Multiple sequence alignment - TraesCS3D01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G311500 chr3D 100.000 6274 0 0 1 6274 426167351 426161078 0.000000e+00 11587.0
1 TraesCS3D01G311500 chr3D 95.289 4840 166 34 894 5718 531348412 531353204 0.000000e+00 7618.0
2 TraesCS3D01G311500 chr3D 96.623 4323 123 13 894 5207 464058761 464054453 0.000000e+00 7153.0
3 TraesCS3D01G311500 chr3D 89.421 898 55 12 1 893 464063474 464062612 0.000000e+00 1096.0
4 TraesCS3D01G311500 chr3D 83.996 931 65 27 3 893 531299183 531300069 0.000000e+00 817.0
5 TraesCS3D01G311500 chr3D 90.490 347 22 8 5246 5589 464054471 464054133 1.240000e-121 448.0
6 TraesCS3D01G311500 chr3D 88.268 179 12 7 5639 5817 464054134 464053965 8.240000e-49 206.0
7 TraesCS3D01G311500 chr3D 96.491 57 2 0 5839 5895 464053909 464053853 1.860000e-15 95.3
8 TraesCS3D01G311500 chr3A 96.724 4884 133 15 894 5760 665954613 665959486 0.000000e+00 8107.0
9 TraesCS3D01G311500 chr3A 86.936 643 44 17 1 627 665952361 665952979 0.000000e+00 686.0
10 TraesCS3D01G311500 chr2D 97.532 4619 98 3 992 5608 13211116 13215720 0.000000e+00 7884.0
11 TraesCS3D01G311500 chr2D 95.656 4765 168 23 1001 5760 380087283 380082553 0.000000e+00 7616.0
12 TraesCS3D01G311500 chr2D 96.071 3258 84 19 2571 5813 46679685 46682913 0.000000e+00 5267.0
13 TraesCS3D01G311500 chr2D 97.874 1693 36 0 894 2586 46677612 46679304 0.000000e+00 2928.0
14 TraesCS3D01G311500 chr2D 83.582 938 63 28 1 893 46673269 46674160 0.000000e+00 795.0
15 TraesCS3D01G311500 chr2D 87.153 288 30 5 894 1180 46675587 46675868 2.820000e-83 320.0
16 TraesCS3D01G311500 chr2D 89.855 69 3 4 894 961 380087360 380087295 1.120000e-12 86.1
17 TraesCS3D01G311500 chr3B 96.934 4468 112 8 894 5357 702682042 702686488 0.000000e+00 7468.0
18 TraesCS3D01G311500 chr3B 85.336 907 55 42 1 893 702679804 702680646 0.000000e+00 867.0
19 TraesCS3D01G311500 chr3B 81.312 503 58 21 5337 5813 702686509 702687001 5.940000e-100 375.0
20 TraesCS3D01G311500 chr6A 75.581 2580 585 39 1481 4036 169190094 169192652 0.000000e+00 1232.0
21 TraesCS3D01G311500 chr6A 91.111 135 10 2 4498 4632 456719549 456719681 1.390000e-41 182.0
22 TraesCS3D01G311500 chr6B 80.600 933 173 4 4285 5210 228693665 228694596 0.000000e+00 713.0
23 TraesCS3D01G311500 chr6B 87.156 109 14 0 4634 4742 504590213 504590105 2.370000e-24 124.0
24 TraesCS3D01G311500 chr4D 96.610 59 2 0 5957 6015 418748158 418748100 1.440000e-16 99.0
25 TraesCS3D01G311500 chr4D 97.368 38 1 0 6051 6088 418748101 418748064 1.460000e-06 65.8
26 TraesCS3D01G311500 chr2B 89.474 57 6 0 4943 4999 732894234 732894290 8.720000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G311500 chr3D 426161078 426167351 6273 True 11587.000000 11587 100.000000 1 6274 1 chr3D.!!$R1 6273
1 TraesCS3D01G311500 chr3D 531348412 531353204 4792 False 7618.000000 7618 95.289000 894 5718 1 chr3D.!!$F2 4824
2 TraesCS3D01G311500 chr3D 464053853 464063474 9621 True 1799.660000 7153 92.258600 1 5895 5 chr3D.!!$R2 5894
3 TraesCS3D01G311500 chr3D 531299183 531300069 886 False 817.000000 817 83.996000 3 893 1 chr3D.!!$F1 890
4 TraesCS3D01G311500 chr3A 665952361 665959486 7125 False 4396.500000 8107 91.830000 1 5760 2 chr3A.!!$F1 5759
5 TraesCS3D01G311500 chr2D 13211116 13215720 4604 False 7884.000000 7884 97.532000 992 5608 1 chr2D.!!$F1 4616
6 TraesCS3D01G311500 chr2D 380082553 380087360 4807 True 3851.050000 7616 92.755500 894 5760 2 chr2D.!!$R1 4866
7 TraesCS3D01G311500 chr2D 46673269 46682913 9644 False 2327.500000 5267 91.170000 1 5813 4 chr2D.!!$F2 5812
8 TraesCS3D01G311500 chr3B 702679804 702687001 7197 False 2903.333333 7468 87.860667 1 5813 3 chr3B.!!$F1 5812
9 TraesCS3D01G311500 chr6A 169190094 169192652 2558 False 1232.000000 1232 75.581000 1481 4036 1 chr6A.!!$F1 2555
10 TraesCS3D01G311500 chr6B 228693665 228694596 931 False 713.000000 713 80.600000 4285 5210 1 chr6B.!!$F1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 870 1.227823 CTGGGGTCGCAACTTCACA 60.228 57.895 0.00 0.0 0.00 3.58 F
2425 8612 1.457643 TCAGGGGGAGCATACCGAG 60.458 63.158 0.00 0.0 0.00 4.63 F
2714 9297 2.111384 GGTTCTGTCCCTGCTGAGATA 58.889 52.381 0.00 0.0 0.00 1.98 F
3833 10423 2.436173 CCATTTCTCAGGGACCCTAGAC 59.564 54.545 14.38 0.0 29.64 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2714 9297 0.610232 GCAGGGAGTTGCCTTGACAT 60.610 55.000 0.00 0.00 46.23 3.06 R
4276 10866 2.956132 TCCTTCCTAGGAGCTCATCAG 58.044 52.381 17.19 8.67 45.82 2.90 R
5075 11674 1.074405 AGGCAAGGATCAAACAGCTCA 59.926 47.619 0.00 0.00 0.00 4.26 R
6139 12877 0.035458 GGGCATCTATAACGCAGGCT 59.965 55.000 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 212 4.988716 ACGCCACTCCCTCGTCCA 62.989 66.667 0.00 0.00 0.00 4.02
364 404 1.375908 GCGTCTCCACATCTGGCAA 60.376 57.895 0.00 0.00 37.49 4.52
391 431 1.474077 GGTACGAACCTACCATGTCGT 59.526 52.381 10.96 10.96 43.08 4.34
456 498 1.442520 CAACAGCGGCATGGTTTCG 60.443 57.895 1.45 0.00 0.00 3.46
756 858 1.425694 GGGGTCTCTAATCTGGGGTC 58.574 60.000 0.00 0.00 0.00 4.46
767 870 1.227823 CTGGGGTCGCAACTTCACA 60.228 57.895 0.00 0.00 0.00 3.58
818 934 3.442100 CGTGACGGGTCTTCCTAATTAC 58.558 50.000 0.00 0.00 0.00 1.89
822 938 2.159142 ACGGGTCTTCCTAATTACAGCG 60.159 50.000 0.00 0.00 0.00 5.18
825 941 3.869832 GGGTCTTCCTAATTACAGCGTTC 59.130 47.826 0.00 0.00 0.00 3.95
827 943 3.550678 GTCTTCCTAATTACAGCGTTCGG 59.449 47.826 0.00 0.00 0.00 4.30
828 944 1.930567 TCCTAATTACAGCGTTCGGC 58.069 50.000 0.00 0.00 44.05 5.54
860 976 9.971922 CTTTTGGAGTTCTTGAACAATTATTCT 57.028 29.630 14.80 0.00 0.00 2.40
881 997 2.154462 ACATGCAAAGCTGTACTCACC 58.846 47.619 0.00 0.00 0.00 4.02
889 1005 1.886585 CTGTACTCACCGCAGAGCT 59.113 57.895 0.00 0.00 39.26 4.09
927 7110 2.691409 TTTCTGAGGGGAGCGTATTG 57.309 50.000 0.00 0.00 0.00 1.90
975 7158 6.159988 GTCTGCTGTATCTCTGTTGTAACTT 58.840 40.000 0.00 0.00 0.00 2.66
996 7179 1.586154 TAGCAGCAAAGAAAGGGCGC 61.586 55.000 0.00 0.00 0.00 6.53
1066 7249 5.659463 TGCTTGTACAACTTTTGATTGCTT 58.341 33.333 3.59 0.00 0.00 3.91
1124 7307 6.381481 TCTATAATGAGCAAGCCATTTGTG 57.619 37.500 11.91 5.55 39.08 3.33
1135 7318 3.230134 AGCCATTTGTGTTGAAGCCTTA 58.770 40.909 0.00 0.00 0.00 2.69
1141 7324 6.482973 CCATTTGTGTTGAAGCCTTAAACATT 59.517 34.615 10.54 0.00 36.31 2.71
1248 7431 5.096443 TGTGCCACATCACATAGAACATA 57.904 39.130 0.00 0.00 41.57 2.29
1296 7481 7.010023 GTGAAGATGACGAACTTTTGACATAC 58.990 38.462 0.00 0.00 29.28 2.39
1890 8077 3.201290 CATCTCACCAAGCTGTCCATAC 58.799 50.000 0.00 0.00 0.00 2.39
2425 8612 1.457643 TCAGGGGGAGCATACCGAG 60.458 63.158 0.00 0.00 0.00 4.63
2548 8735 3.951680 TCTTTTTCTGTGGAAGGGAACAC 59.048 43.478 0.00 0.00 38.08 3.32
2714 9297 2.111384 GGTTCTGTCCCTGCTGAGATA 58.889 52.381 0.00 0.00 0.00 1.98
3833 10423 2.436173 CCATTTCTCAGGGACCCTAGAC 59.564 54.545 14.38 0.00 29.64 2.59
5075 11674 2.501610 GCTCGCGGAAGGAGGAAT 59.498 61.111 6.13 0.00 32.10 3.01
5297 11899 0.037232 GGCCTCGTAGCACTGTTCTT 60.037 55.000 0.00 0.00 0.00 2.52
5298 11900 1.351153 GCCTCGTAGCACTGTTCTTC 58.649 55.000 0.00 0.00 0.00 2.87
5299 11901 1.067495 GCCTCGTAGCACTGTTCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
5305 11915 3.802139 CGTAGCACTGTTCTTCTTGACAA 59.198 43.478 0.00 0.00 0.00 3.18
5340 11953 3.845781 AATGTAGGCTGATGGTAGGTG 57.154 47.619 0.00 0.00 0.00 4.00
5396 12050 8.045176 AGATTGTAAAAGAGATAAACCAGTGC 57.955 34.615 0.00 0.00 0.00 4.40
5425 12079 0.976641 TCAGGCTGTAGTTGGGACAG 59.023 55.000 15.27 0.00 45.90 3.51
5579 12238 7.202016 TGGTAGTTCTAAGCTCATGTTTTTG 57.798 36.000 0.00 0.00 0.00 2.44
5581 12240 7.041372 TGGTAGTTCTAAGCTCATGTTTTTGTC 60.041 37.037 0.00 0.00 0.00 3.18
5598 12257 3.777106 TGTCTCTGTTTTGCCAGATCT 57.223 42.857 0.00 0.00 40.53 2.75
5610 12269 5.720371 TTGCCAGATCTAGAGCTCTTATC 57.280 43.478 23.84 22.86 0.00 1.75
5615 12274 5.882557 CCAGATCTAGAGCTCTTATCCTCTC 59.117 48.000 23.84 9.38 39.12 3.20
5621 12280 3.138653 AGAGCTCTTATCCTCTCCCGTTA 59.861 47.826 11.45 0.00 33.28 3.18
5622 12281 3.224269 AGCTCTTATCCTCTCCCGTTAC 58.776 50.000 0.00 0.00 0.00 2.50
5627 12286 1.108132 ATCCTCTCCCGTTACTCGCC 61.108 60.000 0.00 0.00 38.35 5.54
5629 12288 3.122250 CTCTCCCGTTACTCGCCGG 62.122 68.421 0.00 0.00 43.82 6.13
5630 12289 4.867599 CTCCCGTTACTCGCCGGC 62.868 72.222 19.07 19.07 42.87 6.13
5632 12291 4.446413 CCCGTTACTCGCCGGCTT 62.446 66.667 26.68 11.26 42.87 4.35
5633 12292 3.186047 CCGTTACTCGCCGGCTTG 61.186 66.667 26.68 18.98 37.43 4.01
5634 12293 3.849953 CGTTACTCGCCGGCTTGC 61.850 66.667 26.68 7.51 0.00 4.01
5635 12294 2.740826 GTTACTCGCCGGCTTGCA 60.741 61.111 26.68 4.45 0.00 4.08
5636 12295 2.434185 TTACTCGCCGGCTTGCAG 60.434 61.111 26.68 16.64 0.00 4.41
5663 12322 1.129437 GCTGCTTCCGCTTTAACTGAG 59.871 52.381 0.00 0.00 36.97 3.35
5667 12326 3.630312 TGCTTCCGCTTTAACTGAGTTTT 59.370 39.130 1.97 0.00 36.97 2.43
5668 12327 4.097286 TGCTTCCGCTTTAACTGAGTTTTT 59.903 37.500 1.97 0.00 36.97 1.94
5669 12328 4.675565 GCTTCCGCTTTAACTGAGTTTTTC 59.324 41.667 1.97 0.00 0.00 2.29
5722 12406 4.481368 ACCGGTTATGCTTATCTGTTCA 57.519 40.909 0.00 0.00 0.00 3.18
5738 12422 5.481200 CTGTTCACCAGAATATGCTCTTG 57.519 43.478 0.00 0.00 44.49 3.02
5739 12423 3.691118 TGTTCACCAGAATATGCTCTTGC 59.309 43.478 0.00 0.00 35.92 4.01
5740 12424 3.920231 TCACCAGAATATGCTCTTGCT 57.080 42.857 0.00 0.00 40.48 3.91
5741 12425 3.801698 TCACCAGAATATGCTCTTGCTC 58.198 45.455 0.00 0.00 40.48 4.26
5742 12426 3.453717 TCACCAGAATATGCTCTTGCTCT 59.546 43.478 0.00 0.00 40.48 4.09
5743 12427 4.080695 TCACCAGAATATGCTCTTGCTCTT 60.081 41.667 0.00 0.00 40.48 2.85
5751 12443 4.815533 ATGCTCTTGCTCTTCACTCTTA 57.184 40.909 0.00 0.00 40.48 2.10
5783 12487 4.322049 CCATACCATACTGGCAGTAGTAGC 60.322 50.000 29.14 0.00 42.67 3.58
5817 12521 1.467734 CCAGCTGAATGTTGAGCACTC 59.532 52.381 17.39 0.00 40.02 3.51
5818 12522 2.424557 CAGCTGAATGTTGAGCACTCT 58.575 47.619 8.42 0.00 40.02 3.24
5819 12523 2.812591 CAGCTGAATGTTGAGCACTCTT 59.187 45.455 8.42 0.00 40.02 2.85
5820 12524 3.999001 CAGCTGAATGTTGAGCACTCTTA 59.001 43.478 8.42 0.00 40.02 2.10
5821 12525 3.999663 AGCTGAATGTTGAGCACTCTTAC 59.000 43.478 6.95 0.00 40.02 2.34
5822 12526 3.126000 GCTGAATGTTGAGCACTCTTACC 59.874 47.826 0.00 0.00 37.37 2.85
5823 12527 4.318332 CTGAATGTTGAGCACTCTTACCA 58.682 43.478 0.00 0.00 0.00 3.25
5824 12528 4.065088 TGAATGTTGAGCACTCTTACCAC 58.935 43.478 0.00 0.00 0.00 4.16
5825 12529 4.202357 TGAATGTTGAGCACTCTTACCACT 60.202 41.667 0.00 0.00 0.00 4.00
5826 12530 3.838244 TGTTGAGCACTCTTACCACTT 57.162 42.857 0.00 0.00 0.00 3.16
5827 12531 4.948341 TGTTGAGCACTCTTACCACTTA 57.052 40.909 0.00 0.00 0.00 2.24
5828 12532 5.483685 TGTTGAGCACTCTTACCACTTAT 57.516 39.130 0.00 0.00 0.00 1.73
5829 12533 6.599356 TGTTGAGCACTCTTACCACTTATA 57.401 37.500 0.00 0.00 0.00 0.98
5830 12534 7.182817 TGTTGAGCACTCTTACCACTTATAT 57.817 36.000 0.00 0.00 0.00 0.86
5831 12535 7.620880 TGTTGAGCACTCTTACCACTTATATT 58.379 34.615 0.00 0.00 0.00 1.28
5832 12536 8.755028 TGTTGAGCACTCTTACCACTTATATTA 58.245 33.333 0.00 0.00 0.00 0.98
5834 12538 8.534954 TGAGCACTCTTACCACTTATATTAGT 57.465 34.615 0.00 0.00 0.00 2.24
5835 12539 8.978472 TGAGCACTCTTACCACTTATATTAGTT 58.022 33.333 0.00 0.00 0.00 2.24
5836 12540 9.819267 GAGCACTCTTACCACTTATATTAGTTT 57.181 33.333 0.00 0.00 0.00 2.66
5883 12621 1.212688 CAGGCCATCAGGAACACCATA 59.787 52.381 5.01 0.00 36.89 2.74
5888 12626 3.624707 GCCATCAGGAACACCATAAAGGA 60.625 47.826 0.00 0.00 37.83 3.36
5895 12633 5.009210 CAGGAACACCATAAAGGAAAACGAA 59.991 40.000 0.00 0.00 41.22 3.85
5896 12634 5.009310 AGGAACACCATAAAGGAAAACGAAC 59.991 40.000 0.00 0.00 41.22 3.95
5897 12635 5.009310 GGAACACCATAAAGGAAAACGAACT 59.991 40.000 0.00 0.00 41.22 3.01
5898 12636 6.205270 GGAACACCATAAAGGAAAACGAACTA 59.795 38.462 0.00 0.00 41.22 2.24
5899 12637 7.255208 GGAACACCATAAAGGAAAACGAACTAA 60.255 37.037 0.00 0.00 41.22 2.24
5900 12638 7.754851 ACACCATAAAGGAAAACGAACTAAT 57.245 32.000 0.00 0.00 41.22 1.73
5901 12639 7.590279 ACACCATAAAGGAAAACGAACTAATG 58.410 34.615 0.00 0.00 41.22 1.90
5902 12640 7.229907 ACACCATAAAGGAAAACGAACTAATGT 59.770 33.333 0.00 0.00 41.22 2.71
5903 12641 8.723311 CACCATAAAGGAAAACGAACTAATGTA 58.277 33.333 0.00 0.00 41.22 2.29
5904 12642 9.287373 ACCATAAAGGAAAACGAACTAATGTAA 57.713 29.630 0.00 0.00 41.22 2.41
5916 12654 9.498176 AACGAACTAATGTAAAAGTATGAACCT 57.502 29.630 0.00 0.00 0.00 3.50
5917 12655 9.148104 ACGAACTAATGTAAAAGTATGAACCTC 57.852 33.333 0.00 0.00 0.00 3.85
5918 12656 9.367444 CGAACTAATGTAAAAGTATGAACCTCT 57.633 33.333 0.00 0.00 0.00 3.69
5925 12663 9.784531 ATGTAAAAGTATGAACCTCTCATATGG 57.215 33.333 2.13 0.00 46.39 2.74
5926 12664 8.768397 TGTAAAAGTATGAACCTCTCATATGGT 58.232 33.333 2.13 0.00 46.39 3.55
5927 12665 9.262358 GTAAAAGTATGAACCTCTCATATGGTC 57.738 37.037 2.13 0.00 46.39 4.02
5928 12666 7.682787 AAAGTATGAACCTCTCATATGGTCT 57.317 36.000 2.13 0.00 46.39 3.85
5929 12667 8.783660 AAAGTATGAACCTCTCATATGGTCTA 57.216 34.615 2.13 0.00 46.39 2.59
5930 12668 7.768807 AGTATGAACCTCTCATATGGTCTAC 57.231 40.000 2.13 0.00 46.39 2.59
5931 12669 6.722129 AGTATGAACCTCTCATATGGTCTACC 59.278 42.308 2.13 0.00 46.39 3.18
5932 12670 5.467738 ATGAACCTCTCATATGGTCTACCA 58.532 41.667 3.91 3.91 43.32 3.25
5933 12671 5.305644 ATGAACCTCTCATATGGTCTACCAC 59.694 44.000 3.43 0.00 43.32 4.16
5934 12672 6.868879 ATGAACCTCTCATATGGTCTACCACT 60.869 42.308 3.43 0.00 43.32 4.00
5935 12673 8.301685 ATGAACCTCTCATATGGTCTACCACTT 61.302 40.741 3.43 0.00 43.32 3.16
5944 12682 4.055710 TGGTCTACCACTTACATCAGGA 57.944 45.455 0.00 0.00 42.01 3.86
5945 12683 4.422057 TGGTCTACCACTTACATCAGGAA 58.578 43.478 0.00 0.00 42.01 3.36
5946 12684 4.222145 TGGTCTACCACTTACATCAGGAAC 59.778 45.833 0.00 0.00 42.01 3.62
5947 12685 4.222145 GGTCTACCACTTACATCAGGAACA 59.778 45.833 0.00 0.00 35.64 3.18
5948 12686 5.169295 GTCTACCACTTACATCAGGAACAC 58.831 45.833 0.00 0.00 0.00 3.32
5949 12687 3.418684 ACCACTTACATCAGGAACACC 57.581 47.619 0.00 0.00 0.00 4.16
5950 12688 2.708861 ACCACTTACATCAGGAACACCA 59.291 45.455 0.00 0.00 0.00 4.17
5951 12689 3.330701 ACCACTTACATCAGGAACACCAT 59.669 43.478 0.00 0.00 0.00 3.55
5952 12690 4.534500 ACCACTTACATCAGGAACACCATA 59.466 41.667 0.00 0.00 0.00 2.74
5953 12691 5.191722 ACCACTTACATCAGGAACACCATAT 59.808 40.000 0.00 0.00 0.00 1.78
5954 12692 5.528690 CCACTTACATCAGGAACACCATATG 59.471 44.000 0.00 0.00 0.00 1.78
5955 12693 5.528690 CACTTACATCAGGAACACCATATGG 59.471 44.000 20.68 20.68 42.17 2.74
5970 12708 5.832539 CCATATGGTACCAGATTTCCTCT 57.167 43.478 19.45 1.53 33.14 3.69
5971 12709 6.935240 CCATATGGTACCAGATTTCCTCTA 57.065 41.667 19.45 3.93 31.13 2.43
5972 12710 7.502060 CCATATGGTACCAGATTTCCTCTAT 57.498 40.000 19.45 6.20 31.13 1.98
5973 12711 7.922382 CCATATGGTACCAGATTTCCTCTATT 58.078 38.462 19.45 0.00 31.13 1.73
5974 12712 8.386264 CCATATGGTACCAGATTTCCTCTATTT 58.614 37.037 19.45 0.00 31.13 1.40
5975 12713 9.799106 CATATGGTACCAGATTTCCTCTATTTT 57.201 33.333 19.45 0.00 31.13 1.82
5998 12736 2.585247 GCTTACACTAGCGCCCGG 60.585 66.667 2.29 0.00 0.00 5.73
5999 12737 2.585247 CTTACACTAGCGCCCGGC 60.585 66.667 2.29 0.00 44.05 6.13
6010 12748 3.435186 GCCCGGCTCAGCTCAAAC 61.435 66.667 0.71 0.00 0.00 2.93
6011 12749 2.032528 CCCGGCTCAGCTCAAACA 59.967 61.111 0.00 0.00 0.00 2.83
6012 12750 1.600636 CCCGGCTCAGCTCAAACAA 60.601 57.895 0.00 0.00 0.00 2.83
6013 12751 1.172180 CCCGGCTCAGCTCAAACAAA 61.172 55.000 0.00 0.00 0.00 2.83
6014 12752 0.040067 CCGGCTCAGCTCAAACAAAC 60.040 55.000 0.00 0.00 0.00 2.93
6015 12753 0.947244 CGGCTCAGCTCAAACAAACT 59.053 50.000 0.00 0.00 0.00 2.66
6016 12754 1.069636 CGGCTCAGCTCAAACAAACTC 60.070 52.381 0.00 0.00 0.00 3.01
6017 12755 1.949525 GGCTCAGCTCAAACAAACTCA 59.050 47.619 0.00 0.00 0.00 3.41
6018 12756 2.555757 GGCTCAGCTCAAACAAACTCAT 59.444 45.455 0.00 0.00 0.00 2.90
6019 12757 3.562505 GCTCAGCTCAAACAAACTCATG 58.437 45.455 0.00 0.00 0.00 3.07
6020 12758 3.562505 CTCAGCTCAAACAAACTCATGC 58.437 45.455 0.00 0.00 0.00 4.06
6021 12759 2.031769 TCAGCTCAAACAAACTCATGCG 60.032 45.455 0.00 0.00 0.00 4.73
6022 12760 2.031769 CAGCTCAAACAAACTCATGCGA 60.032 45.455 0.00 0.00 0.00 5.10
6023 12761 2.225019 AGCTCAAACAAACTCATGCGAG 59.775 45.455 0.00 0.00 45.49 5.03
6024 12762 2.224079 GCTCAAACAAACTCATGCGAGA 59.776 45.455 0.00 0.00 42.34 4.04
6025 12763 3.303990 GCTCAAACAAACTCATGCGAGAA 60.304 43.478 0.00 0.00 42.34 2.87
6026 12764 4.789481 GCTCAAACAAACTCATGCGAGAAA 60.789 41.667 0.00 0.00 42.34 2.52
6027 12765 5.242069 TCAAACAAACTCATGCGAGAAAA 57.758 34.783 0.00 0.00 42.34 2.29
6028 12766 5.645624 TCAAACAAACTCATGCGAGAAAAA 58.354 33.333 0.00 0.00 42.34 1.94
6045 12783 1.886886 AAAAAGAACTAAGCGCCCGA 58.113 45.000 2.29 0.00 0.00 5.14
6046 12784 2.109425 AAAAGAACTAAGCGCCCGAT 57.891 45.000 2.29 0.00 0.00 4.18
6047 12785 1.369625 AAAGAACTAAGCGCCCGATG 58.630 50.000 2.29 0.00 0.00 3.84
6048 12786 0.535335 AAGAACTAAGCGCCCGATGA 59.465 50.000 2.29 0.00 0.00 2.92
6049 12787 0.179108 AGAACTAAGCGCCCGATGAC 60.179 55.000 2.29 0.00 0.00 3.06
6050 12788 0.459585 GAACTAAGCGCCCGATGACA 60.460 55.000 2.29 0.00 0.00 3.58
6051 12789 0.739813 AACTAAGCGCCCGATGACAC 60.740 55.000 2.29 0.00 0.00 3.67
6052 12790 1.153647 CTAAGCGCCCGATGACACA 60.154 57.895 2.29 0.00 0.00 3.72
6053 12791 0.739462 CTAAGCGCCCGATGACACAA 60.739 55.000 2.29 0.00 0.00 3.33
6054 12792 0.739462 TAAGCGCCCGATGACACAAG 60.739 55.000 2.29 0.00 0.00 3.16
6055 12793 4.166011 GCGCCCGATGACACAAGC 62.166 66.667 0.00 0.00 0.00 4.01
6056 12794 3.853330 CGCCCGATGACACAAGCG 61.853 66.667 0.00 0.00 37.39 4.68
6057 12795 3.499737 GCCCGATGACACAAGCGG 61.500 66.667 0.00 0.00 43.20 5.52
6058 12796 3.499737 CCCGATGACACAAGCGGC 61.500 66.667 0.00 0.00 42.29 6.53
6059 12797 3.853330 CCGATGACACAAGCGGCG 61.853 66.667 0.51 0.51 37.08 6.46
6060 12798 3.112075 CGATGACACAAGCGGCGT 61.112 61.111 9.37 0.00 0.00 5.68
6061 12799 2.778679 GATGACACAAGCGGCGTC 59.221 61.111 9.37 0.13 0.00 5.19
6062 12800 3.071459 GATGACACAAGCGGCGTCG 62.071 63.158 4.29 4.29 39.81 5.12
6063 12801 3.567478 ATGACACAAGCGGCGTCGA 62.567 57.895 16.53 0.00 39.00 4.20
6064 12802 3.764049 GACACAAGCGGCGTCGAC 61.764 66.667 16.53 5.18 39.00 4.20
6088 12826 1.531748 TGGAAATCCCAGGATCGGC 59.468 57.895 0.00 0.00 40.82 5.54
6089 12827 1.228276 GGAAATCCCAGGATCGGCC 60.228 63.158 0.00 0.00 33.08 6.13
6090 12828 1.531748 GAAATCCCAGGATCGGCCA 59.468 57.895 2.24 0.00 40.02 5.36
6091 12829 0.536006 GAAATCCCAGGATCGGCCAG 60.536 60.000 2.24 0.00 40.02 4.85
6092 12830 1.999634 AAATCCCAGGATCGGCCAGG 62.000 60.000 2.24 0.63 42.81 4.45
6093 12831 2.914734 AATCCCAGGATCGGCCAGGA 62.915 60.000 2.24 8.34 45.96 3.86
6094 12832 2.914734 ATCCCAGGATCGGCCAGGAA 62.915 60.000 2.24 0.00 45.96 3.36
6095 12833 2.455565 CCCAGGATCGGCCAGGAAT 61.456 63.158 2.24 0.00 45.96 3.01
6096 12834 1.072159 CCAGGATCGGCCAGGAATC 59.928 63.158 2.24 0.00 45.96 2.52
6097 12835 1.301244 CAGGATCGGCCAGGAATCG 60.301 63.158 2.24 0.00 40.02 3.34
6098 12836 1.457643 AGGATCGGCCAGGAATCGA 60.458 57.895 2.24 0.00 40.02 3.59
6099 12837 0.833834 AGGATCGGCCAGGAATCGAT 60.834 55.000 2.24 11.12 44.83 3.59
6101 12839 0.734253 GATCGGCCAGGAATCGATCG 60.734 60.000 9.36 9.36 45.89 3.69
6102 12840 1.179174 ATCGGCCAGGAATCGATCGA 61.179 55.000 21.86 21.86 39.05 3.59
6103 12841 1.372251 CGGCCAGGAATCGATCGAG 60.372 63.158 23.84 9.60 0.00 4.04
6104 12842 1.796190 CGGCCAGGAATCGATCGAGA 61.796 60.000 23.84 0.68 0.00 4.04
6105 12843 0.319125 GGCCAGGAATCGATCGAGAC 60.319 60.000 23.84 17.97 0.00 3.36
6106 12844 0.661780 GCCAGGAATCGATCGAGACG 60.662 60.000 23.84 9.52 0.00 4.18
6107 12845 0.039978 CCAGGAATCGATCGAGACGG 60.040 60.000 23.84 14.43 0.00 4.79
6108 12846 0.661780 CAGGAATCGATCGAGACGGC 60.662 60.000 23.84 9.95 0.00 5.68
6109 12847 1.371881 GGAATCGATCGAGACGGCC 60.372 63.158 23.84 14.83 0.00 6.13
6110 12848 1.359117 GAATCGATCGAGACGGCCA 59.641 57.895 23.84 0.00 0.00 5.36
6111 12849 0.661780 GAATCGATCGAGACGGCCAG 60.662 60.000 23.84 0.00 0.00 4.85
6112 12850 2.076622 AATCGATCGAGACGGCCAGG 62.077 60.000 23.84 0.00 0.00 4.45
6113 12851 2.960359 ATCGATCGAGACGGCCAGGA 62.960 60.000 23.84 0.00 0.00 3.86
6114 12852 2.413765 GATCGAGACGGCCAGGAC 59.586 66.667 2.24 0.00 0.00 3.85
6115 12853 2.043852 ATCGAGACGGCCAGGACT 60.044 61.111 2.24 0.00 0.00 3.85
6116 12854 2.343163 GATCGAGACGGCCAGGACTG 62.343 65.000 2.24 0.00 0.00 3.51
6125 12863 4.382852 CCAGGACTGGGACCCTAG 57.617 66.667 13.00 10.08 46.81 3.02
6126 12864 1.392534 CCAGGACTGGGACCCTAGT 59.607 63.158 13.00 13.34 46.81 2.57
6127 12865 0.978146 CCAGGACTGGGACCCTAGTG 60.978 65.000 17.31 6.24 46.81 2.74
6128 12866 1.306226 AGGACTGGGACCCTAGTGC 60.306 63.158 19.95 19.95 35.75 4.40
6129 12867 1.306226 GGACTGGGACCCTAGTGCT 60.306 63.158 20.14 1.06 34.17 4.40
6130 12868 1.331399 GGACTGGGACCCTAGTGCTC 61.331 65.000 20.14 8.60 34.17 4.26
6131 12869 0.614979 GACTGGGACCCTAGTGCTCA 60.615 60.000 17.31 0.00 34.17 4.26
6132 12870 0.043334 ACTGGGACCCTAGTGCTCAT 59.957 55.000 13.00 0.00 34.17 2.90
6133 12871 0.755686 CTGGGACCCTAGTGCTCATC 59.244 60.000 13.00 0.00 34.17 2.92
6134 12872 0.691078 TGGGACCCTAGTGCTCATCC 60.691 60.000 13.00 0.00 34.17 3.51
6135 12873 0.399233 GGGACCCTAGTGCTCATCCT 60.399 60.000 2.09 0.00 34.17 3.24
6136 12874 1.133136 GGGACCCTAGTGCTCATCCTA 60.133 57.143 2.09 0.00 34.17 2.94
6137 12875 2.679082 GGACCCTAGTGCTCATCCTAA 58.321 52.381 0.00 0.00 0.00 2.69
6138 12876 2.630580 GGACCCTAGTGCTCATCCTAAG 59.369 54.545 0.00 0.00 0.00 2.18
6139 12877 3.567397 GACCCTAGTGCTCATCCTAAGA 58.433 50.000 0.00 0.00 0.00 2.10
6140 12878 3.571590 ACCCTAGTGCTCATCCTAAGAG 58.428 50.000 0.00 0.00 36.21 2.85
6146 12884 3.584586 CTCATCCTAAGAGCCTGCG 57.415 57.895 0.00 0.00 0.00 5.18
6147 12885 0.749649 CTCATCCTAAGAGCCTGCGT 59.250 55.000 0.00 0.00 0.00 5.24
6148 12886 1.137872 CTCATCCTAAGAGCCTGCGTT 59.862 52.381 0.00 0.00 0.00 4.84
6149 12887 2.362397 CTCATCCTAAGAGCCTGCGTTA 59.638 50.000 0.00 0.00 0.00 3.18
6150 12888 2.965831 TCATCCTAAGAGCCTGCGTTAT 59.034 45.455 0.00 0.00 0.00 1.89
6151 12889 4.149598 TCATCCTAAGAGCCTGCGTTATA 58.850 43.478 0.00 0.00 0.00 0.98
6152 12890 4.218635 TCATCCTAAGAGCCTGCGTTATAG 59.781 45.833 0.00 0.00 0.00 1.31
6153 12891 3.828921 TCCTAAGAGCCTGCGTTATAGA 58.171 45.455 0.00 0.00 0.00 1.98
6154 12892 4.408276 TCCTAAGAGCCTGCGTTATAGAT 58.592 43.478 0.00 0.00 0.00 1.98
6155 12893 4.218635 TCCTAAGAGCCTGCGTTATAGATG 59.781 45.833 0.00 0.00 0.00 2.90
6156 12894 2.447244 AGAGCCTGCGTTATAGATGC 57.553 50.000 0.00 0.00 40.83 3.91
6157 12895 1.001406 AGAGCCTGCGTTATAGATGCC 59.999 52.381 0.00 0.00 39.64 4.40
6158 12896 0.035458 AGCCTGCGTTATAGATGCCC 59.965 55.000 0.00 0.00 39.64 5.36
6159 12897 0.035458 GCCTGCGTTATAGATGCCCT 59.965 55.000 0.00 0.00 39.64 5.19
6160 12898 1.543429 GCCTGCGTTATAGATGCCCTT 60.543 52.381 0.00 0.00 39.64 3.95
6161 12899 2.289444 GCCTGCGTTATAGATGCCCTTA 60.289 50.000 0.00 0.00 39.64 2.69
6162 12900 3.589988 CCTGCGTTATAGATGCCCTTAG 58.410 50.000 0.00 0.00 39.64 2.18
6163 12901 3.589988 CTGCGTTATAGATGCCCTTAGG 58.410 50.000 0.00 0.00 39.64 2.69
6164 12902 3.236047 TGCGTTATAGATGCCCTTAGGA 58.764 45.455 0.00 0.00 39.64 2.94
6165 12903 3.258372 TGCGTTATAGATGCCCTTAGGAG 59.742 47.826 0.00 0.00 39.64 3.69
6166 12904 3.368531 GCGTTATAGATGCCCTTAGGAGG 60.369 52.174 0.00 0.00 43.15 4.30
6167 12905 4.087182 CGTTATAGATGCCCTTAGGAGGA 58.913 47.826 0.00 0.00 46.74 3.71
6168 12906 4.527038 CGTTATAGATGCCCTTAGGAGGAA 59.473 45.833 0.00 0.00 46.74 3.36
6169 12907 5.336849 CGTTATAGATGCCCTTAGGAGGAAG 60.337 48.000 0.00 0.00 46.74 3.46
6170 12908 2.877154 AGATGCCCTTAGGAGGAAGA 57.123 50.000 0.00 0.00 46.74 2.87
6171 12909 3.359110 AGATGCCCTTAGGAGGAAGAT 57.641 47.619 0.00 0.00 46.74 2.40
6172 12910 3.674477 AGATGCCCTTAGGAGGAAGATT 58.326 45.455 0.00 0.00 46.74 2.40
6173 12911 3.393941 AGATGCCCTTAGGAGGAAGATTG 59.606 47.826 0.00 0.00 46.74 2.67
6174 12912 1.212935 TGCCCTTAGGAGGAAGATTGC 59.787 52.381 0.00 0.00 46.74 3.56
6175 12913 1.212935 GCCCTTAGGAGGAAGATTGCA 59.787 52.381 0.00 0.00 46.74 4.08
6176 12914 2.747799 GCCCTTAGGAGGAAGATTGCAG 60.748 54.545 0.00 0.00 46.74 4.41
6177 12915 2.570135 CCTTAGGAGGAAGATTGCAGC 58.430 52.381 0.00 0.00 46.74 5.25
6178 12916 2.172293 CCTTAGGAGGAAGATTGCAGCT 59.828 50.000 0.00 0.00 46.74 4.24
6179 12917 2.996249 TAGGAGGAAGATTGCAGCTG 57.004 50.000 10.11 10.11 0.00 4.24
6180 12918 0.990374 AGGAGGAAGATTGCAGCTGT 59.010 50.000 16.64 0.00 0.00 4.40
6181 12919 1.093159 GGAGGAAGATTGCAGCTGTG 58.907 55.000 16.64 0.00 0.00 3.66
6190 12928 2.028043 GCAGCTGTGCCAACCAAC 59.972 61.111 16.64 0.00 44.72 3.77
6191 12929 2.730094 CAGCTGTGCCAACCAACC 59.270 61.111 5.25 0.00 0.00 3.77
6192 12930 2.521708 AGCTGTGCCAACCAACCC 60.522 61.111 0.00 0.00 0.00 4.11
6193 12931 2.521708 GCTGTGCCAACCAACCCT 60.522 61.111 0.00 0.00 0.00 4.34
6194 12932 2.133641 GCTGTGCCAACCAACCCTT 61.134 57.895 0.00 0.00 0.00 3.95
6195 12933 1.685355 GCTGTGCCAACCAACCCTTT 61.685 55.000 0.00 0.00 0.00 3.11
6196 12934 0.104671 CTGTGCCAACCAACCCTTTG 59.895 55.000 0.00 0.00 0.00 2.77
6197 12935 0.324738 TGTGCCAACCAACCCTTTGA 60.325 50.000 0.00 0.00 34.24 2.69
6198 12936 0.827368 GTGCCAACCAACCCTTTGAA 59.173 50.000 0.00 0.00 34.24 2.69
6199 12937 1.208293 GTGCCAACCAACCCTTTGAAA 59.792 47.619 0.00 0.00 34.24 2.69
6200 12938 1.909302 TGCCAACCAACCCTTTGAAAA 59.091 42.857 0.00 0.00 34.24 2.29
6201 12939 2.305927 TGCCAACCAACCCTTTGAAAAA 59.694 40.909 0.00 0.00 34.24 1.94
6202 12940 3.054065 TGCCAACCAACCCTTTGAAAAAT 60.054 39.130 0.00 0.00 34.24 1.82
6203 12941 3.563808 GCCAACCAACCCTTTGAAAAATC 59.436 43.478 0.00 0.00 34.24 2.17
6204 12942 4.775236 CCAACCAACCCTTTGAAAAATCA 58.225 39.130 0.00 0.00 34.24 2.57
6205 12943 5.375773 CCAACCAACCCTTTGAAAAATCAT 58.624 37.500 0.00 0.00 34.24 2.45
6206 12944 5.239087 CCAACCAACCCTTTGAAAAATCATG 59.761 40.000 0.00 0.00 34.24 3.07
6207 12945 5.628797 ACCAACCCTTTGAAAAATCATGT 57.371 34.783 0.00 0.00 34.24 3.21
6208 12946 5.367302 ACCAACCCTTTGAAAAATCATGTG 58.633 37.500 0.00 0.00 34.24 3.21
6209 12947 4.213906 CCAACCCTTTGAAAAATCATGTGC 59.786 41.667 0.00 0.00 34.24 4.57
6210 12948 4.961438 ACCCTTTGAAAAATCATGTGCT 57.039 36.364 0.00 0.00 0.00 4.40
6211 12949 5.294734 ACCCTTTGAAAAATCATGTGCTT 57.705 34.783 0.00 0.00 0.00 3.91
6212 12950 5.683681 ACCCTTTGAAAAATCATGTGCTTT 58.316 33.333 0.00 0.00 0.00 3.51
6213 12951 5.528320 ACCCTTTGAAAAATCATGTGCTTTG 59.472 36.000 0.00 0.00 0.00 2.77
6214 12952 5.528320 CCCTTTGAAAAATCATGTGCTTTGT 59.472 36.000 0.00 0.00 0.00 2.83
6215 12953 6.705381 CCCTTTGAAAAATCATGTGCTTTGTA 59.295 34.615 0.00 0.00 0.00 2.41
6216 12954 7.388500 CCCTTTGAAAAATCATGTGCTTTGTAT 59.612 33.333 0.00 0.00 0.00 2.29
6217 12955 8.225107 CCTTTGAAAAATCATGTGCTTTGTATG 58.775 33.333 0.00 0.00 0.00 2.39
6218 12956 6.709145 TGAAAAATCATGTGCTTTGTATGC 57.291 33.333 0.00 0.00 0.00 3.14
6219 12957 6.221659 TGAAAAATCATGTGCTTTGTATGCA 58.778 32.000 0.00 0.00 38.19 3.96
6228 12966 2.483877 TGCTTTGTATGCACTTCTTCCG 59.516 45.455 0.00 0.00 35.31 4.30
6229 12967 2.484264 GCTTTGTATGCACTTCTTCCGT 59.516 45.455 0.00 0.00 0.00 4.69
6230 12968 3.058224 GCTTTGTATGCACTTCTTCCGTT 60.058 43.478 0.00 0.00 0.00 4.44
6231 12969 4.712763 CTTTGTATGCACTTCTTCCGTTC 58.287 43.478 0.00 0.00 0.00 3.95
6232 12970 2.695359 TGTATGCACTTCTTCCGTTCC 58.305 47.619 0.00 0.00 0.00 3.62
6233 12971 1.659098 GTATGCACTTCTTCCGTTCCG 59.341 52.381 0.00 0.00 0.00 4.30
6234 12972 0.320374 ATGCACTTCTTCCGTTCCGA 59.680 50.000 0.00 0.00 0.00 4.55
6235 12973 0.105224 TGCACTTCTTCCGTTCCGAA 59.895 50.000 0.00 0.00 0.00 4.30
6236 12974 1.223187 GCACTTCTTCCGTTCCGAAA 58.777 50.000 0.00 0.00 0.00 3.46
6237 12975 1.804748 GCACTTCTTCCGTTCCGAAAT 59.195 47.619 0.00 0.00 0.00 2.17
6238 12976 2.412847 GCACTTCTTCCGTTCCGAAATG 60.413 50.000 0.00 0.00 0.00 2.32
6239 12977 2.806244 CACTTCTTCCGTTCCGAAATGT 59.194 45.455 0.00 0.00 0.00 2.71
6240 12978 3.250040 CACTTCTTCCGTTCCGAAATGTT 59.750 43.478 0.00 0.00 0.00 2.71
6241 12979 3.881089 ACTTCTTCCGTTCCGAAATGTTT 59.119 39.130 0.00 0.00 0.00 2.83
6242 12980 4.337274 ACTTCTTCCGTTCCGAAATGTTTT 59.663 37.500 0.00 0.00 0.00 2.43
6243 12981 4.904253 TCTTCCGTTCCGAAATGTTTTT 57.096 36.364 0.00 0.00 0.00 1.94
6244 12982 4.602995 TCTTCCGTTCCGAAATGTTTTTG 58.397 39.130 0.00 0.00 0.00 2.44
6245 12983 4.335874 TCTTCCGTTCCGAAATGTTTTTGA 59.664 37.500 0.00 0.00 0.00 2.69
6246 12984 4.839668 TCCGTTCCGAAATGTTTTTGAT 57.160 36.364 0.00 0.00 0.00 2.57
6247 12985 5.943706 TCCGTTCCGAAATGTTTTTGATA 57.056 34.783 0.00 0.00 0.00 2.15
6248 12986 6.503589 TCCGTTCCGAAATGTTTTTGATAT 57.496 33.333 0.00 0.00 0.00 1.63
6249 12987 6.915349 TCCGTTCCGAAATGTTTTTGATATT 58.085 32.000 0.00 0.00 0.00 1.28
6250 12988 7.371936 TCCGTTCCGAAATGTTTTTGATATTT 58.628 30.769 0.00 0.00 32.49 1.40
6251 12989 7.539366 TCCGTTCCGAAATGTTTTTGATATTTC 59.461 33.333 0.00 0.00 40.48 2.17
6252 12990 7.327275 CCGTTCCGAAATGTTTTTGATATTTCA 59.673 33.333 0.00 0.00 42.64 2.69
6253 12991 8.695284 CGTTCCGAAATGTTTTTGATATTTCAA 58.305 29.630 0.00 0.00 42.64 2.69
6272 13010 7.985634 TTTCAATATTAACTACGTACCGACC 57.014 36.000 0.00 0.00 0.00 4.79
6273 13011 5.747565 TCAATATTAACTACGTACCGACCG 58.252 41.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 200 2.362369 CCTGCATGGACGAGGGAGT 61.362 63.158 0.00 0.00 38.35 3.85
410 450 2.942710 TCCGAGATGACGAGAACAAAC 58.057 47.619 0.00 0.00 35.09 2.93
456 498 0.034337 TTGACAGCAACCGGTCTACC 59.966 55.000 8.04 0.00 37.13 3.18
465 507 4.158384 CCACAACGATATTTGACAGCAAC 58.842 43.478 0.00 0.00 32.79 4.17
740 839 1.112113 TGCGACCCCAGATTAGAGAC 58.888 55.000 0.00 0.00 0.00 3.36
756 858 3.343972 CACCCCTGTGAAGTTGCG 58.656 61.111 0.00 0.00 45.76 4.85
767 870 1.912043 CAGTGATCTTCCTTCACCCCT 59.088 52.381 0.00 0.00 43.62 4.79
774 877 2.305343 AGAAGCTGCAGTGATCTTCCTT 59.695 45.455 21.22 11.88 36.50 3.36
779 882 0.175302 CGGAGAAGCTGCAGTGATCT 59.825 55.000 16.64 15.68 0.00 2.75
818 934 1.421410 AAAGCTATCGCCGAACGCTG 61.421 55.000 13.09 0.00 43.23 5.18
822 938 1.327764 CTCCAAAAGCTATCGCCGAAC 59.672 52.381 0.00 0.00 36.60 3.95
825 941 1.327764 GAACTCCAAAAGCTATCGCCG 59.672 52.381 0.00 0.00 36.60 6.46
827 943 3.684788 TCAAGAACTCCAAAAGCTATCGC 59.315 43.478 0.00 0.00 0.00 4.58
828 944 5.179368 TGTTCAAGAACTCCAAAAGCTATCG 59.821 40.000 13.49 0.00 41.67 2.92
829 945 6.560253 TGTTCAAGAACTCCAAAAGCTATC 57.440 37.500 13.49 0.00 41.67 2.08
830 946 6.959639 TTGTTCAAGAACTCCAAAAGCTAT 57.040 33.333 13.49 0.00 41.67 2.97
831 947 6.959639 ATTGTTCAAGAACTCCAAAAGCTA 57.040 33.333 13.49 0.00 41.67 3.32
832 948 5.859205 ATTGTTCAAGAACTCCAAAAGCT 57.141 34.783 13.49 0.00 41.67 3.74
833 949 8.593492 AATAATTGTTCAAGAACTCCAAAAGC 57.407 30.769 13.49 0.00 41.67 3.51
834 950 9.971922 AGAATAATTGTTCAAGAACTCCAAAAG 57.028 29.630 16.15 0.00 41.67 2.27
837 953 9.567776 TGTAGAATAATTGTTCAAGAACTCCAA 57.432 29.630 16.15 1.39 41.67 3.53
838 954 9.739276 ATGTAGAATAATTGTTCAAGAACTCCA 57.261 29.630 16.15 2.76 41.67 3.86
839 955 9.994432 CATGTAGAATAATTGTTCAAGAACTCC 57.006 33.333 16.15 0.00 41.67 3.85
840 956 9.495754 GCATGTAGAATAATTGTTCAAGAACTC 57.504 33.333 16.15 2.73 41.67 3.01
860 976 3.334691 GGTGAGTACAGCTTTGCATGTA 58.665 45.455 0.00 0.00 40.78 2.29
881 997 1.196354 CTGAACTCCAAAAGCTCTGCG 59.804 52.381 0.00 0.00 0.00 5.18
889 1005 5.534654 CAGAAATACACCCTGAACTCCAAAA 59.465 40.000 0.00 0.00 0.00 2.44
927 7110 3.844577 AAGCTCAACTCAATCACATGC 57.155 42.857 0.00 0.00 0.00 4.06
931 7114 4.212214 AGACGAAAAGCTCAACTCAATCAC 59.788 41.667 0.00 0.00 0.00 3.06
975 7158 2.288666 CGCCCTTTCTTTGCTGCTATA 58.711 47.619 0.00 0.00 0.00 1.31
996 7179 6.927936 CACTGACTACCTTCTCAATCATATGG 59.072 42.308 2.13 0.00 0.00 2.74
1111 7294 1.528161 GCTTCAACACAAATGGCTTGC 59.472 47.619 0.00 0.00 38.75 4.01
1124 7307 6.145535 CAGACTGAATGTTTAAGGCTTCAAC 58.854 40.000 15.63 15.63 0.00 3.18
1135 7318 8.641498 ATTTATCTGAACCAGACTGAATGTTT 57.359 30.769 3.32 0.00 43.63 2.83
1141 7324 9.010029 GGTTTTTATTTATCTGAACCAGACTGA 57.990 33.333 3.32 0.00 43.63 3.41
1174 7357 8.786826 TTATGAGGAAACAACAATCGAAGTAT 57.213 30.769 0.00 0.00 0.00 2.12
1212 7395 4.437239 TGTGGCACAAAACGAAATTCATT 58.563 34.783 19.74 0.00 44.16 2.57
1213 7396 4.052159 TGTGGCACAAAACGAAATTCAT 57.948 36.364 19.74 0.00 44.16 2.57
1260 7445 3.427638 CGTCATCTTCACTATGTCGGTGT 60.428 47.826 0.00 0.00 33.96 4.16
1264 7449 4.663166 AGTTCGTCATCTTCACTATGTCG 58.337 43.478 0.00 0.00 37.27 4.35
1296 7481 5.009631 TCAAAAGAACCACATAGGACATGG 58.990 41.667 0.00 0.00 41.22 3.66
1890 8077 1.071471 CGGAGATGGAATTCCCGGG 59.929 63.158 21.90 16.85 37.74 5.73
2425 8612 8.541133 AATCTTCTTGCAGTTACTTAGTTCTC 57.459 34.615 0.00 0.00 0.00 2.87
2548 8735 6.150641 CCAATCTGGAATATTGCCTGATAGTG 59.849 42.308 18.05 15.04 40.96 2.74
2714 9297 0.610232 GCAGGGAGTTGCCTTGACAT 60.610 55.000 0.00 0.00 46.23 3.06
4133 10723 5.449553 AGTGAAAGGATACAAATGATCCCC 58.550 41.667 0.00 0.00 43.52 4.81
4276 10866 2.956132 TCCTTCCTAGGAGCTCATCAG 58.044 52.381 17.19 8.67 45.82 2.90
5075 11674 1.074405 AGGCAAGGATCAAACAGCTCA 59.926 47.619 0.00 0.00 0.00 4.26
5305 11915 8.377799 TCAGCCTACATTATTACATCACATCAT 58.622 33.333 0.00 0.00 0.00 2.45
5340 11953 3.006537 TGTCCCAACTACAGCTACAAGTC 59.993 47.826 0.00 0.00 0.00 3.01
5396 12050 2.277969 CTACAGCCTGAACATGAGCAG 58.722 52.381 0.00 6.15 0.00 4.24
5425 12079 9.869844 GTACATGAATTAAGATACAACAGCATC 57.130 33.333 0.00 0.00 0.00 3.91
5554 12211 7.284489 ACAAAAACATGAGCTTAGAACTACCAA 59.716 33.333 0.00 0.00 0.00 3.67
5598 12257 2.712087 ACGGGAGAGGATAAGAGCTCTA 59.288 50.000 18.59 6.01 0.00 2.43
5610 12269 2.806237 GGCGAGTAACGGGAGAGG 59.194 66.667 0.00 0.00 42.83 3.69
5663 12322 7.349711 TGCACTACGATACAGAAAAGAAAAAC 58.650 34.615 0.00 0.00 0.00 2.43
5667 12326 6.394809 TGATGCACTACGATACAGAAAAGAA 58.605 36.000 0.00 0.00 0.00 2.52
5668 12327 5.961272 TGATGCACTACGATACAGAAAAGA 58.039 37.500 0.00 0.00 0.00 2.52
5669 12328 6.834959 ATGATGCACTACGATACAGAAAAG 57.165 37.500 0.00 0.00 0.00 2.27
5722 12406 4.080695 TGAAGAGCAAGAGCATATTCTGGT 60.081 41.667 0.00 0.00 45.49 4.00
5738 12422 3.254892 CCCGAAAGTAAGAGTGAAGAGC 58.745 50.000 0.00 0.00 0.00 4.09
5739 12423 3.254892 GCCCGAAAGTAAGAGTGAAGAG 58.745 50.000 0.00 0.00 0.00 2.85
5740 12424 2.028385 GGCCCGAAAGTAAGAGTGAAGA 60.028 50.000 0.00 0.00 0.00 2.87
5741 12425 2.289444 TGGCCCGAAAGTAAGAGTGAAG 60.289 50.000 0.00 0.00 0.00 3.02
5742 12426 1.695242 TGGCCCGAAAGTAAGAGTGAA 59.305 47.619 0.00 0.00 0.00 3.18
5743 12427 1.344065 TGGCCCGAAAGTAAGAGTGA 58.656 50.000 0.00 0.00 0.00 3.41
5751 12443 2.124411 AGTATGGTATGGCCCGAAAGT 58.876 47.619 0.00 0.00 36.04 2.66
5783 12487 1.674441 CAGCTGGTCTGGCAATACATG 59.326 52.381 5.57 0.00 39.15 3.21
5796 12500 1.202855 AGTGCTCAACATTCAGCTGGT 60.203 47.619 15.13 0.27 36.53 4.00
5807 12511 9.250624 CTAATATAAGTGGTAAGAGTGCTCAAC 57.749 37.037 1.82 0.00 0.00 3.18
5818 12522 9.595823 GCTGTCTGAAACTAATATAAGTGGTAA 57.404 33.333 0.00 0.00 0.00 2.85
5819 12523 8.755028 TGCTGTCTGAAACTAATATAAGTGGTA 58.245 33.333 0.00 0.00 0.00 3.25
5820 12524 7.620880 TGCTGTCTGAAACTAATATAAGTGGT 58.379 34.615 0.00 0.00 0.00 4.16
5821 12525 8.492673 TTGCTGTCTGAAACTAATATAAGTGG 57.507 34.615 0.00 0.00 0.00 4.00
5822 12526 9.371136 TCTTGCTGTCTGAAACTAATATAAGTG 57.629 33.333 0.00 0.00 0.00 3.16
5823 12527 9.593134 CTCTTGCTGTCTGAAACTAATATAAGT 57.407 33.333 0.00 0.00 0.00 2.24
5824 12528 9.039870 CCTCTTGCTGTCTGAAACTAATATAAG 57.960 37.037 0.00 0.00 0.00 1.73
5825 12529 8.540388 ACCTCTTGCTGTCTGAAACTAATATAA 58.460 33.333 0.00 0.00 0.00 0.98
5826 12530 8.079211 ACCTCTTGCTGTCTGAAACTAATATA 57.921 34.615 0.00 0.00 0.00 0.86
5827 12531 6.951971 ACCTCTTGCTGTCTGAAACTAATAT 58.048 36.000 0.00 0.00 0.00 1.28
5828 12532 6.360370 ACCTCTTGCTGTCTGAAACTAATA 57.640 37.500 0.00 0.00 0.00 0.98
5829 12533 5.234466 ACCTCTTGCTGTCTGAAACTAAT 57.766 39.130 0.00 0.00 0.00 1.73
5830 12534 4.689612 ACCTCTTGCTGTCTGAAACTAA 57.310 40.909 0.00 0.00 0.00 2.24
5831 12535 4.100963 TGAACCTCTTGCTGTCTGAAACTA 59.899 41.667 0.00 0.00 0.00 2.24
5832 12536 3.118261 TGAACCTCTTGCTGTCTGAAACT 60.118 43.478 0.00 0.00 0.00 2.66
5834 12538 3.558931 TGAACCTCTTGCTGTCTGAAA 57.441 42.857 0.00 0.00 0.00 2.69
5835 12539 3.777106 ATGAACCTCTTGCTGTCTGAA 57.223 42.857 0.00 0.00 0.00 3.02
5836 12540 3.834813 AGTATGAACCTCTTGCTGTCTGA 59.165 43.478 0.00 0.00 0.00 3.27
5909 12647 5.467738 TGGTAGACCATATGAGAGGTTCAT 58.532 41.667 3.65 0.00 44.25 2.57
5910 12648 4.878968 TGGTAGACCATATGAGAGGTTCA 58.121 43.478 3.65 0.00 42.01 3.18
5923 12661 4.055710 TCCTGATGTAAGTGGTAGACCA 57.944 45.455 0.00 0.00 45.30 4.02
5924 12662 4.222145 TGTTCCTGATGTAAGTGGTAGACC 59.778 45.833 0.00 0.00 0.00 3.85
5925 12663 5.169295 GTGTTCCTGATGTAAGTGGTAGAC 58.831 45.833 0.00 0.00 0.00 2.59
5926 12664 4.222145 GGTGTTCCTGATGTAAGTGGTAGA 59.778 45.833 0.00 0.00 0.00 2.59
5927 12665 4.020573 TGGTGTTCCTGATGTAAGTGGTAG 60.021 45.833 0.00 0.00 34.23 3.18
5928 12666 3.904965 TGGTGTTCCTGATGTAAGTGGTA 59.095 43.478 0.00 0.00 34.23 3.25
5929 12667 2.708861 TGGTGTTCCTGATGTAAGTGGT 59.291 45.455 0.00 0.00 34.23 4.16
5930 12668 3.417069 TGGTGTTCCTGATGTAAGTGG 57.583 47.619 0.00 0.00 34.23 4.00
5931 12669 5.528690 CCATATGGTGTTCCTGATGTAAGTG 59.471 44.000 14.09 0.00 34.23 3.16
5932 12670 5.684704 CCATATGGTGTTCCTGATGTAAGT 58.315 41.667 14.09 0.00 34.23 2.24
5944 12682 8.744296 AGAGGAAATCTGGTACCATATGGTGTT 61.744 40.741 33.41 16.51 42.52 3.32
5945 12683 7.328050 AGAGGAAATCTGGTACCATATGGTGT 61.328 42.308 33.41 13.48 42.52 4.16
5946 12684 5.072329 AGAGGAAATCTGGTACCATATGGTG 59.928 44.000 33.41 18.79 42.52 4.17
5947 12685 5.227593 AGAGGAAATCTGGTACCATATGGT 58.772 41.667 29.68 29.68 44.01 3.55
5948 12686 5.832539 AGAGGAAATCTGGTACCATATGG 57.167 43.478 20.68 20.68 36.69 2.74
5949 12687 9.799106 AAAATAGAGGAAATCTGGTACCATATG 57.201 33.333 16.75 3.90 39.20 1.78
5981 12719 2.585247 CCGGGCGCTAGTGTAAGC 60.585 66.667 7.64 0.00 39.21 3.09
5982 12720 2.585247 GCCGGGCGCTAGTGTAAG 60.585 66.667 7.64 0.00 0.00 2.34
5993 12731 3.435186 GTTTGAGCTGAGCCGGGC 61.435 66.667 12.11 12.11 0.00 6.13
5994 12732 1.172180 TTTGTTTGAGCTGAGCCGGG 61.172 55.000 2.18 0.00 0.00 5.73
5995 12733 0.040067 GTTTGTTTGAGCTGAGCCGG 60.040 55.000 0.00 0.00 0.00 6.13
5996 12734 0.947244 AGTTTGTTTGAGCTGAGCCG 59.053 50.000 0.00 0.00 0.00 5.52
5997 12735 1.949525 TGAGTTTGTTTGAGCTGAGCC 59.050 47.619 0.00 0.00 0.00 4.70
5998 12736 3.562505 CATGAGTTTGTTTGAGCTGAGC 58.437 45.455 0.00 0.00 0.00 4.26
5999 12737 3.562505 GCATGAGTTTGTTTGAGCTGAG 58.437 45.455 0.00 0.00 0.00 3.35
6000 12738 2.031769 CGCATGAGTTTGTTTGAGCTGA 60.032 45.455 0.00 0.00 0.00 4.26
6001 12739 2.031769 TCGCATGAGTTTGTTTGAGCTG 60.032 45.455 0.00 0.00 0.00 4.24
6002 12740 2.221169 TCGCATGAGTTTGTTTGAGCT 58.779 42.857 0.00 0.00 0.00 4.09
6003 12741 2.224079 TCTCGCATGAGTTTGTTTGAGC 59.776 45.455 0.00 0.00 43.09 4.26
6004 12742 4.472691 TTCTCGCATGAGTTTGTTTGAG 57.527 40.909 0.00 0.00 43.09 3.02
6005 12743 4.891627 TTTCTCGCATGAGTTTGTTTGA 57.108 36.364 0.00 0.00 43.09 2.69
6006 12744 5.947503 TTTTTCTCGCATGAGTTTGTTTG 57.052 34.783 0.00 0.00 43.09 2.93
6026 12764 1.886886 TCGGGCGCTTAGTTCTTTTT 58.113 45.000 7.64 0.00 0.00 1.94
6027 12765 1.737793 CATCGGGCGCTTAGTTCTTTT 59.262 47.619 7.64 0.00 0.00 2.27
6028 12766 1.066430 TCATCGGGCGCTTAGTTCTTT 60.066 47.619 7.64 0.00 0.00 2.52
6029 12767 0.535335 TCATCGGGCGCTTAGTTCTT 59.465 50.000 7.64 0.00 0.00 2.52
6030 12768 0.179108 GTCATCGGGCGCTTAGTTCT 60.179 55.000 7.64 0.00 0.00 3.01
6031 12769 0.459585 TGTCATCGGGCGCTTAGTTC 60.460 55.000 7.64 0.00 0.00 3.01
6032 12770 0.739813 GTGTCATCGGGCGCTTAGTT 60.740 55.000 7.64 0.00 0.00 2.24
6033 12771 1.153628 GTGTCATCGGGCGCTTAGT 60.154 57.895 7.64 0.00 0.00 2.24
6034 12772 0.739462 TTGTGTCATCGGGCGCTTAG 60.739 55.000 7.64 0.00 0.00 2.18
6035 12773 0.739462 CTTGTGTCATCGGGCGCTTA 60.739 55.000 7.64 0.00 0.00 3.09
6036 12774 2.031919 TTGTGTCATCGGGCGCTT 59.968 55.556 7.64 0.00 0.00 4.68
6037 12775 2.434884 CTTGTGTCATCGGGCGCT 60.435 61.111 7.64 0.00 0.00 5.92
6038 12776 4.166011 GCTTGTGTCATCGGGCGC 62.166 66.667 0.00 0.00 0.00 6.53
6039 12777 3.853330 CGCTTGTGTCATCGGGCG 61.853 66.667 0.00 0.00 36.89 6.13
6040 12778 3.499737 CCGCTTGTGTCATCGGGC 61.500 66.667 0.00 0.00 38.35 6.13
6041 12779 3.499737 GCCGCTTGTGTCATCGGG 61.500 66.667 0.00 0.00 41.96 5.14
6042 12780 3.853330 CGCCGCTTGTGTCATCGG 61.853 66.667 0.00 0.00 44.29 4.18
6043 12781 3.112075 ACGCCGCTTGTGTCATCG 61.112 61.111 0.00 0.00 29.74 3.84
6058 12796 0.093026 GATTTCCACTTGCGTCGACG 59.907 55.000 32.57 32.57 43.27 5.12
6059 12797 0.442699 GGATTTCCACTTGCGTCGAC 59.557 55.000 5.18 5.18 35.64 4.20
6060 12798 0.672401 GGGATTTCCACTTGCGTCGA 60.672 55.000 0.00 0.00 37.91 4.20
6061 12799 0.953471 TGGGATTTCCACTTGCGTCG 60.953 55.000 0.00 0.00 41.46 5.12
6062 12800 0.804989 CTGGGATTTCCACTTGCGTC 59.195 55.000 0.00 0.00 41.46 5.19
6063 12801 0.609131 CCTGGGATTTCCACTTGCGT 60.609 55.000 0.00 0.00 41.46 5.24
6064 12802 0.322456 TCCTGGGATTTCCACTTGCG 60.322 55.000 0.00 0.00 41.46 4.85
6065 12803 2.027385 GATCCTGGGATTTCCACTTGC 58.973 52.381 3.45 0.00 41.46 4.01
6066 12804 2.292267 CGATCCTGGGATTTCCACTTG 58.708 52.381 3.45 0.00 41.46 3.16
6067 12805 1.212935 CCGATCCTGGGATTTCCACTT 59.787 52.381 3.45 0.00 41.46 3.16
6068 12806 0.839946 CCGATCCTGGGATTTCCACT 59.160 55.000 3.45 0.00 41.46 4.00
6069 12807 0.819666 GCCGATCCTGGGATTTCCAC 60.820 60.000 3.45 0.00 41.46 4.02
6070 12808 1.531748 GCCGATCCTGGGATTTCCA 59.468 57.895 3.45 0.00 44.79 3.53
6071 12809 1.228276 GGCCGATCCTGGGATTTCC 60.228 63.158 3.45 2.57 34.60 3.13
6072 12810 0.536006 CTGGCCGATCCTGGGATTTC 60.536 60.000 0.00 0.00 34.60 2.17
6073 12811 1.533711 CTGGCCGATCCTGGGATTT 59.466 57.895 0.00 0.00 34.60 2.17
6074 12812 2.455565 CCTGGCCGATCCTGGGATT 61.456 63.158 0.00 0.00 46.89 3.01
6075 12813 2.851102 CCTGGCCGATCCTGGGAT 60.851 66.667 1.24 1.24 46.89 3.85
6079 12817 1.301244 CGATTCCTGGCCGATCCTG 60.301 63.158 0.00 0.00 35.26 3.86
6080 12818 0.833834 ATCGATTCCTGGCCGATCCT 60.834 55.000 0.00 0.00 38.48 3.24
6081 12819 1.674057 ATCGATTCCTGGCCGATCC 59.326 57.895 0.00 0.00 38.48 3.36
6083 12821 1.179174 TCGATCGATTCCTGGCCGAT 61.179 55.000 15.15 14.85 44.49 4.18
6084 12822 1.796190 CTCGATCGATTCCTGGCCGA 61.796 60.000 19.78 0.83 36.72 5.54
6085 12823 1.372251 CTCGATCGATTCCTGGCCG 60.372 63.158 19.78 0.00 0.00 6.13
6086 12824 0.319125 GTCTCGATCGATTCCTGGCC 60.319 60.000 19.78 0.00 0.00 5.36
6087 12825 0.661780 CGTCTCGATCGATTCCTGGC 60.662 60.000 19.78 7.07 0.00 4.85
6088 12826 0.039978 CCGTCTCGATCGATTCCTGG 60.040 60.000 19.78 12.28 0.00 4.45
6089 12827 0.661780 GCCGTCTCGATCGATTCCTG 60.662 60.000 19.78 6.62 0.00 3.86
6090 12828 1.655329 GCCGTCTCGATCGATTCCT 59.345 57.895 19.78 0.00 0.00 3.36
6091 12829 1.371881 GGCCGTCTCGATCGATTCC 60.372 63.158 19.78 11.25 0.00 3.01
6092 12830 0.661780 CTGGCCGTCTCGATCGATTC 60.662 60.000 19.78 13.23 0.00 2.52
6093 12831 1.360551 CTGGCCGTCTCGATCGATT 59.639 57.895 19.78 0.00 0.00 3.34
6094 12832 2.556459 CCTGGCCGTCTCGATCGAT 61.556 63.158 19.78 0.00 0.00 3.59
6095 12833 3.209812 CCTGGCCGTCTCGATCGA 61.210 66.667 18.32 18.32 0.00 3.59
6096 12834 3.209812 TCCTGGCCGTCTCGATCG 61.210 66.667 9.36 9.36 0.00 3.69
6097 12835 2.122167 AGTCCTGGCCGTCTCGATC 61.122 63.158 0.00 0.00 0.00 3.69
6098 12836 2.043852 AGTCCTGGCCGTCTCGAT 60.044 61.111 0.00 0.00 0.00 3.59
6099 12837 3.062466 CAGTCCTGGCCGTCTCGA 61.062 66.667 0.00 0.00 0.00 4.04
6100 12838 4.135153 CCAGTCCTGGCCGTCTCG 62.135 72.222 0.00 0.00 44.73 4.04
6109 12847 1.617947 GCACTAGGGTCCCAGTCCTG 61.618 65.000 11.55 1.99 34.75 3.86
6110 12848 1.306226 GCACTAGGGTCCCAGTCCT 60.306 63.158 11.55 0.00 37.18 3.85
6111 12849 1.306226 AGCACTAGGGTCCCAGTCC 60.306 63.158 11.55 1.97 0.00 3.85
6112 12850 0.614979 TGAGCACTAGGGTCCCAGTC 60.615 60.000 11.55 6.33 43.44 3.51
6113 12851 0.043334 ATGAGCACTAGGGTCCCAGT 59.957 55.000 11.55 8.87 43.44 4.00
6114 12852 0.755686 GATGAGCACTAGGGTCCCAG 59.244 60.000 11.55 8.20 43.44 4.45
6115 12853 0.691078 GGATGAGCACTAGGGTCCCA 60.691 60.000 11.55 0.00 43.44 4.37
6116 12854 0.399233 AGGATGAGCACTAGGGTCCC 60.399 60.000 0.00 0.00 43.44 4.46
6117 12855 2.383442 TAGGATGAGCACTAGGGTCC 57.617 55.000 0.00 0.00 43.44 4.46
6118 12856 3.567397 TCTTAGGATGAGCACTAGGGTC 58.433 50.000 0.00 0.00 44.35 4.46
6119 12857 3.571590 CTCTTAGGATGAGCACTAGGGT 58.428 50.000 0.00 0.00 0.00 4.34
6128 12866 0.749649 ACGCAGGCTCTTAGGATGAG 59.250 55.000 0.00 0.00 34.87 2.90
6129 12867 1.195115 AACGCAGGCTCTTAGGATGA 58.805 50.000 0.00 0.00 0.00 2.92
6130 12868 2.890808 TAACGCAGGCTCTTAGGATG 57.109 50.000 0.00 0.00 0.00 3.51
6131 12869 4.408276 TCTATAACGCAGGCTCTTAGGAT 58.592 43.478 0.00 0.00 0.00 3.24
6132 12870 3.828921 TCTATAACGCAGGCTCTTAGGA 58.171 45.455 0.00 0.00 0.00 2.94
6133 12871 4.489810 CATCTATAACGCAGGCTCTTAGG 58.510 47.826 0.00 0.00 0.00 2.69
6134 12872 3.923461 GCATCTATAACGCAGGCTCTTAG 59.077 47.826 0.00 0.00 0.00 2.18
6135 12873 3.306088 GGCATCTATAACGCAGGCTCTTA 60.306 47.826 0.00 0.00 0.00 2.10
6136 12874 2.548920 GGCATCTATAACGCAGGCTCTT 60.549 50.000 0.00 0.00 0.00 2.85
6137 12875 1.001406 GGCATCTATAACGCAGGCTCT 59.999 52.381 0.00 0.00 0.00 4.09
6138 12876 1.433534 GGCATCTATAACGCAGGCTC 58.566 55.000 0.00 0.00 0.00 4.70
6139 12877 0.035458 GGGCATCTATAACGCAGGCT 59.965 55.000 0.00 0.00 0.00 4.58
6140 12878 0.035458 AGGGCATCTATAACGCAGGC 59.965 55.000 0.00 0.00 0.00 4.85
6141 12879 2.550830 AAGGGCATCTATAACGCAGG 57.449 50.000 0.00 0.00 0.00 4.85
6142 12880 3.258372 TCCTAAGGGCATCTATAACGCAG 59.742 47.826 0.00 0.00 0.00 5.18
6143 12881 3.236047 TCCTAAGGGCATCTATAACGCA 58.764 45.455 0.00 0.00 0.00 5.24
6144 12882 3.368531 CCTCCTAAGGGCATCTATAACGC 60.369 52.174 0.00 0.00 39.21 4.84
6145 12883 4.087182 TCCTCCTAAGGGCATCTATAACG 58.913 47.826 0.00 0.00 43.56 3.18
6146 12884 5.780793 TCTTCCTCCTAAGGGCATCTATAAC 59.219 44.000 0.00 0.00 43.56 1.89
6147 12885 5.977533 TCTTCCTCCTAAGGGCATCTATAA 58.022 41.667 0.00 0.00 43.56 0.98
6148 12886 5.616975 TCTTCCTCCTAAGGGCATCTATA 57.383 43.478 0.00 0.00 43.56 1.31
6149 12887 4.493819 TCTTCCTCCTAAGGGCATCTAT 57.506 45.455 0.00 0.00 43.56 1.98
6150 12888 3.993658 TCTTCCTCCTAAGGGCATCTA 57.006 47.619 0.00 0.00 43.56 1.98
6151 12889 2.877154 TCTTCCTCCTAAGGGCATCT 57.123 50.000 0.00 0.00 43.56 2.90
6152 12890 3.749226 CAATCTTCCTCCTAAGGGCATC 58.251 50.000 0.00 0.00 43.56 3.91
6153 12891 2.158549 GCAATCTTCCTCCTAAGGGCAT 60.159 50.000 0.00 0.00 43.56 4.40
6154 12892 1.212935 GCAATCTTCCTCCTAAGGGCA 59.787 52.381 0.00 0.00 43.56 5.36
6155 12893 1.212935 TGCAATCTTCCTCCTAAGGGC 59.787 52.381 0.00 0.00 43.56 5.19
6156 12894 2.747799 GCTGCAATCTTCCTCCTAAGGG 60.748 54.545 0.00 0.00 43.56 3.95
6157 12895 2.172293 AGCTGCAATCTTCCTCCTAAGG 59.828 50.000 1.02 0.00 44.89 2.69
6158 12896 3.204526 CAGCTGCAATCTTCCTCCTAAG 58.795 50.000 0.00 0.00 0.00 2.18
6159 12897 2.573462 ACAGCTGCAATCTTCCTCCTAA 59.427 45.455 15.27 0.00 0.00 2.69
6160 12898 2.093288 CACAGCTGCAATCTTCCTCCTA 60.093 50.000 15.27 0.00 0.00 2.94
6161 12899 0.990374 ACAGCTGCAATCTTCCTCCT 59.010 50.000 15.27 0.00 0.00 3.69
6162 12900 1.093159 CACAGCTGCAATCTTCCTCC 58.907 55.000 15.27 0.00 0.00 4.30
6163 12901 0.450983 GCACAGCTGCAATCTTCCTC 59.549 55.000 15.27 0.00 43.62 3.71
6164 12902 0.964358 GGCACAGCTGCAATCTTCCT 60.964 55.000 15.27 0.00 46.28 3.36
6165 12903 1.246056 TGGCACAGCTGCAATCTTCC 61.246 55.000 15.27 5.15 46.28 3.46
6166 12904 0.599558 TTGGCACAGCTGCAATCTTC 59.400 50.000 15.27 0.00 46.28 2.87
6167 12905 0.316204 GTTGGCACAGCTGCAATCTT 59.684 50.000 15.27 0.00 46.28 2.40
6168 12906 1.530013 GGTTGGCACAGCTGCAATCT 61.530 55.000 15.27 0.00 46.28 2.40
6169 12907 1.080298 GGTTGGCACAGCTGCAATC 60.080 57.895 15.27 6.85 46.28 2.67
6170 12908 1.401318 TTGGTTGGCACAGCTGCAAT 61.401 50.000 15.27 0.00 46.28 3.56
6171 12909 2.056815 TTGGTTGGCACAGCTGCAA 61.057 52.632 15.27 7.43 46.28 4.08
6172 12910 2.441717 TTGGTTGGCACAGCTGCA 60.442 55.556 15.27 0.06 46.28 4.41
6173 12911 2.028043 GTTGGTTGGCACAGCTGC 59.972 61.111 15.27 0.33 42.39 5.25
6174 12912 2.730094 GGTTGGTTGGCACAGCTG 59.270 61.111 13.48 13.48 42.39 4.24
6175 12913 2.521708 GGGTTGGTTGGCACAGCT 60.522 61.111 0.00 0.00 42.39 4.24
6176 12914 1.685355 AAAGGGTTGGTTGGCACAGC 61.685 55.000 0.00 0.00 42.39 4.40
6177 12915 0.104671 CAAAGGGTTGGTTGGCACAG 59.895 55.000 0.00 0.00 42.39 3.66
6178 12916 0.324738 TCAAAGGGTTGGTTGGCACA 60.325 50.000 0.00 0.00 35.29 4.57
6179 12917 0.827368 TTCAAAGGGTTGGTTGGCAC 59.173 50.000 0.00 0.00 35.29 5.01
6180 12918 1.573108 TTTCAAAGGGTTGGTTGGCA 58.427 45.000 0.00 0.00 35.29 4.92
6181 12919 2.700722 TTTTCAAAGGGTTGGTTGGC 57.299 45.000 0.00 0.00 35.29 4.52
6182 12920 4.775236 TGATTTTTCAAAGGGTTGGTTGG 58.225 39.130 0.00 0.00 35.29 3.77
6183 12921 5.821995 ACATGATTTTTCAAAGGGTTGGTTG 59.178 36.000 0.00 0.00 35.29 3.77
6184 12922 5.821995 CACATGATTTTTCAAAGGGTTGGTT 59.178 36.000 0.00 0.00 35.29 3.67
6185 12923 5.367302 CACATGATTTTTCAAAGGGTTGGT 58.633 37.500 0.00 0.00 35.29 3.67
6186 12924 4.213906 GCACATGATTTTTCAAAGGGTTGG 59.786 41.667 0.00 0.00 35.29 3.77
6187 12925 5.058490 AGCACATGATTTTTCAAAGGGTTG 58.942 37.500 0.00 0.00 35.95 3.77
6188 12926 5.294734 AGCACATGATTTTTCAAAGGGTT 57.705 34.783 0.00 0.00 0.00 4.11
6189 12927 4.961438 AGCACATGATTTTTCAAAGGGT 57.039 36.364 0.00 0.00 0.00 4.34
6190 12928 5.528320 ACAAAGCACATGATTTTTCAAAGGG 59.472 36.000 0.00 0.00 30.39 3.95
6191 12929 6.607735 ACAAAGCACATGATTTTTCAAAGG 57.392 33.333 0.00 0.00 30.39 3.11
6192 12930 7.742963 GCATACAAAGCACATGATTTTTCAAAG 59.257 33.333 0.00 0.00 30.39 2.77
6193 12931 7.226128 TGCATACAAAGCACATGATTTTTCAAA 59.774 29.630 0.00 0.00 37.02 2.69
6194 12932 6.704937 TGCATACAAAGCACATGATTTTTCAA 59.295 30.769 0.00 0.00 37.02 2.69
6195 12933 6.221659 TGCATACAAAGCACATGATTTTTCA 58.778 32.000 0.00 0.00 37.02 2.69
6196 12934 6.709145 TGCATACAAAGCACATGATTTTTC 57.291 33.333 0.00 0.00 37.02 2.29
6207 12945 2.483877 CGGAAGAAGTGCATACAAAGCA 59.516 45.455 0.00 0.00 40.19 3.91
6208 12946 2.484264 ACGGAAGAAGTGCATACAAAGC 59.516 45.455 0.00 0.00 0.00 3.51
6209 12947 4.378459 GGAACGGAAGAAGTGCATACAAAG 60.378 45.833 0.00 0.00 0.00 2.77
6210 12948 3.500680 GGAACGGAAGAAGTGCATACAAA 59.499 43.478 0.00 0.00 0.00 2.83
6211 12949 3.071479 GGAACGGAAGAAGTGCATACAA 58.929 45.455 0.00 0.00 0.00 2.41
6212 12950 2.695359 GGAACGGAAGAAGTGCATACA 58.305 47.619 0.00 0.00 0.00 2.29
6226 12964 7.327275 TGAAATATCAAAAACATTTCGGAACGG 59.673 33.333 0.00 0.00 42.76 4.44
6227 12965 8.221801 TGAAATATCAAAAACATTTCGGAACG 57.778 30.769 0.00 0.00 43.58 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.