Multiple sequence alignment - TraesCS3D01G310600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310600 chr3D 100.000 8403 0 0 1 8403 424886539 424894941 0.000000e+00 15518.0
1 TraesCS3D01G310600 chr3B 96.045 3489 81 20 3783 7219 554989193 554992676 0.000000e+00 5626.0
2 TraesCS3D01G310600 chr3B 93.967 3249 136 31 1 3234 554985619 554988822 0.000000e+00 4859.0
3 TraesCS3D01G310600 chr3B 91.379 696 41 7 7211 7899 554993655 554994338 0.000000e+00 935.0
4 TraesCS3D01G310600 chr3B 90.403 719 36 18 7688 8403 554994329 554995017 0.000000e+00 915.0
5 TraesCS3D01G310600 chr3B 98.131 214 4 0 3231 3444 554988981 554989194 2.860000e-99 374.0
6 TraesCS3D01G310600 chr3A 92.545 2723 93 29 4325 6983 563832654 563829978 0.000000e+00 3803.0
7 TraesCS3D01G310600 chr3A 92.451 2464 126 27 814 3234 563835973 563833527 0.000000e+00 3465.0
8 TraesCS3D01G310600 chr3A 92.582 1429 75 8 6982 8403 563829895 563828491 0.000000e+00 2023.0
9 TraesCS3D01G310600 chr3A 93.661 489 23 6 3783 4266 563833158 563832673 0.000000e+00 725.0
10 TraesCS3D01G310600 chr3A 94.393 214 11 1 3231 3444 563833369 563833157 2.260000e-85 327.0
11 TraesCS3D01G310600 chr3A 84.314 306 44 4 3443 3747 109433080 109432778 6.380000e-76 296.0
12 TraesCS3D01G310600 chr4D 81.664 709 122 6 7688 8395 508824705 508824004 4.370000e-162 582.0
13 TraesCS3D01G310600 chr4D 81.667 300 46 6 3443 3738 115478187 115478481 3.030000e-59 241.0
14 TraesCS3D01G310600 chr4D 81.126 302 46 9 3442 3738 438516219 438515924 1.820000e-56 231.0
15 TraesCS3D01G310600 chr4A 91.885 419 26 6 2649 3064 714405224 714404811 5.650000e-161 579.0
16 TraesCS3D01G310600 chr4A 92.537 67 4 1 2059 2125 714405362 714405297 2.500000e-15 95.3
17 TraesCS3D01G310600 chr7D 81.137 721 120 8 7688 8403 384041771 384041062 1.580000e-156 564.0
18 TraesCS3D01G310600 chr7D 82.394 426 29 15 2647 3064 568199652 568200039 6.290000e-86 329.0
19 TraesCS3D01G310600 chr7D 96.552 116 4 0 2056 2171 568199539 568199654 8.610000e-45 193.0
20 TraesCS3D01G310600 chr7B 90.544 423 31 6 2648 3064 10282350 10282769 1.230000e-152 551.0
21 TraesCS3D01G310600 chr7B 79.402 301 50 10 3443 3738 625627787 625628080 1.430000e-47 202.0
22 TraesCS3D01G310600 chr7B 93.333 105 6 1 2065 2168 10282244 10282348 4.060000e-33 154.0
23 TraesCS3D01G310600 chr2B 80.563 710 128 8 7687 8394 373359603 373360304 9.600000e-149 538.0
24 TraesCS3D01G310600 chr2B 84.768 302 40 6 3443 3742 369163333 369163036 1.770000e-76 298.0
25 TraesCS3D01G310600 chr2B 83.105 219 23 7 1017 1224 478101593 478101808 4.000000e-43 187.0
26 TraesCS3D01G310600 chr2B 90.526 95 9 0 5335 5429 466212987 466213081 8.850000e-25 126.0
27 TraesCS3D01G310600 chr6B 80.305 721 131 5 7687 8402 663539864 663539150 1.240000e-147 534.0
28 TraesCS3D01G310600 chr6B 82.060 301 43 9 3443 3738 549752576 549752870 6.510000e-61 246.0
29 TraesCS3D01G310600 chr6B 94.286 35 1 1 2493 2526 635169493 635169459 1.500000e-02 52.8
30 TraesCS3D01G310600 chr2D 80.478 712 126 8 7687 8395 587270324 587269623 4.470000e-147 532.0
31 TraesCS3D01G310600 chr2D 84.641 306 43 4 3443 3747 81727465 81727767 1.370000e-77 302.0
32 TraesCS3D01G310600 chr2D 93.878 98 6 0 5334 5431 642818488 642818585 1.890000e-31 148.0
33 TraesCS3D01G310600 chr5A 80.370 703 133 3 7693 8395 708607383 708606686 5.780000e-146 529.0
34 TraesCS3D01G310600 chr5A 84.790 309 38 9 3443 3747 323251895 323252198 1.370000e-77 302.0
35 TraesCS3D01G310600 chr5D 80.516 698 124 8 7687 8381 497818341 497817653 7.470000e-145 525.0
36 TraesCS3D01G310600 chr5D 93.939 99 3 2 5334 5431 558147159 558147063 6.800000e-31 147.0
37 TraesCS3D01G310600 chr1A 91.753 291 13 9 2647 2930 27397477 27397191 2.200000e-105 394.0
38 TraesCS3D01G310600 chr1A 95.575 113 4 1 2059 2171 27397586 27397475 6.700000e-41 180.0
39 TraesCS3D01G310600 chr6D 86.333 300 39 2 3443 3742 64889187 64889484 8.130000e-85 326.0
40 TraesCS3D01G310600 chr6D 88.889 63 4 3 1049 1108 277023446 277023384 3.250000e-09 75.0
41 TraesCS3D01G310600 chr4B 84.899 298 42 3 3443 3739 40203707 40203412 1.770000e-76 298.0
42 TraesCS3D01G310600 chr4B 82.081 346 49 10 3443 3784 166652482 166652818 4.970000e-72 283.0
43 TraesCS3D01G310600 chr4B 90.526 95 9 0 5335 5429 16044753 16044847 8.850000e-25 126.0
44 TraesCS3D01G310600 chr5B 81.977 344 50 10 3446 3784 232305618 232305282 1.790000e-71 281.0
45 TraesCS3D01G310600 chr7A 81.844 347 48 13 3443 3783 321066066 321066403 2.310000e-70 278.0
46 TraesCS3D01G310600 chr7A 91.919 99 5 1 5334 5429 696847287 696847189 1.470000e-27 135.0
47 TraesCS3D01G310600 chr2A 89.899 99 7 1 5334 5429 705937657 705937755 3.180000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310600 chr3D 424886539 424894941 8402 False 15518.00 15518 100.0000 1 8403 1 chr3D.!!$F1 8402
1 TraesCS3D01G310600 chr3B 554985619 554995017 9398 False 2541.80 5626 93.9850 1 8403 5 chr3B.!!$F1 8402
2 TraesCS3D01G310600 chr3A 563828491 563835973 7482 True 2068.60 3803 93.1264 814 8403 5 chr3A.!!$R2 7589
3 TraesCS3D01G310600 chr4D 508824004 508824705 701 True 582.00 582 81.6640 7688 8395 1 chr4D.!!$R2 707
4 TraesCS3D01G310600 chr4A 714404811 714405362 551 True 337.15 579 92.2110 2059 3064 2 chr4A.!!$R1 1005
5 TraesCS3D01G310600 chr7D 384041062 384041771 709 True 564.00 564 81.1370 7688 8403 1 chr7D.!!$R1 715
6 TraesCS3D01G310600 chr7D 568199539 568200039 500 False 261.00 329 89.4730 2056 3064 2 chr7D.!!$F1 1008
7 TraesCS3D01G310600 chr7B 10282244 10282769 525 False 352.50 551 91.9385 2065 3064 2 chr7B.!!$F2 999
8 TraesCS3D01G310600 chr2B 373359603 373360304 701 False 538.00 538 80.5630 7687 8394 1 chr2B.!!$F1 707
9 TraesCS3D01G310600 chr6B 663539150 663539864 714 True 534.00 534 80.3050 7687 8402 1 chr6B.!!$R2 715
10 TraesCS3D01G310600 chr2D 587269623 587270324 701 True 532.00 532 80.4780 7687 8395 1 chr2D.!!$R1 708
11 TraesCS3D01G310600 chr5A 708606686 708607383 697 True 529.00 529 80.3700 7693 8395 1 chr5A.!!$R1 702
12 TraesCS3D01G310600 chr5D 497817653 497818341 688 True 525.00 525 80.5160 7687 8381 1 chr5D.!!$R1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 541 0.030638 CACCTTTCCTTGCCACAACG 59.969 55.000 0.00 0.0 0.00 4.10 F
857 860 0.391927 CCGTTCCAAATACCGAGCCA 60.392 55.000 0.00 0.0 0.00 4.75 F
945 953 1.202769 TACCACCAAGCCCTACACCC 61.203 60.000 0.00 0.0 0.00 4.61 F
2661 2736 2.409975 CACGTAATGTGGACTTCCGTT 58.590 47.619 0.00 0.0 45.21 4.44 F
3072 3158 2.075426 GAAAGCGGCAGCCACAAACT 62.075 55.000 13.30 0.0 46.67 2.66 F
3538 3793 0.179000 AAATGGGAGTCTAGGCAGCG 59.821 55.000 0.00 0.0 0.00 5.18 F
3545 3800 0.250295 AGTCTAGGCAGCGCAAAACA 60.250 50.000 11.47 0.0 0.00 2.83 F
3774 4029 0.318445 CGCTTACGCCTACCGCTTAT 60.318 55.000 0.00 0.0 41.76 1.73 F
3781 4036 1.329599 CGCCTACCGCTTATTTCAACC 59.670 52.381 0.00 0.0 34.21 3.77 F
5446 5748 2.489329 ACAGGTCATTACAAGCACATGC 59.511 45.455 0.00 0.0 42.49 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2485 2558 3.477504 CGTAAGACGTTTCGGGTCA 57.522 52.632 0.00 0.00 43.02 4.02 R
2661 2736 8.899771 GGGTTTCTAAAGCAGCAAATAATACTA 58.100 33.333 6.93 0.00 38.11 1.82 R
3064 3150 7.377398 TCATATGATTGGTTTGAAGTTTGTGG 58.623 34.615 0.00 0.00 0.00 4.17 R
3473 3728 0.108329 TGCCTAGTTCCTAAGCGTGC 60.108 55.000 0.00 0.00 0.00 5.34 R
4748 5019 0.603975 ACGCTGAGGAAAACTGGCTC 60.604 55.000 0.00 0.00 0.00 4.70 R
5670 5972 0.755079 TCATTGATCTGGAGAGGGCG 59.245 55.000 0.00 0.00 0.00 6.13 R
5709 6016 5.235616 GCAATGCTATTACGCTACCACTAAA 59.764 40.000 0.00 0.00 0.00 1.85 R
5774 6082 2.813754 TGTCATTCTTTACCTGCAGTGC 59.186 45.455 13.81 8.58 0.00 4.40 R
5775 6083 5.437289 TTTGTCATTCTTTACCTGCAGTG 57.563 39.130 13.81 6.81 0.00 3.66 R
7459 8881 0.035439 GAGGGAAGGATGGAAACGCA 60.035 55.000 0.00 0.00 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.344679 TCTTACCCACACGAGAAGGTAAAA 59.655 41.667 15.09 4.66 42.66 1.52
61 62 2.919229 GTTCAACACGGTATAGTGGACG 59.081 50.000 2.14 0.00 45.80 4.79
87 89 4.114997 GGATTTGCACCCACGCCG 62.115 66.667 0.00 0.00 0.00 6.46
93 95 2.203015 GCACCCACGCCGATATGT 60.203 61.111 0.00 0.00 0.00 2.29
116 118 2.365582 GTCAACTTGACACAAGGTGGT 58.634 47.619 23.22 0.22 46.22 4.16
129 131 0.632835 AGGTGGTTGCATGGATCCAT 59.367 50.000 22.15 22.15 37.08 3.41
156 158 4.729868 AGGGTGCATTTATAACTCCATCC 58.270 43.478 0.00 0.00 0.00 3.51
157 159 3.826729 GGGTGCATTTATAACTCCATCCC 59.173 47.826 0.00 0.00 0.00 3.85
208 210 6.525578 AGAACAAACATATCGACCTCTACA 57.474 37.500 0.00 0.00 0.00 2.74
212 214 4.667519 AACATATCGACCTCTACAACCC 57.332 45.455 0.00 0.00 0.00 4.11
216 218 2.297698 TCGACCTCTACAACCCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
223 225 3.195825 CCTCTACAACCCTGAACGAGAAT 59.804 47.826 0.00 0.00 0.00 2.40
275 277 5.849858 TCGTGTTACATAACGAATTCAAGC 58.150 37.500 6.22 0.00 45.14 4.01
276 278 5.019498 CGTGTTACATAACGAATTCAAGCC 58.981 41.667 6.22 0.00 42.32 4.35
282 284 4.394920 ACATAACGAATTCAAGCCGAACAT 59.605 37.500 6.22 0.00 36.12 2.71
289 291 1.808411 TCAAGCCGAACATCTTCACC 58.192 50.000 0.00 0.00 0.00 4.02
302 304 6.017400 ACATCTTCACCTTATGCACTTTTG 57.983 37.500 0.00 0.00 0.00 2.44
303 305 5.536161 ACATCTTCACCTTATGCACTTTTGT 59.464 36.000 0.00 0.00 0.00 2.83
314 316 1.727857 GCACTTTTGTAACCGCCATCG 60.728 52.381 0.00 0.00 0.00 3.84
318 320 2.684001 TTTGTAACCGCCATCGATCT 57.316 45.000 0.00 0.00 38.10 2.75
342 344 6.446318 TCAAATTCTGCTTCATGGTGTTTAC 58.554 36.000 0.00 0.00 0.00 2.01
359 361 2.315503 TACCTCTCCCCTTCCTAGGA 57.684 55.000 7.62 7.62 45.05 2.94
380 382 4.872691 GGAAAACATCATCGATCTCACTGT 59.127 41.667 0.00 0.00 0.00 3.55
381 383 5.352569 GGAAAACATCATCGATCTCACTGTT 59.647 40.000 0.00 0.00 0.00 3.16
397 399 6.648310 TCTCACTGTTCTTCATGTTGAGATTC 59.352 38.462 0.00 0.00 0.00 2.52
402 404 7.664731 ACTGTTCTTCATGTTGAGATTCTTCAT 59.335 33.333 0.00 0.00 0.00 2.57
403 405 8.400184 TGTTCTTCATGTTGAGATTCTTCATT 57.600 30.769 0.00 0.00 0.00 2.57
445 447 3.660501 GGTTTCAACCCTTTGTCCATC 57.339 47.619 0.00 0.00 43.43 3.51
455 457 0.447406 TTTGTCCATCATTGCTCGCG 59.553 50.000 0.00 0.00 0.00 5.87
456 458 0.673333 TTGTCCATCATTGCTCGCGT 60.673 50.000 5.77 0.00 0.00 6.01
483 485 1.402968 CGAATTCTCCATGGTGCCTTG 59.597 52.381 12.58 0.00 0.00 3.61
525 527 3.373767 GCCCCAAACCCTATATCACCTTT 60.374 47.826 0.00 0.00 0.00 3.11
538 541 0.030638 CACCTTTCCTTGCCACAACG 59.969 55.000 0.00 0.00 0.00 4.10
565 568 2.068834 TGGATAGAGTCGTCCCCTTC 57.931 55.000 13.11 0.00 33.45 3.46
566 569 1.286849 TGGATAGAGTCGTCCCCTTCA 59.713 52.381 13.11 0.00 33.45 3.02
567 570 2.091278 TGGATAGAGTCGTCCCCTTCAT 60.091 50.000 13.11 0.00 33.45 2.57
568 571 2.559231 GGATAGAGTCGTCCCCTTCATC 59.441 54.545 6.39 0.00 0.00 2.92
569 572 2.820728 TAGAGTCGTCCCCTTCATCA 57.179 50.000 0.00 0.00 0.00 3.07
603 606 4.208686 GGTAGAGGAGGGCGTGCG 62.209 72.222 0.00 0.00 0.00 5.34
605 608 2.678934 TAGAGGAGGGCGTGCGTT 60.679 61.111 0.00 0.00 0.00 4.84
613 616 2.413837 GAGGGCGTGCGTTGATATAAT 58.586 47.619 0.00 0.00 0.00 1.28
615 618 3.991773 GAGGGCGTGCGTTGATATAATAA 59.008 43.478 0.00 0.00 0.00 1.40
616 619 3.994392 AGGGCGTGCGTTGATATAATAAG 59.006 43.478 0.00 0.00 0.00 1.73
617 620 3.991773 GGGCGTGCGTTGATATAATAAGA 59.008 43.478 0.00 0.00 0.00 2.10
618 621 4.143179 GGGCGTGCGTTGATATAATAAGAC 60.143 45.833 0.00 0.00 0.00 3.01
637 640 4.315803 AGACCCAATAAGAAATATCGCCG 58.684 43.478 0.00 0.00 0.00 6.46
640 643 4.261801 CCCAATAAGAAATATCGCCGGAT 58.738 43.478 5.05 0.00 36.65 4.18
644 647 6.594159 CCAATAAGAAATATCGCCGGATAAGT 59.406 38.462 5.05 0.00 38.58 2.24
651 654 2.083167 TCGCCGGATAAGTTTTTCGT 57.917 45.000 5.05 0.00 0.00 3.85
654 657 1.061566 GCCGGATAAGTTTTTCGTCGG 59.938 52.381 5.05 0.00 39.26 4.79
668 671 3.221964 TCGTCGGTAGAGCTTTAAACC 57.778 47.619 0.00 0.00 0.00 3.27
671 674 1.895131 TCGGTAGAGCTTTAAACCCGT 59.105 47.619 10.40 0.00 35.59 5.28
689 692 6.997239 ACCCGTTTCTTAGGTATTCATTTC 57.003 37.500 0.00 0.00 30.13 2.17
744 747 7.806690 ACTTTTTGAGCAAAGTTTCCTTTTTC 58.193 30.769 0.00 0.00 43.17 2.29
745 748 7.661437 ACTTTTTGAGCAAAGTTTCCTTTTTCT 59.339 29.630 0.00 0.00 43.17 2.52
746 749 7.977789 TTTTGAGCAAAGTTTCCTTTTTCTT 57.022 28.000 0.00 0.00 38.87 2.52
747 750 7.977789 TTTGAGCAAAGTTTCCTTTTTCTTT 57.022 28.000 0.00 0.00 38.87 2.52
748 751 7.595311 TTGAGCAAAGTTTCCTTTTTCTTTC 57.405 32.000 0.00 0.00 38.87 2.62
749 752 6.696411 TGAGCAAAGTTTCCTTTTTCTTTCA 58.304 32.000 0.00 0.00 38.87 2.69
750 753 6.813152 TGAGCAAAGTTTCCTTTTTCTTTCAG 59.187 34.615 0.00 0.00 38.87 3.02
751 754 6.108687 AGCAAAGTTTCCTTTTTCTTTCAGG 58.891 36.000 0.00 0.00 38.87 3.86
752 755 5.294306 GCAAAGTTTCCTTTTTCTTTCAGGG 59.706 40.000 0.00 0.00 38.87 4.45
753 756 6.639563 CAAAGTTTCCTTTTTCTTTCAGGGA 58.360 36.000 0.00 0.00 38.87 4.20
754 757 7.275183 CAAAGTTTCCTTTTTCTTTCAGGGAT 58.725 34.615 0.00 0.00 38.87 3.85
755 758 7.437713 AAGTTTCCTTTTTCTTTCAGGGATT 57.562 32.000 0.00 0.00 0.00 3.01
756 759 6.820335 AGTTTCCTTTTTCTTTCAGGGATTG 58.180 36.000 0.00 0.00 0.00 2.67
757 760 6.611236 AGTTTCCTTTTTCTTTCAGGGATTGA 59.389 34.615 0.00 0.00 0.00 2.57
758 761 6.655078 TTCCTTTTTCTTTCAGGGATTGAG 57.345 37.500 0.00 0.00 37.07 3.02
759 762 4.524328 TCCTTTTTCTTTCAGGGATTGAGC 59.476 41.667 0.00 0.00 37.07 4.26
760 763 4.281688 CCTTTTTCTTTCAGGGATTGAGCA 59.718 41.667 0.00 0.00 37.07 4.26
761 764 5.046807 CCTTTTTCTTTCAGGGATTGAGCAT 60.047 40.000 0.00 0.00 37.07 3.79
762 765 6.153340 CCTTTTTCTTTCAGGGATTGAGCATA 59.847 38.462 0.00 0.00 37.07 3.14
763 766 6.764308 TTTTCTTTCAGGGATTGAGCATAG 57.236 37.500 0.00 0.00 37.07 2.23
795 798 5.181748 ACAAGGCTTGAGCATAGTTTCTAG 58.818 41.667 32.50 1.34 44.36 2.43
796 799 5.181748 CAAGGCTTGAGCATAGTTTCTAGT 58.818 41.667 22.64 0.00 44.36 2.57
797 800 5.428184 AGGCTTGAGCATAGTTTCTAGTT 57.572 39.130 5.24 0.00 44.36 2.24
799 802 6.241645 AGGCTTGAGCATAGTTTCTAGTTTT 58.758 36.000 5.24 0.00 44.36 2.43
800 803 6.717084 AGGCTTGAGCATAGTTTCTAGTTTTT 59.283 34.615 5.24 0.00 44.36 1.94
850 853 8.200120 AGGTATACTCTTTACCGTTCCAAATAC 58.800 37.037 2.25 0.00 43.25 1.89
851 854 7.439356 GGTATACTCTTTACCGTTCCAAATACC 59.561 40.741 2.25 0.00 30.46 2.73
852 855 4.248058 ACTCTTTACCGTTCCAAATACCG 58.752 43.478 0.00 0.00 0.00 4.02
853 856 4.021192 ACTCTTTACCGTTCCAAATACCGA 60.021 41.667 0.00 0.00 0.00 4.69
854 857 4.497300 TCTTTACCGTTCCAAATACCGAG 58.503 43.478 0.00 0.00 0.00 4.63
857 860 0.391927 CCGTTCCAAATACCGAGCCA 60.392 55.000 0.00 0.00 0.00 4.75
945 953 1.202769 TACCACCAAGCCCTACACCC 61.203 60.000 0.00 0.00 0.00 4.61
974 982 4.778143 GTTCCCCAGCGGCGTCAT 62.778 66.667 9.37 0.00 0.00 3.06
1771 1811 4.119862 CACCTGGAATTCGATGAATACGT 58.880 43.478 0.00 0.00 31.46 3.57
1997 2038 4.962155 AGTACTCTTGTGCTGCTTACTTT 58.038 39.130 0.00 0.00 37.73 2.66
2162 2234 4.892934 AGGTCCTTTCATAGCAAAAACACA 59.107 37.500 0.00 0.00 0.00 3.72
2193 2265 6.436843 TTGACCACTGACTTTTCTTTCTTC 57.563 37.500 0.00 0.00 0.00 2.87
2197 2269 5.064834 ACCACTGACTTTTCTTTCTTCGTTC 59.935 40.000 0.00 0.00 0.00 3.95
2485 2558 7.871463 GTGTAAGATGTTTAAGGTCACTAGTGT 59.129 37.037 21.99 5.87 0.00 3.55
2486 2559 7.870954 TGTAAGATGTTTAAGGTCACTAGTGTG 59.129 37.037 21.99 0.00 45.07 3.82
2535 2608 6.176183 ACAGAGGGAGTATCTCAAAAACATG 58.824 40.000 0.00 0.00 38.91 3.21
2536 2609 5.065731 CAGAGGGAGTATCTCAAAAACATGC 59.934 44.000 0.00 0.00 38.91 4.06
2537 2610 4.922206 AGGGAGTATCTCAAAAACATGCA 58.078 39.130 0.00 0.00 38.91 3.96
2538 2611 4.946157 AGGGAGTATCTCAAAAACATGCAG 59.054 41.667 0.00 0.00 38.91 4.41
2539 2612 4.439289 GGGAGTATCTCAAAAACATGCAGC 60.439 45.833 0.00 0.00 33.91 5.25
2540 2613 4.156556 GGAGTATCTCAAAAACATGCAGCA 59.843 41.667 0.00 0.00 33.73 4.41
2591 2666 9.855021 AAATAATAATTACTGGCAACTTGTGAC 57.145 29.630 0.00 0.00 34.82 3.67
2592 2667 8.807948 ATAATAATTACTGGCAACTTGTGACT 57.192 30.769 0.00 0.00 35.56 3.41
2622 2697 9.725019 ATAAGTGAATTATAGATGCCGATTTGA 57.275 29.630 0.00 0.00 32.08 2.69
2661 2736 2.409975 CACGTAATGTGGACTTCCGTT 58.590 47.619 0.00 0.00 45.21 4.44
2958 3043 6.264292 AGCGACACTGTTCTCATATCTATTCT 59.736 38.462 0.00 0.00 0.00 2.40
3072 3158 2.075426 GAAAGCGGCAGCCACAAACT 62.075 55.000 13.30 0.00 46.67 2.66
3114 3200 4.776308 TCTGATGGAGGTATGAGATCATGG 59.224 45.833 5.58 0.00 37.15 3.66
3180 3266 8.213679 ACTATGTGATTTGGTCTGCTATTATGT 58.786 33.333 0.00 0.00 0.00 2.29
3190 3276 6.551227 TGGTCTGCTATTATGTGAGTAGTCAT 59.449 38.462 2.99 0.00 34.36 3.06
3207 3300 8.079211 AGTAGTCATTAGGCACTGAAAAGATA 57.921 34.615 0.00 0.00 41.52 1.98
3215 3308 6.690194 AGGCACTGAAAAGATATGATGTTC 57.310 37.500 0.00 0.00 37.18 3.18
3383 3638 4.134563 TCATTTATTTCCCTAAGCTCGGC 58.865 43.478 0.00 0.00 0.00 5.54
3399 3654 4.513318 AGCTCGGCTCTTCTATTTATTTGC 59.487 41.667 0.00 0.00 30.62 3.68
3455 3710 8.644374 TTAGTGTATTAATTGGAAAAGGCAGT 57.356 30.769 0.00 0.00 0.00 4.40
3456 3711 6.924111 AGTGTATTAATTGGAAAAGGCAGTG 58.076 36.000 0.00 0.00 0.00 3.66
3457 3712 5.576774 GTGTATTAATTGGAAAAGGCAGTGC 59.423 40.000 6.55 6.55 0.00 4.40
3483 3738 2.279517 CGCCTAGGCACGCTTAGG 60.280 66.667 32.47 19.92 45.29 2.69
3484 3739 2.782222 CGCCTAGGCACGCTTAGGA 61.782 63.158 32.47 0.00 45.33 2.94
3485 3740 1.520666 GCCTAGGCACGCTTAGGAA 59.479 57.895 29.33 0.00 45.33 3.36
3486 3741 0.810426 GCCTAGGCACGCTTAGGAAC 60.810 60.000 29.33 9.59 45.33 3.62
3487 3742 0.824759 CCTAGGCACGCTTAGGAACT 59.175 55.000 19.62 0.00 45.33 3.01
3488 3743 2.029623 CCTAGGCACGCTTAGGAACTA 58.970 52.381 19.62 0.00 45.33 2.24
3489 3744 2.034812 CCTAGGCACGCTTAGGAACTAG 59.965 54.545 19.62 5.53 45.33 2.57
3490 3745 0.824759 AGGCACGCTTAGGAACTAGG 59.175 55.000 0.00 0.00 44.25 3.02
3513 3768 3.425422 GCCAAATGCCTCGCCTAG 58.575 61.111 0.00 0.00 0.00 3.02
3515 3770 1.526917 CCAAATGCCTCGCCTAGGG 60.527 63.158 11.72 0.44 46.65 3.53
3516 3771 2.189499 CAAATGCCTCGCCTAGGGC 61.189 63.158 11.72 5.81 46.65 5.19
3529 3784 3.425162 CCTAGGGCATAAATGGGAGTC 57.575 52.381 0.00 0.00 0.00 3.36
3530 3785 2.982488 CCTAGGGCATAAATGGGAGTCT 59.018 50.000 0.00 0.00 0.00 3.24
3531 3786 4.168101 CCTAGGGCATAAATGGGAGTCTA 58.832 47.826 0.00 0.00 0.00 2.59
3532 3787 4.223923 CCTAGGGCATAAATGGGAGTCTAG 59.776 50.000 0.00 0.00 0.00 2.43
3533 3788 2.982488 AGGGCATAAATGGGAGTCTAGG 59.018 50.000 0.00 0.00 0.00 3.02
3534 3789 2.553247 GGGCATAAATGGGAGTCTAGGC 60.553 54.545 0.00 0.00 0.00 3.93
3535 3790 2.106511 GGCATAAATGGGAGTCTAGGCA 59.893 50.000 0.00 0.00 0.00 4.75
3536 3791 3.406764 GCATAAATGGGAGTCTAGGCAG 58.593 50.000 0.00 0.00 0.00 4.85
3537 3792 3.406764 CATAAATGGGAGTCTAGGCAGC 58.593 50.000 0.00 0.00 0.00 5.25
3538 3793 0.179000 AAATGGGAGTCTAGGCAGCG 59.821 55.000 0.00 0.00 0.00 5.18
3539 3794 2.317149 AATGGGAGTCTAGGCAGCGC 62.317 60.000 0.00 0.00 0.00 5.92
3540 3795 3.461773 GGGAGTCTAGGCAGCGCA 61.462 66.667 11.47 0.00 0.00 6.09
3541 3796 2.579201 GGAGTCTAGGCAGCGCAA 59.421 61.111 11.47 0.00 0.00 4.85
3542 3797 1.079127 GGAGTCTAGGCAGCGCAAA 60.079 57.895 11.47 0.00 0.00 3.68
3543 3798 0.673644 GGAGTCTAGGCAGCGCAAAA 60.674 55.000 11.47 0.00 0.00 2.44
3544 3799 0.444260 GAGTCTAGGCAGCGCAAAAC 59.556 55.000 11.47 0.00 0.00 2.43
3545 3800 0.250295 AGTCTAGGCAGCGCAAAACA 60.250 50.000 11.47 0.00 0.00 2.83
3546 3801 0.591170 GTCTAGGCAGCGCAAAACAA 59.409 50.000 11.47 0.00 0.00 2.83
3547 3802 1.001815 GTCTAGGCAGCGCAAAACAAA 60.002 47.619 11.47 0.00 0.00 2.83
3548 3803 1.678627 TCTAGGCAGCGCAAAACAAAA 59.321 42.857 11.47 0.00 0.00 2.44
3549 3804 2.099921 TCTAGGCAGCGCAAAACAAAAA 59.900 40.909 11.47 0.00 0.00 1.94
3570 3825 6.648725 AAAATTGTCTACCGAATCGAGAAG 57.351 37.500 3.36 0.00 0.00 2.85
3571 3826 4.985538 ATTGTCTACCGAATCGAGAAGT 57.014 40.909 3.36 0.00 0.00 3.01
3572 3827 4.352600 TTGTCTACCGAATCGAGAAGTC 57.647 45.455 3.36 0.00 0.00 3.01
3573 3828 3.340928 TGTCTACCGAATCGAGAAGTCA 58.659 45.455 3.36 0.00 0.00 3.41
3574 3829 3.945921 TGTCTACCGAATCGAGAAGTCAT 59.054 43.478 3.36 0.00 0.00 3.06
3575 3830 4.201920 TGTCTACCGAATCGAGAAGTCATG 60.202 45.833 3.36 0.00 0.00 3.07
3576 3831 1.927895 ACCGAATCGAGAAGTCATGC 58.072 50.000 3.36 0.00 0.00 4.06
3577 3832 1.212616 CCGAATCGAGAAGTCATGCC 58.787 55.000 3.36 0.00 0.00 4.40
3578 3833 1.471501 CCGAATCGAGAAGTCATGCCA 60.472 52.381 3.36 0.00 0.00 4.92
3579 3834 2.477825 CGAATCGAGAAGTCATGCCAT 58.522 47.619 0.00 0.00 0.00 4.40
3580 3835 3.552890 CCGAATCGAGAAGTCATGCCATA 60.553 47.826 3.36 0.00 0.00 2.74
3581 3836 4.240888 CGAATCGAGAAGTCATGCCATAT 58.759 43.478 0.00 0.00 0.00 1.78
3582 3837 4.687948 CGAATCGAGAAGTCATGCCATATT 59.312 41.667 0.00 0.00 0.00 1.28
3583 3838 5.389202 CGAATCGAGAAGTCATGCCATATTG 60.389 44.000 0.00 0.00 0.00 1.90
3584 3839 3.133691 TCGAGAAGTCATGCCATATTGC 58.866 45.455 0.00 0.00 0.00 3.56
3585 3840 2.874086 CGAGAAGTCATGCCATATTGCA 59.126 45.455 3.65 3.65 46.94 4.08
3610 3865 9.590451 CATTAATATGCCAAATGGGTCATATTC 57.410 33.333 19.75 0.00 44.26 1.75
3611 3866 8.954834 TTAATATGCCAAATGGGTCATATTCT 57.045 30.769 19.75 8.10 44.26 2.40
3612 3867 7.860649 AATATGCCAAATGGGTCATATTCTT 57.139 32.000 14.51 1.65 44.26 2.52
3613 3868 8.954834 AATATGCCAAATGGGTCATATTCTTA 57.045 30.769 14.51 0.00 44.26 2.10
3614 3869 9.551339 AATATGCCAAATGGGTCATATTCTTAT 57.449 29.630 14.51 0.58 44.26 1.73
3615 3870 6.653526 TGCCAAATGGGTCATATTCTTATG 57.346 37.500 0.90 0.00 39.65 1.90
3616 3871 6.135454 TGCCAAATGGGTCATATTCTTATGT 58.865 36.000 0.90 0.00 39.65 2.29
3617 3872 6.610830 TGCCAAATGGGTCATATTCTTATGTT 59.389 34.615 0.90 0.00 39.65 2.71
3618 3873 7.782168 TGCCAAATGGGTCATATTCTTATGTTA 59.218 33.333 0.90 0.00 39.65 2.41
3619 3874 8.299570 GCCAAATGGGTCATATTCTTATGTTAG 58.700 37.037 0.90 0.00 39.65 2.34
3620 3875 9.354673 CCAAATGGGTCATATTCTTATGTTAGT 57.645 33.333 0.00 0.00 37.16 2.24
3623 3878 9.726438 AATGGGTCATATTCTTATGTTAGTAGC 57.274 33.333 0.00 0.00 37.16 3.58
3624 3879 8.492415 TGGGTCATATTCTTATGTTAGTAGCT 57.508 34.615 0.00 0.00 37.16 3.32
3625 3880 8.934697 TGGGTCATATTCTTATGTTAGTAGCTT 58.065 33.333 0.00 0.00 37.16 3.74
3626 3881 9.209175 GGGTCATATTCTTATGTTAGTAGCTTG 57.791 37.037 0.00 0.00 37.16 4.01
3627 3882 9.765795 GGTCATATTCTTATGTTAGTAGCTTGT 57.234 33.333 0.00 0.00 37.16 3.16
3667 3922 7.849804 ATGCCCTCAAATAATATCGATACAC 57.150 36.000 7.41 0.00 0.00 2.90
3668 3923 6.764379 TGCCCTCAAATAATATCGATACACA 58.236 36.000 7.41 0.00 0.00 3.72
3669 3924 7.220740 TGCCCTCAAATAATATCGATACACAA 58.779 34.615 7.41 0.00 0.00 3.33
3670 3925 7.882791 TGCCCTCAAATAATATCGATACACAAT 59.117 33.333 7.41 0.00 0.00 2.71
3671 3926 9.378551 GCCCTCAAATAATATCGATACACAATA 57.621 33.333 7.41 0.00 0.00 1.90
3702 3957 9.739276 AACAACAGATACATCCTGATAGAAAAA 57.261 29.630 0.00 0.00 35.69 1.94
3721 3976 2.770164 AACATATGATCGCCTAGGCC 57.230 50.000 28.09 14.66 37.98 5.19
3722 3977 1.644509 ACATATGATCGCCTAGGCCA 58.355 50.000 28.09 19.99 37.98 5.36
3723 3978 1.276421 ACATATGATCGCCTAGGCCAC 59.724 52.381 28.09 18.47 37.98 5.01
3724 3979 0.532573 ATATGATCGCCTAGGCCACG 59.467 55.000 28.09 14.38 37.98 4.94
3725 3980 2.154798 TATGATCGCCTAGGCCACGC 62.155 60.000 28.09 14.91 37.98 5.34
3741 3996 2.189521 GCCTAGGGCGCTTAAGCA 59.810 61.111 26.29 6.27 39.62 3.91
3742 3997 2.180862 GCCTAGGGCGCTTAAGCAC 61.181 63.158 26.29 17.28 39.62 4.40
3743 3998 1.883084 CCTAGGGCGCTTAAGCACG 60.883 63.158 26.29 12.63 46.98 5.34
3744 3999 1.883084 CTAGGGCGCTTAAGCACGG 60.883 63.158 26.29 11.92 46.98 4.94
3748 4003 3.732892 GCGCTTAAGCACGGCCAA 61.733 61.111 26.29 0.00 42.21 4.52
3749 4004 2.175811 CGCTTAAGCACGGCCAAC 59.824 61.111 26.29 0.00 42.21 3.77
3750 4005 2.566529 GCTTAAGCACGGCCAACC 59.433 61.111 22.59 0.00 41.59 3.77
3761 4016 3.497031 GCCAACCGCCTCGCTTAC 61.497 66.667 0.00 0.00 0.00 2.34
3762 4017 3.186047 CCAACCGCCTCGCTTACG 61.186 66.667 0.00 0.00 42.01 3.18
3763 4018 3.849953 CAACCGCCTCGCTTACGC 61.850 66.667 0.00 0.00 39.84 4.42
3766 4021 3.896133 CCGCCTCGCTTACGCCTA 61.896 66.667 0.00 0.00 39.84 3.93
3767 4022 2.654404 CGCCTCGCTTACGCCTAC 60.654 66.667 0.00 0.00 39.84 3.18
3768 4023 2.279318 GCCTCGCTTACGCCTACC 60.279 66.667 0.00 0.00 39.84 3.18
3769 4024 2.025727 CCTCGCTTACGCCTACCG 59.974 66.667 0.00 0.00 44.21 4.02
3770 4025 2.654404 CTCGCTTACGCCTACCGC 60.654 66.667 0.00 0.00 41.76 5.68
3771 4026 3.122250 CTCGCTTACGCCTACCGCT 62.122 63.158 0.00 0.00 41.76 5.52
3772 4027 2.202703 CGCTTACGCCTACCGCTT 60.203 61.111 0.00 0.00 41.76 4.68
3773 4028 1.064621 CGCTTACGCCTACCGCTTA 59.935 57.895 0.00 0.00 41.76 3.09
3774 4029 0.318445 CGCTTACGCCTACCGCTTAT 60.318 55.000 0.00 0.00 41.76 1.73
3775 4030 1.861971 GCTTACGCCTACCGCTTATT 58.138 50.000 0.00 0.00 41.76 1.40
3776 4031 2.207590 GCTTACGCCTACCGCTTATTT 58.792 47.619 0.00 0.00 41.76 1.40
3777 4032 2.220363 GCTTACGCCTACCGCTTATTTC 59.780 50.000 0.00 0.00 41.76 2.17
3778 4033 3.450578 CTTACGCCTACCGCTTATTTCA 58.549 45.455 0.00 0.00 41.76 2.69
3779 4034 2.389962 ACGCCTACCGCTTATTTCAA 57.610 45.000 0.00 0.00 41.76 2.69
3780 4035 2.004733 ACGCCTACCGCTTATTTCAAC 58.995 47.619 0.00 0.00 41.76 3.18
3781 4036 1.329599 CGCCTACCGCTTATTTCAACC 59.670 52.381 0.00 0.00 34.21 3.77
3914 4170 4.228824 TGGCGGACCTAAAAGATATACCT 58.771 43.478 0.00 0.00 36.63 3.08
4072 4331 7.534282 TGTTTTCCTTTTTCTGCCAAAATTTC 58.466 30.769 0.00 0.00 0.00 2.17
4151 4410 4.201753 CGCACTTGATTGTGAGATGGTAAG 60.202 45.833 0.00 0.00 39.52 2.34
4284 4550 4.592778 AGGTTTACATTCATGCCACCTTTT 59.407 37.500 0.00 0.00 33.40 2.27
4292 4558 8.133024 ACATTCATGCCACCTTTTTATTCTTA 57.867 30.769 0.00 0.00 0.00 2.10
4479 4745 4.883083 TCGTCCCTATCACAATAATGCTC 58.117 43.478 0.00 0.00 0.00 4.26
4601 4867 6.611613 TTCTTCACACTTCAGTCTCCATAT 57.388 37.500 0.00 0.00 0.00 1.78
4730 5001 3.978460 GCTAGCTAGCCTGAACCTC 57.022 57.895 31.67 4.05 43.39 3.85
4748 5019 8.365399 TGAACCTCAACTATGCTATATTTTCG 57.635 34.615 0.00 0.00 0.00 3.46
5446 5748 2.489329 ACAGGTCATTACAAGCACATGC 59.511 45.455 0.00 0.00 42.49 4.06
5670 5972 5.618056 TTGCAGTTTTCTCAGATGATGAC 57.382 39.130 0.00 0.00 33.22 3.06
5702 6004 9.790344 CTCCAGATCAATGAAAGAGGTTAATAT 57.210 33.333 0.00 0.00 0.00 1.28
5740 6048 3.310774 AGCGTAATAGCATTGCTTCAGTG 59.689 43.478 17.71 6.04 40.44 3.66
5774 6082 8.230486 ACAAGTTCTCATTAGTTGCTAAAATCG 58.770 33.333 0.00 0.00 29.35 3.34
5775 6083 6.776094 AGTTCTCATTAGTTGCTAAAATCGC 58.224 36.000 0.00 0.00 29.35 4.58
5776 6084 6.371548 AGTTCTCATTAGTTGCTAAAATCGCA 59.628 34.615 0.00 0.00 35.22 5.10
6203 6511 5.488262 AACCTTTAGTAACCGTGGTATGT 57.512 39.130 0.00 0.00 0.00 2.29
6233 6541 7.147312 CAGATTAAAGAAAATGCTCAACCACA 58.853 34.615 0.00 0.00 0.00 4.17
6387 6695 0.933097 CGGAGATGGAACTTGATGCG 59.067 55.000 0.00 0.00 0.00 4.73
6428 6736 8.755018 CACTGTTAACAACCATTTTTGAAGATC 58.245 33.333 10.03 0.00 0.00 2.75
6776 7118 4.857509 TGTATTTTGCACCTGGGTAAAC 57.142 40.909 0.00 0.00 0.00 2.01
6791 7133 4.010349 GGGTAAACTCTGAAATCACCCAG 58.990 47.826 10.66 0.00 43.06 4.45
6849 7191 0.620030 TGTAGTGCACATGCCTCCAT 59.380 50.000 21.04 0.00 41.18 3.41
6876 7218 1.202582 GTCCCGAGCATCATAGCGTAT 59.797 52.381 0.00 0.00 40.15 3.06
6975 7319 6.671614 AACAAAGTGAGAACGAACATACAA 57.328 33.333 0.00 0.00 0.00 2.41
7071 7499 5.088680 ACTTGGCACCATGAATTTATTGG 57.911 39.130 9.37 1.85 36.56 3.16
7144 7572 1.076777 GGCTGGCATGGTATGTGGT 60.077 57.895 0.00 0.00 0.00 4.16
7148 7576 2.487086 GCTGGCATGGTATGTGGTGATA 60.487 50.000 0.00 0.00 0.00 2.15
7158 7586 2.278336 TGGTGATAGCGCGCGTAC 60.278 61.111 32.35 21.36 0.00 3.67
7287 8702 3.933861 AATGGACCCTTAAATCGCTCT 57.066 42.857 0.00 0.00 0.00 4.09
7291 8706 5.367945 TGGACCCTTAAATCGCTCTTAAT 57.632 39.130 0.00 0.00 0.00 1.40
7313 8728 2.793237 CGTTCAGACCGTTTTGTTTGGG 60.793 50.000 0.00 0.00 0.00 4.12
7332 8747 2.235016 GGTACACTTTGCCATCCAACA 58.765 47.619 0.00 0.00 31.97 3.33
7408 8830 1.137513 GAGTTTTGTCCAGACCGTCG 58.862 55.000 0.00 0.00 0.00 5.12
7422 8844 1.496393 CGTCGTCACGCAGTACTCT 59.504 57.895 0.00 0.00 41.61 3.24
7452 8874 1.001764 CCCACCTAAAACCCCGTCC 60.002 63.158 0.00 0.00 0.00 4.79
7459 8881 1.120795 TAAAACCCCGTCCGGACACT 61.121 55.000 32.80 9.79 37.50 3.55
7582 9004 2.649034 CTACACACGGTCGCCACT 59.351 61.111 0.00 0.00 0.00 4.00
7595 9017 2.166664 GTCGCCACTCTATTTGTCCTCT 59.833 50.000 0.00 0.00 0.00 3.69
7643 9065 0.744414 GCTGCACATGTACCATCCGT 60.744 55.000 0.00 0.00 0.00 4.69
7737 9362 1.872388 TCACAGACGATTTTTGCCGA 58.128 45.000 0.00 0.00 0.00 5.54
7921 9547 2.541178 GCAGATAAGTGGGACGAGTACG 60.541 54.545 0.00 0.00 45.75 3.67
8098 9727 2.883386 GGATCTCTTGATTGCATCCACC 59.117 50.000 0.00 0.00 34.27 4.61
8122 9753 3.575805 AGATGGAAGAACTGCCCAAAAA 58.424 40.909 0.00 0.00 33.15 1.94
8255 9889 2.823747 ACAATGACATCAATGTGCTGCT 59.176 40.909 1.76 0.00 41.95 4.24
8316 9950 3.845178 TCGTCCTTGCAACTATACTGTG 58.155 45.455 0.00 0.00 0.00 3.66
8318 9952 4.159693 TCGTCCTTGCAACTATACTGTGAT 59.840 41.667 0.00 0.00 0.00 3.06
8364 9998 8.710239 TGCTACTATCTGGTTGATGGTATTTAA 58.290 33.333 3.12 0.00 44.43 1.52
8395 10029 1.207089 CTACCTTCGCCAAGACCATCA 59.793 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.283613 TGTTGAACAAGTGGTGGAGGT 59.716 47.619 0.00 0.00 0.00 3.85
61 62 1.066929 GGGTGCAAATCCACAACATCC 60.067 52.381 0.00 0.00 37.46 3.51
84 85 3.307242 GTCAAGTTGACTCACATATCGGC 59.693 47.826 25.56 0.00 43.73 5.54
87 89 6.128445 CCTTGTGTCAAGTTGACTCACATATC 60.128 42.308 30.54 14.75 46.45 1.63
115 117 3.431207 CCCTTTTGATGGATCCATGCAAC 60.431 47.826 32.05 17.24 36.70 4.17
116 118 2.767394 CCCTTTTGATGGATCCATGCAA 59.233 45.455 32.05 27.13 36.70 4.08
129 131 6.013379 TGGAGTTATAAATGCACCCTTTTGA 58.987 36.000 2.79 0.00 0.00 2.69
156 158 1.571919 GACCATGGATCTTTCGTCGG 58.428 55.000 21.47 0.00 0.00 4.79
157 159 1.200483 CGACCATGGATCTTTCGTCG 58.800 55.000 21.47 10.87 37.39 5.12
196 198 2.496470 GTTCAGGGTTGTAGAGGTCGAT 59.504 50.000 0.00 0.00 0.00 3.59
200 202 1.893801 CTCGTTCAGGGTTGTAGAGGT 59.106 52.381 0.00 0.00 0.00 3.85
203 205 4.282449 TGAATTCTCGTTCAGGGTTGTAGA 59.718 41.667 7.05 0.00 33.41 2.59
208 210 3.485463 TGTGAATTCTCGTTCAGGGTT 57.515 42.857 7.05 0.00 38.68 4.11
212 214 5.784750 TTAGCATGTGAATTCTCGTTCAG 57.215 39.130 7.05 0.00 38.68 3.02
216 218 4.130118 GGGATTAGCATGTGAATTCTCGT 58.870 43.478 7.05 1.39 0.00 4.18
223 225 2.040947 TGTGTGGGGATTAGCATGTGAA 59.959 45.455 0.00 0.00 0.00 3.18
275 277 3.063997 GTGCATAAGGTGAAGATGTTCGG 59.936 47.826 0.00 0.00 35.17 4.30
276 278 3.935203 AGTGCATAAGGTGAAGATGTTCG 59.065 43.478 0.00 0.00 35.17 3.95
282 284 6.016610 GGTTACAAAAGTGCATAAGGTGAAGA 60.017 38.462 0.00 0.00 0.00 2.87
289 291 3.057876 TGGCGGTTACAAAAGTGCATAAG 60.058 43.478 0.00 0.00 0.00 1.73
302 304 2.218953 TTGAGATCGATGGCGGTTAC 57.781 50.000 0.54 0.00 38.28 2.50
303 305 2.971660 TTTGAGATCGATGGCGGTTA 57.028 45.000 0.54 0.00 38.28 2.85
314 316 5.125097 ACACCATGAAGCAGAATTTGAGATC 59.875 40.000 0.00 0.00 0.00 2.75
318 320 5.534207 AAACACCATGAAGCAGAATTTGA 57.466 34.783 0.00 0.00 0.00 2.69
342 344 2.506231 GTTTTCCTAGGAAGGGGAGAGG 59.494 54.545 23.11 0.00 43.84 3.69
359 361 6.169094 AGAACAGTGAGATCGATGATGTTTT 58.831 36.000 0.54 0.00 30.10 2.43
380 382 9.730705 ACTAATGAAGAATCTCAACATGAAGAA 57.269 29.630 0.00 0.00 0.00 2.52
381 383 9.730705 AACTAATGAAGAATCTCAACATGAAGA 57.269 29.630 0.00 0.00 0.00 2.87
439 441 1.638467 GACGCGAGCAATGATGGAC 59.362 57.895 15.93 0.00 0.00 4.02
445 447 1.341802 GTCTTCGACGCGAGCAATG 59.658 57.895 15.93 0.00 37.14 2.82
455 457 2.860735 CCATGGAGAATTCGTCTTCGAC 59.139 50.000 5.56 0.00 46.03 4.20
456 458 2.496070 ACCATGGAGAATTCGTCTTCGA 59.504 45.455 21.47 0.00 44.66 3.71
469 471 0.393537 GGTCTCAAGGCACCATGGAG 60.394 60.000 21.47 12.70 32.33 3.86
483 485 3.526534 GCAGATTAGACTGGTTGGTCTC 58.473 50.000 0.20 0.00 44.34 3.36
501 503 2.489073 GGTGATATAGGGTTTGGGGCAG 60.489 54.545 0.00 0.00 0.00 4.85
525 527 1.493854 ATACCCCGTTGTGGCAAGGA 61.494 55.000 0.00 0.00 35.87 3.36
538 541 3.952967 GGACGACTCTATCCATATACCCC 59.047 52.174 0.00 0.00 34.87 4.95
613 616 5.929992 CGGCGATATTTCTTATTGGGTCTTA 59.070 40.000 0.00 0.00 0.00 2.10
615 618 4.315803 CGGCGATATTTCTTATTGGGTCT 58.684 43.478 0.00 0.00 0.00 3.85
616 619 3.435671 CCGGCGATATTTCTTATTGGGTC 59.564 47.826 9.30 0.00 0.00 4.46
617 620 3.071892 TCCGGCGATATTTCTTATTGGGT 59.928 43.478 9.30 0.00 0.00 4.51
618 621 3.670625 TCCGGCGATATTTCTTATTGGG 58.329 45.455 9.30 0.00 0.00 4.12
631 634 2.606272 GACGAAAAACTTATCCGGCGAT 59.394 45.455 9.30 2.42 0.00 4.58
637 640 4.267214 GCTCTACCGACGAAAAACTTATCC 59.733 45.833 0.00 0.00 0.00 2.59
640 643 4.510038 AGCTCTACCGACGAAAAACTTA 57.490 40.909 0.00 0.00 0.00 2.24
644 647 5.050159 GGTTTAAAGCTCTACCGACGAAAAA 60.050 40.000 10.13 0.00 0.00 1.94
651 654 1.895131 ACGGGTTTAAAGCTCTACCGA 59.105 47.619 16.40 0.00 42.19 4.69
654 657 5.936686 AAGAAACGGGTTTAAAGCTCTAC 57.063 39.130 16.40 5.89 32.11 2.59
689 692 4.638304 TCAACCTCGGAAACTTCCTAAAG 58.362 43.478 6.91 2.15 45.33 1.85
744 747 6.521151 AAAACTATGCTCAATCCCTGAAAG 57.479 37.500 0.00 0.00 32.17 2.62
745 748 6.916360 AAAAACTATGCTCAATCCCTGAAA 57.084 33.333 0.00 0.00 32.17 2.69
769 772 6.003950 AGAAACTATGCTCAAGCCTTGTTAA 58.996 36.000 4.04 0.00 41.18 2.01
770 773 5.560724 AGAAACTATGCTCAAGCCTTGTTA 58.439 37.500 4.04 0.00 41.18 2.41
807 810 9.924650 GAGTATACCTAGAAACAACTCAAAAGA 57.075 33.333 0.00 0.00 33.69 2.52
808 811 9.930693 AGAGTATACCTAGAAACAACTCAAAAG 57.069 33.333 0.00 0.00 35.46 2.27
851 854 3.437795 CTTGCTGGGCTTGGCTCG 61.438 66.667 0.00 0.00 0.00 5.03
852 855 3.066814 CCTTGCTGGGCTTGGCTC 61.067 66.667 0.00 0.00 0.00 4.70
1137 1146 4.202223 GGACTTTACTAATCGCTGGATGGA 60.202 45.833 0.00 0.00 31.83 3.41
1280 1289 2.635787 ATACGTAGAGGCAGCGGGGA 62.636 60.000 0.08 0.00 0.00 4.81
1320 1329 0.390124 ACGGGAAGAAAGCACGTACA 59.610 50.000 0.00 0.00 35.85 2.90
1633 1661 8.471609 TCTCTATGTCGTATTTGTACCATGAAA 58.528 33.333 0.00 0.00 0.00 2.69
1634 1662 8.002984 TCTCTATGTCGTATTTGTACCATGAA 57.997 34.615 0.00 0.00 0.00 2.57
1635 1663 7.576861 TCTCTATGTCGTATTTGTACCATGA 57.423 36.000 0.00 0.00 0.00 3.07
1771 1811 6.530567 CAAACTCTGATAACAAAATACGCGA 58.469 36.000 15.93 0.00 0.00 5.87
1774 1814 7.938971 GAGCAAACTCTGATAACAAAATACG 57.061 36.000 0.00 0.00 40.03 3.06
1936 1977 6.889301 ATAAGCAAATATCCACATGTCCAG 57.111 37.500 0.00 0.00 0.00 3.86
2162 2234 4.942761 AAGTCAGTGGTCAATTTGCATT 57.057 36.364 0.00 0.00 0.00 3.56
2459 2532 7.871463 ACACTAGTGACCTTAAACATCTTACAC 59.129 37.037 29.30 0.00 0.00 2.90
2485 2558 3.477504 CGTAAGACGTTTCGGGTCA 57.522 52.632 0.00 0.00 43.02 4.02
2591 2666 9.639601 TCGGCATCTATAATTCACTTATTGTAG 57.360 33.333 0.00 0.00 33.18 2.74
2661 2736 8.899771 GGGTTTCTAAAGCAGCAAATAATACTA 58.100 33.333 6.93 0.00 38.11 1.82
3064 3150 7.377398 TCATATGATTGGTTTGAAGTTTGTGG 58.623 34.615 0.00 0.00 0.00 4.17
3072 3158 8.635328 CCATCAGATTCATATGATTGGTTTGAA 58.365 33.333 6.17 0.00 36.67 2.69
3114 3200 8.182227 GGTACAATAGACACAATTTTTAGGAGC 58.818 37.037 0.00 0.00 0.00 4.70
3180 3266 5.738619 TTTCAGTGCCTAATGACTACTCA 57.261 39.130 0.00 0.00 29.45 3.41
3190 3276 7.011389 CGAACATCATATCTTTTCAGTGCCTAA 59.989 37.037 0.00 0.00 0.00 2.69
3239 3494 6.982141 AGCTGCCATGTGACATTTAAAATATG 59.018 34.615 0.00 0.00 0.00 1.78
3399 3654 8.677300 AGTGAATGGCTAAATGTACATAAACAG 58.323 33.333 9.21 5.32 31.70 3.16
3459 3714 2.838225 GTGCCTAGGCGCCTCCTA 60.838 66.667 36.73 15.93 45.41 2.94
3466 3721 2.279517 CCTAAGCGTGCCTAGGCG 60.280 66.667 28.28 16.34 45.51 5.52
3467 3722 0.810426 GTTCCTAAGCGTGCCTAGGC 60.810 60.000 27.71 27.71 42.35 3.93
3468 3723 0.824759 AGTTCCTAAGCGTGCCTAGG 59.175 55.000 3.67 3.67 0.00 3.02
3469 3724 2.034812 CCTAGTTCCTAAGCGTGCCTAG 59.965 54.545 0.00 0.00 0.00 3.02
3470 3725 2.029623 CCTAGTTCCTAAGCGTGCCTA 58.970 52.381 0.00 0.00 0.00 3.93
3471 3726 0.824759 CCTAGTTCCTAAGCGTGCCT 59.175 55.000 0.00 0.00 0.00 4.75
3472 3727 0.810426 GCCTAGTTCCTAAGCGTGCC 60.810 60.000 0.00 0.00 0.00 5.01
3473 3728 0.108329 TGCCTAGTTCCTAAGCGTGC 60.108 55.000 0.00 0.00 0.00 5.34
3474 3729 2.380084 TTGCCTAGTTCCTAAGCGTG 57.620 50.000 0.00 0.00 0.00 5.34
3475 3730 2.420129 CCATTGCCTAGTTCCTAAGCGT 60.420 50.000 0.00 0.00 0.00 5.07
3476 3731 2.213499 CCATTGCCTAGTTCCTAAGCG 58.787 52.381 0.00 0.00 0.00 4.68
3477 3732 1.950216 GCCATTGCCTAGTTCCTAAGC 59.050 52.381 0.00 0.00 0.00 3.09
3496 3751 2.189499 CCTAGGCGAGGCATTTGGC 61.189 63.158 0.00 0.00 38.96 4.52
3497 3752 1.526917 CCCTAGGCGAGGCATTTGG 60.527 63.158 8.32 0.00 45.17 3.28
3498 3753 4.147701 CCCTAGGCGAGGCATTTG 57.852 61.111 8.32 0.00 45.17 2.32
3509 3764 2.982488 AGACTCCCATTTATGCCCTAGG 59.018 50.000 0.06 0.06 0.00 3.02
3510 3765 4.223923 CCTAGACTCCCATTTATGCCCTAG 59.776 50.000 0.00 0.00 0.00 3.02
3511 3766 4.168101 CCTAGACTCCCATTTATGCCCTA 58.832 47.826 0.00 0.00 0.00 3.53
3512 3767 2.982488 CCTAGACTCCCATTTATGCCCT 59.018 50.000 0.00 0.00 0.00 5.19
3513 3768 2.553247 GCCTAGACTCCCATTTATGCCC 60.553 54.545 0.00 0.00 0.00 5.36
3514 3769 2.106511 TGCCTAGACTCCCATTTATGCC 59.893 50.000 0.00 0.00 0.00 4.40
3515 3770 3.406764 CTGCCTAGACTCCCATTTATGC 58.593 50.000 0.00 0.00 0.00 3.14
3516 3771 3.406764 GCTGCCTAGACTCCCATTTATG 58.593 50.000 0.00 0.00 0.00 1.90
3517 3772 2.037772 CGCTGCCTAGACTCCCATTTAT 59.962 50.000 0.00 0.00 0.00 1.40
3518 3773 1.412710 CGCTGCCTAGACTCCCATTTA 59.587 52.381 0.00 0.00 0.00 1.40
3519 3774 0.179000 CGCTGCCTAGACTCCCATTT 59.821 55.000 0.00 0.00 0.00 2.32
3520 3775 1.826024 CGCTGCCTAGACTCCCATT 59.174 57.895 0.00 0.00 0.00 3.16
3521 3776 2.801631 GCGCTGCCTAGACTCCCAT 61.802 63.158 0.00 0.00 0.00 4.00
3522 3777 3.461773 GCGCTGCCTAGACTCCCA 61.462 66.667 0.00 0.00 0.00 4.37
3523 3778 2.521958 TTTGCGCTGCCTAGACTCCC 62.522 60.000 9.73 0.00 0.00 4.30
3524 3779 0.673644 TTTTGCGCTGCCTAGACTCC 60.674 55.000 9.73 0.00 0.00 3.85
3525 3780 0.444260 GTTTTGCGCTGCCTAGACTC 59.556 55.000 9.73 0.00 0.00 3.36
3526 3781 0.250295 TGTTTTGCGCTGCCTAGACT 60.250 50.000 9.73 0.00 0.00 3.24
3527 3782 0.591170 TTGTTTTGCGCTGCCTAGAC 59.409 50.000 9.73 0.00 0.00 2.59
3528 3783 1.313772 TTTGTTTTGCGCTGCCTAGA 58.686 45.000 9.73 0.00 0.00 2.43
3529 3784 2.132740 TTTTGTTTTGCGCTGCCTAG 57.867 45.000 9.73 0.00 0.00 3.02
3530 3785 2.586258 TTTTTGTTTTGCGCTGCCTA 57.414 40.000 9.73 0.00 0.00 3.93
3531 3786 3.450028 TTTTTGTTTTGCGCTGCCT 57.550 42.105 9.73 0.00 0.00 4.75
3546 3801 6.649557 ACTTCTCGATTCGGTAGACAATTTTT 59.350 34.615 6.18 0.00 0.00 1.94
3547 3802 6.164176 ACTTCTCGATTCGGTAGACAATTTT 58.836 36.000 6.18 0.00 0.00 1.82
3548 3803 5.721232 ACTTCTCGATTCGGTAGACAATTT 58.279 37.500 6.18 0.00 0.00 1.82
3549 3804 5.105877 TGACTTCTCGATTCGGTAGACAATT 60.106 40.000 6.18 0.00 0.00 2.32
3550 3805 4.398358 TGACTTCTCGATTCGGTAGACAAT 59.602 41.667 6.18 0.00 0.00 2.71
3551 3806 3.754850 TGACTTCTCGATTCGGTAGACAA 59.245 43.478 6.18 0.00 0.00 3.18
3552 3807 3.340928 TGACTTCTCGATTCGGTAGACA 58.659 45.455 6.18 5.40 0.00 3.41
3553 3808 4.283678 CATGACTTCTCGATTCGGTAGAC 58.716 47.826 6.18 3.07 0.00 2.59
3554 3809 3.243101 GCATGACTTCTCGATTCGGTAGA 60.243 47.826 6.18 0.00 0.00 2.59
3555 3810 3.046390 GCATGACTTCTCGATTCGGTAG 58.954 50.000 6.18 4.15 0.00 3.18
3556 3811 2.223735 GGCATGACTTCTCGATTCGGTA 60.224 50.000 6.18 0.00 0.00 4.02
3557 3812 1.471676 GGCATGACTTCTCGATTCGGT 60.472 52.381 6.18 0.00 0.00 4.69
3558 3813 1.212616 GGCATGACTTCTCGATTCGG 58.787 55.000 6.18 0.00 0.00 4.30
3559 3814 1.926561 TGGCATGACTTCTCGATTCG 58.073 50.000 0.00 0.00 0.00 3.34
3560 3815 5.616424 GCAATATGGCATGACTTCTCGATTC 60.616 44.000 10.98 0.00 0.00 2.52
3561 3816 4.214971 GCAATATGGCATGACTTCTCGATT 59.785 41.667 10.98 0.00 0.00 3.34
3562 3817 3.750130 GCAATATGGCATGACTTCTCGAT 59.250 43.478 10.98 0.00 0.00 3.59
3563 3818 3.133691 GCAATATGGCATGACTTCTCGA 58.866 45.455 10.98 0.00 0.00 4.04
3564 3819 2.874086 TGCAATATGGCATGACTTCTCG 59.126 45.455 10.98 0.00 39.25 4.04
3584 3839 9.590451 GAATATGACCCATTTGGCATATTAATG 57.410 33.333 16.16 3.21 44.65 1.90
3585 3840 9.551339 AGAATATGACCCATTTGGCATATTAAT 57.449 29.630 16.16 9.65 44.65 1.40
3586 3841 8.954834 AGAATATGACCCATTTGGCATATTAA 57.045 30.769 16.16 0.00 44.65 1.40
3587 3842 8.954834 AAGAATATGACCCATTTGGCATATTA 57.045 30.769 16.16 0.00 44.65 0.98
3588 3843 7.860649 AAGAATATGACCCATTTGGCATATT 57.139 32.000 16.14 16.14 45.82 1.28
3589 3844 8.974238 CATAAGAATATGACCCATTTGGCATAT 58.026 33.333 0.00 0.00 41.53 1.78
3590 3845 7.949565 ACATAAGAATATGACCCATTTGGCATA 59.050 33.333 3.03 0.00 41.25 3.14
3591 3846 6.783977 ACATAAGAATATGACCCATTTGGCAT 59.216 34.615 3.03 0.00 41.25 4.40
3592 3847 6.135454 ACATAAGAATATGACCCATTTGGCA 58.865 36.000 3.03 0.00 41.25 4.92
3593 3848 6.655078 ACATAAGAATATGACCCATTTGGC 57.345 37.500 3.03 0.00 41.25 4.52
3594 3849 9.354673 ACTAACATAAGAATATGACCCATTTGG 57.645 33.333 3.03 0.00 41.25 3.28
3597 3852 9.726438 GCTACTAACATAAGAATATGACCCATT 57.274 33.333 3.03 0.00 41.25 3.16
3598 3853 9.105844 AGCTACTAACATAAGAATATGACCCAT 57.894 33.333 3.03 0.00 41.25 4.00
3599 3854 8.492415 AGCTACTAACATAAGAATATGACCCA 57.508 34.615 3.03 0.00 41.25 4.51
3600 3855 9.209175 CAAGCTACTAACATAAGAATATGACCC 57.791 37.037 3.03 0.00 41.25 4.46
3601 3856 9.765795 ACAAGCTACTAACATAAGAATATGACC 57.234 33.333 3.03 0.00 41.25 4.02
3641 3896 9.547753 GTGTATCGATATTATTTGAGGGCATAT 57.452 33.333 8.66 0.00 0.00 1.78
3642 3897 8.536175 TGTGTATCGATATTATTTGAGGGCATA 58.464 33.333 8.66 0.00 0.00 3.14
3643 3898 7.394016 TGTGTATCGATATTATTTGAGGGCAT 58.606 34.615 8.66 0.00 0.00 4.40
3644 3899 6.764379 TGTGTATCGATATTATTTGAGGGCA 58.236 36.000 8.66 0.00 0.00 5.36
3645 3900 7.667043 TTGTGTATCGATATTATTTGAGGGC 57.333 36.000 8.66 0.00 0.00 5.19
3676 3931 9.739276 TTTTTCTATCAGGATGTATCTGTTGTT 57.261 29.630 0.00 0.00 37.40 2.83
3699 3954 3.821033 GGCCTAGGCGATCATATGTTTTT 59.179 43.478 27.24 0.00 43.06 1.94
3700 3955 3.181445 TGGCCTAGGCGATCATATGTTTT 60.181 43.478 27.24 0.00 43.06 2.43
3701 3956 2.371841 TGGCCTAGGCGATCATATGTTT 59.628 45.455 27.24 0.00 43.06 2.83
3702 3957 1.977854 TGGCCTAGGCGATCATATGTT 59.022 47.619 27.24 0.00 43.06 2.71
3703 3958 1.276421 GTGGCCTAGGCGATCATATGT 59.724 52.381 27.24 0.00 43.06 2.29
3704 3959 1.737029 CGTGGCCTAGGCGATCATATG 60.737 57.143 27.24 10.41 43.06 1.78
3705 3960 0.532573 CGTGGCCTAGGCGATCATAT 59.467 55.000 27.24 0.00 43.06 1.78
3706 3961 1.964448 CGTGGCCTAGGCGATCATA 59.036 57.895 27.24 6.52 43.06 2.15
3707 3962 2.737180 CGTGGCCTAGGCGATCAT 59.263 61.111 27.24 0.00 43.06 2.45
3708 3963 4.221422 GCGTGGCCTAGGCGATCA 62.221 66.667 27.24 16.91 43.06 2.92
3709 3964 4.971125 GGCGTGGCCTAGGCGATC 62.971 72.222 27.24 18.03 46.69 3.69
3724 3979 2.180862 GTGCTTAAGCGCCCTAGGC 61.181 63.158 27.05 9.12 45.15 3.93
3725 3980 4.126524 GTGCTTAAGCGCCCTAGG 57.873 61.111 27.05 0.06 45.15 3.02
3732 3987 2.175811 GTTGGCCGTGCTTAAGCG 59.824 61.111 21.97 9.53 45.83 4.68
3733 3988 2.566529 GGTTGGCCGTGCTTAAGC 59.433 61.111 20.84 20.84 42.50 3.09
3744 3999 3.497031 GTAAGCGAGGCGGTTGGC 61.497 66.667 13.64 4.02 46.80 4.52
3745 4000 3.186047 CGTAAGCGAGGCGGTTGG 61.186 66.667 13.64 3.06 46.80 3.77
3762 4017 2.640184 AGGTTGAAATAAGCGGTAGGC 58.360 47.619 0.00 0.00 44.05 3.93
3763 4018 3.626217 GGAAGGTTGAAATAAGCGGTAGG 59.374 47.826 0.00 0.00 0.00 3.18
3764 4019 4.514401 AGGAAGGTTGAAATAAGCGGTAG 58.486 43.478 0.00 0.00 0.00 3.18
3765 4020 4.563140 AGGAAGGTTGAAATAAGCGGTA 57.437 40.909 0.00 0.00 0.00 4.02
3766 4021 3.434940 AGGAAGGTTGAAATAAGCGGT 57.565 42.857 0.00 0.00 0.00 5.68
3767 4022 4.380550 GGAAAGGAAGGTTGAAATAAGCGG 60.381 45.833 0.00 0.00 0.00 5.52
3768 4023 4.459337 AGGAAAGGAAGGTTGAAATAAGCG 59.541 41.667 0.00 0.00 0.00 4.68
3769 4024 5.984695 AGGAAAGGAAGGTTGAAATAAGC 57.015 39.130 0.00 0.00 0.00 3.09
3770 4025 8.678199 GTCATAGGAAAGGAAGGTTGAAATAAG 58.322 37.037 0.00 0.00 0.00 1.73
3771 4026 8.167392 TGTCATAGGAAAGGAAGGTTGAAATAA 58.833 33.333 0.00 0.00 0.00 1.40
3772 4027 7.695055 TGTCATAGGAAAGGAAGGTTGAAATA 58.305 34.615 0.00 0.00 0.00 1.40
3773 4028 6.552008 TGTCATAGGAAAGGAAGGTTGAAAT 58.448 36.000 0.00 0.00 0.00 2.17
3774 4029 5.947663 TGTCATAGGAAAGGAAGGTTGAAA 58.052 37.500 0.00 0.00 0.00 2.69
3775 4030 5.576563 TGTCATAGGAAAGGAAGGTTGAA 57.423 39.130 0.00 0.00 0.00 2.69
3776 4031 5.073144 ACTTGTCATAGGAAAGGAAGGTTGA 59.927 40.000 0.00 0.00 0.00 3.18
3777 4032 5.182001 CACTTGTCATAGGAAAGGAAGGTTG 59.818 44.000 0.00 0.00 0.00 3.77
3778 4033 5.316987 CACTTGTCATAGGAAAGGAAGGTT 58.683 41.667 0.00 0.00 0.00 3.50
3779 4034 4.263506 CCACTTGTCATAGGAAAGGAAGGT 60.264 45.833 0.00 0.00 0.00 3.50
3780 4035 4.265073 CCACTTGTCATAGGAAAGGAAGG 58.735 47.826 0.00 0.00 0.00 3.46
3781 4036 4.265073 CCCACTTGTCATAGGAAAGGAAG 58.735 47.826 4.97 0.00 0.00 3.46
3837 4092 7.217906 AGGTTAACAAATCGCCCAAAATAAAA 58.782 30.769 8.10 0.00 0.00 1.52
4010 4267 2.158914 GGGCATAAAATTGGAAGGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
4256 4518 5.359576 GGTGGCATGAATGTAAACCTATGAA 59.640 40.000 0.00 0.00 0.00 2.57
4257 4519 4.887071 GGTGGCATGAATGTAAACCTATGA 59.113 41.667 0.00 0.00 0.00 2.15
4258 4520 4.889409 AGGTGGCATGAATGTAAACCTATG 59.111 41.667 0.00 0.00 36.17 2.23
4260 4522 4.584638 AGGTGGCATGAATGTAAACCTA 57.415 40.909 0.00 0.00 36.17 3.08
4261 4523 3.456380 AGGTGGCATGAATGTAAACCT 57.544 42.857 0.00 7.48 34.43 3.50
4262 4524 4.535526 AAAGGTGGCATGAATGTAAACC 57.464 40.909 0.00 0.00 0.00 3.27
4263 4525 8.546597 AATAAAAAGGTGGCATGAATGTAAAC 57.453 30.769 0.00 0.00 0.00 2.01
4264 4526 8.592809 AGAATAAAAAGGTGGCATGAATGTAAA 58.407 29.630 0.00 0.00 0.00 2.01
4265 4527 8.133024 AGAATAAAAAGGTGGCATGAATGTAA 57.867 30.769 0.00 0.00 0.00 2.41
4272 4538 8.469200 TCAGAATAAGAATAAAAAGGTGGCATG 58.531 33.333 0.00 0.00 0.00 4.06
4479 4745 7.409697 TCAAAAGAAAACAGAAATCTGAGTCG 58.590 34.615 16.93 0.00 46.59 4.18
4730 5001 6.425114 ACTGGCTCGAAAATATAGCATAGTTG 59.575 38.462 0.00 0.00 38.01 3.16
4748 5019 0.603975 ACGCTGAGGAAAACTGGCTC 60.604 55.000 0.00 0.00 0.00 4.70
5670 5972 0.755079 TCATTGATCTGGAGAGGGCG 59.245 55.000 0.00 0.00 0.00 6.13
5709 6016 5.235616 GCAATGCTATTACGCTACCACTAAA 59.764 40.000 0.00 0.00 0.00 1.85
5720 6027 5.663795 ATCACTGAAGCAATGCTATTACG 57.336 39.130 8.68 0.00 38.25 3.18
5721 6028 8.693542 AAAAATCACTGAAGCAATGCTATTAC 57.306 30.769 8.68 1.47 38.25 1.89
5774 6082 2.813754 TGTCATTCTTTACCTGCAGTGC 59.186 45.455 13.81 8.58 0.00 4.40
5775 6083 5.437289 TTTGTCATTCTTTACCTGCAGTG 57.563 39.130 13.81 6.81 0.00 3.66
5776 6084 6.265196 TGATTTTGTCATTCTTTACCTGCAGT 59.735 34.615 13.81 3.45 0.00 4.40
6203 6511 7.160547 TGAGCATTTTCTTTAATCTGCATGA 57.839 32.000 0.00 0.00 30.94 3.07
6233 6541 3.181495 CGGCTATCGACTGTTTCTTCTCT 60.181 47.826 0.00 0.00 42.43 3.10
6350 6658 1.546773 CCGGAACATGTGGGGAAAAGA 60.547 52.381 0.00 0.00 0.00 2.52
6381 6689 0.393402 AAGCTCAGAATGGCGCATCA 60.393 50.000 10.83 0.00 37.36 3.07
6387 6695 0.170561 CAGTGCAAGCTCAGAATGGC 59.829 55.000 0.00 0.00 36.16 4.40
6428 6736 2.482721 GGGGTGTTTGTGAGTTACATCG 59.517 50.000 0.00 0.00 39.48 3.84
6776 7118 7.510549 TTTTAGTTTCTGGGTGATTTCAGAG 57.489 36.000 0.00 0.00 40.55 3.35
6849 7191 1.847328 TGATGCTCGGGACTACTTCA 58.153 50.000 0.00 0.00 0.00 3.02
6975 7319 2.361438 GCATCCGTAGCACCTAGTAACT 59.639 50.000 0.00 0.00 0.00 2.24
7071 7499 0.387565 ACATTCCGGTGTTGGTTTGC 59.612 50.000 0.00 0.00 0.00 3.68
7144 7572 2.052502 CGAGTACGCGCGCTATCA 60.053 61.111 32.58 7.17 0.00 2.15
7158 7586 0.609131 ACTGGGCCAAATTGTCCGAG 60.609 55.000 8.04 3.56 0.00 4.63
7287 8702 5.738118 AACAAAACGGTCTGAACGATTAA 57.262 34.783 23.46 0.00 34.93 1.40
7291 8706 2.096174 CCAAACAAAACGGTCTGAACGA 59.904 45.455 23.46 0.00 34.93 3.85
7313 8728 2.030274 GGTGTTGGATGGCAAAGTGTAC 60.030 50.000 0.00 0.00 0.00 2.90
7349 8764 3.279434 GTGAAAAACAGACTGGTCCACT 58.721 45.455 7.51 0.00 0.00 4.00
7408 8830 1.666311 GGTGTCAGAGTACTGCGTGAC 60.666 57.143 17.21 17.21 43.17 3.67
7422 8844 0.708209 TAGGTGGGCTAGAGGTGTCA 59.292 55.000 0.00 0.00 0.00 3.58
7459 8881 0.035439 GAGGGAAGGATGGAAACGCA 60.035 55.000 0.00 0.00 0.00 5.24
7515 8937 2.426023 GGCGGCTGGTATGGTAGG 59.574 66.667 0.00 0.00 0.00 3.18
7561 8983 2.664436 GGCGACCGTGTGTAGCAAC 61.664 63.158 0.00 0.00 46.27 4.17
7582 9004 1.195115 AGCGGCAGAGGACAAATAGA 58.805 50.000 1.45 0.00 0.00 1.98
7595 9017 2.603473 AGGTGTGGACTAGCGGCA 60.603 61.111 1.45 0.00 0.00 5.69
7660 9082 0.940519 CACCAAACACTTGCCATGCG 60.941 55.000 0.00 0.00 0.00 4.73
7921 9547 0.790814 GTGCTCTTAGACAACCGCAC 59.209 55.000 7.58 7.58 40.53 5.34
8098 9727 1.339055 TGGGCAGTTCTTCCATCTTCG 60.339 52.381 0.00 0.00 0.00 3.79
8122 9753 2.612972 CGTGACATTGCCCTTGTAGAGT 60.613 50.000 0.00 0.00 0.00 3.24
8255 9889 4.507710 CCTAGCAAACAATAGAGACTGCA 58.492 43.478 0.00 0.00 32.21 4.41
8316 9950 5.581605 CACATGTTGTACTAATGGCCAATC 58.418 41.667 10.96 0.00 0.00 2.67
8318 9952 3.192422 GCACATGTTGTACTAATGGCCAA 59.808 43.478 10.96 0.00 0.00 4.52
8364 9998 1.271656 GCGAAGGTAGCCCACGTATAT 59.728 52.381 0.00 0.00 35.97 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.