Multiple sequence alignment - TraesCS3D01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G313700 chr3D 100.000 2816 0 0 1 2816 427633033 427630218 0.000000e+00 5201.0
1 TraesCS3D01G313700 chr3B 90.796 2086 108 34 776 2816 559110243 559108197 0.000000e+00 2712.0
2 TraesCS3D01G313700 chr3B 79.958 474 91 4 46 518 709784779 709785249 2.080000e-91 346.0
3 TraesCS3D01G313700 chr3B 75.297 421 76 14 29 433 346259095 346258687 2.880000e-40 176.0
4 TraesCS3D01G313700 chr3A 90.645 1999 83 29 853 2816 558515425 558517354 0.000000e+00 2560.0
5 TraesCS3D01G313700 chr3A 81.465 437 74 7 88 522 419477155 419476724 4.460000e-93 351.0
6 TraesCS3D01G313700 chr1D 79.528 635 113 13 34 665 361801275 361801895 1.200000e-118 436.0
7 TraesCS3D01G313700 chr1D 78.808 604 107 14 38 634 344691016 344691605 1.220000e-103 387.0
8 TraesCS3D01G313700 chr1D 91.525 59 4 1 1090 1147 416468866 416468924 2.330000e-11 80.5
9 TraesCS3D01G313700 chr7D 81.649 485 82 6 37 519 151012198 151012677 2.030000e-106 396.0
10 TraesCS3D01G313700 chr7D 77.796 608 120 9 37 638 258988323 258987725 7.420000e-96 361.0
11 TraesCS3D01G313700 chr6D 78.106 644 125 10 41 678 147645182 147644549 7.310000e-106 394.0
12 TraesCS3D01G313700 chr2B 80.083 482 91 5 39 519 704288972 704289449 1.240000e-93 353.0
13 TraesCS3D01G313700 chrUn 80.211 475 82 5 34 507 52976313 52976776 2.080000e-91 346.0
14 TraesCS3D01G313700 chr1A 92.647 68 5 0 1745 1812 513733667 513733734 6.420000e-17 99.0
15 TraesCS3D01G313700 chr1A 89.831 59 5 1 1090 1147 513732987 513733045 1.080000e-09 75.0
16 TraesCS3D01G313700 chr1B 94.231 52 3 0 1096 1147 563025110 563025161 2.330000e-11 80.5
17 TraesCS3D01G313700 chr5D 100.000 30 0 0 1 30 117041461 117041432 3.920000e-04 56.5
18 TraesCS3D01G313700 chr2D 100.000 30 0 0 2339 2368 118554373 118554344 3.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G313700 chr3D 427630218 427633033 2815 True 5201 5201 100.000 1 2816 1 chr3D.!!$R1 2815
1 TraesCS3D01G313700 chr3B 559108197 559110243 2046 True 2712 2712 90.796 776 2816 1 chr3B.!!$R2 2040
2 TraesCS3D01G313700 chr3A 558515425 558517354 1929 False 2560 2560 90.645 853 2816 1 chr3A.!!$F1 1963
3 TraesCS3D01G313700 chr1D 361801275 361801895 620 False 436 436 79.528 34 665 1 chr1D.!!$F2 631
4 TraesCS3D01G313700 chr1D 344691016 344691605 589 False 387 387 78.808 38 634 1 chr1D.!!$F1 596
5 TraesCS3D01G313700 chr7D 258987725 258988323 598 True 361 361 77.796 37 638 1 chr7D.!!$R1 601
6 TraesCS3D01G313700 chr6D 147644549 147645182 633 True 394 394 78.106 41 678 1 chr6D.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 513 0.096976 CCTTTAACGTGGAGCATGCG 59.903 55.0 13.01 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2359 0.107456 ACTGAGCACTGGACCACTTG 59.893 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.640428 ACCATGATCTTGCGTGTACG 58.360 50.000 3.07 0.00 43.27 3.67
20 21 1.067142 ACCATGATCTTGCGTGTACGT 60.067 47.619 6.27 0.00 42.22 3.57
21 22 1.324435 CCATGATCTTGCGTGTACGTG 59.676 52.381 0.00 0.00 42.22 4.49
22 23 1.324435 CATGATCTTGCGTGTACGTGG 59.676 52.381 0.00 0.00 42.22 4.94
23 24 0.599060 TGATCTTGCGTGTACGTGGA 59.401 50.000 0.00 3.04 42.22 4.02
24 25 0.989890 GATCTTGCGTGTACGTGGAC 59.010 55.000 0.00 0.00 42.22 4.02
25 26 0.315886 ATCTTGCGTGTACGTGGACA 59.684 50.000 0.00 0.00 42.22 4.02
26 27 0.102663 TCTTGCGTGTACGTGGACAA 59.897 50.000 0.00 1.35 42.22 3.18
27 28 0.231279 CTTGCGTGTACGTGGACAAC 59.769 55.000 0.00 0.00 42.22 3.32
28 29 0.459759 TTGCGTGTACGTGGACAACA 60.460 50.000 0.00 0.00 42.22 3.33
29 30 1.146957 TGCGTGTACGTGGACAACAC 61.147 55.000 8.22 8.22 46.78 3.32
71 72 1.192146 AACTGGCTCTGTCGGGCTAA 61.192 55.000 0.00 0.00 0.00 3.09
75 76 2.885861 CTCTGTCGGGCTAAGCGT 59.114 61.111 0.00 0.00 0.00 5.07
76 77 1.215647 CTCTGTCGGGCTAAGCGTT 59.784 57.895 0.00 0.00 0.00 4.84
112 113 0.102481 GCTTCCTCGCTCGTATCCAA 59.898 55.000 0.00 0.00 0.00 3.53
114 115 1.405821 CTTCCTCGCTCGTATCCAACT 59.594 52.381 0.00 0.00 0.00 3.16
119 120 0.460284 CGCTCGTATCCAACTGGCTT 60.460 55.000 0.00 0.00 34.44 4.35
146 147 2.679930 GCCACCTAGCCGACTTTTATGT 60.680 50.000 0.00 0.00 0.00 2.29
200 201 3.087370 TCGAAAGAGTGGAGGAGATGA 57.913 47.619 0.00 0.00 34.84 2.92
205 207 5.625426 CGAAAGAGTGGAGGAGATGATGAAA 60.625 44.000 0.00 0.00 0.00 2.69
217 219 4.305524 AGATGATGAAAGGAGGAGATGGT 58.694 43.478 0.00 0.00 0.00 3.55
244 246 0.670546 CGGAGTGGTGCGATTCTTGT 60.671 55.000 0.00 0.00 40.58 3.16
245 247 1.523758 GGAGTGGTGCGATTCTTGTT 58.476 50.000 0.00 0.00 0.00 2.83
322 324 2.652893 CTTAATGCAAGCCCGCTCGC 62.653 60.000 0.00 0.00 0.00 5.03
323 325 3.967393 TAATGCAAGCCCGCTCGCA 62.967 57.895 4.54 4.54 40.49 5.10
395 398 3.444916 GAGACATTTGAATACGGCGAGA 58.555 45.455 16.62 0.05 0.00 4.04
407 410 2.383527 GGCGAGAAGGCGTGTTCAG 61.384 63.158 0.00 0.00 35.04 3.02
420 423 3.923864 TTCAGCCGGACGTGCAGT 61.924 61.111 5.05 0.00 0.00 4.40
421 424 4.662961 TCAGCCGGACGTGCAGTG 62.663 66.667 5.05 0.68 0.00 3.66
454 457 3.672255 CTGGCGCGCCACTTCAATG 62.672 63.158 46.88 31.35 41.89 2.82
455 458 3.430862 GGCGCGCCACTTCAATGA 61.431 61.111 43.55 0.00 35.81 2.57
461 464 1.361668 CGCCACTTCAATGACGGAGG 61.362 60.000 0.00 0.00 0.00 4.30
464 467 1.081892 CACTTCAATGACGGAGGCAG 58.918 55.000 0.00 0.00 0.00 4.85
465 468 0.674895 ACTTCAATGACGGAGGCAGC 60.675 55.000 0.00 0.00 0.00 5.25
466 469 1.699656 CTTCAATGACGGAGGCAGCG 61.700 60.000 0.00 0.00 0.00 5.18
467 470 2.125552 CAATGACGGAGGCAGCGA 60.126 61.111 0.00 0.00 0.00 4.93
468 471 2.169789 CAATGACGGAGGCAGCGAG 61.170 63.158 0.00 0.00 0.00 5.03
469 472 2.351244 AATGACGGAGGCAGCGAGA 61.351 57.895 0.00 0.00 0.00 4.04
470 473 1.888436 AATGACGGAGGCAGCGAGAA 61.888 55.000 0.00 0.00 0.00 2.87
471 474 2.202676 GACGGAGGCAGCGAGAAG 60.203 66.667 0.00 0.00 0.00 2.85
472 475 2.992114 ACGGAGGCAGCGAGAAGT 60.992 61.111 0.00 0.00 0.00 3.01
473 476 2.202676 CGGAGGCAGCGAGAAGTC 60.203 66.667 0.00 0.00 0.00 3.01
482 485 4.094684 CGAGAAGTCGCATCCACC 57.905 61.111 0.00 0.00 39.88 4.61
483 486 1.519455 CGAGAAGTCGCATCCACCC 60.519 63.158 0.00 0.00 39.88 4.61
484 487 1.153349 GAGAAGTCGCATCCACCCC 60.153 63.158 0.00 0.00 0.00 4.95
485 488 2.511600 GAAGTCGCATCCACCCCG 60.512 66.667 0.00 0.00 0.00 5.73
486 489 3.000819 AAGTCGCATCCACCCCGA 61.001 61.111 0.00 0.00 0.00 5.14
487 490 2.907897 GAAGTCGCATCCACCCCGAG 62.908 65.000 0.00 0.00 0.00 4.63
488 491 4.530857 GTCGCATCCACCCCGAGG 62.531 72.222 0.00 0.00 40.04 4.63
498 501 4.313819 CCCCGAGGTGCCTTTAAC 57.686 61.111 0.00 0.00 0.00 2.01
499 502 1.743995 CCCCGAGGTGCCTTTAACG 60.744 63.158 0.00 0.00 0.00 3.18
500 503 1.004200 CCCGAGGTGCCTTTAACGT 60.004 57.895 0.00 0.00 0.00 3.99
501 504 1.296056 CCCGAGGTGCCTTTAACGTG 61.296 60.000 0.00 0.00 0.00 4.49
502 505 1.296056 CCGAGGTGCCTTTAACGTGG 61.296 60.000 0.00 0.00 0.00 4.94
503 506 0.320073 CGAGGTGCCTTTAACGTGGA 60.320 55.000 0.00 0.00 0.00 4.02
504 507 1.439679 GAGGTGCCTTTAACGTGGAG 58.560 55.000 0.00 0.00 0.00 3.86
505 508 0.605589 AGGTGCCTTTAACGTGGAGC 60.606 55.000 0.00 0.00 0.00 4.70
506 509 0.887387 GGTGCCTTTAACGTGGAGCA 60.887 55.000 0.00 0.00 0.00 4.26
507 510 1.165270 GTGCCTTTAACGTGGAGCAT 58.835 50.000 0.00 0.00 32.11 3.79
508 511 1.135689 GTGCCTTTAACGTGGAGCATG 60.136 52.381 0.00 0.00 32.11 4.06
509 512 0.179163 GCCTTTAACGTGGAGCATGC 60.179 55.000 10.51 10.51 0.00 4.06
510 513 0.096976 CCTTTAACGTGGAGCATGCG 59.903 55.000 13.01 0.00 0.00 4.73
511 514 0.096976 CTTTAACGTGGAGCATGCGG 59.903 55.000 13.01 3.19 0.00 5.69
512 515 1.302383 TTTAACGTGGAGCATGCGGG 61.302 55.000 13.01 3.56 0.00 6.13
520 523 2.503061 AGCATGCGGGCTCTACTG 59.497 61.111 13.01 0.00 41.05 2.74
521 524 2.187946 GCATGCGGGCTCTACTGT 59.812 61.111 0.00 0.00 0.00 3.55
522 525 1.884926 GCATGCGGGCTCTACTGTC 60.885 63.158 0.00 0.00 0.00 3.51
523 526 1.819229 CATGCGGGCTCTACTGTCT 59.181 57.895 0.00 0.00 0.00 3.41
524 527 1.032794 CATGCGGGCTCTACTGTCTA 58.967 55.000 0.00 0.00 0.00 2.59
525 528 1.033574 ATGCGGGCTCTACTGTCTAC 58.966 55.000 0.00 0.00 0.00 2.59
526 529 0.323087 TGCGGGCTCTACTGTCTACA 60.323 55.000 0.00 0.00 0.00 2.74
527 530 1.033574 GCGGGCTCTACTGTCTACAT 58.966 55.000 0.00 0.00 0.00 2.29
528 531 1.001158 GCGGGCTCTACTGTCTACATC 60.001 57.143 0.00 0.00 0.00 3.06
529 532 1.264557 CGGGCTCTACTGTCTACATCG 59.735 57.143 0.00 0.00 0.00 3.84
530 533 2.573369 GGGCTCTACTGTCTACATCGA 58.427 52.381 0.00 0.00 0.00 3.59
531 534 2.291190 GGGCTCTACTGTCTACATCGAC 59.709 54.545 0.00 0.00 34.52 4.20
532 535 2.943690 GGCTCTACTGTCTACATCGACA 59.056 50.000 0.00 0.00 41.33 4.35
533 536 3.566322 GGCTCTACTGTCTACATCGACAT 59.434 47.826 0.00 0.00 42.51 3.06
534 537 4.532276 GCTCTACTGTCTACATCGACATG 58.468 47.826 0.00 0.00 42.51 3.21
535 538 4.273724 GCTCTACTGTCTACATCGACATGA 59.726 45.833 0.00 0.00 42.51 3.07
536 539 5.220873 GCTCTACTGTCTACATCGACATGAA 60.221 44.000 0.00 0.00 42.51 2.57
537 540 6.514212 GCTCTACTGTCTACATCGACATGAAT 60.514 42.308 0.00 0.00 42.51 2.57
538 541 6.729187 TCTACTGTCTACATCGACATGAATG 58.271 40.000 0.00 2.83 42.51 2.67
539 542 4.115516 ACTGTCTACATCGACATGAATGC 58.884 43.478 0.00 0.00 42.51 3.56
540 543 4.114794 CTGTCTACATCGACATGAATGCA 58.885 43.478 0.00 0.00 42.51 3.96
541 544 4.114794 TGTCTACATCGACATGAATGCAG 58.885 43.478 0.00 0.84 38.89 4.41
542 545 4.142182 TGTCTACATCGACATGAATGCAGA 60.142 41.667 0.00 3.26 38.89 4.26
543 546 4.208047 GTCTACATCGACATGAATGCAGAC 59.792 45.833 17.15 17.15 33.72 3.51
544 547 2.976589 ACATCGACATGAATGCAGACA 58.023 42.857 0.00 0.00 33.72 3.41
545 548 2.934553 ACATCGACATGAATGCAGACAG 59.065 45.455 0.00 0.00 33.72 3.51
546 549 1.362768 TCGACATGAATGCAGACAGC 58.637 50.000 0.00 0.00 45.96 4.40
547 550 1.066645 TCGACATGAATGCAGACAGCT 60.067 47.619 0.00 0.00 45.94 4.24
548 551 1.062148 CGACATGAATGCAGACAGCTG 59.938 52.381 13.48 13.48 45.94 4.24
549 552 1.400846 GACATGAATGCAGACAGCTGG 59.599 52.381 19.93 0.73 45.94 4.85
550 553 0.100682 CATGAATGCAGACAGCTGGC 59.899 55.000 19.93 16.91 45.94 4.85
551 554 1.374343 ATGAATGCAGACAGCTGGCG 61.374 55.000 19.93 12.79 45.94 5.69
552 555 3.392595 GAATGCAGACAGCTGGCGC 62.393 63.158 23.82 23.82 45.94 6.53
556 559 4.383861 CAGACAGCTGGCGCCTGA 62.384 66.667 34.52 12.28 38.51 3.86
557 560 3.630013 AGACAGCTGGCGCCTGAA 61.630 61.111 34.52 11.45 36.60 3.02
558 561 2.437359 GACAGCTGGCGCCTGAAT 60.437 61.111 34.52 19.92 36.60 2.57
559 562 2.749044 ACAGCTGGCGCCTGAATG 60.749 61.111 34.52 29.89 36.60 2.67
560 563 3.515286 CAGCTGGCGCCTGAATGG 61.515 66.667 34.52 16.63 36.60 3.16
561 564 3.720601 AGCTGGCGCCTGAATGGA 61.721 61.111 34.52 8.99 38.35 3.41
562 565 2.751436 GCTGGCGCCTGAATGGAA 60.751 61.111 34.52 8.17 38.35 3.53
563 566 2.768492 GCTGGCGCCTGAATGGAAG 61.768 63.158 34.52 18.76 38.35 3.46
564 567 2.751436 TGGCGCCTGAATGGAAGC 60.751 61.111 29.70 0.00 39.28 3.86
565 568 2.751436 GGCGCCTGAATGGAAGCA 60.751 61.111 22.15 0.00 40.91 3.91
566 569 2.486966 GCGCCTGAATGGAAGCAC 59.513 61.111 0.00 0.00 39.61 4.40
567 570 2.787249 CGCCTGAATGGAAGCACG 59.213 61.111 0.00 0.00 38.35 5.34
568 571 2.486966 GCCTGAATGGAAGCACGC 59.513 61.111 0.00 0.00 38.35 5.34
569 572 2.787249 CCTGAATGGAAGCACGCG 59.213 61.111 3.53 3.53 38.35 6.01
570 573 2.753966 CCTGAATGGAAGCACGCGG 61.754 63.158 12.47 0.00 38.35 6.46
571 574 1.741401 CTGAATGGAAGCACGCGGA 60.741 57.895 12.47 0.00 0.00 5.54
572 575 1.699656 CTGAATGGAAGCACGCGGAG 61.700 60.000 12.47 3.23 0.00 4.63
573 576 1.741770 GAATGGAAGCACGCGGAGT 60.742 57.895 12.47 0.00 0.00 3.85
581 584 3.374402 CACGCGGAGTGGAGAGGT 61.374 66.667 12.47 0.00 46.77 3.85
582 585 2.600769 ACGCGGAGTGGAGAGGTT 60.601 61.111 12.47 0.00 45.78 3.50
583 586 2.207924 ACGCGGAGTGGAGAGGTTT 61.208 57.895 12.47 0.00 45.78 3.27
584 587 1.004918 CGCGGAGTGGAGAGGTTTT 60.005 57.895 0.00 0.00 0.00 2.43
585 588 0.602905 CGCGGAGTGGAGAGGTTTTT 60.603 55.000 0.00 0.00 0.00 1.94
586 589 1.337447 CGCGGAGTGGAGAGGTTTTTA 60.337 52.381 0.00 0.00 0.00 1.52
587 590 2.347731 GCGGAGTGGAGAGGTTTTTAG 58.652 52.381 0.00 0.00 0.00 1.85
588 591 2.289506 GCGGAGTGGAGAGGTTTTTAGT 60.290 50.000 0.00 0.00 0.00 2.24
589 592 3.326747 CGGAGTGGAGAGGTTTTTAGTG 58.673 50.000 0.00 0.00 0.00 2.74
590 593 3.676093 GGAGTGGAGAGGTTTTTAGTGG 58.324 50.000 0.00 0.00 0.00 4.00
591 594 3.559384 GGAGTGGAGAGGTTTTTAGTGGG 60.559 52.174 0.00 0.00 0.00 4.61
592 595 3.053826 AGTGGAGAGGTTTTTAGTGGGT 58.946 45.455 0.00 0.00 0.00 4.51
593 596 3.072622 AGTGGAGAGGTTTTTAGTGGGTC 59.927 47.826 0.00 0.00 0.00 4.46
594 597 3.050089 TGGAGAGGTTTTTAGTGGGTCA 58.950 45.455 0.00 0.00 0.00 4.02
595 598 3.181448 TGGAGAGGTTTTTAGTGGGTCAC 60.181 47.826 0.00 0.00 34.10 3.67
596 599 3.064931 GAGAGGTTTTTAGTGGGTCACG 58.935 50.000 0.00 0.00 39.64 4.35
597 600 2.701951 AGAGGTTTTTAGTGGGTCACGA 59.298 45.455 0.00 0.00 39.64 4.35
598 601 3.326880 AGAGGTTTTTAGTGGGTCACGAT 59.673 43.478 0.00 0.00 39.64 3.73
599 602 3.408634 AGGTTTTTAGTGGGTCACGATG 58.591 45.455 0.00 0.00 39.64 3.84
600 603 2.486592 GGTTTTTAGTGGGTCACGATGG 59.513 50.000 0.00 0.00 39.64 3.51
601 604 3.143728 GTTTTTAGTGGGTCACGATGGT 58.856 45.455 0.00 0.00 39.64 3.55
602 605 3.495434 TTTTAGTGGGTCACGATGGTT 57.505 42.857 0.00 0.00 39.64 3.67
603 606 4.620589 TTTTAGTGGGTCACGATGGTTA 57.379 40.909 0.00 0.00 39.64 2.85
604 607 3.880047 TTAGTGGGTCACGATGGTTAG 57.120 47.619 0.00 0.00 39.64 2.34
605 608 1.933021 AGTGGGTCACGATGGTTAGA 58.067 50.000 0.00 0.00 39.64 2.10
606 609 2.253610 AGTGGGTCACGATGGTTAGAA 58.746 47.619 0.00 0.00 39.64 2.10
607 610 2.233922 AGTGGGTCACGATGGTTAGAAG 59.766 50.000 0.00 0.00 39.64 2.85
608 611 1.066430 TGGGTCACGATGGTTAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
609 612 1.278238 GGTCACGATGGTTAGAAGCG 58.722 55.000 0.00 0.00 0.00 4.68
610 613 1.278238 GTCACGATGGTTAGAAGCGG 58.722 55.000 0.00 0.00 0.00 5.52
611 614 1.135199 GTCACGATGGTTAGAAGCGGA 60.135 52.381 0.00 0.00 0.00 5.54
612 615 1.135199 TCACGATGGTTAGAAGCGGAC 60.135 52.381 0.00 0.00 0.00 4.79
613 616 1.135083 CACGATGGTTAGAAGCGGACT 60.135 52.381 0.00 0.00 0.00 3.85
614 617 1.549170 ACGATGGTTAGAAGCGGACTT 59.451 47.619 0.00 0.00 39.43 3.01
615 618 1.927174 CGATGGTTAGAAGCGGACTTG 59.073 52.381 0.00 0.00 35.82 3.16
616 619 2.280628 GATGGTTAGAAGCGGACTTGG 58.719 52.381 0.00 0.00 35.82 3.61
617 620 1.344065 TGGTTAGAAGCGGACTTGGA 58.656 50.000 0.00 0.00 35.82 3.53
618 621 1.695242 TGGTTAGAAGCGGACTTGGAA 59.305 47.619 0.00 0.00 35.82 3.53
619 622 2.304761 TGGTTAGAAGCGGACTTGGAAT 59.695 45.455 0.00 0.00 35.82 3.01
620 623 2.937149 GGTTAGAAGCGGACTTGGAATC 59.063 50.000 0.00 0.00 35.82 2.52
621 624 3.596214 GTTAGAAGCGGACTTGGAATCA 58.404 45.455 0.00 0.00 35.82 2.57
622 625 2.393271 AGAAGCGGACTTGGAATCAG 57.607 50.000 0.00 0.00 35.82 2.90
623 626 1.625818 AGAAGCGGACTTGGAATCAGT 59.374 47.619 0.00 0.00 35.82 3.41
624 627 1.734465 GAAGCGGACTTGGAATCAGTG 59.266 52.381 0.00 0.00 35.82 3.66
625 628 0.674895 AGCGGACTTGGAATCAGTGC 60.675 55.000 0.00 0.00 0.00 4.40
626 629 2.081526 CGGACTTGGAATCAGTGCG 58.918 57.895 0.88 0.88 40.51 5.34
627 630 1.796796 GGACTTGGAATCAGTGCGC 59.203 57.895 0.00 0.00 0.00 6.09
628 631 0.955428 GGACTTGGAATCAGTGCGCA 60.955 55.000 5.66 5.66 0.00 6.09
629 632 0.166814 GACTTGGAATCAGTGCGCAC 59.833 55.000 32.79 32.79 0.00 5.34
630 633 0.250467 ACTTGGAATCAGTGCGCACT 60.250 50.000 36.44 36.44 43.61 4.40
631 634 0.445436 CTTGGAATCAGTGCGCACTC 59.555 55.000 38.87 26.89 40.20 3.51
632 635 0.955428 TTGGAATCAGTGCGCACTCC 60.955 55.000 38.87 33.65 40.20 3.85
633 636 2.109126 GGAATCAGTGCGCACTCCC 61.109 63.158 38.87 29.58 40.20 4.30
634 637 1.375908 GAATCAGTGCGCACTCCCA 60.376 57.895 38.87 25.41 40.20 4.37
635 638 1.639298 GAATCAGTGCGCACTCCCAC 61.639 60.000 38.87 25.07 40.20 4.61
636 639 2.395988 AATCAGTGCGCACTCCCACA 62.396 55.000 38.87 20.46 40.20 4.17
637 640 2.395988 ATCAGTGCGCACTCCCACAA 62.396 55.000 38.87 19.93 40.20 3.33
638 641 2.186160 CAGTGCGCACTCCCACAAA 61.186 57.895 38.87 0.00 40.20 2.83
639 642 2.186826 AGTGCGCACTCCCACAAAC 61.187 57.895 36.44 8.32 36.92 2.93
640 643 2.124529 TGCGCACTCCCACAAACA 60.125 55.556 5.66 0.00 0.00 2.83
641 644 1.528076 TGCGCACTCCCACAAACAT 60.528 52.632 5.66 0.00 0.00 2.71
642 645 1.210155 GCGCACTCCCACAAACATC 59.790 57.895 0.30 0.00 0.00 3.06
643 646 1.237285 GCGCACTCCCACAAACATCT 61.237 55.000 0.30 0.00 0.00 2.90
644 647 0.798776 CGCACTCCCACAAACATCTC 59.201 55.000 0.00 0.00 0.00 2.75
645 648 1.877680 CGCACTCCCACAAACATCTCA 60.878 52.381 0.00 0.00 0.00 3.27
646 649 2.440409 GCACTCCCACAAACATCTCAT 58.560 47.619 0.00 0.00 0.00 2.90
647 650 2.163010 GCACTCCCACAAACATCTCATG 59.837 50.000 0.00 0.00 0.00 3.07
649 652 3.189910 CACTCCCACAAACATCTCATGTG 59.810 47.826 0.00 0.00 44.07 3.21
650 653 3.181440 ACTCCCACAAACATCTCATGTGT 60.181 43.478 4.65 0.00 44.07 3.72
651 654 4.041567 ACTCCCACAAACATCTCATGTGTA 59.958 41.667 4.65 0.00 44.07 2.90
652 655 5.178096 TCCCACAAACATCTCATGTGTAT 57.822 39.130 4.65 0.00 44.07 2.29
653 656 5.185454 TCCCACAAACATCTCATGTGTATC 58.815 41.667 4.65 0.00 44.07 2.24
654 657 5.045651 TCCCACAAACATCTCATGTGTATCT 60.046 40.000 4.65 0.00 44.07 1.98
655 658 5.295292 CCCACAAACATCTCATGTGTATCTC 59.705 44.000 4.65 0.00 44.07 2.75
656 659 6.111382 CCACAAACATCTCATGTGTATCTCT 58.889 40.000 4.65 0.00 44.07 3.10
657 660 6.036844 CCACAAACATCTCATGTGTATCTCTG 59.963 42.308 4.65 0.00 44.07 3.35
658 661 6.815142 CACAAACATCTCATGTGTATCTCTGA 59.185 38.462 0.00 0.00 44.07 3.27
659 662 7.494952 CACAAACATCTCATGTGTATCTCTGAT 59.505 37.037 0.00 0.00 44.07 2.90
660 663 8.045507 ACAAACATCTCATGTGTATCTCTGATT 58.954 33.333 0.00 0.00 44.07 2.57
661 664 8.890718 CAAACATCTCATGTGTATCTCTGATTT 58.109 33.333 0.00 0.00 44.07 2.17
662 665 8.434733 AACATCTCATGTGTATCTCTGATTTG 57.565 34.615 0.00 0.00 44.07 2.32
663 666 6.482641 ACATCTCATGTGTATCTCTGATTTGC 59.517 38.462 0.00 0.00 43.01 3.68
664 667 5.045872 TCTCATGTGTATCTCTGATTTGCG 58.954 41.667 0.00 0.00 0.00 4.85
665 668 5.009854 TCATGTGTATCTCTGATTTGCGA 57.990 39.130 0.00 0.00 0.00 5.10
666 669 5.418676 TCATGTGTATCTCTGATTTGCGAA 58.581 37.500 0.00 0.00 0.00 4.70
667 670 5.874261 TCATGTGTATCTCTGATTTGCGAAA 59.126 36.000 0.00 0.00 0.00 3.46
668 671 5.784750 TGTGTATCTCTGATTTGCGAAAG 57.215 39.130 0.00 0.00 0.00 2.62
696 699 7.105494 ACACGTTTGAATATGCTATGTATCG 57.895 36.000 0.00 0.00 0.00 2.92
697 700 6.921307 ACACGTTTGAATATGCTATGTATCGA 59.079 34.615 0.00 0.00 0.00 3.59
698 701 7.598869 ACACGTTTGAATATGCTATGTATCGAT 59.401 33.333 2.16 2.16 0.00 3.59
699 702 9.072294 CACGTTTGAATATGCTATGTATCGATA 57.928 33.333 0.00 0.00 0.00 2.92
700 703 9.073368 ACGTTTGAATATGCTATGTATCGATAC 57.927 33.333 25.48 25.48 0.00 2.24
701 704 9.072294 CGTTTGAATATGCTATGTATCGATACA 57.928 33.333 33.83 33.83 46.21 2.29
703 706 9.586435 TTTGAATATGCTATGTATCGATACAGG 57.414 33.333 34.32 29.03 45.46 4.00
704 707 8.519799 TGAATATGCTATGTATCGATACAGGA 57.480 34.615 34.32 25.74 45.46 3.86
705 708 8.406297 TGAATATGCTATGTATCGATACAGGAC 58.594 37.037 34.32 26.42 45.46 3.85
706 709 5.584253 ATGCTATGTATCGATACAGGACC 57.416 43.478 34.32 24.08 45.46 4.46
707 710 3.439129 TGCTATGTATCGATACAGGACCG 59.561 47.826 34.32 22.86 45.46 4.79
708 711 3.731264 GCTATGTATCGATACAGGACCGC 60.731 52.174 34.32 26.73 45.46 5.68
709 712 0.589708 TGTATCGATACAGGACCGCG 59.410 55.000 29.79 0.00 38.28 6.46
710 713 0.590195 GTATCGATACAGGACCGCGT 59.410 55.000 26.86 0.00 33.52 6.01
711 714 1.002033 GTATCGATACAGGACCGCGTT 60.002 52.381 26.86 0.00 33.52 4.84
712 715 0.248907 ATCGATACAGGACCGCGTTG 60.249 55.000 4.92 0.09 0.00 4.10
713 716 1.138036 CGATACAGGACCGCGTTGA 59.862 57.895 4.92 0.00 0.00 3.18
714 717 0.457166 CGATACAGGACCGCGTTGAA 60.457 55.000 4.92 0.00 0.00 2.69
715 718 1.717194 GATACAGGACCGCGTTGAAA 58.283 50.000 4.92 0.00 0.00 2.69
716 719 1.659098 GATACAGGACCGCGTTGAAAG 59.341 52.381 4.92 0.00 0.00 2.62
717 720 0.320073 TACAGGACCGCGTTGAAAGG 60.320 55.000 4.92 0.00 0.00 3.11
718 721 1.597027 CAGGACCGCGTTGAAAGGT 60.597 57.895 4.92 0.00 41.63 3.50
719 722 1.597027 AGGACCGCGTTGAAAGGTG 60.597 57.895 4.92 0.00 38.57 4.00
720 723 2.613506 GGACCGCGTTGAAAGGTGG 61.614 63.158 4.92 12.51 46.75 4.61
722 725 4.364817 CCGCGTTGAAAGGTGGTA 57.635 55.556 4.92 0.00 39.07 3.25
723 726 1.864176 CCGCGTTGAAAGGTGGTAC 59.136 57.895 4.92 0.00 39.07 3.34
724 727 1.489824 CGCGTTGAAAGGTGGTACG 59.510 57.895 0.00 0.00 35.48 3.67
725 728 1.864176 GCGTTGAAAGGTGGTACGG 59.136 57.895 0.00 0.00 33.17 4.02
726 729 1.864176 CGTTGAAAGGTGGTACGGC 59.136 57.895 0.00 0.00 0.00 5.68
727 730 1.571215 CGTTGAAAGGTGGTACGGCC 61.571 60.000 0.00 0.00 37.90 6.13
728 731 0.535553 GTTGAAAGGTGGTACGGCCA 60.536 55.000 2.24 0.00 46.95 5.36
740 743 2.202690 CGGCCAACGCGATCTACA 60.203 61.111 15.93 0.00 35.02 2.74
741 744 1.807981 CGGCCAACGCGATCTACAA 60.808 57.895 15.93 0.00 35.02 2.41
742 745 1.713830 GGCCAACGCGATCTACAAC 59.286 57.895 15.93 0.00 35.02 3.32
743 746 1.343821 GCCAACGCGATCTACAACG 59.656 57.895 15.93 0.00 0.00 4.10
744 747 1.995991 CCAACGCGATCTACAACGG 59.004 57.895 15.93 0.00 0.00 4.44
745 748 0.734942 CCAACGCGATCTACAACGGT 60.735 55.000 15.93 0.00 0.00 4.83
746 749 1.065358 CAACGCGATCTACAACGGTT 58.935 50.000 15.93 0.00 0.00 4.44
747 750 1.065358 AACGCGATCTACAACGGTTG 58.935 50.000 15.93 18.81 0.00 3.77
748 751 1.343821 CGCGATCTACAACGGTTGC 59.656 57.895 20.20 4.04 0.00 4.17
749 752 1.343821 GCGATCTACAACGGTTGCG 59.656 57.895 20.20 15.41 0.00 4.85
750 753 1.995991 CGATCTACAACGGTTGCGG 59.004 57.895 20.20 12.94 0.00 5.69
751 754 1.418342 CGATCTACAACGGTTGCGGG 61.418 60.000 20.20 10.63 0.00 6.13
752 755 0.108520 GATCTACAACGGTTGCGGGA 60.109 55.000 20.20 15.09 0.00 5.14
753 756 0.108329 ATCTACAACGGTTGCGGGAG 60.108 55.000 20.20 12.27 0.00 4.30
754 757 1.005394 CTACAACGGTTGCGGGAGT 60.005 57.895 20.20 2.89 0.00 3.85
755 758 0.601841 CTACAACGGTTGCGGGAGTT 60.602 55.000 20.20 2.17 0.00 3.01
756 759 0.179051 TACAACGGTTGCGGGAGTTT 60.179 50.000 20.20 1.45 0.00 2.66
757 760 1.281656 CAACGGTTGCGGGAGTTTC 59.718 57.895 8.09 0.00 0.00 2.78
758 761 1.153127 AACGGTTGCGGGAGTTTCA 60.153 52.632 0.00 0.00 0.00 2.69
759 762 0.536460 AACGGTTGCGGGAGTTTCAT 60.536 50.000 0.00 0.00 0.00 2.57
760 763 1.234615 ACGGTTGCGGGAGTTTCATG 61.235 55.000 0.00 0.00 0.00 3.07
761 764 1.883021 GGTTGCGGGAGTTTCATGG 59.117 57.895 0.00 0.00 0.00 3.66
762 765 0.893727 GGTTGCGGGAGTTTCATGGT 60.894 55.000 0.00 0.00 0.00 3.55
763 766 0.521735 GTTGCGGGAGTTTCATGGTC 59.478 55.000 0.00 0.00 0.00 4.02
764 767 0.953471 TTGCGGGAGTTTCATGGTCG 60.953 55.000 0.00 0.00 0.00 4.79
765 768 2.106683 GCGGGAGTTTCATGGTCGG 61.107 63.158 0.00 0.00 0.00 4.79
766 769 2.106683 CGGGAGTTTCATGGTCGGC 61.107 63.158 0.00 0.00 0.00 5.54
767 770 2.106683 GGGAGTTTCATGGTCGGCG 61.107 63.158 0.00 0.00 0.00 6.46
768 771 1.375523 GGAGTTTCATGGTCGGCGT 60.376 57.895 6.85 0.00 0.00 5.68
769 772 0.953960 GGAGTTTCATGGTCGGCGTT 60.954 55.000 6.85 0.00 0.00 4.84
770 773 0.165944 GAGTTTCATGGTCGGCGTTG 59.834 55.000 6.85 1.09 0.00 4.10
771 774 1.209127 GTTTCATGGTCGGCGTTGG 59.791 57.895 6.85 0.00 0.00 3.77
772 775 1.969064 TTTCATGGTCGGCGTTGGG 60.969 57.895 6.85 0.00 0.00 4.12
773 776 2.398840 TTTCATGGTCGGCGTTGGGA 62.399 55.000 6.85 0.00 0.00 4.37
774 777 2.124736 CATGGTCGGCGTTGGGAT 60.125 61.111 6.85 0.00 0.00 3.85
800 804 2.852413 TCGCTACTACTCGTACACGTAC 59.148 50.000 1.19 0.00 40.80 3.67
816 820 2.027469 ACGTACAGAAATTCAGTCCCCC 60.027 50.000 0.00 0.00 0.00 5.40
837 849 3.584052 CCCTCTACGGTCCTCGCG 61.584 72.222 0.00 0.00 43.89 5.87
840 852 3.047718 CTCTACGGTCCTCGCGCAA 62.048 63.158 8.75 0.00 43.89 4.85
845 857 3.564027 GGTCCTCGCGCAAATCCG 61.564 66.667 8.75 0.00 0.00 4.18
846 858 2.508439 GTCCTCGCGCAAATCCGA 60.508 61.111 8.75 0.00 0.00 4.55
847 859 2.098233 GTCCTCGCGCAAATCCGAA 61.098 57.895 8.75 0.00 32.56 4.30
848 860 1.809619 TCCTCGCGCAAATCCGAAG 60.810 57.895 8.75 0.00 32.56 3.79
849 861 2.100631 CCTCGCGCAAATCCGAAGT 61.101 57.895 8.75 0.00 32.56 3.01
850 862 0.804544 CCTCGCGCAAATCCGAAGTA 60.805 55.000 8.75 0.00 32.56 2.24
851 863 0.297820 CTCGCGCAAATCCGAAGTAC 59.702 55.000 8.75 0.00 32.56 2.73
862 874 1.837439 TCCGAAGTACTAGTACCCCGA 59.163 52.381 30.22 19.88 36.75 5.14
879 891 0.234884 CGAAGCGAACGAAGCCTTTT 59.765 50.000 0.00 0.00 34.64 2.27
881 893 0.591659 AAGCGAACGAAGCCTTTTCC 59.408 50.000 0.00 0.00 34.64 3.13
883 895 0.110192 GCGAACGAAGCCTTTTCCAG 60.110 55.000 0.00 0.00 0.00 3.86
884 896 1.508632 CGAACGAAGCCTTTTCCAGA 58.491 50.000 0.00 0.00 0.00 3.86
885 897 1.461127 CGAACGAAGCCTTTTCCAGAG 59.539 52.381 0.00 0.00 0.00 3.35
1013 1025 1.524165 GAGAGATGGGCTGCTGCTG 60.524 63.158 15.64 0.77 39.59 4.41
1044 1056 0.745845 GCATGAAGCATCCAGACGGT 60.746 55.000 0.00 0.00 44.79 4.83
1189 1201 2.173758 TAAGCCCGTCGCCAATGTGA 62.174 55.000 0.00 0.00 38.78 3.58
1192 1204 1.449423 CCCGTCGCCAATGTGATGA 60.449 57.895 0.00 0.00 39.84 2.92
1204 1216 1.269958 TGTGATGACTGTGGAGGAGG 58.730 55.000 0.00 0.00 0.00 4.30
1716 1805 2.431942 GAGGAAAGCGTCGCGGAA 60.432 61.111 12.30 0.00 0.00 4.30
1731 1820 3.758931 GAACCCAATGCCGGTGCC 61.759 66.667 1.90 0.00 36.33 5.01
1785 1886 2.361992 TCGCTGGAGAACCCGCTA 60.362 61.111 0.00 0.00 42.82 4.26
1838 1939 0.105964 TGGTCCGATTTCCCGCTATG 59.894 55.000 0.00 0.00 0.00 2.23
1907 2008 0.909610 AACCTGGGCTAGCAGCAGTA 60.910 55.000 18.24 0.00 44.75 2.74
1908 2009 0.909610 ACCTGGGCTAGCAGCAGTAA 60.910 55.000 18.24 0.00 44.75 2.24
1969 2072 1.160329 ATCTTCCCGCGTAATGCTGC 61.160 55.000 4.92 0.00 43.27 5.25
2026 2140 1.067295 TTGGCTCTTGTGGGTGATCT 58.933 50.000 0.00 0.00 0.00 2.75
2032 2146 2.996621 CTCTTGTGGGTGATCTTCGTTC 59.003 50.000 0.00 0.00 0.00 3.95
2075 2191 0.036732 AATCGTGGAGCCTTGCTTCA 59.963 50.000 0.00 0.00 42.52 3.02
2082 2198 1.765314 GGAGCCTTGCTTCAGATCCTA 59.235 52.381 0.00 0.00 39.88 2.94
2100 2220 5.847111 TCCTATATGCATACGGTATCCAC 57.153 43.478 8.99 0.00 0.00 4.02
2103 2223 7.295340 TCCTATATGCATACGGTATCCACTAT 58.705 38.462 8.99 0.00 0.00 2.12
2104 2224 8.442374 TCCTATATGCATACGGTATCCACTATA 58.558 37.037 8.99 0.98 0.00 1.31
2105 2225 9.244292 CCTATATGCATACGGTATCCACTATAT 57.756 37.037 8.99 0.00 0.00 0.86
2109 2229 7.092137 TGCATACGGTATCCACTATATGTAC 57.908 40.000 0.00 0.00 30.96 2.90
2196 2318 6.315393 AGTTGACAGACGATTAAGTTGTGTTT 59.685 34.615 0.00 0.00 0.00 2.83
2204 2326 4.533222 GATTAAGTTGTGTTTGTGACCCG 58.467 43.478 0.00 0.00 0.00 5.28
2238 2360 4.651585 GCAAATCGCACTTTGGCA 57.348 50.000 9.32 0.00 41.79 4.92
2290 2412 4.935808 AGATGACCTCGGTTGTTGAATAAC 59.064 41.667 0.00 0.00 37.32 1.89
2383 2512 4.838152 CGGTGGGGTGCCATCGAG 62.838 72.222 0.00 0.00 45.87 4.04
2542 2683 0.885596 AACAAACGATTTCCCCGCGA 60.886 50.000 8.23 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067142 ACGTACACGCAAGATCATGGT 60.067 47.619 0.85 0.00 44.43 3.55
1 2 1.324435 CACGTACACGCAAGATCATGG 59.676 52.381 0.85 0.00 44.43 3.66
3 4 1.203758 TCCACGTACACGCAAGATCAT 59.796 47.619 0.85 0.00 44.43 2.45
4 5 0.599060 TCCACGTACACGCAAGATCA 59.401 50.000 0.85 0.00 44.43 2.92
5 6 0.989890 GTCCACGTACACGCAAGATC 59.010 55.000 0.85 0.00 44.43 2.75
6 7 0.315886 TGTCCACGTACACGCAAGAT 59.684 50.000 0.85 0.00 44.43 2.40
7 8 0.102663 TTGTCCACGTACACGCAAGA 59.897 50.000 0.85 0.00 44.43 3.02
8 9 0.231279 GTTGTCCACGTACACGCAAG 59.769 55.000 0.85 0.00 44.43 4.01
9 10 0.459759 TGTTGTCCACGTACACGCAA 60.460 50.000 0.85 0.00 44.43 4.85
10 11 1.141234 TGTTGTCCACGTACACGCA 59.859 52.632 0.85 0.00 44.43 5.24
11 12 1.561250 GTGTTGTCCACGTACACGC 59.439 57.895 3.00 0.00 44.43 5.34
12 13 1.542272 CGGTGTTGTCCACGTACACG 61.542 60.000 11.33 0.00 45.52 4.49
13 14 1.824272 GCGGTGTTGTCCACGTACAC 61.824 60.000 9.55 9.55 45.52 2.90
14 15 1.592131 GCGGTGTTGTCCACGTACA 60.592 57.895 0.00 0.00 45.52 2.90
15 16 2.312436 GGCGGTGTTGTCCACGTAC 61.312 63.158 0.00 0.00 45.52 3.67
16 17 2.029369 GGCGGTGTTGTCCACGTA 59.971 61.111 0.00 0.00 45.52 3.57
19 20 3.645975 CACGGCGGTGTTGTCCAC 61.646 66.667 13.24 0.00 43.74 4.02
61 62 2.047655 CCAACGCTTAGCCCGACA 60.048 61.111 0.00 0.00 0.00 4.35
71 72 3.241530 TGCTCCACCTCCAACGCT 61.242 61.111 0.00 0.00 0.00 5.07
75 76 2.922503 TCGCTGCTCCACCTCCAA 60.923 61.111 0.00 0.00 0.00 3.53
76 77 3.385384 CTCGCTGCTCCACCTCCA 61.385 66.667 0.00 0.00 0.00 3.86
155 156 4.139420 CGACGAGCAGGCAAAGCG 62.139 66.667 0.00 0.00 37.01 4.68
194 195 4.347583 ACCATCTCCTCCTTTCATCATCTC 59.652 45.833 0.00 0.00 0.00 2.75
200 201 2.776536 CTCCACCATCTCCTCCTTTCAT 59.223 50.000 0.00 0.00 0.00 2.57
205 207 1.760086 CGCTCCACCATCTCCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
260 262 2.224450 CCCGTCCGCCCTCTATTAAAAT 60.224 50.000 0.00 0.00 0.00 1.82
264 266 0.538977 CTCCCGTCCGCCCTCTATTA 60.539 60.000 0.00 0.00 0.00 0.98
303 305 1.353103 CGAGCGGGCTTGCATTAAG 59.647 57.895 0.00 0.00 39.49 1.85
311 313 3.443045 CCATTTGCGAGCGGGCTT 61.443 61.111 0.00 0.00 0.00 4.35
322 324 2.560861 CGGTCACACGCCCATTTG 59.439 61.111 0.00 0.00 0.00 2.32
323 325 2.671619 CCGGTCACACGCCCATTT 60.672 61.111 0.00 0.00 0.00 2.32
329 331 0.172803 AATCTACTCCGGTCACACGC 59.827 55.000 0.00 0.00 0.00 5.34
336 338 2.140839 ACCGAGAAATCTACTCCGGT 57.859 50.000 0.00 7.80 36.90 5.28
387 390 4.295119 AACACGCCTTCTCGCCGT 62.295 61.111 0.00 0.00 35.29 5.68
395 398 3.936203 TCCGGCTGAACACGCCTT 61.936 61.111 0.00 0.00 45.37 4.35
437 440 3.736100 CATTGAAGTGGCGCGCCA 61.736 61.111 46.88 46.88 45.02 5.69
446 449 0.674895 GCTGCCTCCGTCATTGAAGT 60.675 55.000 0.00 0.00 0.00 3.01
447 450 1.699656 CGCTGCCTCCGTCATTGAAG 61.700 60.000 0.00 0.00 0.00 3.02
454 457 2.202676 CTTCTCGCTGCCTCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
455 458 2.992114 ACTTCTCGCTGCCTCCGT 60.992 61.111 0.00 0.00 0.00 4.69
465 468 1.519455 GGGTGGATGCGACTTCTCG 60.519 63.158 0.00 0.00 43.28 4.04
466 469 1.153349 GGGGTGGATGCGACTTCTC 60.153 63.158 0.00 0.00 0.00 2.87
467 470 2.990479 GGGGTGGATGCGACTTCT 59.010 61.111 0.00 0.00 0.00 2.85
468 471 2.511600 CGGGGTGGATGCGACTTC 60.512 66.667 0.00 0.00 0.00 3.01
469 472 3.000819 TCGGGGTGGATGCGACTT 61.001 61.111 0.00 0.00 0.00 3.01
470 473 3.461773 CTCGGGGTGGATGCGACT 61.462 66.667 0.00 0.00 0.00 4.18
471 474 4.530857 CCTCGGGGTGGATGCGAC 62.531 72.222 0.00 0.00 0.00 5.19
481 484 1.743995 CGTTAAAGGCACCTCGGGG 60.744 63.158 0.00 0.00 38.88 5.73
482 485 1.004200 ACGTTAAAGGCACCTCGGG 60.004 57.895 0.00 0.00 0.00 5.14
483 486 1.296056 CCACGTTAAAGGCACCTCGG 61.296 60.000 0.00 0.00 0.00 4.63
484 487 0.320073 TCCACGTTAAAGGCACCTCG 60.320 55.000 0.00 0.00 0.00 4.63
485 488 1.439679 CTCCACGTTAAAGGCACCTC 58.560 55.000 0.00 0.00 0.00 3.85
486 489 0.605589 GCTCCACGTTAAAGGCACCT 60.606 55.000 0.00 0.00 0.00 4.00
487 490 0.887387 TGCTCCACGTTAAAGGCACC 60.887 55.000 0.00 0.00 0.00 5.01
488 491 1.135689 CATGCTCCACGTTAAAGGCAC 60.136 52.381 0.00 0.00 32.52 5.01
489 492 1.164411 CATGCTCCACGTTAAAGGCA 58.836 50.000 0.00 0.00 0.00 4.75
490 493 0.179163 GCATGCTCCACGTTAAAGGC 60.179 55.000 11.37 0.00 0.00 4.35
491 494 0.096976 CGCATGCTCCACGTTAAAGG 59.903 55.000 17.13 0.00 0.00 3.11
492 495 0.096976 CCGCATGCTCCACGTTAAAG 59.903 55.000 17.13 0.00 0.00 1.85
493 496 1.302383 CCCGCATGCTCCACGTTAAA 61.302 55.000 17.13 0.00 0.00 1.52
494 497 1.743623 CCCGCATGCTCCACGTTAA 60.744 57.895 17.13 0.00 0.00 2.01
495 498 2.125310 CCCGCATGCTCCACGTTA 60.125 61.111 17.13 0.00 0.00 3.18
503 506 2.303549 GACAGTAGAGCCCGCATGCT 62.304 60.000 17.13 0.00 46.37 3.79
504 507 1.884926 GACAGTAGAGCCCGCATGC 60.885 63.158 7.91 7.91 0.00 4.06
505 508 1.032794 TAGACAGTAGAGCCCGCATG 58.967 55.000 0.00 0.00 0.00 4.06
506 509 1.033574 GTAGACAGTAGAGCCCGCAT 58.966 55.000 0.00 0.00 0.00 4.73
507 510 0.323087 TGTAGACAGTAGAGCCCGCA 60.323 55.000 0.00 0.00 0.00 5.69
508 511 1.001158 GATGTAGACAGTAGAGCCCGC 60.001 57.143 0.00 0.00 0.00 6.13
509 512 1.264557 CGATGTAGACAGTAGAGCCCG 59.735 57.143 0.00 0.00 0.00 6.13
510 513 2.291190 GTCGATGTAGACAGTAGAGCCC 59.709 54.545 0.00 0.00 40.65 5.19
511 514 2.943690 TGTCGATGTAGACAGTAGAGCC 59.056 50.000 0.00 0.00 45.18 4.70
520 523 4.208047 GTCTGCATTCATGTCGATGTAGAC 59.792 45.833 25.01 25.01 44.71 2.59
521 524 4.142182 TGTCTGCATTCATGTCGATGTAGA 60.142 41.667 16.55 16.55 34.31 2.59
522 525 4.114794 TGTCTGCATTCATGTCGATGTAG 58.885 43.478 13.77 13.77 0.00 2.74
523 526 4.114794 CTGTCTGCATTCATGTCGATGTA 58.885 43.478 0.00 0.00 0.00 2.29
524 527 2.934553 CTGTCTGCATTCATGTCGATGT 59.065 45.455 0.00 0.00 0.00 3.06
525 528 2.286242 GCTGTCTGCATTCATGTCGATG 60.286 50.000 0.00 0.00 42.31 3.84
526 529 1.938577 GCTGTCTGCATTCATGTCGAT 59.061 47.619 0.00 0.00 42.31 3.59
527 530 1.066645 AGCTGTCTGCATTCATGTCGA 60.067 47.619 4.39 0.00 45.94 4.20
528 531 1.062148 CAGCTGTCTGCATTCATGTCG 59.938 52.381 5.25 0.00 45.94 4.35
529 532 1.400846 CCAGCTGTCTGCATTCATGTC 59.599 52.381 13.81 0.00 45.94 3.06
530 533 1.460504 CCAGCTGTCTGCATTCATGT 58.539 50.000 13.81 0.00 45.94 3.21
531 534 0.100682 GCCAGCTGTCTGCATTCATG 59.899 55.000 13.81 0.00 45.94 3.07
532 535 1.374343 CGCCAGCTGTCTGCATTCAT 61.374 55.000 13.81 0.00 45.94 2.57
533 536 2.036571 CGCCAGCTGTCTGCATTCA 61.037 57.895 13.81 0.00 45.94 2.57
534 537 2.789917 CGCCAGCTGTCTGCATTC 59.210 61.111 13.81 0.00 45.94 2.67
535 538 3.437795 GCGCCAGCTGTCTGCATT 61.438 61.111 13.81 0.00 45.94 3.56
539 542 3.889134 TTCAGGCGCCAGCTGTCTG 62.889 63.158 31.54 16.59 44.37 3.51
540 543 2.964310 ATTCAGGCGCCAGCTGTCT 61.964 57.895 31.54 1.71 44.37 3.41
541 544 2.437359 ATTCAGGCGCCAGCTGTC 60.437 61.111 31.54 0.00 44.37 3.51
542 545 2.749044 CATTCAGGCGCCAGCTGT 60.749 61.111 31.54 3.61 44.37 4.40
543 546 3.515286 CCATTCAGGCGCCAGCTG 61.515 66.667 31.54 19.07 44.37 4.24
544 547 3.272364 TTCCATTCAGGCGCCAGCT 62.272 57.895 31.54 4.59 44.37 4.24
545 548 2.751436 TTCCATTCAGGCGCCAGC 60.751 61.111 31.54 0.33 44.18 4.85
546 549 2.768492 GCTTCCATTCAGGCGCCAG 61.768 63.158 31.54 22.82 37.29 4.85
547 550 2.751436 GCTTCCATTCAGGCGCCA 60.751 61.111 31.54 8.70 37.29 5.69
548 551 2.751436 TGCTTCCATTCAGGCGCC 60.751 61.111 21.89 21.89 37.29 6.53
549 552 2.486966 GTGCTTCCATTCAGGCGC 59.513 61.111 0.00 0.00 37.29 6.53
550 553 2.787249 CGTGCTTCCATTCAGGCG 59.213 61.111 0.00 0.00 37.29 5.52
551 554 2.486966 GCGTGCTTCCATTCAGGC 59.513 61.111 0.00 0.00 37.02 4.85
552 555 2.753966 CCGCGTGCTTCCATTCAGG 61.754 63.158 4.92 0.00 39.47 3.86
553 556 1.699656 CTCCGCGTGCTTCCATTCAG 61.700 60.000 4.92 0.00 0.00 3.02
554 557 1.741401 CTCCGCGTGCTTCCATTCA 60.741 57.895 4.92 0.00 0.00 2.57
555 558 1.741770 ACTCCGCGTGCTTCCATTC 60.742 57.895 4.92 0.00 0.00 2.67
556 559 2.034879 CACTCCGCGTGCTTCCATT 61.035 57.895 4.92 0.00 36.72 3.16
557 560 2.434884 CACTCCGCGTGCTTCCAT 60.435 61.111 4.92 0.00 36.72 3.41
558 561 4.680237 CCACTCCGCGTGCTTCCA 62.680 66.667 4.92 0.00 42.42 3.53
559 562 4.373116 TCCACTCCGCGTGCTTCC 62.373 66.667 4.92 0.00 42.42 3.46
560 563 2.811317 CTCCACTCCGCGTGCTTC 60.811 66.667 4.92 0.00 42.42 3.86
561 564 3.288308 CTCTCCACTCCGCGTGCTT 62.288 63.158 4.92 0.00 42.42 3.91
562 565 3.753434 CTCTCCACTCCGCGTGCT 61.753 66.667 4.92 0.00 42.42 4.40
563 566 4.803426 CCTCTCCACTCCGCGTGC 62.803 72.222 4.92 0.00 42.42 5.34
564 567 2.436087 AAACCTCTCCACTCCGCGTG 62.436 60.000 4.92 0.00 43.41 5.34
565 568 1.755393 AAAACCTCTCCACTCCGCGT 61.755 55.000 4.92 0.00 0.00 6.01
566 569 0.602905 AAAAACCTCTCCACTCCGCG 60.603 55.000 0.00 0.00 0.00 6.46
567 570 2.289506 ACTAAAAACCTCTCCACTCCGC 60.290 50.000 0.00 0.00 0.00 5.54
568 571 3.326747 CACTAAAAACCTCTCCACTCCG 58.673 50.000 0.00 0.00 0.00 4.63
569 572 3.559384 CCCACTAAAAACCTCTCCACTCC 60.559 52.174 0.00 0.00 0.00 3.85
570 573 3.072622 ACCCACTAAAAACCTCTCCACTC 59.927 47.826 0.00 0.00 0.00 3.51
571 574 3.053826 ACCCACTAAAAACCTCTCCACT 58.946 45.455 0.00 0.00 0.00 4.00
572 575 3.181448 TGACCCACTAAAAACCTCTCCAC 60.181 47.826 0.00 0.00 0.00 4.02
573 576 3.050089 TGACCCACTAAAAACCTCTCCA 58.950 45.455 0.00 0.00 0.00 3.86
574 577 3.409570 GTGACCCACTAAAAACCTCTCC 58.590 50.000 0.00 0.00 0.00 3.71
575 578 3.064931 CGTGACCCACTAAAAACCTCTC 58.935 50.000 0.00 0.00 31.34 3.20
576 579 2.701951 TCGTGACCCACTAAAAACCTCT 59.298 45.455 0.00 0.00 31.34 3.69
577 580 3.116079 TCGTGACCCACTAAAAACCTC 57.884 47.619 0.00 0.00 31.34 3.85
578 581 3.408634 CATCGTGACCCACTAAAAACCT 58.591 45.455 0.00 0.00 31.34 3.50
579 582 2.486592 CCATCGTGACCCACTAAAAACC 59.513 50.000 0.00 0.00 31.34 3.27
580 583 3.143728 ACCATCGTGACCCACTAAAAAC 58.856 45.455 0.00 0.00 31.34 2.43
581 584 3.495434 ACCATCGTGACCCACTAAAAA 57.505 42.857 0.00 0.00 31.34 1.94
582 585 3.495434 AACCATCGTGACCCACTAAAA 57.505 42.857 0.00 0.00 31.34 1.52
583 586 3.833650 TCTAACCATCGTGACCCACTAAA 59.166 43.478 0.00 0.00 31.34 1.85
584 587 3.433343 TCTAACCATCGTGACCCACTAA 58.567 45.455 0.00 0.00 31.34 2.24
585 588 3.090210 TCTAACCATCGTGACCCACTA 57.910 47.619 0.00 0.00 31.34 2.74
586 589 1.933021 TCTAACCATCGTGACCCACT 58.067 50.000 0.00 0.00 31.34 4.00
587 590 2.618053 CTTCTAACCATCGTGACCCAC 58.382 52.381 0.00 0.00 0.00 4.61
588 591 1.066430 GCTTCTAACCATCGTGACCCA 60.066 52.381 0.00 0.00 0.00 4.51
589 592 1.653151 GCTTCTAACCATCGTGACCC 58.347 55.000 0.00 0.00 0.00 4.46
590 593 1.278238 CGCTTCTAACCATCGTGACC 58.722 55.000 0.00 0.00 0.00 4.02
591 594 1.135199 TCCGCTTCTAACCATCGTGAC 60.135 52.381 0.00 0.00 0.00 3.67
592 595 1.135199 GTCCGCTTCTAACCATCGTGA 60.135 52.381 0.00 0.00 0.00 4.35
593 596 1.135083 AGTCCGCTTCTAACCATCGTG 60.135 52.381 0.00 0.00 0.00 4.35
594 597 1.183549 AGTCCGCTTCTAACCATCGT 58.816 50.000 0.00 0.00 0.00 3.73
595 598 1.927174 CAAGTCCGCTTCTAACCATCG 59.073 52.381 0.00 0.00 31.49 3.84
596 599 2.093658 TCCAAGTCCGCTTCTAACCATC 60.094 50.000 0.00 0.00 31.49 3.51
597 600 1.906574 TCCAAGTCCGCTTCTAACCAT 59.093 47.619 0.00 0.00 31.49 3.55
598 601 1.344065 TCCAAGTCCGCTTCTAACCA 58.656 50.000 0.00 0.00 31.49 3.67
599 602 2.467566 TTCCAAGTCCGCTTCTAACC 57.532 50.000 0.00 0.00 31.49 2.85
600 603 3.596214 TGATTCCAAGTCCGCTTCTAAC 58.404 45.455 0.00 0.00 31.49 2.34
601 604 3.260884 ACTGATTCCAAGTCCGCTTCTAA 59.739 43.478 0.00 0.00 31.49 2.10
602 605 2.832129 ACTGATTCCAAGTCCGCTTCTA 59.168 45.455 0.00 0.00 31.49 2.10
603 606 1.625818 ACTGATTCCAAGTCCGCTTCT 59.374 47.619 0.00 0.00 31.49 2.85
604 607 1.734465 CACTGATTCCAAGTCCGCTTC 59.266 52.381 0.00 0.00 31.49 3.86
605 608 1.813513 CACTGATTCCAAGTCCGCTT 58.186 50.000 0.00 0.00 34.82 4.68
606 609 0.674895 GCACTGATTCCAAGTCCGCT 60.675 55.000 0.00 0.00 0.00 5.52
607 610 1.796796 GCACTGATTCCAAGTCCGC 59.203 57.895 0.00 0.00 0.00 5.54
608 611 1.970917 GCGCACTGATTCCAAGTCCG 61.971 60.000 0.30 0.00 0.00 4.79
609 612 0.955428 TGCGCACTGATTCCAAGTCC 60.955 55.000 5.66 0.00 0.00 3.85
610 613 0.166814 GTGCGCACTGATTCCAAGTC 59.833 55.000 32.55 1.13 0.00 3.01
611 614 0.250467 AGTGCGCACTGATTCCAAGT 60.250 50.000 40.34 14.15 40.75 3.16
612 615 0.445436 GAGTGCGCACTGATTCCAAG 59.555 55.000 45.07 0.00 42.66 3.61
613 616 0.955428 GGAGTGCGCACTGATTCCAA 60.955 55.000 45.07 0.00 42.66 3.53
614 617 1.375908 GGAGTGCGCACTGATTCCA 60.376 57.895 45.07 0.00 42.66 3.53
615 618 2.109126 GGGAGTGCGCACTGATTCC 61.109 63.158 45.07 36.03 42.66 3.01
616 619 1.375908 TGGGAGTGCGCACTGATTC 60.376 57.895 45.07 29.96 42.66 2.52
617 620 2.749682 TGGGAGTGCGCACTGATT 59.250 55.556 45.07 24.09 42.66 2.57
623 626 1.514678 GATGTTTGTGGGAGTGCGCA 61.515 55.000 5.66 5.66 34.23 6.09
624 627 1.210155 GATGTTTGTGGGAGTGCGC 59.790 57.895 0.00 0.00 0.00 6.09
625 628 0.798776 GAGATGTTTGTGGGAGTGCG 59.201 55.000 0.00 0.00 0.00 5.34
626 629 1.896220 TGAGATGTTTGTGGGAGTGC 58.104 50.000 0.00 0.00 0.00 4.40
627 630 3.189910 CACATGAGATGTTTGTGGGAGTG 59.810 47.826 0.00 0.00 42.70 3.51
628 631 3.181440 ACACATGAGATGTTTGTGGGAGT 60.181 43.478 0.00 0.00 43.88 3.85
629 632 3.415212 ACACATGAGATGTTTGTGGGAG 58.585 45.455 0.00 0.00 43.88 4.30
630 633 3.507162 ACACATGAGATGTTTGTGGGA 57.493 42.857 0.00 0.00 43.88 4.37
631 634 5.188434 AGATACACATGAGATGTTTGTGGG 58.812 41.667 0.00 0.00 43.88 4.61
632 635 6.036844 CAGAGATACACATGAGATGTTTGTGG 59.963 42.308 0.00 0.00 43.88 4.17
633 636 6.815142 TCAGAGATACACATGAGATGTTTGTG 59.185 38.462 0.00 5.63 42.70 3.33
634 637 6.939622 TCAGAGATACACATGAGATGTTTGT 58.060 36.000 0.00 0.00 42.70 2.83
635 638 8.434733 AATCAGAGATACACATGAGATGTTTG 57.565 34.615 0.00 0.00 42.70 2.93
636 639 8.890718 CAAATCAGAGATACACATGAGATGTTT 58.109 33.333 0.00 0.00 42.70 2.83
637 640 7.012138 GCAAATCAGAGATACACATGAGATGTT 59.988 37.037 0.00 0.00 42.70 2.71
638 641 6.482641 GCAAATCAGAGATACACATGAGATGT 59.517 38.462 0.00 0.00 46.22 3.06
639 642 6.346678 CGCAAATCAGAGATACACATGAGATG 60.347 42.308 0.00 0.00 0.00 2.90
640 643 5.695363 CGCAAATCAGAGATACACATGAGAT 59.305 40.000 0.00 0.00 0.00 2.75
641 644 5.045872 CGCAAATCAGAGATACACATGAGA 58.954 41.667 0.00 0.00 0.00 3.27
642 645 5.045872 TCGCAAATCAGAGATACACATGAG 58.954 41.667 0.00 0.00 0.00 2.90
643 646 5.009854 TCGCAAATCAGAGATACACATGA 57.990 39.130 0.00 0.00 0.00 3.07
644 647 5.723492 TTCGCAAATCAGAGATACACATG 57.277 39.130 0.00 0.00 0.00 3.21
645 648 5.220739 GCTTTCGCAAATCAGAGATACACAT 60.221 40.000 0.00 0.00 35.78 3.21
646 649 4.093408 GCTTTCGCAAATCAGAGATACACA 59.907 41.667 0.00 0.00 35.78 3.72
647 650 4.093408 TGCTTTCGCAAATCAGAGATACAC 59.907 41.667 0.00 0.00 44.62 2.90
648 651 4.252878 TGCTTTCGCAAATCAGAGATACA 58.747 39.130 0.00 0.00 44.62 2.29
649 652 4.864916 TGCTTTCGCAAATCAGAGATAC 57.135 40.909 0.00 0.00 44.62 2.24
661 664 1.135660 TCAAACGTGTTTGCTTTCGCA 60.136 42.857 18.26 0.00 46.92 5.10
662 665 1.540407 TCAAACGTGTTTGCTTTCGC 58.460 45.000 18.26 0.00 46.92 4.70
663 666 5.662815 GCATATTCAAACGTGTTTGCTTTCG 60.663 40.000 18.26 9.21 46.92 3.46
664 667 5.402270 AGCATATTCAAACGTGTTTGCTTTC 59.598 36.000 18.26 7.17 46.92 2.62
665 668 5.288804 AGCATATTCAAACGTGTTTGCTTT 58.711 33.333 18.26 9.30 46.92 3.51
666 669 4.870363 AGCATATTCAAACGTGTTTGCTT 58.130 34.783 18.26 11.32 46.92 3.91
667 670 4.503741 AGCATATTCAAACGTGTTTGCT 57.496 36.364 18.26 10.29 46.92 3.91
668 671 5.799936 ACATAGCATATTCAAACGTGTTTGC 59.200 36.000 18.26 8.34 46.92 3.68
670 673 8.061857 CGATACATAGCATATTCAAACGTGTTT 58.938 33.333 0.00 0.00 0.00 2.83
671 674 7.436970 TCGATACATAGCATATTCAAACGTGTT 59.563 33.333 0.00 0.00 0.00 3.32
672 675 6.921307 TCGATACATAGCATATTCAAACGTGT 59.079 34.615 0.00 0.00 0.00 4.49
673 676 7.333288 TCGATACATAGCATATTCAAACGTG 57.667 36.000 0.00 0.00 0.00 4.49
674 677 9.073368 GTATCGATACATAGCATATTCAAACGT 57.927 33.333 26.86 0.00 33.52 3.99
675 678 9.072294 TGTATCGATACATAGCATATTCAAACG 57.928 33.333 29.79 0.00 38.28 3.60
677 680 9.586435 CCTGTATCGATACATAGCATATTCAAA 57.414 33.333 32.46 9.83 41.92 2.69
678 681 8.966868 TCCTGTATCGATACATAGCATATTCAA 58.033 33.333 32.46 10.22 41.92 2.69
679 682 8.406297 GTCCTGTATCGATACATAGCATATTCA 58.594 37.037 32.46 10.45 41.92 2.57
680 683 7.863375 GGTCCTGTATCGATACATAGCATATTC 59.137 40.741 32.46 16.93 41.92 1.75
681 684 7.468768 CGGTCCTGTATCGATACATAGCATATT 60.469 40.741 32.46 0.00 41.92 1.28
682 685 6.017026 CGGTCCTGTATCGATACATAGCATAT 60.017 42.308 32.46 0.00 41.92 1.78
683 686 5.296035 CGGTCCTGTATCGATACATAGCATA 59.704 44.000 32.46 15.12 41.92 3.14
684 687 4.096532 CGGTCCTGTATCGATACATAGCAT 59.903 45.833 32.46 0.00 41.92 3.79
685 688 3.439129 CGGTCCTGTATCGATACATAGCA 59.561 47.826 32.46 16.96 41.92 3.49
686 689 3.731264 GCGGTCCTGTATCGATACATAGC 60.731 52.174 32.46 28.37 41.92 2.97
687 690 3.485381 CGCGGTCCTGTATCGATACATAG 60.485 52.174 32.46 26.31 41.92 2.23
688 691 2.417586 CGCGGTCCTGTATCGATACATA 59.582 50.000 32.46 22.59 41.92 2.29
689 692 1.199327 CGCGGTCCTGTATCGATACAT 59.801 52.381 32.46 0.00 41.92 2.29
690 693 0.589708 CGCGGTCCTGTATCGATACA 59.410 55.000 30.84 30.84 40.69 2.29
691 694 0.590195 ACGCGGTCCTGTATCGATAC 59.410 55.000 25.48 25.48 31.47 2.24
692 695 1.002142 CAACGCGGTCCTGTATCGATA 60.002 52.381 12.47 0.00 31.47 2.92
693 696 0.248907 CAACGCGGTCCTGTATCGAT 60.249 55.000 12.47 2.16 31.47 3.59
694 697 1.138036 CAACGCGGTCCTGTATCGA 59.862 57.895 12.47 0.00 31.47 3.59
695 698 0.457166 TTCAACGCGGTCCTGTATCG 60.457 55.000 12.47 0.00 33.70 2.92
696 699 1.659098 CTTTCAACGCGGTCCTGTATC 59.341 52.381 12.47 0.00 0.00 2.24
697 700 1.674817 CCTTTCAACGCGGTCCTGTAT 60.675 52.381 12.47 0.00 0.00 2.29
698 701 0.320073 CCTTTCAACGCGGTCCTGTA 60.320 55.000 12.47 0.00 0.00 2.74
699 702 1.597027 CCTTTCAACGCGGTCCTGT 60.597 57.895 12.47 0.00 0.00 4.00
700 703 1.597027 ACCTTTCAACGCGGTCCTG 60.597 57.895 12.47 1.86 0.00 3.86
701 704 1.597027 CACCTTTCAACGCGGTCCT 60.597 57.895 12.47 0.00 0.00 3.85
702 705 2.613506 CCACCTTTCAACGCGGTCC 61.614 63.158 12.47 0.00 0.00 4.46
703 706 0.600782 TACCACCTTTCAACGCGGTC 60.601 55.000 12.47 0.00 0.00 4.79
704 707 0.881600 GTACCACCTTTCAACGCGGT 60.882 55.000 12.47 0.00 0.00 5.68
705 708 1.864176 GTACCACCTTTCAACGCGG 59.136 57.895 12.47 0.00 0.00 6.46
706 709 1.489824 CGTACCACCTTTCAACGCG 59.510 57.895 3.53 3.53 0.00 6.01
707 710 1.864176 CCGTACCACCTTTCAACGC 59.136 57.895 0.00 0.00 32.43 4.84
708 711 1.571215 GGCCGTACCACCTTTCAACG 61.571 60.000 0.00 0.00 38.86 4.10
709 712 0.535553 TGGCCGTACCACCTTTCAAC 60.536 55.000 0.00 0.00 46.36 3.18
710 713 1.837789 TGGCCGTACCACCTTTCAA 59.162 52.632 0.00 0.00 46.36 2.69
711 714 3.564775 TGGCCGTACCACCTTTCA 58.435 55.556 0.00 0.00 46.36 2.69
719 722 2.340453 TAGATCGCGTTGGCCGTACC 62.340 60.000 5.77 0.00 39.32 3.34
720 723 1.064621 TAGATCGCGTTGGCCGTAC 59.935 57.895 5.77 0.00 39.32 3.67
721 724 1.064621 GTAGATCGCGTTGGCCGTA 59.935 57.895 5.77 0.00 39.32 4.02
722 725 2.202703 GTAGATCGCGTTGGCCGT 60.203 61.111 5.77 0.00 39.32 5.68
723 726 1.807981 TTGTAGATCGCGTTGGCCG 60.808 57.895 5.77 0.00 40.40 6.13
724 727 1.713830 GTTGTAGATCGCGTTGGCC 59.286 57.895 5.77 0.00 35.02 5.36
725 728 1.343821 CGTTGTAGATCGCGTTGGC 59.656 57.895 5.77 0.00 0.00 4.52
726 729 0.734942 ACCGTTGTAGATCGCGTTGG 60.735 55.000 5.77 0.00 0.00 3.77
727 730 1.065358 AACCGTTGTAGATCGCGTTG 58.935 50.000 5.77 0.00 0.00 4.10
728 731 1.065358 CAACCGTTGTAGATCGCGTT 58.935 50.000 5.77 0.00 0.00 4.84
729 732 1.349259 GCAACCGTTGTAGATCGCGT 61.349 55.000 12.77 0.00 0.00 6.01
730 733 1.343821 GCAACCGTTGTAGATCGCG 59.656 57.895 12.77 0.00 0.00 5.87
731 734 1.343821 CGCAACCGTTGTAGATCGC 59.656 57.895 12.77 0.00 0.00 4.58
732 735 1.418342 CCCGCAACCGTTGTAGATCG 61.418 60.000 12.77 7.10 0.00 3.69
733 736 0.108520 TCCCGCAACCGTTGTAGATC 60.109 55.000 12.77 0.00 0.00 2.75
734 737 0.108329 CTCCCGCAACCGTTGTAGAT 60.108 55.000 12.77 0.00 0.00 1.98
735 738 1.290955 CTCCCGCAACCGTTGTAGA 59.709 57.895 12.77 6.51 0.00 2.59
736 739 0.601841 AACTCCCGCAACCGTTGTAG 60.602 55.000 12.77 7.37 0.00 2.74
737 740 0.179051 AAACTCCCGCAACCGTTGTA 60.179 50.000 12.77 0.00 0.00 2.41
738 741 1.441732 GAAACTCCCGCAACCGTTGT 61.442 55.000 12.77 0.00 0.00 3.32
739 742 1.281656 GAAACTCCCGCAACCGTTG 59.718 57.895 6.91 6.91 0.00 4.10
740 743 0.536460 ATGAAACTCCCGCAACCGTT 60.536 50.000 0.00 0.00 0.00 4.44
741 744 1.072505 ATGAAACTCCCGCAACCGT 59.927 52.632 0.00 0.00 0.00 4.83
742 745 1.501741 CATGAAACTCCCGCAACCG 59.498 57.895 0.00 0.00 0.00 4.44
743 746 0.893727 ACCATGAAACTCCCGCAACC 60.894 55.000 0.00 0.00 0.00 3.77
744 747 0.521735 GACCATGAAACTCCCGCAAC 59.478 55.000 0.00 0.00 0.00 4.17
745 748 0.953471 CGACCATGAAACTCCCGCAA 60.953 55.000 0.00 0.00 0.00 4.85
746 749 1.375396 CGACCATGAAACTCCCGCA 60.375 57.895 0.00 0.00 0.00 5.69
747 750 2.106683 CCGACCATGAAACTCCCGC 61.107 63.158 0.00 0.00 0.00 6.13
748 751 2.106683 GCCGACCATGAAACTCCCG 61.107 63.158 0.00 0.00 0.00 5.14
749 752 2.106683 CGCCGACCATGAAACTCCC 61.107 63.158 0.00 0.00 0.00 4.30
750 753 0.953960 AACGCCGACCATGAAACTCC 60.954 55.000 0.00 0.00 0.00 3.85
751 754 0.165944 CAACGCCGACCATGAAACTC 59.834 55.000 0.00 0.00 0.00 3.01
752 755 1.234615 CCAACGCCGACCATGAAACT 61.235 55.000 0.00 0.00 0.00 2.66
753 756 1.209127 CCAACGCCGACCATGAAAC 59.791 57.895 0.00 0.00 0.00 2.78
754 757 1.969064 CCCAACGCCGACCATGAAA 60.969 57.895 0.00 0.00 0.00 2.69
755 758 2.191786 ATCCCAACGCCGACCATGAA 62.192 55.000 0.00 0.00 0.00 2.57
756 759 2.665089 ATCCCAACGCCGACCATGA 61.665 57.895 0.00 0.00 0.00 3.07
757 760 2.124736 ATCCCAACGCCGACCATG 60.125 61.111 0.00 0.00 0.00 3.66
758 761 2.124736 CATCCCAACGCCGACCAT 60.125 61.111 0.00 0.00 0.00 3.55
770 773 0.828343 AGTAGTAGCGAGGGCATCCC 60.828 60.000 0.00 0.00 45.90 3.85
771 774 0.599060 GAGTAGTAGCGAGGGCATCC 59.401 60.000 0.00 0.00 43.41 3.51
772 775 0.238817 CGAGTAGTAGCGAGGGCATC 59.761 60.000 0.00 0.00 43.41 3.91
773 776 0.465824 ACGAGTAGTAGCGAGGGCAT 60.466 55.000 0.00 0.00 43.41 4.40
774 777 0.178767 TACGAGTAGTAGCGAGGGCA 59.821 55.000 0.00 0.00 43.41 5.36
778 781 1.923204 ACGTGTACGAGTAGTAGCGAG 59.077 52.381 11.79 0.00 43.02 5.03
781 784 3.859961 TCTGTACGTGTACGAGTAGTAGC 59.140 47.826 11.79 0.00 43.02 3.58
828 832 3.564027 CGGATTTGCGCGAGGACC 61.564 66.667 12.10 4.92 0.00 4.46
837 849 4.366586 GGGTACTAGTACTTCGGATTTGC 58.633 47.826 27.71 10.55 36.36 3.68
840 852 3.117888 TCGGGGTACTAGTACTTCGGATT 60.118 47.826 29.36 0.00 36.36 3.01
845 857 2.032675 CGCTTCGGGGTACTAGTACTTC 59.967 54.545 27.71 20.40 36.36 3.01
846 858 2.019984 CGCTTCGGGGTACTAGTACTT 58.980 52.381 27.71 0.00 36.36 2.24
847 859 1.210478 TCGCTTCGGGGTACTAGTACT 59.790 52.381 27.71 0.00 36.36 2.73
848 860 1.668419 TCGCTTCGGGGTACTAGTAC 58.332 55.000 22.53 22.53 35.40 2.73
849 861 2.017049 GTTCGCTTCGGGGTACTAGTA 58.983 52.381 0.00 0.00 0.00 1.82
850 862 0.813821 GTTCGCTTCGGGGTACTAGT 59.186 55.000 0.00 0.00 0.00 2.57
851 863 0.248377 CGTTCGCTTCGGGGTACTAG 60.248 60.000 0.00 0.00 0.00 2.57
862 874 0.591659 GGAAAAGGCTTCGTTCGCTT 59.408 50.000 0.00 0.00 0.00 4.68
879 891 3.160585 CTGGTGGTTGGCTCTGGA 58.839 61.111 0.00 0.00 0.00 3.86
881 893 2.113774 TGCTGGTGGTTGGCTCTG 59.886 61.111 0.00 0.00 0.00 3.35
883 895 0.955919 GTAGTGCTGGTGGTTGGCTC 60.956 60.000 0.00 0.00 0.00 4.70
884 896 1.073199 GTAGTGCTGGTGGTTGGCT 59.927 57.895 0.00 0.00 0.00 4.75
885 897 1.228124 TGTAGTGCTGGTGGTTGGC 60.228 57.895 0.00 0.00 0.00 4.52
1013 1025 0.797249 CTTCATGCGCTTCTTGCTGC 60.797 55.000 9.73 0.00 40.11 5.25
1044 1056 4.069232 CGAGGGACGGCAGCAGAA 62.069 66.667 0.00 0.00 38.46 3.02
1189 1201 2.630889 TCTTCCTCCTCCACAGTCAT 57.369 50.000 0.00 0.00 0.00 3.06
1192 1204 1.974236 CACTTCTTCCTCCTCCACAGT 59.026 52.381 0.00 0.00 0.00 3.55
1204 1216 2.810852 CCTTCACCTTCAGCACTTCTTC 59.189 50.000 0.00 0.00 0.00 2.87
1368 1380 2.490217 GAGACAGCGCGCTTCCTA 59.510 61.111 34.58 0.00 0.00 2.94
1432 1444 3.152400 GGACCGGACGCCATAGGT 61.152 66.667 9.46 0.00 40.11 3.08
1785 1886 1.059098 TGAAGCACTCCATGGACACT 58.941 50.000 11.44 5.42 0.00 3.55
1855 1956 4.514401 CCACACCTAAACAGGGATTAGTC 58.486 47.826 0.00 0.00 0.00 2.59
1922 2025 1.689352 CGTTACATCACCGCGAACCC 61.689 60.000 8.23 0.00 0.00 4.11
2026 2140 4.250464 ACAGATCGGCAAAATAGAACGAA 58.750 39.130 0.00 0.00 37.11 3.85
2032 2146 6.189677 TGGTAAAACAGATCGGCAAAATAG 57.810 37.500 0.00 0.00 0.00 1.73
2075 2191 6.265649 GTGGATACCGTATGCATATAGGATCT 59.734 42.308 27.52 15.96 38.77 2.75
2082 2198 8.478775 ACATATAGTGGATACCGTATGCATAT 57.521 34.615 14.94 14.28 38.77 1.78
2100 2220 7.255242 CCAAAGGAAATGGCAGTGTACATATAG 60.255 40.741 0.00 0.00 0.00 1.31
2103 2223 4.704540 CCAAAGGAAATGGCAGTGTACATA 59.295 41.667 0.00 0.00 0.00 2.29
2104 2224 3.511146 CCAAAGGAAATGGCAGTGTACAT 59.489 43.478 0.00 0.00 0.00 2.29
2105 2225 2.890311 CCAAAGGAAATGGCAGTGTACA 59.110 45.455 0.00 0.00 0.00 2.90
2106 2226 2.231235 CCCAAAGGAAATGGCAGTGTAC 59.769 50.000 0.00 0.00 36.58 2.90
2109 2229 1.341080 ACCCAAAGGAAATGGCAGTG 58.659 50.000 0.00 0.00 36.58 3.66
2196 2318 0.250424 TCGAGACAGTACGGGTCACA 60.250 55.000 18.73 3.84 37.74 3.58
2204 2326 4.725556 TTTGCAATGTTCGAGACAGTAC 57.274 40.909 0.00 0.00 42.62 2.73
2237 2359 0.107456 ACTGAGCACTGGACCACTTG 59.893 55.000 0.00 0.00 0.00 3.16
2238 2360 0.839946 AACTGAGCACTGGACCACTT 59.160 50.000 0.00 0.00 0.00 3.16
2290 2412 1.447489 CCTCTCAAGCCTGACGCAG 60.447 63.158 0.52 0.52 41.38 5.18
2383 2512 1.201647 TGGATGTTCCTCTCGTTCGAC 59.798 52.381 0.00 0.00 37.46 4.20
2506 2646 3.597728 TTTTTGACACCGGCGGGC 61.598 61.111 31.78 19.09 36.48 6.13
2529 2670 2.279517 CTCCTCGCGGGGAAATCG 60.280 66.667 30.77 13.97 34.66 3.34
2530 2671 2.109181 CCTCCTCGCGGGGAAATC 59.891 66.667 30.77 0.00 34.66 2.17
2536 2677 3.532155 CTTCTCCCTCCTCGCGGG 61.532 72.222 6.13 0.59 43.38 6.13
2539 2680 2.802106 CGTCTTCTCCCTCCTCGC 59.198 66.667 0.00 0.00 0.00 5.03
2542 2683 3.453679 GCGCGTCTTCTCCCTCCT 61.454 66.667 8.43 0.00 0.00 3.69
2548 2689 3.832171 CACAGCGCGCGTCTTCTC 61.832 66.667 32.35 13.54 0.00 2.87
2549 2690 4.342987 TCACAGCGCGCGTCTTCT 62.343 61.111 32.35 17.09 0.00 2.85
2550 2691 3.832171 CTCACAGCGCGCGTCTTC 61.832 66.667 32.35 14.78 0.00 2.87
2551 2692 4.342987 TCTCACAGCGCGCGTCTT 62.343 61.111 32.35 14.77 0.00 3.01
2552 2693 4.767841 CTCTCACAGCGCGCGTCT 62.768 66.667 32.35 24.80 0.00 4.18
2553 2694 4.760840 TCTCTCACAGCGCGCGTC 62.761 66.667 32.35 22.88 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.