Multiple sequence alignment - TraesCS3D01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G312400 chr3D 100.000 2447 0 0 1 2447 426923735 426926181 0.000000e+00 4519.0
1 TraesCS3D01G312400 chr3D 98.113 53 1 0 1 53 578864019 578864071 2.590000e-15 93.5
2 TraesCS3D01G312400 chr3D 96.296 54 2 0 1 54 597136089 597136142 3.350000e-14 89.8
3 TraesCS3D01G312400 chr3D 93.333 60 2 2 1 58 58510851 58510792 1.210000e-13 87.9
4 TraesCS3D01G312400 chr3D 93.103 58 4 0 1 58 579703184 579703127 4.340000e-13 86.1
5 TraesCS3D01G312400 chr3A 87.802 1902 90 65 181 2020 561056119 561054298 0.000000e+00 2097.0
6 TraesCS3D01G312400 chr3A 84.577 201 10 5 2037 2223 561054313 561054120 1.930000e-41 180.0
7 TraesCS3D01G312400 chr3A 100.000 29 0 0 2236 2264 561054090 561054062 1.000000e-03 54.7
8 TraesCS3D01G312400 chr3B 83.228 948 38 49 138 1046 556634379 556635244 0.000000e+00 758.0
9 TraesCS3D01G312400 chr3B 86.667 195 10 4 2034 2214 556641389 556641581 4.130000e-48 202.0
10 TraesCS3D01G312400 chr3B 88.889 153 9 4 1074 1224 556635307 556635453 5.370000e-42 182.0
11 TraesCS3D01G312400 chr3B 97.403 77 2 0 1944 2020 556641331 556641407 5.490000e-27 132.0
12 TraesCS3D01G312400 chr3B 91.111 90 8 0 1372 1461 556640919 556641008 3.300000e-24 122.0
13 TraesCS3D01G312400 chr3B 80.800 125 11 8 1220 1331 556640792 556640916 4.340000e-13 86.1
14 TraesCS3D01G312400 chr7D 98.077 52 1 0 1 52 522390416 522390365 9.320000e-15 91.6
15 TraesCS3D01G312400 chr6D 98.077 52 1 0 1 52 109839872 109839821 9.320000e-15 91.6
16 TraesCS3D01G312400 chr6D 94.643 56 3 0 4 59 26627545 26627490 1.210000e-13 87.9
17 TraesCS3D01G312400 chr5D 96.364 55 1 1 1 54 543363844 543363898 3.350000e-14 89.8
18 TraesCS3D01G312400 chr5D 93.220 59 2 2 1 58 247296250 247296307 4.340000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G312400 chr3D 426923735 426926181 2446 False 4519.000000 4519 100.0000 1 2447 1 chr3D.!!$F1 2446
1 TraesCS3D01G312400 chr3A 561054062 561056119 2057 True 777.233333 2097 90.7930 181 2264 3 chr3A.!!$R1 2083
2 TraesCS3D01G312400 chr3B 556634379 556635453 1074 False 470.000000 758 86.0585 138 1224 2 chr3B.!!$F1 1086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 585 0.03392 TGGCGCATTAGCATCGATCT 59.966 50.0 10.83 0.0 42.27 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 2502 0.106918 GGTGGTGGTTGTGGTCTCAA 60.107 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.953648 ACAAAAGACCCTTACAAACCGG 59.046 45.455 0.00 0.00 0.00 5.28
22 23 2.281539 AAAGACCCTTACAAACCGGG 57.718 50.000 6.32 0.00 43.79 5.73
23 24 0.402887 AAGACCCTTACAAACCGGGG 59.597 55.000 6.32 0.00 42.44 5.73
24 25 4.006837 ACCCTTACAAACCGGGGT 57.993 55.556 6.32 3.30 46.28 4.95
27 28 2.583024 CCCTTACAAACCGGGGTAAA 57.417 50.000 6.32 0.00 34.22 2.01
28 29 2.874014 CCCTTACAAACCGGGGTAAAA 58.126 47.619 6.32 0.00 34.22 1.52
29 30 2.821378 CCCTTACAAACCGGGGTAAAAG 59.179 50.000 6.32 3.70 34.22 2.27
30 31 2.229543 CCTTACAAACCGGGGTAAAAGC 59.770 50.000 6.32 0.00 0.00 3.51
31 32 1.908344 TACAAACCGGGGTAAAAGCC 58.092 50.000 6.32 0.00 34.31 4.35
40 41 2.320681 GGGTAAAAGCCCCTTTTCCT 57.679 50.000 6.25 0.00 41.88 3.36
41 42 3.461378 GGGTAAAAGCCCCTTTTCCTA 57.539 47.619 6.25 0.00 41.88 2.94
42 43 3.094572 GGGTAAAAGCCCCTTTTCCTAC 58.905 50.000 6.25 0.98 41.88 3.18
43 44 3.245514 GGGTAAAAGCCCCTTTTCCTACT 60.246 47.826 6.25 0.00 41.88 2.57
44 45 4.018141 GGGTAAAAGCCCCTTTTCCTACTA 60.018 45.833 6.25 0.00 41.88 1.82
45 46 5.191426 GGTAAAAGCCCCTTTTCCTACTAG 58.809 45.833 6.25 0.00 41.88 2.57
46 47 5.280882 GGTAAAAGCCCCTTTTCCTACTAGT 60.281 44.000 0.00 0.00 41.88 2.57
47 48 4.302559 AAAGCCCCTTTTCCTACTAGTG 57.697 45.455 5.39 0.00 28.27 2.74
48 49 2.917205 AGCCCCTTTTCCTACTAGTGT 58.083 47.619 5.39 0.00 0.00 3.55
49 50 3.257578 AGCCCCTTTTCCTACTAGTGTT 58.742 45.455 5.39 0.00 0.00 3.32
50 51 3.263681 AGCCCCTTTTCCTACTAGTGTTC 59.736 47.826 5.39 0.00 0.00 3.18
51 52 3.263681 GCCCCTTTTCCTACTAGTGTTCT 59.736 47.826 5.39 0.00 0.00 3.01
52 53 4.623409 GCCCCTTTTCCTACTAGTGTTCTC 60.623 50.000 5.39 0.00 0.00 2.87
53 54 4.530946 CCCCTTTTCCTACTAGTGTTCTCA 59.469 45.833 5.39 0.00 0.00 3.27
54 55 5.480205 CCCTTTTCCTACTAGTGTTCTCAC 58.520 45.833 5.39 0.00 44.15 3.51
55 56 5.011738 CCCTTTTCCTACTAGTGTTCTCACA 59.988 44.000 5.39 0.00 46.01 3.58
56 57 6.463897 CCCTTTTCCTACTAGTGTTCTCACAA 60.464 42.308 5.39 0.00 46.01 3.33
57 58 6.990349 CCTTTTCCTACTAGTGTTCTCACAAA 59.010 38.462 5.39 0.00 46.01 2.83
58 59 7.171678 CCTTTTCCTACTAGTGTTCTCACAAAG 59.828 40.741 5.39 3.55 46.01 2.77
59 60 6.726490 TTCCTACTAGTGTTCTCACAAAGT 57.274 37.500 5.39 9.83 46.01 2.66
60 61 6.726490 TCCTACTAGTGTTCTCACAAAGTT 57.274 37.500 5.39 0.00 46.01 2.66
61 62 7.120923 TCCTACTAGTGTTCTCACAAAGTTT 57.879 36.000 5.39 0.00 46.01 2.66
62 63 7.208080 TCCTACTAGTGTTCTCACAAAGTTTC 58.792 38.462 5.39 0.00 46.01 2.78
63 64 5.968387 ACTAGTGTTCTCACAAAGTTTCG 57.032 39.130 0.00 0.00 46.01 3.46
64 65 4.809426 ACTAGTGTTCTCACAAAGTTTCGG 59.191 41.667 0.00 0.00 46.01 4.30
65 66 3.869065 AGTGTTCTCACAAAGTTTCGGA 58.131 40.909 1.36 0.00 46.01 4.55
66 67 4.258543 AGTGTTCTCACAAAGTTTCGGAA 58.741 39.130 1.36 0.00 46.01 4.30
67 68 4.881850 AGTGTTCTCACAAAGTTTCGGAAT 59.118 37.500 0.00 0.00 46.01 3.01
68 69 5.357032 AGTGTTCTCACAAAGTTTCGGAATT 59.643 36.000 0.00 0.00 46.01 2.17
69 70 6.033966 GTGTTCTCACAAAGTTTCGGAATTT 58.966 36.000 0.00 0.00 43.37 1.82
70 71 6.530181 GTGTTCTCACAAAGTTTCGGAATTTT 59.470 34.615 0.00 0.00 43.37 1.82
71 72 7.698970 GTGTTCTCACAAAGTTTCGGAATTTTA 59.301 33.333 0.00 0.00 43.37 1.52
72 73 8.244802 TGTTCTCACAAAGTTTCGGAATTTTAA 58.755 29.630 0.00 0.00 0.00 1.52
73 74 9.078753 GTTCTCACAAAGTTTCGGAATTTTAAA 57.921 29.630 0.00 0.00 0.00 1.52
74 75 9.640963 TTCTCACAAAGTTTCGGAATTTTAAAA 57.359 25.926 2.51 2.51 0.00 1.52
75 76 9.640963 TCTCACAAAGTTTCGGAATTTTAAAAA 57.359 25.926 4.44 0.00 0.00 1.94
99 100 7.801547 AATGCTTTGATATGTTTTTCTCACG 57.198 32.000 0.00 0.00 0.00 4.35
100 101 6.312399 TGCTTTGATATGTTTTTCTCACGT 57.688 33.333 0.00 0.00 0.00 4.49
101 102 6.142139 TGCTTTGATATGTTTTTCTCACGTG 58.858 36.000 9.94 9.94 0.00 4.49
102 103 5.569059 GCTTTGATATGTTTTTCTCACGTGG 59.431 40.000 17.00 6.71 0.00 4.94
103 104 5.621197 TTGATATGTTTTTCTCACGTGGG 57.379 39.130 17.00 13.66 0.00 4.61
104 105 4.647611 TGATATGTTTTTCTCACGTGGGT 58.352 39.130 16.53 0.00 0.00 4.51
105 106 4.454161 TGATATGTTTTTCTCACGTGGGTG 59.546 41.667 16.53 6.55 45.78 4.61
106 107 0.736053 TGTTTTTCTCACGTGGGTGC 59.264 50.000 16.53 3.16 44.03 5.01
107 108 0.736053 GTTTTTCTCACGTGGGTGCA 59.264 50.000 16.53 0.00 44.03 4.57
108 109 1.336755 GTTTTTCTCACGTGGGTGCAT 59.663 47.619 16.53 0.00 44.03 3.96
109 110 1.234821 TTTTCTCACGTGGGTGCATC 58.765 50.000 16.53 0.00 44.03 3.91
110 111 0.107643 TTTCTCACGTGGGTGCATCA 59.892 50.000 16.53 0.00 44.03 3.07
111 112 0.107643 TTCTCACGTGGGTGCATCAA 59.892 50.000 16.53 0.00 44.03 2.57
112 113 0.320683 TCTCACGTGGGTGCATCAAG 60.321 55.000 16.53 1.81 44.03 3.02
113 114 1.915614 CTCACGTGGGTGCATCAAGC 61.916 60.000 17.00 0.00 44.03 4.01
114 115 1.968017 CACGTGGGTGCATCAAGCT 60.968 57.895 7.95 0.00 45.94 3.74
115 116 1.968017 ACGTGGGTGCATCAAGCTG 60.968 57.895 0.00 0.00 45.94 4.24
116 117 2.693762 CGTGGGTGCATCAAGCTGG 61.694 63.158 0.00 0.00 45.94 4.85
117 118 1.604593 GTGGGTGCATCAAGCTGGT 60.605 57.895 0.00 0.00 45.94 4.00
118 119 1.604308 TGGGTGCATCAAGCTGGTG 60.604 57.895 0.00 0.00 45.94 4.17
119 120 1.604593 GGGTGCATCAAGCTGGTGT 60.605 57.895 0.00 0.00 45.94 4.16
120 121 1.582968 GGTGCATCAAGCTGGTGTG 59.417 57.895 0.00 0.00 45.94 3.82
121 122 1.174712 GGTGCATCAAGCTGGTGTGT 61.175 55.000 0.00 0.00 45.94 3.72
122 123 1.522668 GTGCATCAAGCTGGTGTGTA 58.477 50.000 0.00 0.00 45.94 2.90
123 124 1.466167 GTGCATCAAGCTGGTGTGTAG 59.534 52.381 0.00 0.00 45.94 2.74
124 125 1.347378 TGCATCAAGCTGGTGTGTAGA 59.653 47.619 0.00 0.00 45.94 2.59
125 126 2.224499 TGCATCAAGCTGGTGTGTAGAA 60.224 45.455 0.00 0.00 45.94 2.10
126 127 2.813754 GCATCAAGCTGGTGTGTAGAAA 59.186 45.455 0.00 0.00 41.15 2.52
127 128 3.253188 GCATCAAGCTGGTGTGTAGAAAA 59.747 43.478 0.00 0.00 41.15 2.29
128 129 4.261572 GCATCAAGCTGGTGTGTAGAAAAA 60.262 41.667 0.00 0.00 41.15 1.94
129 130 5.565439 GCATCAAGCTGGTGTGTAGAAAAAT 60.565 40.000 0.00 0.00 41.15 1.82
130 131 5.689383 TCAAGCTGGTGTGTAGAAAAATC 57.311 39.130 0.00 0.00 0.00 2.17
131 132 5.129634 TCAAGCTGGTGTGTAGAAAAATCA 58.870 37.500 0.00 0.00 0.00 2.57
132 133 5.008613 TCAAGCTGGTGTGTAGAAAAATCAC 59.991 40.000 0.00 0.00 0.00 3.06
133 134 4.460263 AGCTGGTGTGTAGAAAAATCACA 58.540 39.130 0.00 0.00 39.31 3.58
158 159 5.437060 TCTTATCTGAACCCTTATGTTGGC 58.563 41.667 0.00 0.00 0.00 4.52
163 164 3.352648 TGAACCCTTATGTTGGCTTAGC 58.647 45.455 0.00 0.00 0.00 3.09
168 169 3.118261 CCCTTATGTTGGCTTAGCTCTCA 60.118 47.826 3.59 1.37 0.00 3.27
224 225 1.228063 CAGTGTGCCTGCTGGAAGT 60.228 57.895 14.77 0.00 35.30 3.01
225 226 0.820891 CAGTGTGCCTGCTGGAAGTT 60.821 55.000 14.77 0.00 35.30 2.66
227 228 0.819259 GTGTGCCTGCTGGAAGTTCA 60.819 55.000 14.77 0.00 35.30 3.18
228 229 0.535780 TGTGCCTGCTGGAAGTTCAG 60.536 55.000 14.77 1.91 35.30 3.02
243 244 4.065321 AGTTCAGCATAGCATAGACACC 57.935 45.455 0.00 0.00 0.00 4.16
263 264 2.418884 CCGAAAACTCTAGAGAAGGGCC 60.419 54.545 26.57 0.00 0.00 5.80
270 271 1.292242 TCTAGAGAAGGGCCATCTGGT 59.708 52.381 17.32 5.75 37.57 4.00
289 290 2.477375 GGTTTGCTACGAATCGTGTGAA 59.523 45.455 19.42 2.78 41.39 3.18
290 291 3.423123 GGTTTGCTACGAATCGTGTGAAG 60.423 47.826 19.42 8.74 41.39 3.02
291 292 2.717580 TGCTACGAATCGTGTGAAGT 57.282 45.000 19.42 0.00 41.39 3.01
292 293 2.324860 TGCTACGAATCGTGTGAAGTG 58.675 47.619 19.42 1.25 41.39 3.16
308 309 7.273381 CGTGTGAAGTGAAAGAAACAAAGAATT 59.727 33.333 0.00 0.00 0.00 2.17
321 322 3.570975 ACAAAGAATTCAGCATCTGCACA 59.429 39.130 8.44 0.00 45.16 4.57
322 323 3.844577 AAGAATTCAGCATCTGCACAC 57.155 42.857 8.44 0.00 45.16 3.82
325 326 2.195741 ATTCAGCATCTGCACACTGT 57.804 45.000 4.79 0.00 45.16 3.55
331 332 0.441533 CATCTGCACACTGTTCGCTC 59.558 55.000 0.00 0.00 0.00 5.03
366 370 1.218047 CGTTCCCGAGAGCCAATGA 59.782 57.895 0.00 0.00 35.63 2.57
367 371 0.391130 CGTTCCCGAGAGCCAATGAA 60.391 55.000 0.00 0.00 35.63 2.57
368 372 1.087501 GTTCCCGAGAGCCAATGAAC 58.912 55.000 0.00 0.00 0.00 3.18
369 373 0.035439 TTCCCGAGAGCCAATGAACC 60.035 55.000 0.00 0.00 0.00 3.62
372 376 0.036010 CCGAGAGCCAATGAACCTGT 60.036 55.000 0.00 0.00 0.00 4.00
410 414 4.394078 TCGAGTTGGCGACGTCGG 62.394 66.667 36.13 19.32 40.23 4.79
433 437 0.250338 ACTTGCCTCTTCCCAACGAC 60.250 55.000 0.00 0.00 0.00 4.34
434 438 0.955919 CTTGCCTCTTCCCAACGACC 60.956 60.000 0.00 0.00 0.00 4.79
502 521 3.129792 CAGCGTCTCTGGTTTCTCC 57.870 57.895 0.00 0.00 39.15 3.71
521 540 2.037902 TCCGTTTCTGATGCTGGTTACA 59.962 45.455 0.00 0.00 0.00 2.41
566 585 0.033920 TGGCGCATTAGCATCGATCT 59.966 50.000 10.83 0.00 42.27 2.75
592 611 6.446781 AGCGCTTGTTAGATTACTACTGTA 57.553 37.500 2.64 0.00 0.00 2.74
593 612 6.860080 AGCGCTTGTTAGATTACTACTGTAA 58.140 36.000 2.64 0.00 42.11 2.41
642 662 6.672118 GCAGAGATAGAGTTCGATCGTATGAG 60.672 46.154 15.94 0.00 33.92 2.90
712 732 1.179174 AGGTCAAAAAGGAAGGGCGC 61.179 55.000 0.00 0.00 0.00 6.53
713 733 1.460273 GGTCAAAAAGGAAGGGCGCA 61.460 55.000 10.83 0.00 0.00 6.09
714 734 0.387565 GTCAAAAAGGAAGGGCGCAA 59.612 50.000 10.83 0.00 0.00 4.85
715 735 1.000843 GTCAAAAAGGAAGGGCGCAAT 59.999 47.619 10.83 0.00 0.00 3.56
716 736 1.691434 TCAAAAAGGAAGGGCGCAATT 59.309 42.857 10.83 2.05 0.00 2.32
800 830 1.886585 CCGCCTAGGATCGATGAGG 59.113 63.158 14.75 7.95 45.00 3.86
868 898 3.728718 GCAATCCACGGCAAAAATATACG 59.271 43.478 0.00 0.00 0.00 3.06
869 899 4.496673 GCAATCCACGGCAAAAATATACGA 60.497 41.667 0.00 0.00 0.00 3.43
870 900 5.204833 CAATCCACGGCAAAAATATACGAG 58.795 41.667 0.00 0.00 0.00 4.18
941 981 2.711922 CCGGTCCACTTCTCCCTCG 61.712 68.421 0.00 0.00 0.00 4.63
946 986 1.477295 GTCCACTTCTCCCTCGTAAGG 59.523 57.143 0.00 0.00 42.95 2.69
947 987 0.175989 CCACTTCTCCCTCGTAAGGC 59.824 60.000 0.00 0.00 41.85 4.35
948 988 0.895530 CACTTCTCCCTCGTAAGGCA 59.104 55.000 0.00 0.00 41.85 4.75
975 1015 4.780815 CCATCTGCAACTAGGGTTCATAA 58.219 43.478 0.00 0.00 32.73 1.90
976 1016 4.576463 CCATCTGCAACTAGGGTTCATAAC 59.424 45.833 0.00 0.00 32.73 1.89
977 1017 5.431765 CATCTGCAACTAGGGTTCATAACT 58.568 41.667 0.00 0.00 32.73 2.24
978 1018 5.499004 TCTGCAACTAGGGTTCATAACTT 57.501 39.130 0.00 0.00 32.73 2.66
979 1019 5.488341 TCTGCAACTAGGGTTCATAACTTC 58.512 41.667 0.00 0.00 32.73 3.01
980 1020 5.012664 TCTGCAACTAGGGTTCATAACTTCA 59.987 40.000 0.00 0.00 32.73 3.02
981 1021 5.815581 TGCAACTAGGGTTCATAACTTCAT 58.184 37.500 0.00 0.00 32.73 2.57
982 1022 6.953101 TGCAACTAGGGTTCATAACTTCATA 58.047 36.000 0.00 0.00 32.73 2.15
983 1023 7.573710 TGCAACTAGGGTTCATAACTTCATAT 58.426 34.615 0.00 0.00 32.73 1.78
1008 1048 2.877300 GCCAGTGACCAACATGAGTGAT 60.877 50.000 0.00 0.00 0.00 3.06
1072 1147 1.271325 ACTTGTTCCACGCATGATGGA 60.271 47.619 13.64 13.64 44.74 3.41
1079 1154 2.182904 CACGCATGATGGATTGTGTG 57.817 50.000 0.00 2.66 44.83 3.82
1100 1175 4.925646 GTGTCTTGCATTCCATTTCCTTTC 59.074 41.667 0.00 0.00 0.00 2.62
1126 1203 0.040958 CTTGTTTGCTCACGCTCACC 60.041 55.000 0.00 0.00 36.97 4.02
1185 1262 1.065998 GCAGGGTATTACAACGGACCA 60.066 52.381 0.00 0.00 33.33 4.02
1254 1331 1.202545 GGCTTCCTCGAAGGATGGTAC 60.203 57.143 14.34 0.00 45.34 3.34
1255 1332 1.536284 GCTTCCTCGAAGGATGGTACG 60.536 57.143 14.34 0.00 45.34 3.67
1256 1333 1.749634 CTTCCTCGAAGGATGGTACGT 59.250 52.381 0.00 0.00 45.34 3.57
1257 1334 2.715749 TCCTCGAAGGATGGTACGTA 57.284 50.000 0.00 0.00 40.06 3.57
1261 1338 4.758674 TCCTCGAAGGATGGTACGTAATAG 59.241 45.833 0.00 0.00 40.06 1.73
1269 1346 7.592885 AGGATGGTACGTAATAGAAAGCTAA 57.407 36.000 0.00 0.00 0.00 3.09
1333 1414 2.168106 AGTGCTAATCTGAGGTGCTCTG 59.832 50.000 0.00 0.00 0.00 3.35
1334 1415 2.093764 GTGCTAATCTGAGGTGCTCTGT 60.094 50.000 0.00 0.00 32.50 3.41
1335 1416 2.093816 TGCTAATCTGAGGTGCTCTGTG 60.094 50.000 0.00 0.00 32.50 3.66
1336 1417 2.093764 GCTAATCTGAGGTGCTCTGTGT 60.094 50.000 0.00 0.00 32.50 3.72
1337 1418 3.618507 GCTAATCTGAGGTGCTCTGTGTT 60.619 47.826 0.00 0.00 32.50 3.32
1338 1419 2.758736 ATCTGAGGTGCTCTGTGTTC 57.241 50.000 0.00 0.00 32.50 3.18
1353 1434 2.282391 TTCGTGCTTGCATGCCCT 60.282 55.556 20.65 0.00 0.00 5.19
1354 1435 2.628696 TTCGTGCTTGCATGCCCTG 61.629 57.895 20.65 10.95 0.00 4.45
1371 1452 2.156310 CCCTGCAAAACTACGTACGAAC 59.844 50.000 24.41 2.26 0.00 3.95
1462 1543 1.614385 CTGATCGAAACACGTACGCT 58.386 50.000 16.72 0.00 43.13 5.07
1463 1544 2.777494 CTGATCGAAACACGTACGCTA 58.223 47.619 16.72 0.00 43.13 4.26
1637 1719 2.302587 ATGCTCCTAGAGGCCTAGAC 57.697 55.000 4.42 0.00 44.00 2.59
1640 1722 1.411787 GCTCCTAGAGGCCTAGACCAA 60.412 57.143 4.42 0.00 44.00 3.67
1719 1801 3.304721 CGACGGGTGGGTGGTGTA 61.305 66.667 0.00 0.00 0.00 2.90
1723 1805 0.544833 ACGGGTGGGTGGTGTATGTA 60.545 55.000 0.00 0.00 0.00 2.29
1724 1806 0.834612 CGGGTGGGTGGTGTATGTAT 59.165 55.000 0.00 0.00 0.00 2.29
1725 1807 1.474320 CGGGTGGGTGGTGTATGTATG 60.474 57.143 0.00 0.00 0.00 2.39
1726 1808 1.675552 GGTGGGTGGTGTATGTATGC 58.324 55.000 0.00 0.00 0.00 3.14
1727 1809 1.065053 GGTGGGTGGTGTATGTATGCA 60.065 52.381 0.00 0.00 0.00 3.96
1728 1810 2.422803 GGTGGGTGGTGTATGTATGCAT 60.423 50.000 3.79 3.79 39.03 3.96
1754 1870 9.067986 TGTATCTGATGTGAGTCTACGAATAAT 57.932 33.333 0.00 0.00 0.00 1.28
1760 1876 9.846248 TGATGTGAGTCTACGAATAATATGATG 57.154 33.333 0.00 0.00 0.00 3.07
1778 1894 9.745018 AATATGATGAGGAAAAAGAGAAGTTCA 57.255 29.630 5.50 0.00 0.00 3.18
1849 1965 8.798859 ATAGCATTATCAATATCAGGTTCACC 57.201 34.615 0.00 0.00 0.00 4.02
1893 2009 6.073167 GGTAAGGTAGAAAGTCAAAACTGAGC 60.073 42.308 0.00 0.00 35.36 4.26
1903 2019 1.577328 AAAACTGAGCGCCATGACGG 61.577 55.000 2.29 0.00 38.11 4.79
1921 2037 4.868116 ACGCAAACACACGCCCCT 62.868 61.111 0.00 0.00 0.00 4.79
1933 2049 0.698818 ACGCCCCTTCCAGAGAATTT 59.301 50.000 0.00 0.00 0.00 1.82
1940 2056 3.248602 CCCTTCCAGAGAATTTAATCGCG 59.751 47.826 0.00 0.00 0.00 5.87
1945 2061 2.097202 CAGAGAATTTAATCGCGCCGAG 60.097 50.000 0.00 0.00 39.91 4.63
1947 2063 0.384353 GAATTTAATCGCGCCGAGCC 60.384 55.000 0.00 0.00 44.76 4.70
1972 2088 1.264288 CAAACAGAGTGAAGCGGAACC 59.736 52.381 0.00 0.00 0.00 3.62
1974 2090 0.034059 ACAGAGTGAAGCGGAACCTG 59.966 55.000 0.00 0.00 0.00 4.00
2000 2117 1.648467 GCGAAGAGGCACATGGTTCC 61.648 60.000 0.00 0.00 0.00 3.62
2020 2137 3.142174 CCAACAAGAACCTGAAGAGACC 58.858 50.000 0.00 0.00 0.00 3.85
2021 2138 3.181450 CCAACAAGAACCTGAAGAGACCT 60.181 47.826 0.00 0.00 0.00 3.85
2022 2139 4.455606 CAACAAGAACCTGAAGAGACCTT 58.544 43.478 0.00 0.00 34.81 3.50
2023 2140 4.779993 ACAAGAACCTGAAGAGACCTTT 57.220 40.909 0.00 0.00 31.62 3.11
2024 2141 4.455606 ACAAGAACCTGAAGAGACCTTTG 58.544 43.478 0.00 0.00 31.62 2.77
2025 2142 4.080299 ACAAGAACCTGAAGAGACCTTTGT 60.080 41.667 0.00 0.00 31.62 2.83
2026 2143 4.344359 AGAACCTGAAGAGACCTTTGTC 57.656 45.455 0.00 0.00 42.09 3.18
2027 2144 2.821991 ACCTGAAGAGACCTTTGTCG 57.178 50.000 0.00 0.00 46.51 4.35
2028 2145 1.344763 ACCTGAAGAGACCTTTGTCGG 59.655 52.381 0.00 0.00 46.51 4.79
2029 2146 1.618837 CCTGAAGAGACCTTTGTCGGA 59.381 52.381 0.00 0.00 46.51 4.55
2030 2147 2.037251 CCTGAAGAGACCTTTGTCGGAA 59.963 50.000 0.00 0.00 46.51 4.30
2031 2148 3.494398 CCTGAAGAGACCTTTGTCGGAAA 60.494 47.826 0.00 0.00 46.51 3.13
2032 2149 4.127171 CTGAAGAGACCTTTGTCGGAAAA 58.873 43.478 0.00 0.00 46.51 2.29
2033 2150 4.519213 TGAAGAGACCTTTGTCGGAAAAA 58.481 39.130 0.00 0.00 46.51 1.94
2075 2192 3.181483 GGCTAACGTTAAGGCTAGCACTA 60.181 47.826 24.23 3.86 37.22 2.74
2101 2218 3.044059 GCGCAATCTGTGGCAGGAC 62.044 63.158 0.30 0.00 31.51 3.85
2102 2219 1.376424 CGCAATCTGTGGCAGGACT 60.376 57.895 0.00 0.00 31.51 3.85
2105 2222 1.078848 AATCTGTGGCAGGACTCGC 60.079 57.895 0.00 0.00 31.51 5.03
2108 2225 3.655810 CTGTGGCAGGACTCGCCTC 62.656 68.421 2.46 0.00 46.97 4.70
2110 2227 3.071206 TGGCAGGACTCGCCTCTC 61.071 66.667 2.46 0.00 46.97 3.20
2111 2228 3.844090 GGCAGGACTCGCCTCTCC 61.844 72.222 0.00 0.00 46.97 3.71
2112 2229 3.071206 GCAGGACTCGCCTCTCCA 61.071 66.667 0.00 0.00 46.97 3.86
2196 2327 2.909965 GGCTGGGCGTGGACAAAA 60.910 61.111 0.00 0.00 0.00 2.44
2203 2334 1.154225 GCGTGGACAAAAGGCATCG 60.154 57.895 0.00 0.00 0.00 3.84
2207 2338 0.537143 TGGACAAAAGGCATCGTGCT 60.537 50.000 9.31 0.00 44.28 4.40
2216 2347 1.416813 GGCATCGTGCTCGTCTTCTG 61.417 60.000 8.17 1.52 44.28 3.02
2218 2349 0.803768 CATCGTGCTCGTCTTCTGGG 60.804 60.000 8.17 0.00 38.33 4.45
2219 2350 2.564553 ATCGTGCTCGTCTTCTGGGC 62.565 60.000 8.17 0.00 38.33 5.36
2220 2351 2.811317 GTGCTCGTCTTCTGGGCG 60.811 66.667 0.00 0.00 0.00 6.13
2221 2352 4.742201 TGCTCGTCTTCTGGGCGC 62.742 66.667 0.00 0.00 0.00 6.53
2264 2411 1.364626 CCAGCAACCGCAAGAGCTAG 61.365 60.000 0.00 0.00 42.27 3.42
2265 2412 1.743252 AGCAACCGCAAGAGCTAGC 60.743 57.895 6.62 6.62 42.27 3.42
2266 2413 1.743252 GCAACCGCAAGAGCTAGCT 60.743 57.895 19.45 19.45 43.02 3.32
2267 2414 1.975363 GCAACCGCAAGAGCTAGCTG 61.975 60.000 24.99 10.30 43.02 4.24
2268 2415 1.743252 AACCGCAAGAGCTAGCTGC 60.743 57.895 24.99 19.38 43.29 5.25
2277 2424 4.758692 GCTAGCTGCGCCTATGAA 57.241 55.556 7.70 0.00 0.00 2.57
2278 2425 3.223661 GCTAGCTGCGCCTATGAAT 57.776 52.632 7.70 0.00 0.00 2.57
2279 2426 2.370281 GCTAGCTGCGCCTATGAATA 57.630 50.000 7.70 0.00 0.00 1.75
2280 2427 2.898705 GCTAGCTGCGCCTATGAATAT 58.101 47.619 7.70 0.00 0.00 1.28
2281 2428 2.606725 GCTAGCTGCGCCTATGAATATG 59.393 50.000 7.70 0.00 0.00 1.78
2282 2429 3.677148 GCTAGCTGCGCCTATGAATATGA 60.677 47.826 7.70 0.00 0.00 2.15
2283 2430 2.693069 AGCTGCGCCTATGAATATGAC 58.307 47.619 4.18 0.00 0.00 3.06
2284 2431 1.734465 GCTGCGCCTATGAATATGACC 59.266 52.381 4.18 0.00 0.00 4.02
2285 2432 1.995484 CTGCGCCTATGAATATGACCG 59.005 52.381 4.18 0.00 0.00 4.79
2286 2433 1.343142 TGCGCCTATGAATATGACCGT 59.657 47.619 4.18 0.00 0.00 4.83
2287 2434 2.224185 TGCGCCTATGAATATGACCGTT 60.224 45.455 4.18 0.00 0.00 4.44
2288 2435 2.806244 GCGCCTATGAATATGACCGTTT 59.194 45.455 0.00 0.00 0.00 3.60
2289 2436 3.250040 GCGCCTATGAATATGACCGTTTT 59.750 43.478 0.00 0.00 0.00 2.43
2290 2437 4.261031 GCGCCTATGAATATGACCGTTTTT 60.261 41.667 0.00 0.00 0.00 1.94
2291 2438 5.049954 GCGCCTATGAATATGACCGTTTTTA 60.050 40.000 0.00 0.00 0.00 1.52
2292 2439 6.348213 GCGCCTATGAATATGACCGTTTTTAT 60.348 38.462 0.00 0.00 0.00 1.40
2293 2440 7.581476 CGCCTATGAATATGACCGTTTTTATT 58.419 34.615 0.00 0.00 0.00 1.40
2294 2441 8.073768 CGCCTATGAATATGACCGTTTTTATTT 58.926 33.333 0.00 0.00 0.00 1.40
2295 2442 9.394477 GCCTATGAATATGACCGTTTTTATTTC 57.606 33.333 0.00 0.00 0.00 2.17
2296 2443 9.594038 CCTATGAATATGACCGTTTTTATTTCG 57.406 33.333 0.00 0.00 0.00 3.46
2300 2447 9.894783 TGAATATGACCGTTTTTATTTCGAAAA 57.105 25.926 15.66 1.71 0.00 2.29
2304 2451 8.980143 ATGACCGTTTTTATTTCGAAAATGAT 57.020 26.923 15.66 0.37 35.86 2.45
2305 2452 8.804688 TGACCGTTTTTATTTCGAAAATGATT 57.195 26.923 15.66 0.00 35.86 2.57
2306 2453 9.894783 TGACCGTTTTTATTTCGAAAATGATTA 57.105 25.926 15.66 0.00 35.86 1.75
2308 2455 8.842777 ACCGTTTTTATTTCGAAAATGATTACG 58.157 29.630 15.66 17.88 35.86 3.18
2309 2456 9.053135 CCGTTTTTATTTCGAAAATGATTACGA 57.947 29.630 23.71 3.93 35.86 3.43
2330 2477 7.988904 ACGATTCATAGTAAGTAGAAAGCAC 57.011 36.000 0.00 0.00 0.00 4.40
2331 2478 6.979238 ACGATTCATAGTAAGTAGAAAGCACC 59.021 38.462 0.00 0.00 0.00 5.01
2332 2479 7.147880 ACGATTCATAGTAAGTAGAAAGCACCT 60.148 37.037 0.00 0.00 0.00 4.00
2333 2480 7.380065 CGATTCATAGTAAGTAGAAAGCACCTC 59.620 40.741 0.00 0.00 0.00 3.85
2334 2481 7.476540 TTCATAGTAAGTAGAAAGCACCTCA 57.523 36.000 0.00 0.00 0.00 3.86
2335 2482 7.476540 TCATAGTAAGTAGAAAGCACCTCAA 57.523 36.000 0.00 0.00 0.00 3.02
2336 2483 7.903145 TCATAGTAAGTAGAAAGCACCTCAAA 58.097 34.615 0.00 0.00 0.00 2.69
2337 2484 7.817962 TCATAGTAAGTAGAAAGCACCTCAAAC 59.182 37.037 0.00 0.00 0.00 2.93
2338 2485 4.989168 AGTAAGTAGAAAGCACCTCAAACG 59.011 41.667 0.00 0.00 0.00 3.60
2339 2486 2.143925 AGTAGAAAGCACCTCAAACGC 58.856 47.619 0.00 0.00 0.00 4.84
2340 2487 1.871039 GTAGAAAGCACCTCAAACGCA 59.129 47.619 0.00 0.00 0.00 5.24
2341 2488 1.388547 AGAAAGCACCTCAAACGCAA 58.611 45.000 0.00 0.00 0.00 4.85
2342 2489 1.956477 AGAAAGCACCTCAAACGCAAT 59.044 42.857 0.00 0.00 0.00 3.56
2343 2490 2.362077 AGAAAGCACCTCAAACGCAATT 59.638 40.909 0.00 0.00 0.00 2.32
2344 2491 2.888834 AAGCACCTCAAACGCAATTT 57.111 40.000 0.00 0.00 0.00 1.82
2345 2492 2.422276 AGCACCTCAAACGCAATTTC 57.578 45.000 0.00 0.00 0.00 2.17
2346 2493 1.680735 AGCACCTCAAACGCAATTTCA 59.319 42.857 0.00 0.00 0.00 2.69
2347 2494 1.786579 GCACCTCAAACGCAATTTCAC 59.213 47.619 0.00 0.00 0.00 3.18
2348 2495 2.393764 CACCTCAAACGCAATTTCACC 58.606 47.619 0.00 0.00 0.00 4.02
2349 2496 1.001815 ACCTCAAACGCAATTTCACCG 60.002 47.619 0.00 0.00 0.00 4.94
2350 2497 1.265635 CCTCAAACGCAATTTCACCGA 59.734 47.619 0.00 0.00 0.00 4.69
2351 2498 2.307049 CTCAAACGCAATTTCACCGAC 58.693 47.619 0.00 0.00 0.00 4.79
2352 2499 1.671328 TCAAACGCAATTTCACCGACA 59.329 42.857 0.00 0.00 0.00 4.35
2353 2500 2.292016 TCAAACGCAATTTCACCGACAT 59.708 40.909 0.00 0.00 0.00 3.06
2354 2501 3.049206 CAAACGCAATTTCACCGACATT 58.951 40.909 0.00 0.00 0.00 2.71
2355 2502 3.363341 AACGCAATTTCACCGACATTT 57.637 38.095 0.00 0.00 0.00 2.32
2356 2503 3.363341 ACGCAATTTCACCGACATTTT 57.637 38.095 0.00 0.00 0.00 1.82
2357 2504 3.049206 ACGCAATTTCACCGACATTTTG 58.951 40.909 0.00 0.00 0.00 2.44
2358 2505 3.243234 ACGCAATTTCACCGACATTTTGA 60.243 39.130 0.00 0.00 0.00 2.69
2359 2506 3.361644 CGCAATTTCACCGACATTTTGAG 59.638 43.478 0.00 0.00 0.00 3.02
2360 2507 4.545610 GCAATTTCACCGACATTTTGAGA 58.454 39.130 0.00 0.00 0.00 3.27
2361 2508 4.382754 GCAATTTCACCGACATTTTGAGAC 59.617 41.667 0.00 0.00 0.00 3.36
2362 2509 4.766404 ATTTCACCGACATTTTGAGACC 57.234 40.909 0.00 0.00 0.00 3.85
2363 2510 2.920724 TCACCGACATTTTGAGACCA 57.079 45.000 0.00 0.00 0.00 4.02
2364 2511 2.489971 TCACCGACATTTTGAGACCAC 58.510 47.619 0.00 0.00 0.00 4.16
2365 2512 2.158885 TCACCGACATTTTGAGACCACA 60.159 45.455 0.00 0.00 0.00 4.17
2366 2513 2.616376 CACCGACATTTTGAGACCACAA 59.384 45.455 0.00 0.00 0.00 3.33
2367 2514 2.616842 ACCGACATTTTGAGACCACAAC 59.383 45.455 0.00 0.00 0.00 3.32
2368 2515 2.031157 CCGACATTTTGAGACCACAACC 60.031 50.000 0.00 0.00 0.00 3.77
2369 2516 2.616376 CGACATTTTGAGACCACAACCA 59.384 45.455 0.00 0.00 0.00 3.67
2370 2517 3.548014 CGACATTTTGAGACCACAACCAC 60.548 47.826 0.00 0.00 0.00 4.16
2371 2518 2.693074 ACATTTTGAGACCACAACCACC 59.307 45.455 0.00 0.00 0.00 4.61
2372 2519 2.516227 TTTTGAGACCACAACCACCA 57.484 45.000 0.00 0.00 0.00 4.17
2373 2520 1.757682 TTTGAGACCACAACCACCAC 58.242 50.000 0.00 0.00 0.00 4.16
2374 2521 0.106918 TTGAGACCACAACCACCACC 60.107 55.000 0.00 0.00 0.00 4.61
2375 2522 1.597027 GAGACCACAACCACCACCG 60.597 63.158 0.00 0.00 0.00 4.94
2376 2523 2.191109 GACCACAACCACCACCGT 59.809 61.111 0.00 0.00 0.00 4.83
2377 2524 1.049855 AGACCACAACCACCACCGTA 61.050 55.000 0.00 0.00 0.00 4.02
2378 2525 0.601841 GACCACAACCACCACCGTAG 60.602 60.000 0.00 0.00 0.00 3.51
2379 2526 1.964373 CCACAACCACCACCGTAGC 60.964 63.158 0.00 0.00 0.00 3.58
2380 2527 1.964373 CACAACCACCACCGTAGCC 60.964 63.158 0.00 0.00 0.00 3.93
2381 2528 2.740826 CAACCACCACCGTAGCCG 60.741 66.667 0.00 0.00 0.00 5.52
2392 2539 4.570663 GTAGCCGGAGCGCGATGT 62.571 66.667 12.10 0.00 46.67 3.06
2393 2540 3.833645 TAGCCGGAGCGCGATGTT 61.834 61.111 12.10 0.00 46.67 2.71
2396 2543 3.554692 CCGGAGCGCGATGTTGTC 61.555 66.667 12.10 0.00 0.00 3.18
2397 2544 2.507102 CGGAGCGCGATGTTGTCT 60.507 61.111 12.10 0.00 0.00 3.41
2398 2545 2.094659 CGGAGCGCGATGTTGTCTT 61.095 57.895 12.10 0.00 0.00 3.01
2399 2546 1.710339 GGAGCGCGATGTTGTCTTC 59.290 57.895 12.10 0.00 0.00 2.87
2400 2547 1.341802 GAGCGCGATGTTGTCTTCG 59.658 57.895 12.10 0.00 41.85 3.79
2405 2552 2.373938 CGATGTTGTCTTCGCTCCC 58.626 57.895 0.00 0.00 35.23 4.30
2406 2553 1.084370 CGATGTTGTCTTCGCTCCCC 61.084 60.000 0.00 0.00 35.23 4.81
2407 2554 0.250513 GATGTTGTCTTCGCTCCCCT 59.749 55.000 0.00 0.00 0.00 4.79
2408 2555 1.480954 GATGTTGTCTTCGCTCCCCTA 59.519 52.381 0.00 0.00 0.00 3.53
2409 2556 0.606604 TGTTGTCTTCGCTCCCCTAC 59.393 55.000 0.00 0.00 0.00 3.18
2410 2557 0.108281 GTTGTCTTCGCTCCCCTACC 60.108 60.000 0.00 0.00 0.00 3.18
2411 2558 1.601419 TTGTCTTCGCTCCCCTACCG 61.601 60.000 0.00 0.00 0.00 4.02
2412 2559 2.050934 GTCTTCGCTCCCCTACCGT 61.051 63.158 0.00 0.00 0.00 4.83
2413 2560 0.749454 GTCTTCGCTCCCCTACCGTA 60.749 60.000 0.00 0.00 0.00 4.02
2414 2561 0.465097 TCTTCGCTCCCCTACCGTAG 60.465 60.000 0.00 0.00 0.00 3.51
2415 2562 2.073037 CTTCGCTCCCCTACCGTAGC 62.073 65.000 0.00 0.00 0.00 3.58
2416 2563 3.603671 CGCTCCCCTACCGTAGCC 61.604 72.222 0.00 0.00 0.00 3.93
2417 2564 2.443390 GCTCCCCTACCGTAGCCA 60.443 66.667 0.00 0.00 0.00 4.75
2418 2565 2.062177 GCTCCCCTACCGTAGCCAA 61.062 63.158 0.00 0.00 0.00 4.52
2419 2566 1.821258 CTCCCCTACCGTAGCCAAC 59.179 63.158 0.00 0.00 0.00 3.77
2420 2567 0.686769 CTCCCCTACCGTAGCCAACT 60.687 60.000 0.00 0.00 0.00 3.16
2421 2568 0.252375 TCCCCTACCGTAGCCAACTT 60.252 55.000 0.00 0.00 0.00 2.66
2422 2569 0.107848 CCCCTACCGTAGCCAACTTG 60.108 60.000 0.00 0.00 0.00 3.16
2423 2570 0.899720 CCCTACCGTAGCCAACTTGA 59.100 55.000 0.00 0.00 0.00 3.02
2424 2571 1.485066 CCCTACCGTAGCCAACTTGAT 59.515 52.381 0.00 0.00 0.00 2.57
2425 2572 2.550978 CCTACCGTAGCCAACTTGATG 58.449 52.381 0.00 0.00 0.00 3.07
2426 2573 2.550978 CTACCGTAGCCAACTTGATGG 58.449 52.381 0.00 0.00 43.70 3.51
2427 2574 0.690762 ACCGTAGCCAACTTGATGGT 59.309 50.000 0.00 0.00 42.75 3.55
2428 2575 1.086696 CCGTAGCCAACTTGATGGTG 58.913 55.000 0.00 0.00 42.75 4.17
2429 2576 1.610624 CCGTAGCCAACTTGATGGTGT 60.611 52.381 0.00 0.00 42.75 4.16
2430 2577 1.732259 CGTAGCCAACTTGATGGTGTC 59.268 52.381 0.00 0.00 42.75 3.67
2431 2578 2.778299 GTAGCCAACTTGATGGTGTCA 58.222 47.619 0.00 0.00 42.75 3.58
2432 2579 2.363306 AGCCAACTTGATGGTGTCAA 57.637 45.000 0.00 0.00 44.36 3.18
2433 2580 2.880443 AGCCAACTTGATGGTGTCAAT 58.120 42.857 0.00 0.00 45.36 2.57
2434 2581 2.559668 AGCCAACTTGATGGTGTCAATG 59.440 45.455 0.00 0.00 45.36 2.82
2435 2582 2.557924 GCCAACTTGATGGTGTCAATGA 59.442 45.455 0.00 0.00 45.36 2.57
2436 2583 3.612479 GCCAACTTGATGGTGTCAATGAC 60.612 47.826 6.41 6.41 45.36 3.06
2437 2584 3.569277 CCAACTTGATGGTGTCAATGACA 59.431 43.478 12.63 12.63 45.36 3.58
2438 2585 4.320714 CCAACTTGATGGTGTCAATGACAG 60.321 45.833 17.28 5.68 45.36 3.51
2439 2586 4.090761 ACTTGATGGTGTCAATGACAGT 57.909 40.909 17.28 6.35 45.36 3.55
2440 2587 4.464008 ACTTGATGGTGTCAATGACAGTT 58.536 39.130 17.28 4.35 45.36 3.16
2441 2588 4.889409 ACTTGATGGTGTCAATGACAGTTT 59.111 37.500 17.28 3.98 45.36 2.66
2442 2589 4.834357 TGATGGTGTCAATGACAGTTTG 57.166 40.909 17.28 0.00 43.57 2.93
2443 2590 3.569277 TGATGGTGTCAATGACAGTTTGG 59.431 43.478 17.28 0.00 43.57 3.28
2444 2591 3.289407 TGGTGTCAATGACAGTTTGGA 57.711 42.857 17.28 0.00 43.57 3.53
2445 2592 3.625853 TGGTGTCAATGACAGTTTGGAA 58.374 40.909 17.28 0.00 43.57 3.53
2446 2593 3.631686 TGGTGTCAATGACAGTTTGGAAG 59.368 43.478 17.28 0.00 43.57 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.953648 CCGGTTTGTAAGGGTCTTTTGT 59.046 45.455 0.00 0.00 0.00 2.83
1 2 2.295070 CCCGGTTTGTAAGGGTCTTTTG 59.705 50.000 0.00 0.00 40.27 2.44
2 3 2.589720 CCCGGTTTGTAAGGGTCTTTT 58.410 47.619 0.00 0.00 40.27 2.27
3 4 1.202964 CCCCGGTTTGTAAGGGTCTTT 60.203 52.381 0.00 0.00 43.58 2.52
4 5 0.402887 CCCCGGTTTGTAAGGGTCTT 59.597 55.000 0.00 0.00 43.58 3.01
5 6 2.072366 CCCCGGTTTGTAAGGGTCT 58.928 57.895 0.00 0.00 43.58 3.85
6 7 4.728409 CCCCGGTTTGTAAGGGTC 57.272 61.111 0.00 0.00 43.58 4.46
8 9 2.583024 TTTACCCCGGTTTGTAAGGG 57.417 50.000 0.00 0.00 45.75 3.95
9 10 2.229543 GCTTTTACCCCGGTTTGTAAGG 59.770 50.000 0.00 0.00 0.00 2.69
10 11 2.229543 GGCTTTTACCCCGGTTTGTAAG 59.770 50.000 0.00 0.00 0.00 2.34
11 12 2.237643 GGCTTTTACCCCGGTTTGTAA 58.762 47.619 0.00 2.39 0.00 2.41
12 13 1.547449 GGGCTTTTACCCCGGTTTGTA 60.547 52.381 0.00 0.00 45.00 2.41
13 14 0.828762 GGGCTTTTACCCCGGTTTGT 60.829 55.000 0.00 0.00 45.00 2.83
14 15 1.969085 GGGCTTTTACCCCGGTTTG 59.031 57.895 0.00 0.00 45.00 2.93
15 16 4.525467 GGGCTTTTACCCCGGTTT 57.475 55.556 0.00 0.00 45.00 3.27
21 22 2.320681 AGGAAAAGGGGCTTTTACCC 57.679 50.000 0.00 0.00 43.22 3.69
22 23 4.043608 AGTAGGAAAAGGGGCTTTTACC 57.956 45.455 0.00 0.00 43.22 2.85
23 24 5.646793 CACTAGTAGGAAAAGGGGCTTTTAC 59.353 44.000 1.45 0.00 42.72 2.01
24 25 5.311385 ACACTAGTAGGAAAAGGGGCTTTTA 59.689 40.000 1.45 0.00 42.72 1.52
25 26 4.105858 ACACTAGTAGGAAAAGGGGCTTTT 59.894 41.667 1.45 0.00 44.92 2.27
26 27 3.656264 ACACTAGTAGGAAAAGGGGCTTT 59.344 43.478 1.45 0.00 34.94 3.51
27 28 3.257578 ACACTAGTAGGAAAAGGGGCTT 58.742 45.455 1.45 0.00 0.00 4.35
28 29 2.917205 ACACTAGTAGGAAAAGGGGCT 58.083 47.619 1.45 0.00 0.00 5.19
29 30 3.263681 AGAACACTAGTAGGAAAAGGGGC 59.736 47.826 1.45 0.00 0.00 5.80
30 31 4.530946 TGAGAACACTAGTAGGAAAAGGGG 59.469 45.833 1.45 0.00 0.00 4.79
31 32 5.011738 TGTGAGAACACTAGTAGGAAAAGGG 59.988 44.000 1.45 0.00 46.07 3.95
32 33 6.097915 TGTGAGAACACTAGTAGGAAAAGG 57.902 41.667 1.45 0.00 46.07 3.11
33 34 7.711339 ACTTTGTGAGAACACTAGTAGGAAAAG 59.289 37.037 1.45 1.52 46.07 2.27
34 35 7.562135 ACTTTGTGAGAACACTAGTAGGAAAA 58.438 34.615 1.45 0.00 46.07 2.29
35 36 7.120923 ACTTTGTGAGAACACTAGTAGGAAA 57.879 36.000 1.45 0.00 46.07 3.13
36 37 6.726490 ACTTTGTGAGAACACTAGTAGGAA 57.274 37.500 1.45 0.00 46.07 3.36
37 38 6.726490 AACTTTGTGAGAACACTAGTAGGA 57.274 37.500 1.45 0.00 46.07 2.94
38 39 6.144080 CGAAACTTTGTGAGAACACTAGTAGG 59.856 42.308 1.45 0.00 46.07 3.18
39 40 6.144080 CCGAAACTTTGTGAGAACACTAGTAG 59.856 42.308 0.00 0.00 46.07 2.57
40 41 5.981315 CCGAAACTTTGTGAGAACACTAGTA 59.019 40.000 0.00 0.00 46.07 1.82
41 42 4.809426 CCGAAACTTTGTGAGAACACTAGT 59.191 41.667 0.00 0.00 46.07 2.57
42 43 5.047847 TCCGAAACTTTGTGAGAACACTAG 58.952 41.667 0.00 0.00 46.07 2.57
43 44 5.013568 TCCGAAACTTTGTGAGAACACTA 57.986 39.130 0.00 0.00 46.07 2.74
44 45 3.869065 TCCGAAACTTTGTGAGAACACT 58.131 40.909 0.00 0.00 46.07 3.55
45 46 4.609691 TTCCGAAACTTTGTGAGAACAC 57.390 40.909 0.00 0.00 46.09 3.32
46 47 5.828299 AATTCCGAAACTTTGTGAGAACA 57.172 34.783 0.00 0.00 0.00 3.18
47 48 8.623310 TTAAAATTCCGAAACTTTGTGAGAAC 57.377 30.769 0.00 0.00 0.00 3.01
48 49 9.640963 TTTTAAAATTCCGAAACTTTGTGAGAA 57.359 25.926 0.00 0.00 0.00 2.87
49 50 9.640963 TTTTTAAAATTCCGAAACTTTGTGAGA 57.359 25.926 0.55 0.00 0.00 3.27
73 74 8.702438 CGTGAGAAAAACATATCAAAGCATTTT 58.298 29.630 0.00 0.00 35.03 1.82
74 75 7.867403 ACGTGAGAAAAACATATCAAAGCATTT 59.133 29.630 0.00 0.00 40.26 2.32
75 76 7.326789 CACGTGAGAAAAACATATCAAAGCATT 59.673 33.333 10.90 0.00 0.00 3.56
76 77 6.803320 CACGTGAGAAAAACATATCAAAGCAT 59.197 34.615 10.90 0.00 0.00 3.79
77 78 6.142139 CACGTGAGAAAAACATATCAAAGCA 58.858 36.000 10.90 0.00 0.00 3.91
78 79 5.569059 CCACGTGAGAAAAACATATCAAAGC 59.431 40.000 19.30 0.00 0.00 3.51
79 80 6.086222 CCCACGTGAGAAAAACATATCAAAG 58.914 40.000 19.30 0.00 0.00 2.77
80 81 5.533154 ACCCACGTGAGAAAAACATATCAAA 59.467 36.000 19.30 0.00 0.00 2.69
81 82 5.049060 CACCCACGTGAGAAAAACATATCAA 60.049 40.000 19.30 0.00 43.14 2.57
82 83 4.454161 CACCCACGTGAGAAAAACATATCA 59.546 41.667 19.30 0.00 43.14 2.15
83 84 4.671766 GCACCCACGTGAGAAAAACATATC 60.672 45.833 19.30 0.00 43.14 1.63
84 85 3.190535 GCACCCACGTGAGAAAAACATAT 59.809 43.478 19.30 0.00 43.14 1.78
85 86 2.550606 GCACCCACGTGAGAAAAACATA 59.449 45.455 19.30 0.00 43.14 2.29
86 87 1.336755 GCACCCACGTGAGAAAAACAT 59.663 47.619 19.30 0.00 43.14 2.71
87 88 0.736053 GCACCCACGTGAGAAAAACA 59.264 50.000 19.30 0.00 43.14 2.83
88 89 0.736053 TGCACCCACGTGAGAAAAAC 59.264 50.000 19.30 0.00 43.14 2.43
89 90 1.606668 GATGCACCCACGTGAGAAAAA 59.393 47.619 19.30 0.00 43.14 1.94
90 91 1.234821 GATGCACCCACGTGAGAAAA 58.765 50.000 19.30 0.00 43.14 2.29
91 92 0.107643 TGATGCACCCACGTGAGAAA 59.892 50.000 19.30 0.00 43.14 2.52
92 93 0.107643 TTGATGCACCCACGTGAGAA 59.892 50.000 19.30 0.87 43.14 2.87
93 94 0.320683 CTTGATGCACCCACGTGAGA 60.321 55.000 19.30 0.00 43.14 3.27
94 95 1.915614 GCTTGATGCACCCACGTGAG 61.916 60.000 19.30 6.24 43.14 3.51
95 96 1.965930 GCTTGATGCACCCACGTGA 60.966 57.895 19.30 0.00 43.14 4.35
96 97 1.968017 AGCTTGATGCACCCACGTG 60.968 57.895 9.08 9.08 45.94 4.49
97 98 1.968017 CAGCTTGATGCACCCACGT 60.968 57.895 0.00 0.00 45.94 4.49
98 99 2.693762 CCAGCTTGATGCACCCACG 61.694 63.158 0.00 0.00 45.94 4.94
99 100 1.604593 ACCAGCTTGATGCACCCAC 60.605 57.895 0.00 0.00 45.94 4.61
100 101 1.604308 CACCAGCTTGATGCACCCA 60.604 57.895 0.00 0.00 45.94 4.51
101 102 1.604593 ACACCAGCTTGATGCACCC 60.605 57.895 0.00 0.00 45.94 4.61
102 103 1.174712 ACACACCAGCTTGATGCACC 61.175 55.000 0.00 0.00 45.94 5.01
103 104 1.466167 CTACACACCAGCTTGATGCAC 59.534 52.381 0.00 0.00 45.94 4.57
104 105 1.347378 TCTACACACCAGCTTGATGCA 59.653 47.619 0.00 0.00 45.94 3.96
105 106 2.099141 TCTACACACCAGCTTGATGC 57.901 50.000 0.00 0.00 43.29 3.91
106 107 5.437289 TTTTTCTACACACCAGCTTGATG 57.563 39.130 0.00 0.00 0.00 3.07
107 108 5.769662 TGATTTTTCTACACACCAGCTTGAT 59.230 36.000 0.00 0.00 0.00 2.57
108 109 5.008613 GTGATTTTTCTACACACCAGCTTGA 59.991 40.000 0.00 0.00 35.06 3.02
109 110 5.215160 GTGATTTTTCTACACACCAGCTTG 58.785 41.667 0.00 0.00 35.06 4.01
110 111 4.887071 TGTGATTTTTCTACACACCAGCTT 59.113 37.500 0.00 0.00 39.17 3.74
111 112 4.460263 TGTGATTTTTCTACACACCAGCT 58.540 39.130 0.00 0.00 39.17 4.24
112 113 4.829064 TGTGATTTTTCTACACACCAGC 57.171 40.909 0.00 0.00 39.17 4.85
117 118 9.208022 CAGATAAGAGTGTGATTTTTCTACACA 57.792 33.333 9.10 0.00 45.30 3.72
118 119 9.424319 TCAGATAAGAGTGTGATTTTTCTACAC 57.576 33.333 0.00 0.00 43.71 2.90
119 120 9.996554 TTCAGATAAGAGTGTGATTTTTCTACA 57.003 29.630 0.00 0.00 0.00 2.74
121 122 9.436957 GGTTCAGATAAGAGTGTGATTTTTCTA 57.563 33.333 0.00 0.00 0.00 2.10
122 123 7.391833 GGGTTCAGATAAGAGTGTGATTTTTCT 59.608 37.037 0.00 0.00 0.00 2.52
123 124 7.391833 AGGGTTCAGATAAGAGTGTGATTTTTC 59.608 37.037 0.00 0.00 0.00 2.29
124 125 7.234355 AGGGTTCAGATAAGAGTGTGATTTTT 58.766 34.615 0.00 0.00 0.00 1.94
125 126 6.784031 AGGGTTCAGATAAGAGTGTGATTTT 58.216 36.000 0.00 0.00 0.00 1.82
126 127 6.380079 AGGGTTCAGATAAGAGTGTGATTT 57.620 37.500 0.00 0.00 0.00 2.17
127 128 6.380079 AAGGGTTCAGATAAGAGTGTGATT 57.620 37.500 0.00 0.00 0.00 2.57
128 129 7.126421 ACATAAGGGTTCAGATAAGAGTGTGAT 59.874 37.037 0.00 0.00 0.00 3.06
129 130 6.440647 ACATAAGGGTTCAGATAAGAGTGTGA 59.559 38.462 0.00 0.00 0.00 3.58
130 131 6.644347 ACATAAGGGTTCAGATAAGAGTGTG 58.356 40.000 0.00 0.00 0.00 3.82
131 132 6.875972 ACATAAGGGTTCAGATAAGAGTGT 57.124 37.500 0.00 0.00 0.00 3.55
132 133 6.540189 CCAACATAAGGGTTCAGATAAGAGTG 59.460 42.308 0.00 0.00 0.00 3.51
133 134 6.653989 CCAACATAAGGGTTCAGATAAGAGT 58.346 40.000 0.00 0.00 0.00 3.24
134 135 5.529060 GCCAACATAAGGGTTCAGATAAGAG 59.471 44.000 0.00 0.00 0.00 2.85
135 136 5.191722 AGCCAACATAAGGGTTCAGATAAGA 59.808 40.000 0.00 0.00 31.69 2.10
136 137 5.440610 AGCCAACATAAGGGTTCAGATAAG 58.559 41.667 0.00 0.00 31.69 1.73
158 159 0.378962 CGGAGACCGTGAGAGCTAAG 59.621 60.000 1.80 0.00 42.73 2.18
188 189 3.406361 GAGTGACGCGTGGTGCAG 61.406 66.667 20.70 0.00 46.97 4.41
224 225 2.693074 TCGGTGTCTATGCTATGCTGAA 59.307 45.455 0.00 0.00 0.00 3.02
225 226 2.306847 TCGGTGTCTATGCTATGCTGA 58.693 47.619 0.00 0.00 0.00 4.26
227 228 3.819564 TTTCGGTGTCTATGCTATGCT 57.180 42.857 0.00 0.00 0.00 3.79
228 229 3.871594 AGTTTTCGGTGTCTATGCTATGC 59.128 43.478 0.00 0.00 0.00 3.14
229 230 5.352284 AGAGTTTTCGGTGTCTATGCTATG 58.648 41.667 0.00 0.00 0.00 2.23
230 231 5.599999 AGAGTTTTCGGTGTCTATGCTAT 57.400 39.130 0.00 0.00 0.00 2.97
231 232 5.884232 TCTAGAGTTTTCGGTGTCTATGCTA 59.116 40.000 0.00 0.00 0.00 3.49
243 244 2.233922 TGGCCCTTCTCTAGAGTTTTCG 59.766 50.000 19.21 6.04 0.00 3.46
263 264 2.930040 ACGATTCGTAGCAAACCAGATG 59.070 45.455 10.53 0.00 38.73 2.90
270 271 3.183574 CACTTCACACGATTCGTAGCAAA 59.816 43.478 11.99 3.75 38.32 3.68
289 290 6.866480 TGCTGAATTCTTTGTTTCTTTCACT 58.134 32.000 7.05 0.00 0.00 3.41
290 291 7.650903 AGATGCTGAATTCTTTGTTTCTTTCAC 59.349 33.333 7.05 0.00 0.00 3.18
291 292 7.650504 CAGATGCTGAATTCTTTGTTTCTTTCA 59.349 33.333 7.05 0.00 32.44 2.69
292 293 7.359014 GCAGATGCTGAATTCTTTGTTTCTTTC 60.359 37.037 7.05 0.00 38.21 2.62
308 309 1.516161 GAACAGTGTGCAGATGCTGA 58.484 50.000 8.27 0.00 42.66 4.26
321 322 2.961526 ACCGATAATGAGCGAACAGT 57.038 45.000 0.00 0.00 36.26 3.55
322 323 2.216488 CGAACCGATAATGAGCGAACAG 59.784 50.000 0.00 0.00 36.26 3.16
325 326 2.190161 CACGAACCGATAATGAGCGAA 58.810 47.619 0.00 0.00 36.26 4.70
331 332 0.996462 ACGTGCACGAACCGATAATG 59.004 50.000 42.94 12.22 43.02 1.90
366 370 2.683867 CGAGACGAGGAGAATACAGGTT 59.316 50.000 0.00 0.00 0.00 3.50
367 371 2.290464 CGAGACGAGGAGAATACAGGT 58.710 52.381 0.00 0.00 0.00 4.00
368 372 1.002251 GCGAGACGAGGAGAATACAGG 60.002 57.143 0.00 0.00 0.00 4.00
369 373 1.002251 GGCGAGACGAGGAGAATACAG 60.002 57.143 0.00 0.00 0.00 2.74
372 376 1.880675 GATGGCGAGACGAGGAGAATA 59.119 52.381 0.00 0.00 0.00 1.75
410 414 2.160205 GTTGGGAAGAGGCAAGTAACC 58.840 52.381 0.00 0.00 0.00 2.85
411 415 1.804748 CGTTGGGAAGAGGCAAGTAAC 59.195 52.381 0.00 0.00 0.00 2.50
433 437 5.004922 AGCTACGATCTTCTTCTTCTTGG 57.995 43.478 0.00 0.00 0.00 3.61
434 438 4.732923 CGAGCTACGATCTTCTTCTTCTTG 59.267 45.833 0.00 0.00 45.77 3.02
502 521 3.325870 TCTGTAACCAGCATCAGAAACG 58.674 45.455 0.00 0.00 38.66 3.60
566 585 6.318144 ACAGTAGTAATCTAACAAGCGCTAGA 59.682 38.462 12.05 10.76 0.00 2.43
592 611 4.023279 TGCTGTCGCTGTTTACAATTGATT 60.023 37.500 13.59 0.00 36.97 2.57
593 612 3.501828 TGCTGTCGCTGTTTACAATTGAT 59.498 39.130 13.59 0.00 36.97 2.57
594 613 2.875317 TGCTGTCGCTGTTTACAATTGA 59.125 40.909 13.59 0.00 36.97 2.57
595 614 3.266541 TGCTGTCGCTGTTTACAATTG 57.733 42.857 3.24 3.24 36.97 2.32
642 662 2.895404 AGCAAATGGGGCATCATCATAC 59.105 45.455 0.00 0.00 0.00 2.39
816 846 5.133221 AGTGGTGCTTCTAAAACATTCTGT 58.867 37.500 0.00 0.00 0.00 3.41
818 848 7.817418 TTTAGTGGTGCTTCTAAAACATTCT 57.183 32.000 0.00 0.00 34.55 2.40
868 898 2.413371 GCTGCAAACCGAAGATCAACTC 60.413 50.000 0.00 0.00 0.00 3.01
869 899 1.537202 GCTGCAAACCGAAGATCAACT 59.463 47.619 0.00 0.00 0.00 3.16
870 900 1.401539 GGCTGCAAACCGAAGATCAAC 60.402 52.381 0.50 0.00 0.00 3.18
975 1015 6.099701 TGTTGGTCACTGGCTATATATGAAGT 59.900 38.462 0.00 0.00 0.00 3.01
976 1016 6.524734 TGTTGGTCACTGGCTATATATGAAG 58.475 40.000 0.00 0.00 0.00 3.02
977 1017 6.493189 TGTTGGTCACTGGCTATATATGAA 57.507 37.500 0.00 0.00 0.00 2.57
978 1018 6.269769 TCATGTTGGTCACTGGCTATATATGA 59.730 38.462 0.00 0.00 0.00 2.15
979 1019 6.466812 TCATGTTGGTCACTGGCTATATATG 58.533 40.000 0.00 0.00 0.00 1.78
980 1020 6.270927 ACTCATGTTGGTCACTGGCTATATAT 59.729 38.462 0.00 0.00 0.00 0.86
981 1021 5.602561 ACTCATGTTGGTCACTGGCTATATA 59.397 40.000 0.00 0.00 0.00 0.86
982 1022 4.410228 ACTCATGTTGGTCACTGGCTATAT 59.590 41.667 0.00 0.00 0.00 0.86
983 1023 3.774766 ACTCATGTTGGTCACTGGCTATA 59.225 43.478 0.00 0.00 0.00 1.31
988 1028 2.549064 TCACTCATGTTGGTCACTGG 57.451 50.000 0.00 0.00 0.00 4.00
1008 1048 0.036388 ACGAGTACCCGTACCTTCGA 60.036 55.000 18.10 0.00 41.44 3.71
1049 1089 2.831685 TCATGCGTGGAACAAGTAGT 57.168 45.000 5.98 0.00 44.16 2.73
1051 1091 2.027653 TCCATCATGCGTGGAACAAGTA 60.028 45.455 14.90 0.00 44.16 2.24
1054 1094 3.641017 TCCATCATGCGTGGAACAA 57.359 47.368 14.90 0.00 44.16 2.83
1072 1147 4.877378 AATGGAATGCAAGACACACAAT 57.123 36.364 0.00 0.00 0.00 2.71
1079 1154 5.397142 AGAAAGGAAATGGAATGCAAGAC 57.603 39.130 0.00 0.00 0.00 3.01
1100 1175 1.532868 CGTGAGCAAACAAGAAGGGAG 59.467 52.381 0.00 0.00 0.00 4.30
1126 1203 2.053627 GTTTCAGTTTCATGCAAGGCG 58.946 47.619 0.00 0.00 0.00 5.52
1254 1331 6.196724 CGTCAGGTTCTTAGCTTTCTATTACG 59.803 42.308 0.00 0.00 0.00 3.18
1255 1332 6.476053 CCGTCAGGTTCTTAGCTTTCTATTAC 59.524 42.308 0.00 0.00 0.00 1.89
1256 1333 6.570692 CCGTCAGGTTCTTAGCTTTCTATTA 58.429 40.000 0.00 0.00 0.00 0.98
1257 1334 5.420409 CCGTCAGGTTCTTAGCTTTCTATT 58.580 41.667 0.00 0.00 0.00 1.73
1333 1414 1.730547 GGCATGCAAGCACGAACAC 60.731 57.895 21.36 0.00 35.83 3.32
1334 1415 2.644418 GGCATGCAAGCACGAACA 59.356 55.556 21.36 0.00 35.83 3.18
1335 1416 2.126346 GGGCATGCAAGCACGAAC 60.126 61.111 21.36 0.00 35.83 3.95
1336 1417 2.282391 AGGGCATGCAAGCACGAA 60.282 55.556 21.36 0.00 44.43 3.85
1337 1418 3.057548 CAGGGCATGCAAGCACGA 61.058 61.111 21.36 0.00 44.43 4.35
1353 1434 2.219216 GCTGTTCGTACGTAGTTTTGCA 59.781 45.455 16.05 0.00 37.78 4.08
1354 1435 2.410646 GGCTGTTCGTACGTAGTTTTGC 60.411 50.000 16.05 11.07 37.78 3.68
1355 1436 3.054878 AGGCTGTTCGTACGTAGTTTTG 58.945 45.455 16.05 2.06 37.78 2.44
1356 1437 3.054878 CAGGCTGTTCGTACGTAGTTTT 58.945 45.455 16.05 0.00 37.78 2.43
1462 1543 2.124612 TCGGCCGTCGTCTGGATA 60.125 61.111 27.15 0.00 40.32 2.59
1463 1544 3.823330 GTCGGCCGTCGTCTGGAT 61.823 66.667 27.15 0.00 40.32 3.41
1484 1565 4.766088 GGTTCGTCGGTCGGTCGG 62.766 72.222 0.00 0.00 40.32 4.79
1611 1692 5.473849 AGGCCTCTAGGAGCATATGTATA 57.526 43.478 0.00 0.00 37.39 1.47
1622 1704 2.315155 ACTTTGGTCTAGGCCTCTAGGA 59.685 50.000 15.92 0.26 42.42 2.94
1637 1719 6.566197 ATTCTTTCTGCAGTTCTACTTTGG 57.434 37.500 14.67 0.00 0.00 3.28
1640 1722 5.877564 GGCTATTCTTTCTGCAGTTCTACTT 59.122 40.000 14.67 0.00 0.00 2.24
1719 1801 6.766429 ACTCACATCAGATACATGCATACAT 58.234 36.000 0.00 0.00 36.79 2.29
1723 1805 5.548181 AGACTCACATCAGATACATGCAT 57.452 39.130 0.00 0.00 0.00 3.96
1724 1806 5.506317 CGTAGACTCACATCAGATACATGCA 60.506 44.000 0.00 0.00 0.00 3.96
1725 1807 4.914504 CGTAGACTCACATCAGATACATGC 59.085 45.833 0.00 0.00 0.00 4.06
1726 1808 6.305693 TCGTAGACTCACATCAGATACATG 57.694 41.667 0.00 0.00 0.00 3.21
1727 1809 6.944234 TTCGTAGACTCACATCAGATACAT 57.056 37.500 0.00 0.00 34.32 2.29
1728 1810 6.944234 ATTCGTAGACTCACATCAGATACA 57.056 37.500 0.00 0.00 34.32 2.29
1754 1870 7.335422 GCTGAACTTCTCTTTTTCCTCATCATA 59.665 37.037 0.00 0.00 0.00 2.15
1759 1875 4.576463 GTGCTGAACTTCTCTTTTTCCTCA 59.424 41.667 0.00 0.00 0.00 3.86
1760 1876 4.023622 GGTGCTGAACTTCTCTTTTTCCTC 60.024 45.833 0.00 0.00 0.00 3.71
1761 1877 3.885901 GGTGCTGAACTTCTCTTTTTCCT 59.114 43.478 0.00 0.00 0.00 3.36
1771 1887 5.064452 CACATCATAGAAGGTGCTGAACTTC 59.936 44.000 0.00 0.00 42.56 3.01
1778 1894 2.158842 GGCTCACATCATAGAAGGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
1827 1943 5.617751 GCGGTGAACCTGATATTGATAATGC 60.618 44.000 0.00 0.00 0.00 3.56
1843 1959 0.247736 ATCTCCTGTGAGCGGTGAAC 59.752 55.000 0.00 0.00 38.58 3.18
1844 1960 0.247460 CATCTCCTGTGAGCGGTGAA 59.753 55.000 0.00 0.00 38.58 3.18
1845 1961 1.893062 CATCTCCTGTGAGCGGTGA 59.107 57.895 0.00 0.00 38.58 4.02
1846 1962 1.812922 GCATCTCCTGTGAGCGGTG 60.813 63.158 0.00 0.00 38.58 4.94
1847 1963 2.285773 TGCATCTCCTGTGAGCGGT 61.286 57.895 0.00 0.00 38.58 5.68
1848 1964 1.812922 GTGCATCTCCTGTGAGCGG 60.813 63.158 0.00 0.00 38.58 5.52
1849 1965 1.812922 GGTGCATCTCCTGTGAGCG 60.813 63.158 0.00 0.00 38.58 5.03
1893 2009 3.418913 TTTGCGTCCGTCATGGCG 61.419 61.111 13.99 13.99 39.35 5.69
1903 2019 4.322385 GGGGCGTGTGTTTGCGTC 62.322 66.667 0.00 0.00 0.00 5.19
1921 2037 2.612212 GGCGCGATTAAATTCTCTGGAA 59.388 45.455 12.10 0.00 35.78 3.53
1933 2049 4.624117 CTCGGCTCGGCGCGATTA 62.624 66.667 12.10 0.00 40.44 1.75
1940 2056 2.357034 TGTTTGACTCGGCTCGGC 60.357 61.111 0.00 0.00 0.00 5.54
1945 2061 1.795286 CTTCACTCTGTTTGACTCGGC 59.205 52.381 0.00 0.00 0.00 5.54
1947 2063 1.453524 CGCTTCACTCTGTTTGACTCG 59.546 52.381 0.00 0.00 0.00 4.18
1972 2088 2.105466 GCCTCTTCGCTTCCTGCAG 61.105 63.158 6.78 6.78 43.06 4.41
1974 2090 2.046892 TGCCTCTTCGCTTCCTGC 60.047 61.111 0.00 0.00 38.57 4.85
2000 2117 4.078639 AGGTCTCTTCAGGTTCTTGTTG 57.921 45.455 0.00 0.00 0.00 3.33
2042 2159 3.305398 AACGTTAGCCTGTCTCTTCAG 57.695 47.619 0.00 0.00 35.45 3.02
2043 2160 4.321750 CCTTAACGTTAGCCTGTCTCTTCA 60.322 45.833 8.23 0.00 0.00 3.02
2044 2161 4.174762 CCTTAACGTTAGCCTGTCTCTTC 58.825 47.826 8.23 0.00 0.00 2.87
2045 2162 3.616802 GCCTTAACGTTAGCCTGTCTCTT 60.617 47.826 8.23 0.00 0.00 2.85
2046 2163 2.094130 GCCTTAACGTTAGCCTGTCTCT 60.094 50.000 8.23 0.00 0.00 3.10
2047 2164 2.094130 AGCCTTAACGTTAGCCTGTCTC 60.094 50.000 14.02 0.00 0.00 3.36
2048 2165 1.900486 AGCCTTAACGTTAGCCTGTCT 59.100 47.619 14.02 3.34 0.00 3.41
2049 2166 2.381725 AGCCTTAACGTTAGCCTGTC 57.618 50.000 14.02 1.42 0.00 3.51
2050 2167 2.418334 GCTAGCCTTAACGTTAGCCTGT 60.418 50.000 14.02 1.72 34.00 4.00
2051 2168 2.202566 GCTAGCCTTAACGTTAGCCTG 58.797 52.381 14.02 9.39 34.00 4.85
2052 2169 1.829222 TGCTAGCCTTAACGTTAGCCT 59.171 47.619 13.29 11.24 38.14 4.58
2053 2170 1.931841 GTGCTAGCCTTAACGTTAGCC 59.068 52.381 13.29 5.26 38.14 3.93
2054 2171 2.889852 AGTGCTAGCCTTAACGTTAGC 58.110 47.619 13.29 9.66 39.11 3.09
2075 2192 1.598962 ACAGATTGCGCACACTGCT 60.599 52.632 30.16 19.79 42.25 4.24
2077 2194 1.208358 CCACAGATTGCGCACACTG 59.792 57.895 29.23 29.23 36.58 3.66
2161 2292 1.566563 CGCCGCTGCACATATTCTC 59.433 57.895 0.00 0.00 37.32 2.87
2186 2317 0.110238 CACGATGCCTTTTGTCCACG 60.110 55.000 0.00 0.00 0.00 4.94
2196 2327 1.153745 GAAGACGAGCACGATGCCT 60.154 57.895 11.40 0.00 46.52 4.75
2203 2334 2.811317 CGCCCAGAAGACGAGCAC 60.811 66.667 0.00 0.00 0.00 4.40
2225 2356 3.086600 CCTGGAGGGGCCTCAGAC 61.087 72.222 4.79 0.00 44.40 3.51
2234 2365 3.333219 TTGCTGGAGCCTGGAGGG 61.333 66.667 0.00 0.00 41.18 4.30
2265 2412 1.995484 CGGTCATATTCATAGGCGCAG 59.005 52.381 10.83 0.00 0.00 5.18
2266 2413 1.343142 ACGGTCATATTCATAGGCGCA 59.657 47.619 10.83 0.00 0.00 6.09
2267 2414 2.080286 ACGGTCATATTCATAGGCGC 57.920 50.000 0.00 0.00 0.00 6.53
2268 2415 5.418310 AAAAACGGTCATATTCATAGGCG 57.582 39.130 0.00 0.00 0.00 5.52
2269 2416 9.394477 GAAATAAAAACGGTCATATTCATAGGC 57.606 33.333 0.00 0.00 0.00 3.93
2270 2417 9.594038 CGAAATAAAAACGGTCATATTCATAGG 57.406 33.333 0.00 0.00 0.00 2.57
2274 2421 9.894783 TTTTCGAAATAAAAACGGTCATATTCA 57.105 25.926 12.12 0.00 0.00 2.57
2279 2426 8.980143 ATCATTTTCGAAATAAAAACGGTCAT 57.020 26.923 12.12 0.00 32.42 3.06
2280 2427 8.804688 AATCATTTTCGAAATAAAAACGGTCA 57.195 26.923 12.12 0.00 32.42 4.02
2282 2429 8.842777 CGTAATCATTTTCGAAATAAAAACGGT 58.157 29.630 12.12 0.00 32.42 4.83
2283 2430 9.053135 TCGTAATCATTTTCGAAATAAAAACGG 57.947 29.630 12.12 0.00 32.65 4.44
2304 2451 9.512435 GTGCTTTCTACTTACTATGAATCGTAA 57.488 33.333 0.00 0.00 0.00 3.18
2305 2452 8.133627 GGTGCTTTCTACTTACTATGAATCGTA 58.866 37.037 0.00 0.00 0.00 3.43
2306 2453 6.979238 GGTGCTTTCTACTTACTATGAATCGT 59.021 38.462 0.00 0.00 0.00 3.73
2307 2454 7.203910 AGGTGCTTTCTACTTACTATGAATCG 58.796 38.462 0.00 0.00 0.00 3.34
2308 2455 8.198109 TGAGGTGCTTTCTACTTACTATGAATC 58.802 37.037 0.00 0.00 0.00 2.52
2309 2456 8.079211 TGAGGTGCTTTCTACTTACTATGAAT 57.921 34.615 0.00 0.00 0.00 2.57
2310 2457 7.476540 TGAGGTGCTTTCTACTTACTATGAA 57.523 36.000 0.00 0.00 0.00 2.57
2311 2458 7.476540 TTGAGGTGCTTTCTACTTACTATGA 57.523 36.000 0.00 0.00 0.00 2.15
2312 2459 7.201444 CGTTTGAGGTGCTTTCTACTTACTATG 60.201 40.741 0.00 0.00 0.00 2.23
2313 2460 6.812160 CGTTTGAGGTGCTTTCTACTTACTAT 59.188 38.462 0.00 0.00 0.00 2.12
2314 2461 6.154445 CGTTTGAGGTGCTTTCTACTTACTA 58.846 40.000 0.00 0.00 0.00 1.82
2315 2462 4.989168 CGTTTGAGGTGCTTTCTACTTACT 59.011 41.667 0.00 0.00 0.00 2.24
2316 2463 4.377124 GCGTTTGAGGTGCTTTCTACTTAC 60.377 45.833 0.00 0.00 0.00 2.34
2317 2464 3.744426 GCGTTTGAGGTGCTTTCTACTTA 59.256 43.478 0.00 0.00 0.00 2.24
2318 2465 2.548480 GCGTTTGAGGTGCTTTCTACTT 59.452 45.455 0.00 0.00 0.00 2.24
2319 2466 2.143925 GCGTTTGAGGTGCTTTCTACT 58.856 47.619 0.00 0.00 0.00 2.57
2320 2467 1.871039 TGCGTTTGAGGTGCTTTCTAC 59.129 47.619 0.00 0.00 0.00 2.59
2321 2468 2.248280 TGCGTTTGAGGTGCTTTCTA 57.752 45.000 0.00 0.00 0.00 2.10
2322 2469 1.388547 TTGCGTTTGAGGTGCTTTCT 58.611 45.000 0.00 0.00 0.00 2.52
2323 2470 2.422276 ATTGCGTTTGAGGTGCTTTC 57.578 45.000 0.00 0.00 0.00 2.62
2324 2471 2.888834 AATTGCGTTTGAGGTGCTTT 57.111 40.000 0.00 0.00 0.00 3.51
2325 2472 2.100584 TGAAATTGCGTTTGAGGTGCTT 59.899 40.909 0.00 0.00 0.00 3.91
2326 2473 1.680735 TGAAATTGCGTTTGAGGTGCT 59.319 42.857 0.00 0.00 0.00 4.40
2327 2474 1.786579 GTGAAATTGCGTTTGAGGTGC 59.213 47.619 0.00 0.00 0.00 5.01
2328 2475 2.393764 GGTGAAATTGCGTTTGAGGTG 58.606 47.619 0.00 0.00 0.00 4.00
2329 2476 1.001815 CGGTGAAATTGCGTTTGAGGT 60.002 47.619 0.00 0.00 0.00 3.85
2330 2477 1.265635 TCGGTGAAATTGCGTTTGAGG 59.734 47.619 0.00 0.00 0.00 3.86
2331 2478 2.286713 TGTCGGTGAAATTGCGTTTGAG 60.287 45.455 0.00 0.00 0.00 3.02
2332 2479 1.671328 TGTCGGTGAAATTGCGTTTGA 59.329 42.857 0.00 0.00 0.00 2.69
2333 2480 2.112475 TGTCGGTGAAATTGCGTTTG 57.888 45.000 0.00 0.00 0.00 2.93
2334 2481 3.363341 AATGTCGGTGAAATTGCGTTT 57.637 38.095 0.00 0.00 0.00 3.60
2335 2482 3.363341 AAATGTCGGTGAAATTGCGTT 57.637 38.095 0.00 0.00 0.00 4.84
2336 2483 3.049206 CAAAATGTCGGTGAAATTGCGT 58.951 40.909 0.00 0.00 0.00 5.24
2337 2484 3.304257 TCAAAATGTCGGTGAAATTGCG 58.696 40.909 0.00 0.00 0.00 4.85
2338 2485 4.382754 GTCTCAAAATGTCGGTGAAATTGC 59.617 41.667 0.00 0.00 0.00 3.56
2339 2486 4.917415 GGTCTCAAAATGTCGGTGAAATTG 59.083 41.667 0.00 0.00 0.00 2.32
2340 2487 4.582656 TGGTCTCAAAATGTCGGTGAAATT 59.417 37.500 0.00 0.00 0.00 1.82
2341 2488 4.023193 GTGGTCTCAAAATGTCGGTGAAAT 60.023 41.667 0.00 0.00 0.00 2.17
2342 2489 3.314080 GTGGTCTCAAAATGTCGGTGAAA 59.686 43.478 0.00 0.00 0.00 2.69
2343 2490 2.875933 GTGGTCTCAAAATGTCGGTGAA 59.124 45.455 0.00 0.00 0.00 3.18
2344 2491 2.158885 TGTGGTCTCAAAATGTCGGTGA 60.159 45.455 0.00 0.00 0.00 4.02
2345 2492 2.217750 TGTGGTCTCAAAATGTCGGTG 58.782 47.619 0.00 0.00 0.00 4.94
2346 2493 2.616842 GTTGTGGTCTCAAAATGTCGGT 59.383 45.455 0.00 0.00 0.00 4.69
2347 2494 2.031157 GGTTGTGGTCTCAAAATGTCGG 60.031 50.000 0.00 0.00 0.00 4.79
2348 2495 2.616376 TGGTTGTGGTCTCAAAATGTCG 59.384 45.455 0.00 0.00 0.00 4.35
2349 2496 3.243401 GGTGGTTGTGGTCTCAAAATGTC 60.243 47.826 0.00 0.00 0.00 3.06
2350 2497 2.693074 GGTGGTTGTGGTCTCAAAATGT 59.307 45.455 0.00 0.00 0.00 2.71
2351 2498 2.692557 TGGTGGTTGTGGTCTCAAAATG 59.307 45.455 0.00 0.00 0.00 2.32
2352 2499 2.693074 GTGGTGGTTGTGGTCTCAAAAT 59.307 45.455 0.00 0.00 0.00 1.82
2353 2500 2.096248 GTGGTGGTTGTGGTCTCAAAA 58.904 47.619 0.00 0.00 0.00 2.44
2354 2501 1.683629 GGTGGTGGTTGTGGTCTCAAA 60.684 52.381 0.00 0.00 0.00 2.69
2355 2502 0.106918 GGTGGTGGTTGTGGTCTCAA 60.107 55.000 0.00 0.00 0.00 3.02
2356 2503 1.529796 GGTGGTGGTTGTGGTCTCA 59.470 57.895 0.00 0.00 0.00 3.27
2357 2504 1.597027 CGGTGGTGGTTGTGGTCTC 60.597 63.158 0.00 0.00 0.00 3.36
2358 2505 1.049855 TACGGTGGTGGTTGTGGTCT 61.050 55.000 0.00 0.00 0.00 3.85
2359 2506 0.601841 CTACGGTGGTGGTTGTGGTC 60.602 60.000 0.00 0.00 0.00 4.02
2360 2507 1.448497 CTACGGTGGTGGTTGTGGT 59.552 57.895 0.00 0.00 0.00 4.16
2361 2508 1.964373 GCTACGGTGGTGGTTGTGG 60.964 63.158 0.00 0.00 0.00 4.17
2362 2509 1.964373 GGCTACGGTGGTGGTTGTG 60.964 63.158 0.00 0.00 0.00 3.33
2363 2510 2.428622 GGCTACGGTGGTGGTTGT 59.571 61.111 0.00 0.00 0.00 3.32
2364 2511 2.740826 CGGCTACGGTGGTGGTTG 60.741 66.667 0.00 0.00 36.18 3.77
2375 2522 4.570663 ACATCGCGCTCCGGCTAC 62.571 66.667 5.56 0.00 37.59 3.58
2376 2523 3.833645 AACATCGCGCTCCGGCTA 61.834 61.111 5.56 0.00 37.59 3.93
2379 2526 3.554692 GACAACATCGCGCTCCGG 61.555 66.667 5.56 0.00 37.59 5.14
2380 2527 2.014093 GAAGACAACATCGCGCTCCG 62.014 60.000 5.56 0.00 38.61 4.63
2381 2528 1.710339 GAAGACAACATCGCGCTCC 59.290 57.895 5.56 0.00 0.00 4.70
2382 2529 1.341802 CGAAGACAACATCGCGCTC 59.658 57.895 5.56 0.00 31.03 5.03
2383 2530 3.463505 CGAAGACAACATCGCGCT 58.536 55.556 5.56 0.00 31.03 5.92
2387 2534 1.084370 GGGGAGCGAAGACAACATCG 61.084 60.000 0.00 0.00 39.69 3.84
2388 2535 0.250513 AGGGGAGCGAAGACAACATC 59.749 55.000 0.00 0.00 0.00 3.06
2389 2536 1.207329 GTAGGGGAGCGAAGACAACAT 59.793 52.381 0.00 0.00 0.00 2.71
2390 2537 0.606604 GTAGGGGAGCGAAGACAACA 59.393 55.000 0.00 0.00 0.00 3.33
2391 2538 0.108281 GGTAGGGGAGCGAAGACAAC 60.108 60.000 0.00 0.00 0.00 3.32
2392 2539 2.283824 GGTAGGGGAGCGAAGACAA 58.716 57.895 0.00 0.00 0.00 3.18
2393 2540 4.029472 GGTAGGGGAGCGAAGACA 57.971 61.111 0.00 0.00 0.00 3.41
2400 2547 2.062177 TTGGCTACGGTAGGGGAGC 61.062 63.158 16.43 4.37 0.00 4.70
2401 2548 0.686769 AGTTGGCTACGGTAGGGGAG 60.687 60.000 16.43 0.00 0.00 4.30
2402 2549 0.252375 AAGTTGGCTACGGTAGGGGA 60.252 55.000 16.43 0.00 0.00 4.81
2403 2550 0.107848 CAAGTTGGCTACGGTAGGGG 60.108 60.000 16.43 0.00 0.00 4.79
2404 2551 0.899720 TCAAGTTGGCTACGGTAGGG 59.100 55.000 16.43 0.00 0.00 3.53
2405 2552 2.550978 CATCAAGTTGGCTACGGTAGG 58.449 52.381 16.43 0.00 0.00 3.18
2406 2553 2.093658 ACCATCAAGTTGGCTACGGTAG 60.094 50.000 10.83 10.83 40.68 3.18
2407 2554 1.903860 ACCATCAAGTTGGCTACGGTA 59.096 47.619 2.34 0.00 40.68 4.02
2408 2555 0.690762 ACCATCAAGTTGGCTACGGT 59.309 50.000 2.34 0.35 40.68 4.83
2409 2556 1.086696 CACCATCAAGTTGGCTACGG 58.913 55.000 2.34 0.00 40.68 4.02
2410 2557 1.732259 GACACCATCAAGTTGGCTACG 59.268 52.381 2.34 0.00 40.68 3.51
2411 2558 2.778299 TGACACCATCAAGTTGGCTAC 58.222 47.619 2.34 0.00 40.68 3.58
2412 2559 3.500448 TTGACACCATCAAGTTGGCTA 57.500 42.857 2.34 0.00 42.62 3.93
2413 2560 2.363306 TTGACACCATCAAGTTGGCT 57.637 45.000 2.34 0.00 42.62 4.75
2421 2568 3.569277 CCAAACTGTCATTGACACCATCA 59.431 43.478 15.41 0.00 37.67 3.07
2422 2569 3.820467 TCCAAACTGTCATTGACACCATC 59.180 43.478 15.41 0.00 37.67 3.51
2423 2570 3.831323 TCCAAACTGTCATTGACACCAT 58.169 40.909 15.41 1.88 37.67 3.55
2424 2571 3.289407 TCCAAACTGTCATTGACACCA 57.711 42.857 15.41 0.00 37.67 4.17
2425 2572 4.228912 CTTCCAAACTGTCATTGACACC 57.771 45.455 15.41 0.00 37.67 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.