95
1217 1252 3.399770 CCGCGTTGCTTCGACGAA 61.400 61.111 10.34 10.34 43.17 3.85
1239 1274 0.966920 TTCTCGCGAATCTATCCCCC 59.033 55.000 11.33 0.00 0.00 5.40
1240 1275 2.814280 TTTCTCGCGAATCTATCCCC 57.186 50.000 11.33 0.00 0.00 4.81
1241 1276 3.978687 TCTTTTCTCGCGAATCTATCCC 58.021 45.455 11.33 0.00 0.00 3.85
1242 1277 6.532365 AAATCTTTTCTCGCGAATCTATCC 57.468 37.500 11.33 0.00 0.00 2.59
1243 1278 8.288217 AGTAAATCTTTTCTCGCGAATCTATC 57.712 34.615 11.33 0.00 0.00 2.08
1244 1279 7.382759 GGAGTAAATCTTTTCTCGCGAATCTAT 59.617 37.037 11.33 0.00 36.00 1.98
1245 1280 6.696148 GGAGTAAATCTTTTCTCGCGAATCTA 59.304 38.462 11.33 0.00 36.00 1.98
1246 1281 5.520649 GGAGTAAATCTTTTCTCGCGAATCT 59.479 40.000 11.33 0.00 36.00 2.40
1247 1282 5.276915 GGGAGTAAATCTTTTCTCGCGAATC 60.277 44.000 11.33 0.00 37.61 2.52
1248 1283 4.571176 GGGAGTAAATCTTTTCTCGCGAAT 59.429 41.667 11.33 0.00 37.61 3.34
1249 1284 3.930848 GGGAGTAAATCTTTTCTCGCGAA 59.069 43.478 11.33 0.00 37.61 4.70
1250 1285 3.194968 AGGGAGTAAATCTTTTCTCGCGA 59.805 43.478 9.26 9.26 45.50 5.87
1251 1286 3.522553 AGGGAGTAAATCTTTTCTCGCG 58.477 45.455 15.54 0.00 45.50 5.87
1252 1287 5.881777 AAAGGGAGTAAATCTTTTCTCGC 57.118 39.130 14.42 14.42 43.17 5.03
1253 1288 7.203255 ACAAAAGGGAGTAAATCTTTTCTCG 57.797 36.000 0.00 0.00 38.27 4.04
1254 1289 9.464714 GAAACAAAAGGGAGTAAATCTTTTCTC 57.535 33.333 0.00 1.85 38.27 2.87
1255 1290 8.421784 GGAAACAAAAGGGAGTAAATCTTTTCT 58.578 33.333 0.00 0.00 38.27 2.52
1256 1291 7.656137 GGGAAACAAAAGGGAGTAAATCTTTTC 59.344 37.037 0.00 0.00 38.27 2.29
1257 1292 7.419750 GGGGAAACAAAAGGGAGTAAATCTTTT 60.420 37.037 0.00 0.00 40.16 2.27
1258 1293 6.042781 GGGGAAACAAAAGGGAGTAAATCTTT 59.957 38.462 0.00 0.00 32.77 2.52
1259 1294 5.542635 GGGGAAACAAAAGGGAGTAAATCTT 59.457 40.000 0.00 0.00 0.00 2.40
1260 1295 5.084519 GGGGAAACAAAAGGGAGTAAATCT 58.915 41.667 0.00 0.00 0.00 2.40
1261 1296 5.084519 AGGGGAAACAAAAGGGAGTAAATC 58.915 41.667 0.00 0.00 0.00 2.17
1262 1297 5.087923 AGGGGAAACAAAAGGGAGTAAAT 57.912 39.130 0.00 0.00 0.00 1.40
1263 1298 4.546224 AGGGGAAACAAAAGGGAGTAAA 57.454 40.909 0.00 0.00 0.00 2.01
1264 1299 4.546224 AAGGGGAAACAAAAGGGAGTAA 57.454 40.909 0.00 0.00 0.00 2.24
1265 1300 4.476297 GAAAGGGGAAACAAAAGGGAGTA 58.524 43.478 0.00 0.00 0.00 2.59
1266 1301 3.305720 GAAAGGGGAAACAAAAGGGAGT 58.694 45.455 0.00 0.00 0.00 3.85
1267 1302 2.632996 GGAAAGGGGAAACAAAAGGGAG 59.367 50.000 0.00 0.00 0.00 4.30
1268 1303 2.248950 AGGAAAGGGGAAACAAAAGGGA 59.751 45.455 0.00 0.00 0.00 4.20
1269 1304 2.368548 CAGGAAAGGGGAAACAAAAGGG 59.631 50.000 0.00 0.00 0.00 3.95
1270 1305 2.368548 CCAGGAAAGGGGAAACAAAAGG 59.631 50.000 0.00 0.00 0.00 3.11
1271 1306 2.224281 GCCAGGAAAGGGGAAACAAAAG 60.224 50.000 0.00 0.00 0.00 2.27
1272 1307 1.765904 GCCAGGAAAGGGGAAACAAAA 59.234 47.619 0.00 0.00 0.00 2.44
1273 1308 1.343478 TGCCAGGAAAGGGGAAACAAA 60.343 47.619 0.00 0.00 0.00 2.83
1274 1309 0.263172 TGCCAGGAAAGGGGAAACAA 59.737 50.000 0.00 0.00 0.00 2.83
1275 1310 0.263172 TTGCCAGGAAAGGGGAAACA 59.737 50.000 0.00 0.00 32.40 2.83
1276 1311 1.550524 GATTGCCAGGAAAGGGGAAAC 59.449 52.381 0.00 0.00 39.28 2.78
1277 1312 1.432807 AGATTGCCAGGAAAGGGGAAA 59.567 47.619 0.00 0.00 39.28 3.13
1278 1313 1.084018 AGATTGCCAGGAAAGGGGAA 58.916 50.000 0.00 0.00 40.17 3.97
1279 1314 1.005924 GAAGATTGCCAGGAAAGGGGA 59.994 52.381 0.00 0.00 0.00 4.81
1280 1315 1.478631 GAAGATTGCCAGGAAAGGGG 58.521 55.000 0.00 0.00 0.00 4.79
1281 1316 1.098050 CGAAGATTGCCAGGAAAGGG 58.902 55.000 0.00 0.00 0.00 3.95
1282 1317 1.740025 GACGAAGATTGCCAGGAAAGG 59.260 52.381 0.00 0.00 0.00 3.11
1283 1318 1.394917 CGACGAAGATTGCCAGGAAAG 59.605 52.381 0.00 0.00 0.00 2.62
1284 1319 1.001520 TCGACGAAGATTGCCAGGAAA 59.998 47.619 0.00 0.00 0.00 3.13
1285 1320 0.606096 TCGACGAAGATTGCCAGGAA 59.394 50.000 0.00 0.00 0.00 3.36
1286 1321 0.108804 GTCGACGAAGATTGCCAGGA 60.109 55.000 0.00 0.00 0.00 3.86
1287 1322 1.413767 CGTCGACGAAGATTGCCAGG 61.414 60.000 33.35 0.00 43.02 4.45
1288 1323 0.456142 TCGTCGACGAAGATTGCCAG 60.456 55.000 36.25 5.24 46.30 4.85
1303 1647 0.942884 AAGAAACGGCGGTCTTCGTC 60.943 55.000 18.68 4.01 41.72 4.20
1345 1691 0.532115 AATCAACGGATTTGGCAGCC 59.468 50.000 3.66 3.66 40.87 4.85
1405 1754 4.151798 CAACGCTCAAGTTTTAGCTTAGC 58.848 43.478 0.00 0.00 36.56 3.09
1416 1765 1.510480 GGAAGCTGCAACGCTCAAGT 61.510 55.000 1.02 0.00 39.86 3.16
1500 2051 5.402054 TTTGGGATCCCATTAGCAATAGT 57.598 39.130 34.21 0.00 46.64 2.12
1506 2057 2.560105 GAGCATTTGGGATCCCATTAGC 59.440 50.000 34.21 31.75 46.64 3.09
1545 2098 7.117956 GTGTCAGTATTTGGTCTTTTCTCCTAC 59.882 40.741 0.00 0.00 0.00 3.18
1564 2117 3.195610 TGAATCATCCTAAGCGTGTCAGT 59.804 43.478 0.00 0.00 0.00 3.41
1624 2177 7.809806 GGAATTTTCCTTTGTGTCTATGACAAG 59.190 37.037 1.73 0.00 42.99 3.16
1656 2209 1.147817 AGTTTCCATTGAGCCCAACCT 59.852 47.619 0.00 0.00 34.72 3.50
1675 2228 3.937706 CACTATGCAACTCCAGAGGAAAG 59.062 47.826 0.00 0.00 0.00 2.62
1698 2251 7.392393 GCTTACATAACAACTTTTCCTAGGGAA 59.608 37.037 9.46 2.79 40.27 3.97
1702 2255 6.884836 AGGGCTTACATAACAACTTTTCCTAG 59.115 38.462 0.00 0.00 0.00 3.02
1791 2344 5.643379 TCCTTCAACAATAACTTGGATGC 57.357 39.130 0.00 0.00 36.64 3.91
1814 2367 6.068010 AGTATGGGTTTGAACTGTTCATTGA 58.932 36.000 22.60 6.68 39.84 2.57
1846 2399 3.189287 CCACAAAATTTCGTCTGGAGGAG 59.811 47.826 0.00 0.00 0.00 3.69
1852 2405 5.682943 TCCTTACCACAAAATTTCGTCTG 57.317 39.130 0.00 0.00 0.00 3.51
1982 2535 5.645056 AATCAACCCCAACCATTTTTCTT 57.355 34.783 0.00 0.00 0.00 2.52
1999 2552 4.151883 AGGTAAGCTGAAAGGCAAATCAA 58.848 39.130 0.00 0.00 34.17 2.57
2090 2644 3.323243 ACACGACATACAAGTGCCTTAC 58.677 45.455 0.00 0.00 39.31 2.34
2101 2655 6.422776 AAATCATCCTTTGACACGACATAC 57.577 37.500 0.00 0.00 37.11 2.39
2374 2928 5.830799 TCATGCTCATAATGTCATAGGGT 57.169 39.130 0.00 0.00 0.00 4.34
2767 3323 1.141053 ACAAACTCACCCACTCTGACC 59.859 52.381 0.00 0.00 0.00 4.02
2793 3349 5.403766 GTCAAGATTCATATACAGGCACTCG 59.596 44.000 0.00 0.00 34.60 4.18
2928 3486 5.027293 TCTTATGCTTTCAGCTGCTATCA 57.973 39.130 9.47 4.94 42.97 2.15
2950 3508 5.650283 TGAAAACACCCTCCCAAAAGATAT 58.350 37.500 0.00 0.00 0.00 1.63
2951 3509 5.068215 TGAAAACACCCTCCCAAAAGATA 57.932 39.130 0.00 0.00 0.00 1.98
2979 3537 5.542779 ACAGTCTACCAAGAAAAGCACTAG 58.457 41.667 0.00 0.00 32.16 2.57
2988 3546 7.241042 AGCATAGTTTACAGTCTACCAAGAA 57.759 36.000 0.00 0.00 32.16 2.52
3048 3607 0.725784 GACCGCACAACTGCATTTCG 60.726 55.000 0.00 0.00 44.50 3.46
3338 3897 5.963594 TGAAAATCAATGCATCGGATTTGA 58.036 33.333 26.85 16.74 40.17 2.69
3516 4075 6.983906 AAAATTGGATTCCTCAGACACTTT 57.016 33.333 3.95 0.00 0.00 2.66
3936 4544 9.788960 GGAACACAATATATTTTCCTCAAACTC 57.211 33.333 15.72 0.00 34.11 3.01
3980 4589 1.918262 TGAGAAGGGGCATCATCAACT 59.082 47.619 0.00 0.00 0.00 3.16
4021 4630 9.598517 AAAAGCATCACTGAAAATAACTCAAAA 57.401 25.926 0.00 0.00 0.00 2.44
4628 5237 1.273327 GGCTTTGCAGTGCTACCATTT 59.727 47.619 17.60 0.00 0.00 2.32
5021 5632 6.064060 TGAAGAATTAATAGCCATCCCTGTG 58.936 40.000 0.00 0.00 0.00 3.66
5225 5836 6.477688 CACTAGGTAAACGTTTTCTCAAGTGA 59.522 38.462 24.97 6.16 33.09 3.41
5369 5989 9.042450 TGTCTAATTTCTCCTTTATCAGTACCA 57.958 33.333 0.00 0.00 0.00 3.25
5712 6347 0.970640 TCCTAACGGCACAGCAACTA 59.029 50.000 0.00 0.00 0.00 2.24
5850 6485 7.283625 ACAGTAAAAACATGAAAGCATACCA 57.716 32.000 0.00 0.00 32.27 3.25
6003 6687 7.607607 TGCACAGACAAAGTATGAATGAGTTAT 59.392 33.333 0.00 0.00 0.00 1.89
6066 6750 6.875972 ACTTGTATCTCCAAATGACTAGGT 57.124 37.500 0.00 0.00 0.00 3.08
6067 6751 9.265901 CATTACTTGTATCTCCAAATGACTAGG 57.734 37.037 0.00 0.00 0.00 3.02
6285 6969 6.108015 AGTTGAACAGCAAAATCACAAACAT 58.892 32.000 0.00 0.00 38.44 2.71
6384 7072 2.365582 TCGATTGGACTCGTCATCTCA 58.634 47.619 0.00 0.00 39.62 3.27
6432 7120 7.731882 TGTCAACCGAGATTTTACAACATTA 57.268 32.000 0.00 0.00 0.00 1.90
6775 7464 0.740737 GCCAATTTCCCACATCTCCG 59.259 55.000 0.00 0.00 0.00 4.63
6853 7542 5.241506 ACAACCTTCATTTACCACATGTCAG 59.758 40.000 0.00 0.00 0.00 3.51
6960 7649 5.424757 ACACTTTACAAGAACACACTAGCA 58.575 37.500 0.00 0.00 0.00 3.49
7265 7956 3.380004 CAGTTTTGCTGTTCAGTAACCCA 59.620 43.478 3.07 0.00 40.27 4.51
7295 7986 6.071051 TGCATCTGTGTTACTATCAGGTGTAA 60.071 38.462 13.54 0.00 40.92 2.41
7296 7987 5.420739 TGCATCTGTGTTACTATCAGGTGTA 59.579 40.000 13.54 9.00 40.92 2.90
7325 8016 6.149973 TGCAAGAAGATATAGTATGCATTGGC 59.850 38.462 3.54 0.00 37.40 4.52
7326 8017 7.677454 TGCAAGAAGATATAGTATGCATTGG 57.323 36.000 3.54 0.00 37.40 3.16
7329 8020 9.736414 AGATTTGCAAGAAGATATAGTATGCAT 57.264 29.630 3.79 3.79 41.38 3.96
7330 8021 8.996271 CAGATTTGCAAGAAGATATAGTATGCA 58.004 33.333 0.00 0.00 40.22 3.96
7331 8022 8.997323 ACAGATTTGCAAGAAGATATAGTATGC 58.003 33.333 0.00 0.00 0.00 3.14
7399 8111 8.607441 TCATTCACATATTGCAGGATAACTAC 57.393 34.615 0.00 0.00 0.00 2.73
7402 8114 7.327761 GCATTCATTCACATATTGCAGGATAAC 59.672 37.037 0.00 0.00 0.00 1.89
7454 8171 8.047310 ACAATAGTTACTGCTAAGCTAACCATT 58.953 33.333 0.00 0.00 0.00 3.16
7463 8180 9.856488 TTAGAAGACACAATAGTTACTGCTAAG 57.144 33.333 0.00 0.00 31.02 2.18
7474 8191 7.903431 GGCAAACGTAATTAGAAGACACAATAG 59.097 37.037 0.00 0.00 0.00 1.73
7628 8345 3.584848 AGTGAAGTTGGAGAGCATACCTT 59.415 43.478 0.00 0.00 0.00 3.50
7662 8379 6.004574 TCTCTTACTCTTAGCAACACTGAGA 58.995 40.000 0.00 0.00 38.62 3.27
7665 8382 6.260870 TCTCTCTTACTCTTAGCAACACTG 57.739 41.667 0.00 0.00 0.00 3.66
7730 8448 1.002257 AACATGCCATCTCGCACCA 60.002 52.632 0.00 0.00 42.70 4.17
7745 8463 2.917713 AGATATGTTTGGGCCCAACA 57.082 45.000 37.33 32.78 35.46 3.33
7751 8469 2.165437 TCGGCAAAAGATATGTTTGGGC 59.835 45.455 14.42 14.42 36.64 5.36
7755 8473 6.084326 ACAGTTTCGGCAAAAGATATGTTT 57.916 33.333 0.00 0.00 0.00 2.83
7763 8481 1.208259 GGCAACAGTTTCGGCAAAAG 58.792 50.000 0.00 0.00 0.00 2.27
7802 8520 7.778185 CCTAGCTAGGGTAATATGTTACTGT 57.222 40.000 29.47 3.11 40.06 3.55
7824 8545 8.692682 ATATCTCTAAAGAATATGAAGGCCCT 57.307 34.615 0.00 0.00 34.49 5.19
7852 8581 3.181427 ACAAATTGGTTACTGCCCTGGTA 60.181 43.478 0.00 0.00 0.00 3.25
7969 8700 5.986501 ACTAGTAGAGTGTTGAAGGGAAG 57.013 43.478 3.59 0.00 36.87 3.46
7971 8702 5.145564 ACAACTAGTAGAGTGTTGAAGGGA 58.854 41.667 3.59 0.00 42.35 4.20
7974 8705 8.420374 TGAAAACAACTAGTAGAGTGTTGAAG 57.580 34.615 18.41 0.00 42.35 3.02
7975 8706 8.826710 CATGAAAACAACTAGTAGAGTGTTGAA 58.173 33.333 18.41 11.14 42.35 2.69
7976 8707 7.042051 GCATGAAAACAACTAGTAGAGTGTTGA 60.042 37.037 18.41 7.87 42.35 3.18
7978 8709 6.765989 TGCATGAAAACAACTAGTAGAGTGTT 59.234 34.615 14.38 14.38 38.87 3.32
7979 8710 6.288294 TGCATGAAAACAACTAGTAGAGTGT 58.712 36.000 3.59 4.89 38.87 3.55
8014 8751 1.138266 GCTCGGTGCATAAAGGGAGTA 59.862 52.381 0.00 0.00 42.31 2.59
8015 8752 0.107654 GCTCGGTGCATAAAGGGAGT 60.108 55.000 0.00 0.00 42.31 3.85
8017 8754 1.153449 CGCTCGGTGCATAAAGGGA 60.153 57.895 2.75 0.00 43.06 4.20
8019 8756 1.261619 GATTCGCTCGGTGCATAAAGG 59.738 52.381 2.75 0.00 43.06 3.11
8022 8759 2.588731 CGATTCGCTCGGTGCATAA 58.411 52.632 2.75 0.00 43.82 1.90
8035 8772 2.095843 GTTGTGGCGCGACGATTC 59.904 61.111 15.96 0.08 0.00 2.52
8047 8789 0.579630 TACGCTTGTTGCTCGTTGTG 59.420 50.000 0.00 0.00 40.11 3.33
8050 8792 1.726791 CAGATACGCTTGTTGCTCGTT 59.273 47.619 0.00 0.00 40.11 3.85
8052 8794 1.321743 GTCAGATACGCTTGTTGCTCG 59.678 52.381 0.00 0.00 40.11 5.03
8281 9026 1.112950 TACACGACCACCACAACAGA 58.887 50.000 0.00 0.00 0.00 3.41
8295 9040 4.203361 CACGGAACAACAAACAATTACACG 59.797 41.667 0.00 0.00 0.00 4.49
8316 9061 1.126846 GCTCGCTCACATGTACAACAC 59.873 52.381 0.00 0.00 0.00 3.32
8336 9081 2.581953 GCCAAGCTCTCTCGCTCG 60.582 66.667 0.00 0.00 39.86 5.03
8411 9156 2.413310 TTAATTTCCACTCCCTCCGC 57.587 50.000 0.00 0.00 0.00 5.54
8425 9170 7.065683 GGCGTTTTTCCCATTCATTCATTAATT 59.934 33.333 0.00 0.00 0.00 1.40
8428 9173 5.186797 AGGCGTTTTTCCCATTCATTCATTA 59.813 36.000 0.00 0.00 0.00 1.90
8472 9217 3.503748 CACAGAAAATGAAGACCAGACCC 59.496 47.826 0.00 0.00 0.00 4.46
8485 9230 2.223711 GCGAACCAACACCACAGAAAAT 60.224 45.455 0.00 0.00 0.00 1.82
8526 9271 6.261826 AGAGATGGTTGTCTTCAAAACTTCTG 59.738 38.462 0.00 0.00 35.20 3.02
8633 9389 4.702131 AGTATGAGTTCACATTTTGAGGGC 59.298 41.667 0.00 0.00 34.94 5.19
8634 9390 6.824305 AAGTATGAGTTCACATTTTGAGGG 57.176 37.500 0.00 0.00 34.94 4.30
8638 9395 6.744537 GCAGCTAAGTATGAGTTCACATTTTG 59.255 38.462 0.00 0.00 0.00 2.44
8658 9415 4.153117 CACGAGATTGTTTTCTTAGCAGCT 59.847 41.667 0.00 0.00 0.00 4.24
8668 9425 5.120830 GTCATAGACTGCACGAGATTGTTTT 59.879 40.000 0.00 0.00 0.00 2.43
8676 9433 1.800655 GCTGGTCATAGACTGCACGAG 60.801 57.143 0.00 0.00 34.40 4.18
8678 9435 0.174389 AGCTGGTCATAGACTGCACG 59.826 55.000 14.20 0.00 35.70 5.34
8682 9439 0.179062 GGGCAGCTGGTCATAGACTG 60.179 60.000 17.12 0.00 32.47 3.51
8689 9446 2.005606 TTTGGAAGGGCAGCTGGTCA 62.006 55.000 17.12 0.00 0.00 4.02
8690 9447 0.827507 TTTTGGAAGGGCAGCTGGTC 60.828 55.000 17.12 0.00 0.00 4.02
8709 9466 1.986882 CCAGCTGGTCAGACCTTTTT 58.013 50.000 25.53 1.17 39.58 1.94
8710 9467 0.538287 GCCAGCTGGTCAGACCTTTT 60.538 55.000 32.81 2.97 39.58 2.27
8711 9468 1.073897 GCCAGCTGGTCAGACCTTT 59.926 57.895 32.81 3.33 39.58 3.11
8712 9469 1.845205 AGCCAGCTGGTCAGACCTT 60.845 57.895 32.81 6.58 39.58 3.50
8713 9470 2.203907 AGCCAGCTGGTCAGACCT 60.204 61.111 32.81 17.80 39.58 3.85
8714 9471 2.046507 CAGCCAGCTGGTCAGACC 60.047 66.667 32.81 13.35 40.17 3.85
8715 9472 2.745492 GCAGCCAGCTGGTCAGAC 60.745 66.667 32.81 16.47 43.77 3.51
8724 9481 1.228094 GGAGGGAATAGCAGCCAGC 60.228 63.158 0.00 0.00 46.19 4.85
8725 9482 0.842635 AAGGAGGGAATAGCAGCCAG 59.157 55.000 0.00 0.00 0.00 4.85
8726 9483 1.212935 GAAAGGAGGGAATAGCAGCCA 59.787 52.381 0.00 0.00 0.00 4.75
8727 9484 1.212935 TGAAAGGAGGGAATAGCAGCC 59.787 52.381 0.00 0.00 0.00 4.85
8728 9485 2.685388 GTTGAAAGGAGGGAATAGCAGC 59.315 50.000 0.00 0.00 0.00 5.25
8729 9486 4.195416 GAGTTGAAAGGAGGGAATAGCAG 58.805 47.826 0.00 0.00 0.00 4.24
8730 9487 3.587061 TGAGTTGAAAGGAGGGAATAGCA 59.413 43.478 0.00 0.00 0.00 3.49
8731 9488 4.195416 CTGAGTTGAAAGGAGGGAATAGC 58.805 47.826 0.00 0.00 0.00 2.97
8732 9489 4.195416 GCTGAGTTGAAAGGAGGGAATAG 58.805 47.826 0.00 0.00 0.00 1.73
8733 9490 3.054361 GGCTGAGTTGAAAGGAGGGAATA 60.054 47.826 0.00 0.00 0.00 1.75
8734 9491 2.291217 GGCTGAGTTGAAAGGAGGGAAT 60.291 50.000 0.00 0.00 0.00 3.01
8735 9492 1.073923 GGCTGAGTTGAAAGGAGGGAA 59.926 52.381 0.00 0.00 0.00 3.97
8736 9493 0.693049 GGCTGAGTTGAAAGGAGGGA 59.307 55.000 0.00 0.00 0.00 4.20
8737 9494 0.322906 GGGCTGAGTTGAAAGGAGGG 60.323 60.000 0.00 0.00 0.00 4.30
8765 9522 2.708037 TACACTTACACAGGGTCCCT 57.292 50.000 3.85 3.85 39.03 4.20
8829 9642 9.787532 CAAGAAATGTTTGGATTACGTGATTAT 57.212 29.630 0.00 0.00 0.00 1.28
8830 9643 8.240682 CCAAGAAATGTTTGGATTACGTGATTA 58.759 33.333 0.00 0.00 46.42 1.75
8832 9645 6.620678 CCAAGAAATGTTTGGATTACGTGAT 58.379 36.000 0.00 0.00 46.42 3.06
8833 9646 5.563867 GCCAAGAAATGTTTGGATTACGTGA 60.564 40.000 8.13 0.00 46.42 4.35
8834 9647 4.621034 GCCAAGAAATGTTTGGATTACGTG 59.379 41.667 8.13 0.00 46.42 4.49
8835 9648 4.614993 CGCCAAGAAATGTTTGGATTACGT 60.615 41.667 8.13 0.00 46.42 3.57
8836 9649 3.851403 CGCCAAGAAATGTTTGGATTACG 59.149 43.478 8.13 0.00 46.42 3.18
8837 9650 4.805219 ACGCCAAGAAATGTTTGGATTAC 58.195 39.130 8.13 0.00 46.42 1.89
8838 9651 5.461032 AACGCCAAGAAATGTTTGGATTA 57.539 34.783 8.13 0.00 46.42 1.75
8843 9656 3.452474 TGGAAACGCCAAGAAATGTTTG 58.548 40.909 0.00 0.00 45.87 2.93
8910 9756 1.146774 TGGCATTCAGGGACAAAAGGA 59.853 47.619 0.00 0.00 0.00 3.36
9002 9848 1.291184 GGTTTAGCGCGTACGGGTTT 61.291 55.000 29.58 21.14 40.57 3.27
9079 9925 4.901849 TGGGTTTGGAATGTGGATTTGTTA 59.098 37.500 0.00 0.00 0.00 2.41
9128 9975 1.600485 GGACTTCCGCTTTTTCGACAA 59.400 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.