Multiple sequence alignment - TraesCS3D01G310500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310500 chr3D 100.000 4966 0 0 1345 6310 424661377 424656412 0.000000e+00 9171.0
1 TraesCS3D01G310500 chr3D 100.000 1046 0 0 1 1046 424662721 424661676 0.000000e+00 1932.0
2 TraesCS3D01G310500 chr3A 94.890 4423 162 37 1345 5733 564340747 564345139 0.000000e+00 6857.0
3 TraesCS3D01G310500 chr3A 91.558 308 22 4 741 1046 564340409 564340714 7.560000e-114 422.0
4 TraesCS3D01G310500 chr3A 90.645 310 25 2 6005 6310 564345388 564345697 5.890000e-110 409.0
5 TraesCS3D01G310500 chr3A 92.784 97 5 1 3049 3143 80090861 80090957 8.530000e-29 139.0
6 TraesCS3D01G310500 chr3A 88.000 75 7 2 5946 6018 213779712 213779638 3.130000e-13 87.9
7 TraesCS3D01G310500 chr3B 94.120 2313 110 16 3528 5828 554699450 554697152 0.000000e+00 3494.0
8 TraesCS3D01G310500 chr3B 93.849 2146 76 27 1345 3460 554701558 554699439 0.000000e+00 3181.0
9 TraesCS3D01G310500 chr3B 90.996 522 30 10 539 1046 554702110 554701592 0.000000e+00 688.0
10 TraesCS3D01G310500 chr3B 90.456 241 22 1 6071 6310 554649750 554649510 3.670000e-82 316.0
11 TraesCS3D01G310500 chr6D 91.855 2394 120 20 2223 4582 469512065 469509713 0.000000e+00 3271.0
12 TraesCS3D01G310500 chr6D 92.528 2128 99 15 2474 4582 469492991 469490905 0.000000e+00 2994.0
13 TraesCS3D01G310500 chr6D 90.034 582 31 5 5268 5846 457065388 457064831 0.000000e+00 728.0
14 TraesCS3D01G310500 chr6D 88.235 510 31 7 4569 5049 469508134 469507625 3.280000e-162 582.0
15 TraesCS3D01G310500 chr6D 93.729 303 18 1 4569 4870 469489324 469489022 2.680000e-123 453.0
16 TraesCS3D01G310500 chr6D 94.118 272 14 2 4880 5150 457068346 457068076 4.550000e-111 412.0
17 TraesCS3D01G310500 chr6D 87.307 323 25 7 1568 1874 469512662 469512340 7.780000e-94 355.0
18 TraesCS3D01G310500 chr6D 90.517 232 22 0 6079 6310 457011844 457011613 2.210000e-79 307.0
19 TraesCS3D01G310500 chr6D 88.382 241 24 3 5848 6085 457064724 457064485 2.880000e-73 287.0
20 TraesCS3D01G310500 chr6D 93.085 188 13 0 4862 5049 469489002 469488815 6.230000e-70 276.0
21 TraesCS3D01G310500 chr6D 93.151 146 8 2 5141 5285 457065611 457065467 4.960000e-51 213.0
22 TraesCS3D01G310500 chr6D 85.714 203 19 5 1439 1632 469512864 469512663 8.290000e-49 206.0
23 TraesCS3D01G310500 chr6D 78.025 314 16 19 1898 2192 469512344 469512065 1.420000e-31 148.0
24 TraesCS3D01G310500 chr6D 97.297 37 1 0 2447 2483 469511752 469511716 5.280000e-06 63.9
25 TraesCS3D01G310500 chr6D 94.595 37 2 0 2447 2483 469492944 469492908 2.460000e-04 58.4
26 TraesCS3D01G310500 chr5D 90.323 620 32 15 4883 5501 547260245 547260837 0.000000e+00 787.0
27 TraesCS3D01G310500 chr5D 94.787 422 8 7 3741 4161 547259839 547260247 0.000000e+00 645.0
28 TraesCS3D01G310500 chr5D 92.373 236 18 0 6074 6309 547260909 547261144 2.820000e-88 337.0
29 TraesCS3D01G310500 chr5D 94.737 95 4 1 3049 3142 134780599 134780505 5.100000e-31 147.0
30 TraesCS3D01G310500 chrUn 92.084 379 24 3 2550 2922 480365466 480365844 4.330000e-146 529.0
31 TraesCS3D01G310500 chrUn 84.698 281 32 3 2 271 330416940 330416660 2.900000e-68 270.0
32 TraesCS3D01G310500 chrUn 84.698 281 32 3 2 271 441045282 441045002 2.900000e-68 270.0
33 TraesCS3D01G310500 chrUn 84.342 281 33 3 2 271 397291362 397291082 1.350000e-66 265.0
34 TraesCS3D01G310500 chrUn 83.986 281 34 3 2 271 76105503 76105783 6.280000e-65 259.0
35 TraesCS3D01G310500 chrUn 88.535 157 17 1 349 504 397291051 397290895 8.350000e-44 189.0
36 TraesCS3D01G310500 chrUn 87.975 158 18 1 348 504 424726297 424726140 1.080000e-42 185.0
37 TraesCS3D01G310500 chr5B 85.993 307 33 5 197 503 13385033 13384737 2.840000e-83 320.0
38 TraesCS3D01G310500 chr5B 88.957 163 18 0 3 165 13385193 13385031 1.070000e-47 202.0
39 TraesCS3D01G310500 chr5B 92.784 97 4 2 3048 3144 17982697 17982604 3.070000e-28 137.0
40 TraesCS3D01G310500 chr6B 84.342 281 33 3 2 271 12544970 12545250 1.350000e-66 265.0
41 TraesCS3D01G310500 chr6B 88.535 157 17 1 349 504 12545281 12545437 8.350000e-44 189.0
42 TraesCS3D01G310500 chr6B 85.714 84 8 3 3081 3160 688371906 688371989 1.130000e-12 86.1
43 TraesCS3D01G310500 chr1B 90.303 165 16 0 1 165 454912879 454913043 3.830000e-52 217.0
44 TraesCS3D01G310500 chr1B 84.404 109 8 4 3049 3157 510799178 510799079 1.450000e-16 99.0
45 TraesCS3D01G310500 chr7B 89.697 165 17 0 1 165 692359877 692359713 1.780000e-50 211.0
46 TraesCS3D01G310500 chr7B 89.634 164 16 1 1 164 8540543 8540381 2.310000e-49 207.0
47 TraesCS3D01G310500 chr7B 92.079 101 4 2 3049 3149 329083561 329083657 8.530000e-29 139.0
48 TraesCS3D01G310500 chr2D 93.000 100 3 1 3049 3144 83966781 83966682 6.590000e-30 143.0
49 TraesCS3D01G310500 chr2D 91.837 98 8 0 3046 3143 376700830 376700733 3.070000e-28 137.0
50 TraesCS3D01G310500 chr2D 86.667 75 8 1 5946 6018 39404598 39404524 1.460000e-11 82.4
51 TraesCS3D01G310500 chr2A 91.262 103 4 4 3047 3144 746253395 746253497 1.100000e-27 135.0
52 TraesCS3D01G310500 chr2A 85.586 111 5 3 3049 3157 539325662 539325561 8.650000e-19 106.0
53 TraesCS3D01G310500 chr2A 88.158 76 5 4 5946 6018 298362853 298362927 3.130000e-13 87.9
54 TraesCS3D01G310500 chr5A 94.030 67 3 1 3092 3157 353601741 353601807 4.030000e-17 100.0
55 TraesCS3D01G310500 chr4D 93.939 66 2 2 3092 3155 503515983 503516048 1.450000e-16 99.0
56 TraesCS3D01G310500 chr2B 92.188 64 2 3 5946 6006 204264159 204264222 3.130000e-13 87.9
57 TraesCS3D01G310500 chr1A 86.842 76 7 3 5949 6021 583362092 583362017 1.460000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310500 chr3D 424656412 424662721 6309 True 5551.500000 9171 100.000000 1 6310 2 chr3D.!!$R1 6309
1 TraesCS3D01G310500 chr3A 564340409 564345697 5288 False 2562.666667 6857 92.364333 741 6310 3 chr3A.!!$F2 5569
2 TraesCS3D01G310500 chr3B 554697152 554702110 4958 True 2454.333333 3494 92.988333 539 5828 3 chr3B.!!$R2 5289
3 TraesCS3D01G310500 chr6D 469488815 469492991 4176 True 945.350000 2994 93.484250 2447 5049 4 chr6D.!!$R3 2602
4 TraesCS3D01G310500 chr6D 469507625 469512864 5239 True 770.983333 3271 88.072167 1439 5049 6 chr6D.!!$R4 3610
5 TraesCS3D01G310500 chr6D 457064485 457068346 3861 True 410.000000 728 91.421250 4880 6085 4 chr6D.!!$R2 1205
6 TraesCS3D01G310500 chr5D 547259839 547261144 1305 False 589.666667 787 92.494333 3741 6309 3 chr5D.!!$F1 2568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.034059 GGACAGTGACCAGTGGTGAG 59.966 60.000 22.50 8.89 35.25 3.51 F
325 326 0.036388 GTGATGCTTCAAGGGGACGA 60.036 55.000 3.51 0.00 32.48 4.20 F
499 500 0.037697 CCAGATGTGACCGACCGAAA 60.038 55.000 0.00 0.00 0.00 3.46 F
506 507 0.533308 TGACCGACCGAAAAACTGGG 60.533 55.000 0.00 0.00 0.00 4.45 F
507 508 0.533531 GACCGACCGAAAAACTGGGT 60.534 55.000 0.00 0.00 36.58 4.51 F
508 509 0.533531 ACCGACCGAAAAACTGGGTC 60.534 55.000 0.00 0.00 45.34 4.46 F
545 546 0.890683 CACTGCCCCATTCTGGAAAC 59.109 55.000 0.00 0.00 40.96 2.78 F
2302 2430 1.070134 TGCTTAGATACCCATGCCGAC 59.930 52.381 0.00 0.00 0.00 4.79 F
4582 4759 2.168496 GATACCGGGTGCTGCTAGATA 58.832 52.381 10.66 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1365 1.001181 CACCGGAACCGAGGAAGTTAA 59.999 52.381 9.46 0.00 42.83 2.01 R
2302 2430 1.135053 TCGCAAATGCATGAACATGGG 60.135 47.619 15.15 3.89 42.21 4.00 R
3482 3659 3.327464 TGTCAACAGGAATCACATCCAGA 59.673 43.478 0.00 0.00 42.27 3.86 R
3690 3867 3.381272 CAGAAGAACAAAGGGAGCAAACA 59.619 43.478 0.00 0.00 0.00 2.83 R
4299 4476 9.236006 GTGCTGTTTTGATATATCCTTCCATAT 57.764 33.333 10.25 0.00 0.00 1.78 R
4323 4500 1.003355 AAGTGGTCTGGCATCCGTG 60.003 57.895 0.00 0.00 0.00 4.94 R
4340 4517 5.376625 ACTACAGCACAGGAGAAATTTCAA 58.623 37.500 19.99 0.00 0.00 2.69 R
4913 6714 0.889994 GTGCTGCCATTGATCACCAA 59.110 50.000 0.00 0.00 39.41 3.67 R
6206 10738 0.238817 GTGCGCCCGAATTACAACAA 59.761 50.000 4.18 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.835467 GAAAAACTTTTAACCATGGAAAAAGC 57.165 30.769 33.20 22.56 41.67 3.51
26 27 8.574251 AAAAACTTTTAACCATGGAAAAAGCT 57.426 26.923 33.20 26.40 41.67 3.74
27 28 8.574251 AAAACTTTTAACCATGGAAAAAGCTT 57.426 26.923 33.20 28.76 41.67 3.74
28 29 7.786178 AACTTTTAACCATGGAAAAAGCTTC 57.214 32.000 33.20 0.00 41.67 3.86
29 30 6.883744 ACTTTTAACCATGGAAAAAGCTTCA 58.116 32.000 33.20 15.24 41.67 3.02
30 31 7.334858 ACTTTTAACCATGGAAAAAGCTTCAA 58.665 30.769 33.20 11.87 41.67 2.69
31 32 7.279981 ACTTTTAACCATGGAAAAAGCTTCAAC 59.720 33.333 33.20 0.00 41.67 3.18
32 33 3.751479 ACCATGGAAAAAGCTTCAACC 57.249 42.857 21.47 4.11 0.00 3.77
33 34 2.035832 ACCATGGAAAAAGCTTCAACCG 59.964 45.455 21.47 0.00 0.00 4.44
34 35 2.610232 CCATGGAAAAAGCTTCAACCGG 60.610 50.000 5.56 0.00 0.00 5.28
35 36 0.387565 TGGAAAAAGCTTCAACCGGC 59.612 50.000 0.00 0.00 0.00 6.13
36 37 0.387565 GGAAAAAGCTTCAACCGGCA 59.612 50.000 0.00 0.00 0.00 5.69
37 38 1.202475 GGAAAAAGCTTCAACCGGCAA 60.202 47.619 0.00 0.00 0.00 4.52
38 39 2.127251 GAAAAAGCTTCAACCGGCAAG 58.873 47.619 0.00 2.20 0.00 4.01
40 41 0.467290 AAAGCTTCAACCGGCAAGGA 60.467 50.000 0.00 0.00 45.00 3.36
41 42 0.467290 AAGCTTCAACCGGCAAGGAA 60.467 50.000 0.00 0.00 45.00 3.36
42 43 0.467290 AGCTTCAACCGGCAAGGAAA 60.467 50.000 0.00 0.00 45.00 3.13
43 44 0.387565 GCTTCAACCGGCAAGGAAAA 59.612 50.000 0.00 0.00 45.00 2.29
44 45 1.202475 GCTTCAACCGGCAAGGAAAAA 60.202 47.619 0.00 0.00 45.00 1.94
45 46 2.742774 CTTCAACCGGCAAGGAAAAAG 58.257 47.619 0.00 1.49 45.00 2.27
46 47 0.387565 TCAACCGGCAAGGAAAAAGC 59.612 50.000 0.00 0.00 45.00 3.51
47 48 0.389025 CAACCGGCAAGGAAAAAGCT 59.611 50.000 0.00 0.00 45.00 3.74
48 49 1.119684 AACCGGCAAGGAAAAAGCTT 58.880 45.000 0.00 0.00 45.00 3.74
49 50 0.673985 ACCGGCAAGGAAAAAGCTTC 59.326 50.000 0.00 0.00 45.00 3.86
50 51 0.673437 CCGGCAAGGAAAAAGCTTCA 59.327 50.000 0.00 0.00 45.00 3.02
51 52 1.068434 CCGGCAAGGAAAAAGCTTCAA 59.932 47.619 0.00 0.00 45.00 2.69
52 53 2.289010 CCGGCAAGGAAAAAGCTTCAAT 60.289 45.455 0.00 0.00 45.00 2.57
53 54 2.989166 CGGCAAGGAAAAAGCTTCAATC 59.011 45.455 0.00 0.00 0.00 2.67
54 55 2.989166 GGCAAGGAAAAAGCTTCAATCG 59.011 45.455 0.00 0.00 0.00 3.34
55 56 2.989166 GCAAGGAAAAAGCTTCAATCGG 59.011 45.455 0.00 0.00 0.00 4.18
56 57 2.989166 CAAGGAAAAAGCTTCAATCGGC 59.011 45.455 0.00 0.00 0.00 5.54
57 58 2.238521 AGGAAAAAGCTTCAATCGGCA 58.761 42.857 0.00 0.00 0.00 5.69
58 59 2.627699 AGGAAAAAGCTTCAATCGGCAA 59.372 40.909 0.00 0.00 0.00 4.52
59 60 2.989166 GGAAAAAGCTTCAATCGGCAAG 59.011 45.455 0.00 0.00 0.00 4.01
60 61 2.730550 AAAAGCTTCAATCGGCAAGG 57.269 45.000 0.00 0.00 0.00 3.61
61 62 1.909700 AAAGCTTCAATCGGCAAGGA 58.090 45.000 0.00 0.00 0.00 3.36
62 63 1.909700 AAGCTTCAATCGGCAAGGAA 58.090 45.000 0.00 0.00 0.00 3.36
63 64 1.909700 AGCTTCAATCGGCAAGGAAA 58.090 45.000 0.00 0.00 0.00 3.13
64 65 2.238521 AGCTTCAATCGGCAAGGAAAA 58.761 42.857 0.00 0.00 0.00 2.29
65 66 2.627699 AGCTTCAATCGGCAAGGAAAAA 59.372 40.909 0.00 0.00 0.00 1.94
81 82 0.881796 AAAAAGCTTCTACTGGGCGC 59.118 50.000 0.00 0.00 0.00 6.53
82 83 0.960861 AAAAGCTTCTACTGGGCGCC 60.961 55.000 21.18 21.18 0.00 6.53
83 84 3.665675 AAGCTTCTACTGGGCGCCG 62.666 63.158 22.54 10.51 0.00 6.46
84 85 4.143333 GCTTCTACTGGGCGCCGA 62.143 66.667 22.54 17.25 0.00 5.54
85 86 2.202756 CTTCTACTGGGCGCCGAC 60.203 66.667 22.54 8.26 0.00 4.79
86 87 2.992689 TTCTACTGGGCGCCGACA 60.993 61.111 22.54 13.18 0.00 4.35
87 88 2.298158 CTTCTACTGGGCGCCGACAT 62.298 60.000 22.54 8.10 0.00 3.06
88 89 2.572095 TTCTACTGGGCGCCGACATG 62.572 60.000 22.54 7.58 0.00 3.21
89 90 4.155733 TACTGGGCGCCGACATGG 62.156 66.667 22.54 7.16 42.50 3.66
97 98 3.398920 GCCGACATGGTGACGATG 58.601 61.111 6.02 6.02 37.72 3.84
98 99 2.173669 GCCGACATGGTGACGATGG 61.174 63.158 12.16 0.00 37.72 3.51
99 100 1.218047 CCGACATGGTGACGATGGT 59.782 57.895 12.16 0.00 37.72 3.55
100 101 1.083806 CCGACATGGTGACGATGGTG 61.084 60.000 12.16 3.82 37.72 4.17
101 102 0.389817 CGACATGGTGACGATGGTGT 60.390 55.000 12.16 0.00 37.72 4.16
102 103 1.078709 GACATGGTGACGATGGTGTG 58.921 55.000 12.16 0.00 0.00 3.82
103 104 0.684535 ACATGGTGACGATGGTGTGA 59.315 50.000 12.16 0.00 0.00 3.58
104 105 1.338105 ACATGGTGACGATGGTGTGAG 60.338 52.381 12.16 0.00 0.00 3.51
105 106 0.391661 ATGGTGACGATGGTGTGAGC 60.392 55.000 0.00 0.00 0.00 4.26
106 107 2.094659 GGTGACGATGGTGTGAGCG 61.095 63.158 0.00 0.00 0.00 5.03
107 108 2.094659 GTGACGATGGTGTGAGCGG 61.095 63.158 0.00 0.00 0.00 5.52
108 109 3.188786 GACGATGGTGTGAGCGGC 61.189 66.667 0.00 0.00 0.00 6.53
109 110 3.932580 GACGATGGTGTGAGCGGCA 62.933 63.158 1.45 0.00 31.40 5.69
110 111 2.741985 CGATGGTGTGAGCGGCAA 60.742 61.111 1.45 0.00 0.00 4.52
111 112 2.870372 GATGGTGTGAGCGGCAAC 59.130 61.111 1.45 0.25 0.00 4.17
112 113 1.965930 GATGGTGTGAGCGGCAACA 60.966 57.895 1.45 3.33 37.99 3.33
113 114 2.187599 GATGGTGTGAGCGGCAACAC 62.188 60.000 23.09 23.09 36.28 3.32
114 115 3.660111 GGTGTGAGCGGCAACACC 61.660 66.667 29.96 29.96 39.62 4.16
145 146 4.830765 GACGGCATGGCGGTGCTA 62.831 66.667 39.57 0.00 41.92 3.49
146 147 4.175337 ACGGCATGGCGGTGCTAT 62.175 61.111 39.57 19.40 44.45 2.97
151 152 4.806936 ATGGCGGTGCTATGATGG 57.193 55.556 0.00 0.00 0.00 3.51
152 153 1.601759 ATGGCGGTGCTATGATGGC 60.602 57.895 0.00 0.00 0.00 4.40
153 154 3.349006 GGCGGTGCTATGATGGCG 61.349 66.667 0.00 0.00 0.00 5.69
154 155 3.349006 GCGGTGCTATGATGGCGG 61.349 66.667 0.00 0.00 0.00 6.13
155 156 2.108976 CGGTGCTATGATGGCGGT 59.891 61.111 0.00 0.00 0.00 5.68
156 157 2.246739 CGGTGCTATGATGGCGGTG 61.247 63.158 0.00 0.00 0.00 4.94
157 158 1.893808 GGTGCTATGATGGCGGTGG 60.894 63.158 0.00 0.00 0.00 4.61
158 159 2.203195 TGCTATGATGGCGGTGGC 60.203 61.111 0.00 0.00 38.90 5.01
159 160 2.111878 GCTATGATGGCGGTGGCT 59.888 61.111 0.00 0.00 39.81 4.75
160 161 1.371183 GCTATGATGGCGGTGGCTA 59.629 57.895 0.00 0.00 39.81 3.93
161 162 0.250295 GCTATGATGGCGGTGGCTAA 60.250 55.000 0.00 0.00 39.81 3.09
162 163 1.611673 GCTATGATGGCGGTGGCTAAT 60.612 52.381 0.00 0.00 39.81 1.73
163 164 2.783135 CTATGATGGCGGTGGCTAATT 58.217 47.619 0.00 0.00 39.81 1.40
164 165 1.321474 ATGATGGCGGTGGCTAATTG 58.679 50.000 0.00 0.00 39.81 2.32
165 166 0.034574 TGATGGCGGTGGCTAATTGT 60.035 50.000 0.00 0.00 39.81 2.71
166 167 1.102978 GATGGCGGTGGCTAATTGTT 58.897 50.000 0.00 0.00 39.81 2.83
167 168 0.817013 ATGGCGGTGGCTAATTGTTG 59.183 50.000 0.00 0.00 39.81 3.33
168 169 0.538516 TGGCGGTGGCTAATTGTTGT 60.539 50.000 0.00 0.00 39.81 3.32
169 170 1.271434 TGGCGGTGGCTAATTGTTGTA 60.271 47.619 0.00 0.00 39.81 2.41
170 171 1.813786 GGCGGTGGCTAATTGTTGTAA 59.186 47.619 0.00 0.00 39.81 2.41
171 172 2.414957 GGCGGTGGCTAATTGTTGTAAC 60.415 50.000 0.00 0.00 39.81 2.50
172 173 2.226912 GCGGTGGCTAATTGTTGTAACA 59.773 45.455 0.00 0.00 34.83 2.41
173 174 3.304794 GCGGTGGCTAATTGTTGTAACAA 60.305 43.478 12.07 12.07 43.64 2.83
174 175 5.369874 GCGGTGGCTAATTGTTGTAACAAC 61.370 45.833 11.94 8.12 42.94 3.32
183 184 4.619437 TTGTTGTAACAACGAAAGGGTC 57.381 40.909 6.22 0.00 43.45 4.46
184 185 2.608546 TGTTGTAACAACGAAAGGGTCG 59.391 45.455 0.19 0.00 44.14 4.79
185 186 4.536005 TGTTGTAACAACGAAAGGGTCGG 61.536 47.826 0.19 0.00 43.42 4.79
191 192 3.497879 CGAAAGGGTCGGGCATTC 58.502 61.111 0.00 0.00 46.45 2.67
192 193 2.461110 CGAAAGGGTCGGGCATTCG 61.461 63.158 0.00 0.00 46.45 3.34
193 194 1.078708 GAAAGGGTCGGGCATTCGA 60.079 57.895 0.00 0.00 36.76 3.71
194 195 0.463833 GAAAGGGTCGGGCATTCGAT 60.464 55.000 0.00 0.00 41.40 3.59
195 196 0.748005 AAAGGGTCGGGCATTCGATG 60.748 55.000 0.00 0.00 41.40 3.84
196 197 1.910580 AAGGGTCGGGCATTCGATGT 61.911 55.000 0.00 0.00 41.40 3.06
197 198 1.451387 GGGTCGGGCATTCGATGTT 60.451 57.895 0.00 0.00 41.40 2.71
198 199 1.714899 GGGTCGGGCATTCGATGTTG 61.715 60.000 0.00 0.00 41.40 3.33
199 200 1.062525 GTCGGGCATTCGATGTTGC 59.937 57.895 6.90 6.90 41.40 4.17
200 201 1.078497 TCGGGCATTCGATGTTGCT 60.078 52.632 13.17 0.00 38.88 3.91
201 202 0.176910 TCGGGCATTCGATGTTGCTA 59.823 50.000 13.17 0.76 38.88 3.49
202 203 0.304705 CGGGCATTCGATGTTGCTAC 59.695 55.000 13.17 0.00 38.88 3.58
203 204 1.378531 GGGCATTCGATGTTGCTACA 58.621 50.000 2.82 2.82 38.88 2.74
204 205 1.331756 GGGCATTCGATGTTGCTACAG 59.668 52.381 7.16 0.00 37.77 2.74
205 206 2.279741 GGCATTCGATGTTGCTACAGA 58.720 47.619 7.16 0.00 37.77 3.41
206 207 2.677836 GGCATTCGATGTTGCTACAGAA 59.322 45.455 7.16 6.31 37.77 3.02
207 208 3.485877 GGCATTCGATGTTGCTACAGAAC 60.486 47.826 7.16 0.69 37.77 3.01
208 209 3.782250 GCATTCGATGTTGCTACAGAACG 60.782 47.826 7.16 11.84 37.77 3.95
209 210 3.291809 TTCGATGTTGCTACAGAACGA 57.708 42.857 17.69 17.69 37.77 3.85
210 211 2.592194 TCGATGTTGCTACAGAACGAC 58.408 47.619 17.69 2.82 37.77 4.34
211 212 1.317611 CGATGTTGCTACAGAACGACG 59.682 52.381 15.42 0.00 37.77 5.12
212 213 2.592194 GATGTTGCTACAGAACGACGA 58.408 47.619 7.16 0.00 37.77 4.20
213 214 1.762419 TGTTGCTACAGAACGACGAC 58.238 50.000 0.00 0.00 0.00 4.34
214 215 1.065851 TGTTGCTACAGAACGACGACA 59.934 47.619 0.00 0.00 0.00 4.35
215 216 2.287970 TGTTGCTACAGAACGACGACAT 60.288 45.455 0.00 0.00 0.00 3.06
216 217 1.977188 TGCTACAGAACGACGACATG 58.023 50.000 0.00 0.00 0.00 3.21
217 218 1.269166 GCTACAGAACGACGACATGG 58.731 55.000 0.00 0.00 0.00 3.66
218 219 1.402456 GCTACAGAACGACGACATGGT 60.402 52.381 0.00 0.00 0.00 3.55
219 220 2.251040 CTACAGAACGACGACATGGTG 58.749 52.381 0.00 0.00 0.00 4.17
220 221 0.944311 ACAGAACGACGACATGGTGC 60.944 55.000 0.00 0.00 0.00 5.01
221 222 0.667487 CAGAACGACGACATGGTGCT 60.667 55.000 0.00 0.00 0.00 4.40
222 223 0.667487 AGAACGACGACATGGTGCTG 60.667 55.000 0.00 0.00 0.00 4.41
223 224 2.227968 GAACGACGACATGGTGCTGC 62.228 60.000 0.00 0.00 0.00 5.25
224 225 3.842126 CGACGACATGGTGCTGCG 61.842 66.667 0.00 0.00 0.00 5.18
225 226 2.432456 GACGACATGGTGCTGCGA 60.432 61.111 0.00 0.00 0.00 5.10
226 227 2.730672 GACGACATGGTGCTGCGAC 61.731 63.158 0.00 0.00 0.00 5.19
227 228 3.842126 CGACATGGTGCTGCGACG 61.842 66.667 0.00 0.00 0.00 5.12
228 229 2.432456 GACATGGTGCTGCGACGA 60.432 61.111 0.00 0.00 0.00 4.20
229 230 2.433145 ACATGGTGCTGCGACGAG 60.433 61.111 0.00 0.00 0.00 4.18
230 231 3.190849 CATGGTGCTGCGACGAGG 61.191 66.667 0.00 0.00 0.00 4.63
231 232 3.695606 ATGGTGCTGCGACGAGGT 61.696 61.111 0.00 0.00 0.00 3.85
232 233 3.649277 ATGGTGCTGCGACGAGGTC 62.649 63.158 0.00 0.00 0.00 3.85
234 235 4.057428 GTGCTGCGACGAGGTCCT 62.057 66.667 0.00 0.00 0.00 3.85
235 236 4.056125 TGCTGCGACGAGGTCCTG 62.056 66.667 0.00 0.00 0.00 3.86
237 238 3.753434 CTGCGACGAGGTCCTGCT 61.753 66.667 0.00 0.00 0.00 4.24
238 239 2.360726 TGCGACGAGGTCCTGCTA 60.361 61.111 0.00 0.00 0.00 3.49
239 240 2.329678 CTGCGACGAGGTCCTGCTAG 62.330 65.000 0.00 0.00 0.00 3.42
240 241 2.113433 GCGACGAGGTCCTGCTAGA 61.113 63.158 0.00 0.00 0.00 2.43
241 242 1.654954 GCGACGAGGTCCTGCTAGAA 61.655 60.000 0.00 0.00 0.00 2.10
242 243 0.099082 CGACGAGGTCCTGCTAGAAC 59.901 60.000 0.00 0.00 0.00 3.01
243 244 0.456628 GACGAGGTCCTGCTAGAACC 59.543 60.000 0.00 0.00 0.00 3.62
244 245 1.313812 ACGAGGTCCTGCTAGAACCG 61.314 60.000 0.00 0.00 38.14 4.44
245 246 1.817209 GAGGTCCTGCTAGAACCGG 59.183 63.158 0.00 0.00 38.14 5.28
246 247 2.187163 GGTCCTGCTAGAACCGGC 59.813 66.667 0.00 0.00 0.00 6.13
247 248 2.202756 GTCCTGCTAGAACCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
248 249 2.361992 TCCTGCTAGAACCGGCGA 60.362 61.111 9.30 0.00 0.00 5.54
249 250 2.105128 CCTGCTAGAACCGGCGAG 59.895 66.667 9.30 0.06 0.00 5.03
250 251 2.583593 CTGCTAGAACCGGCGAGC 60.584 66.667 9.30 9.87 37.09 5.03
251 252 3.356639 CTGCTAGAACCGGCGAGCA 62.357 63.158 17.51 17.51 42.84 4.26
252 253 2.886124 GCTAGAACCGGCGAGCAC 60.886 66.667 9.30 0.00 36.65 4.40
253 254 2.579787 CTAGAACCGGCGAGCACG 60.580 66.667 9.30 0.00 42.93 5.34
254 255 3.047718 CTAGAACCGGCGAGCACGA 62.048 63.158 9.30 0.00 42.66 4.35
255 256 2.537792 CTAGAACCGGCGAGCACGAA 62.538 60.000 9.30 0.00 42.66 3.85
256 257 1.940883 TAGAACCGGCGAGCACGAAT 61.941 55.000 9.30 0.00 42.66 3.34
257 258 3.083600 GAACCGGCGAGCACGAATG 62.084 63.158 9.30 0.00 42.66 2.67
267 268 3.084579 CACGAATGCTGCGAGGAC 58.915 61.111 0.00 0.00 0.00 3.85
268 269 2.507102 ACGAATGCTGCGAGGACG 60.507 61.111 0.00 0.00 42.93 4.79
269 270 2.202610 CGAATGCTGCGAGGACGA 60.203 61.111 0.00 0.00 42.66 4.20
270 271 2.508891 CGAATGCTGCGAGGACGAC 61.509 63.158 0.00 0.00 42.66 4.34
271 272 1.153745 GAATGCTGCGAGGACGACT 60.154 57.895 0.00 0.00 42.66 4.18
272 273 0.100682 GAATGCTGCGAGGACGACTA 59.899 55.000 0.00 0.00 42.66 2.59
273 274 0.179134 AATGCTGCGAGGACGACTAC 60.179 55.000 0.00 0.00 42.66 2.73
274 275 2.005960 ATGCTGCGAGGACGACTACC 62.006 60.000 0.00 0.00 42.66 3.18
275 276 2.403987 CTGCGAGGACGACTACCG 59.596 66.667 0.00 0.00 42.66 4.02
276 277 3.109612 CTGCGAGGACGACTACCGG 62.110 68.421 0.00 0.00 43.93 5.28
295 296 4.394712 GGCGGGGACAGTGACCAG 62.395 72.222 13.71 8.83 0.00 4.00
296 297 3.626924 GCGGGGACAGTGACCAGT 61.627 66.667 13.71 0.00 0.00 4.00
297 298 2.343758 CGGGGACAGTGACCAGTG 59.656 66.667 13.71 3.46 37.75 3.66
298 299 2.750350 GGGGACAGTGACCAGTGG 59.250 66.667 13.71 7.91 36.10 4.00
299 300 2.147387 GGGGACAGTGACCAGTGGT 61.147 63.158 16.70 16.70 39.44 4.16
300 301 1.071471 GGGACAGTGACCAGTGGTG 59.929 63.158 22.50 7.86 35.25 4.17
301 302 1.407656 GGGACAGTGACCAGTGGTGA 61.408 60.000 22.50 9.02 35.25 4.02
302 303 0.034059 GGACAGTGACCAGTGGTGAG 59.966 60.000 22.50 8.89 35.25 3.51
303 304 0.601311 GACAGTGACCAGTGGTGAGC 60.601 60.000 22.50 9.38 35.25 4.26
304 305 1.050988 ACAGTGACCAGTGGTGAGCT 61.051 55.000 22.50 11.67 35.25 4.09
305 306 0.602106 CAGTGACCAGTGGTGAGCTG 60.602 60.000 22.50 19.31 35.25 4.24
309 310 3.150949 CCAGTGGTGAGCTGGTGA 58.849 61.111 0.00 0.00 46.22 4.02
310 311 1.681666 CCAGTGGTGAGCTGGTGAT 59.318 57.895 0.00 0.00 46.22 3.06
311 312 0.675837 CCAGTGGTGAGCTGGTGATG 60.676 60.000 0.00 0.00 46.22 3.07
312 313 1.002868 AGTGGTGAGCTGGTGATGC 60.003 57.895 0.00 0.00 0.00 3.91
313 314 1.002868 GTGGTGAGCTGGTGATGCT 60.003 57.895 0.00 0.00 44.24 3.79
314 315 0.607489 GTGGTGAGCTGGTGATGCTT 60.607 55.000 0.00 0.00 41.30 3.91
315 316 0.321919 TGGTGAGCTGGTGATGCTTC 60.322 55.000 0.00 0.00 41.30 3.86
316 317 0.321919 GGTGAGCTGGTGATGCTTCA 60.322 55.000 0.00 0.00 41.30 3.02
317 318 1.527034 GTGAGCTGGTGATGCTTCAA 58.473 50.000 3.51 0.00 41.30 2.69
318 319 1.467734 GTGAGCTGGTGATGCTTCAAG 59.532 52.381 3.51 0.58 41.30 3.02
319 320 1.093159 GAGCTGGTGATGCTTCAAGG 58.907 55.000 3.51 0.00 41.30 3.61
320 321 0.323178 AGCTGGTGATGCTTCAAGGG 60.323 55.000 3.51 0.00 37.52 3.95
321 322 1.318158 GCTGGTGATGCTTCAAGGGG 61.318 60.000 3.51 0.00 32.48 4.79
322 323 0.329261 CTGGTGATGCTTCAAGGGGA 59.671 55.000 3.51 0.00 32.48 4.81
323 324 0.038166 TGGTGATGCTTCAAGGGGAC 59.962 55.000 3.51 0.00 32.48 4.46
324 325 1.026718 GGTGATGCTTCAAGGGGACG 61.027 60.000 3.51 0.00 32.48 4.79
325 326 0.036388 GTGATGCTTCAAGGGGACGA 60.036 55.000 3.51 0.00 32.48 4.20
326 327 0.036388 TGATGCTTCAAGGGGACGAC 60.036 55.000 0.00 0.00 0.00 4.34
327 328 1.079127 ATGCTTCAAGGGGACGACG 60.079 57.895 0.00 0.00 0.00 5.12
328 329 1.541310 ATGCTTCAAGGGGACGACGA 61.541 55.000 0.00 0.00 0.00 4.20
329 330 1.737008 GCTTCAAGGGGACGACGAC 60.737 63.158 0.00 0.00 0.00 4.34
330 331 1.080025 CTTCAAGGGGACGACGACC 60.080 63.158 7.89 7.89 0.00 4.79
331 332 2.814183 CTTCAAGGGGACGACGACCG 62.814 65.000 10.18 0.00 45.44 4.79
332 333 4.430765 CAAGGGGACGACGACCGG 62.431 72.222 10.18 0.00 43.93 5.28
362 363 4.778143 CGGGGGCTTCAAGGTCCG 62.778 72.222 0.00 0.00 0.00 4.79
363 364 4.426313 GGGGGCTTCAAGGTCCGG 62.426 72.222 0.00 0.00 0.00 5.14
382 383 4.538283 CTCGAGCGTCGCCGATGT 62.538 66.667 24.11 3.59 40.21 3.06
383 384 4.531912 TCGAGCGTCGCCGATGTC 62.532 66.667 21.44 9.47 40.21 3.06
385 386 4.492160 GAGCGTCGCCGATGTCCA 62.492 66.667 14.86 0.00 35.63 4.02
386 387 4.498520 AGCGTCGCCGATGTCCAG 62.499 66.667 14.86 0.00 35.63 3.86
387 388 4.796231 GCGTCGCCGATGTCCAGT 62.796 66.667 5.75 0.00 35.63 4.00
388 389 2.880879 CGTCGCCGATGTCCAGTG 60.881 66.667 0.00 0.00 35.63 3.66
389 390 2.509336 GTCGCCGATGTCCAGTGG 60.509 66.667 1.40 1.40 0.00 4.00
390 391 2.994995 TCGCCGATGTCCAGTGGT 60.995 61.111 9.54 0.00 0.00 4.16
391 392 1.679641 TCGCCGATGTCCAGTGGTA 60.680 57.895 9.54 0.00 0.00 3.25
392 393 1.518572 CGCCGATGTCCAGTGGTAC 60.519 63.158 9.54 6.92 0.00 3.34
393 394 1.898154 GCCGATGTCCAGTGGTACT 59.102 57.895 9.54 0.00 0.00 2.73
394 395 0.460284 GCCGATGTCCAGTGGTACTG 60.460 60.000 9.54 2.05 45.53 2.74
395 396 0.895530 CCGATGTCCAGTGGTACTGT 59.104 55.000 9.54 0.28 44.50 3.55
396 397 1.275291 CCGATGTCCAGTGGTACTGTT 59.725 52.381 9.54 0.00 44.50 3.16
397 398 2.289444 CCGATGTCCAGTGGTACTGTTT 60.289 50.000 9.54 0.00 44.50 2.83
398 399 3.399330 CGATGTCCAGTGGTACTGTTTT 58.601 45.455 9.54 0.00 44.50 2.43
399 400 3.186409 CGATGTCCAGTGGTACTGTTTTG 59.814 47.826 9.54 0.00 44.50 2.44
400 401 2.925724 TGTCCAGTGGTACTGTTTTGG 58.074 47.619 9.54 0.00 44.50 3.28
401 402 2.506231 TGTCCAGTGGTACTGTTTTGGA 59.494 45.455 9.54 0.00 44.50 3.53
402 403 3.137544 TGTCCAGTGGTACTGTTTTGGAT 59.862 43.478 9.54 0.00 44.50 3.41
403 404 4.142038 GTCCAGTGGTACTGTTTTGGATT 58.858 43.478 9.54 0.00 44.50 3.01
404 405 4.023193 GTCCAGTGGTACTGTTTTGGATTG 60.023 45.833 9.54 0.00 44.50 2.67
405 406 3.255642 CCAGTGGTACTGTTTTGGATTGG 59.744 47.826 0.00 0.00 44.50 3.16
406 407 4.141287 CAGTGGTACTGTTTTGGATTGGA 58.859 43.478 0.90 0.00 41.19 3.53
407 408 4.766891 CAGTGGTACTGTTTTGGATTGGAT 59.233 41.667 0.90 0.00 41.19 3.41
408 409 4.766891 AGTGGTACTGTTTTGGATTGGATG 59.233 41.667 0.00 0.00 0.00 3.51
409 410 3.509575 TGGTACTGTTTTGGATTGGATGC 59.490 43.478 0.00 0.00 0.00 3.91
410 411 3.119137 GGTACTGTTTTGGATTGGATGCC 60.119 47.826 0.00 0.00 0.00 4.40
411 412 1.545582 ACTGTTTTGGATTGGATGCCG 59.454 47.619 0.00 0.00 0.00 5.69
412 413 1.545582 CTGTTTTGGATTGGATGCCGT 59.454 47.619 0.00 0.00 0.00 5.68
413 414 1.967066 TGTTTTGGATTGGATGCCGTT 59.033 42.857 0.00 0.00 0.00 4.44
414 415 2.366916 TGTTTTGGATTGGATGCCGTTT 59.633 40.909 0.00 0.00 0.00 3.60
415 416 3.181461 TGTTTTGGATTGGATGCCGTTTT 60.181 39.130 0.00 0.00 0.00 2.43
416 417 2.739885 TTGGATTGGATGCCGTTTTG 57.260 45.000 0.00 0.00 0.00 2.44
417 418 1.626686 TGGATTGGATGCCGTTTTGT 58.373 45.000 0.00 0.00 0.00 2.83
418 419 1.967066 TGGATTGGATGCCGTTTTGTT 59.033 42.857 0.00 0.00 0.00 2.83
419 420 2.366916 TGGATTGGATGCCGTTTTGTTT 59.633 40.909 0.00 0.00 0.00 2.83
420 421 3.574396 TGGATTGGATGCCGTTTTGTTTA 59.426 39.130 0.00 0.00 0.00 2.01
421 422 4.039245 TGGATTGGATGCCGTTTTGTTTAA 59.961 37.500 0.00 0.00 0.00 1.52
422 423 4.625311 GGATTGGATGCCGTTTTGTTTAAG 59.375 41.667 0.00 0.00 0.00 1.85
423 424 4.920640 TTGGATGCCGTTTTGTTTAAGA 57.079 36.364 0.00 0.00 0.00 2.10
424 425 4.920640 TGGATGCCGTTTTGTTTAAGAA 57.079 36.364 0.00 0.00 0.00 2.52
425 426 5.263968 TGGATGCCGTTTTGTTTAAGAAA 57.736 34.783 0.00 0.00 0.00 2.52
426 427 5.661458 TGGATGCCGTTTTGTTTAAGAAAA 58.339 33.333 0.00 0.00 0.00 2.29
427 428 6.106673 TGGATGCCGTTTTGTTTAAGAAAAA 58.893 32.000 1.59 0.00 0.00 1.94
446 447 2.845363 AAAAAGATGCAAAGGGCCAG 57.155 45.000 6.18 0.00 43.89 4.85
447 448 2.014010 AAAAGATGCAAAGGGCCAGA 57.986 45.000 6.18 0.00 43.89 3.86
448 449 2.242882 AAAGATGCAAAGGGCCAGAT 57.757 45.000 6.18 0.00 43.89 2.90
449 450 1.772836 AAGATGCAAAGGGCCAGATC 58.227 50.000 6.18 0.00 43.89 2.75
450 451 0.924823 AGATGCAAAGGGCCAGATCT 59.075 50.000 6.18 1.55 43.89 2.75
451 452 1.030457 GATGCAAAGGGCCAGATCTG 58.970 55.000 16.24 16.24 43.89 2.90
452 453 0.627451 ATGCAAAGGGCCAGATCTGA 59.373 50.000 24.62 0.52 43.89 3.27
453 454 0.322816 TGCAAAGGGCCAGATCTGAC 60.323 55.000 24.62 12.91 43.89 3.51
454 455 1.372087 GCAAAGGGCCAGATCTGACG 61.372 60.000 24.62 9.41 36.11 4.35
455 456 0.250234 CAAAGGGCCAGATCTGACGA 59.750 55.000 24.62 0.00 0.00 4.20
456 457 1.134280 CAAAGGGCCAGATCTGACGAT 60.134 52.381 24.62 1.32 0.00 3.73
457 458 0.467384 AAGGGCCAGATCTGACGATG 59.533 55.000 24.62 7.90 0.00 3.84
458 459 1.070445 GGGCCAGATCTGACGATGG 59.930 63.158 24.62 8.19 0.00 3.51
459 460 1.070445 GGCCAGATCTGACGATGGG 59.930 63.158 24.62 6.46 0.00 4.00
460 461 1.690219 GGCCAGATCTGACGATGGGT 61.690 60.000 24.62 0.00 0.00 4.51
461 462 1.040646 GCCAGATCTGACGATGGGTA 58.959 55.000 24.62 0.00 0.00 3.69
462 463 1.412710 GCCAGATCTGACGATGGGTAA 59.587 52.381 24.62 0.00 0.00 2.85
463 464 2.803492 GCCAGATCTGACGATGGGTAAC 60.803 54.545 24.62 0.00 0.00 2.50
464 465 2.430694 CCAGATCTGACGATGGGTAACA 59.569 50.000 24.62 0.00 39.74 2.41
465 466 3.118775 CCAGATCTGACGATGGGTAACAA 60.119 47.826 24.62 0.00 39.74 2.83
466 467 3.865745 CAGATCTGACGATGGGTAACAAC 59.134 47.826 18.34 0.00 39.74 3.32
467 468 3.513912 AGATCTGACGATGGGTAACAACA 59.486 43.478 0.00 0.00 39.74 3.33
468 469 3.313012 TCTGACGATGGGTAACAACAG 57.687 47.619 0.00 0.00 39.74 3.16
469 470 2.894765 TCTGACGATGGGTAACAACAGA 59.105 45.455 0.00 0.00 39.74 3.41
470 471 3.322541 TCTGACGATGGGTAACAACAGAA 59.677 43.478 0.00 0.00 39.74 3.02
471 472 4.020573 TCTGACGATGGGTAACAACAGAAT 60.021 41.667 0.00 0.00 39.74 2.40
472 473 4.250464 TGACGATGGGTAACAACAGAATC 58.750 43.478 0.00 0.00 39.74 2.52
473 474 4.020573 TGACGATGGGTAACAACAGAATCT 60.021 41.667 0.00 0.00 39.74 2.40
474 475 4.253685 ACGATGGGTAACAACAGAATCTG 58.746 43.478 8.98 8.98 36.24 2.90
475 476 4.020573 ACGATGGGTAACAACAGAATCTGA 60.021 41.667 18.20 0.00 34.66 3.27
476 477 4.330074 CGATGGGTAACAACAGAATCTGAC 59.670 45.833 18.20 3.85 34.66 3.51
477 478 3.659786 TGGGTAACAACAGAATCTGACG 58.340 45.455 18.20 9.48 34.66 4.35
478 479 2.415512 GGGTAACAACAGAATCTGACGC 59.584 50.000 18.20 8.64 34.66 5.19
479 480 3.064207 GGTAACAACAGAATCTGACGCA 58.936 45.455 18.20 0.00 35.18 5.24
480 481 3.120649 GGTAACAACAGAATCTGACGCAC 60.121 47.826 18.20 7.58 35.18 5.34
481 482 1.512926 ACAACAGAATCTGACGCACC 58.487 50.000 18.20 0.00 35.18 5.01
482 483 1.202639 ACAACAGAATCTGACGCACCA 60.203 47.619 18.20 0.00 35.18 4.17
483 484 1.462283 CAACAGAATCTGACGCACCAG 59.538 52.381 18.20 0.00 35.18 4.00
484 485 0.969149 ACAGAATCTGACGCACCAGA 59.031 50.000 18.20 7.39 46.02 3.86
496 497 2.970639 ACCAGATGTGACCGACCG 59.029 61.111 0.00 0.00 0.00 4.79
497 498 1.605451 ACCAGATGTGACCGACCGA 60.605 57.895 0.00 0.00 0.00 4.69
498 499 1.183030 ACCAGATGTGACCGACCGAA 61.183 55.000 0.00 0.00 0.00 4.30
499 500 0.037697 CCAGATGTGACCGACCGAAA 60.038 55.000 0.00 0.00 0.00 3.46
500 501 1.606994 CCAGATGTGACCGACCGAAAA 60.607 52.381 0.00 0.00 0.00 2.29
501 502 2.139917 CAGATGTGACCGACCGAAAAA 58.860 47.619 0.00 0.00 0.00 1.94
502 503 2.096417 CAGATGTGACCGACCGAAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
503 504 2.140717 GATGTGACCGACCGAAAAACT 58.859 47.619 0.00 0.00 0.00 2.66
504 505 1.292061 TGTGACCGACCGAAAAACTG 58.708 50.000 0.00 0.00 0.00 3.16
505 506 0.584876 GTGACCGACCGAAAAACTGG 59.415 55.000 0.00 0.00 0.00 4.00
506 507 0.533308 TGACCGACCGAAAAACTGGG 60.533 55.000 0.00 0.00 0.00 4.45
507 508 0.533531 GACCGACCGAAAAACTGGGT 60.534 55.000 0.00 0.00 36.58 4.51
508 509 0.533531 ACCGACCGAAAAACTGGGTC 60.534 55.000 0.00 0.00 45.34 4.46
511 512 2.951458 CCGAAAAACTGGGTCGGC 59.049 61.111 0.00 0.00 46.91 5.54
512 513 2.554272 CGAAAAACTGGGTCGGCG 59.446 61.111 0.00 0.00 0.00 6.46
513 514 2.254350 GAAAAACTGGGTCGGCGC 59.746 61.111 0.00 0.00 0.00 6.53
514 515 3.588891 GAAAAACTGGGTCGGCGCG 62.589 63.158 0.00 0.00 0.00 6.86
515 516 4.922026 AAAACTGGGTCGGCGCGT 62.922 61.111 8.43 0.00 0.00 6.01
516 517 4.922026 AAACTGGGTCGGCGCGTT 62.922 61.111 8.43 4.10 0.00 4.84
517 518 2.992607 AAAACTGGGTCGGCGCGTTA 62.993 55.000 8.43 0.00 0.00 3.18
518 519 3.927163 AACTGGGTCGGCGCGTTAG 62.927 63.158 8.43 0.40 0.00 2.34
545 546 0.890683 CACTGCCCCATTCTGGAAAC 59.109 55.000 0.00 0.00 40.96 2.78
617 619 2.658807 AAGTCTGGTTTCAAGTCCCC 57.341 50.000 0.00 0.00 0.00 4.81
638 646 5.183140 CCCCCTATTTTAAGCATTGTATCGG 59.817 44.000 0.00 0.00 0.00 4.18
644 652 1.745232 AAGCATTGTATCGGCGGAAA 58.255 45.000 7.21 0.00 0.00 3.13
645 653 1.967319 AGCATTGTATCGGCGGAAAT 58.033 45.000 7.21 0.00 0.00 2.17
651 659 4.768130 TTGTATCGGCGGAAATTTCAAA 57.232 36.364 19.49 0.77 0.00 2.69
657 665 7.813148 TGTATCGGCGGAAATTTCAAATTTTTA 59.187 29.630 19.49 1.11 0.00 1.52
658 666 7.841915 ATCGGCGGAAATTTCAAATTTTTAT 57.158 28.000 19.49 0.65 0.00 1.40
659 667 7.054855 TCGGCGGAAATTTCAAATTTTTATG 57.945 32.000 19.49 2.21 0.00 1.90
660 668 6.868864 TCGGCGGAAATTTCAAATTTTTATGA 59.131 30.769 19.49 2.83 0.00 2.15
661 669 7.062839 TCGGCGGAAATTTCAAATTTTTATGAG 59.937 33.333 19.49 1.72 0.00 2.90
678 687 9.619316 TTTTTATGAGTAAATGAATGAACGGTG 57.381 29.630 0.00 0.00 30.34 4.94
679 688 8.554835 TTTATGAGTAAATGAATGAACGGTGA 57.445 30.769 0.00 0.00 0.00 4.02
683 692 7.881142 TGAGTAAATGAATGAACGGTGATTTT 58.119 30.769 0.00 0.00 0.00 1.82
810 823 4.875578 TCTCTAGTCCTACTAGGGCAAA 57.124 45.455 9.46 0.00 46.44 3.68
815 828 4.717279 AGTCCTACTAGGGCAAAAACAA 57.283 40.909 9.46 0.00 44.17 2.83
824 837 2.434336 AGGGCAAAAACAAAAGTCCTCC 59.566 45.455 0.00 0.00 27.71 4.30
851 864 3.636231 TCACCACGGGCCCTGAAG 61.636 66.667 22.43 6.52 0.00 3.02
856 869 3.011517 ACGGGCCCTGAAGAGCAT 61.012 61.111 22.43 0.00 0.00 3.79
1367 1381 2.991866 CTCGTTTAACTTCCTCGGTTCC 59.008 50.000 0.00 0.00 0.00 3.62
1406 1420 2.012937 TCGCGAATCCGTTTGGTATT 57.987 45.000 6.20 0.00 38.24 1.89
1413 1427 4.024893 CGAATCCGTTTGGTATTGGAGATG 60.025 45.833 0.00 0.00 36.30 2.90
1622 1715 3.202829 TGAGGTTGTTGTGGTAGGAAC 57.797 47.619 0.00 0.00 0.00 3.62
1623 1716 2.506231 TGAGGTTGTTGTGGTAGGAACA 59.494 45.455 0.00 0.00 0.00 3.18
1709 1806 1.873698 TGCGTGGGTTTCTAGTGAAC 58.126 50.000 0.00 0.00 31.02 3.18
1782 1884 2.202932 CGCTCTGCTTGGCGGTAT 60.203 61.111 9.20 0.00 46.42 2.73
1807 1913 2.169352 GCATAGGGAGCTTTCTGAGTGA 59.831 50.000 0.00 0.00 0.00 3.41
1871 1977 6.688385 CAGTTTAGTGTTCAACAACATGAGTG 59.312 38.462 0.00 0.00 44.47 3.51
1938 2044 7.345653 TCTGGTATTCTGTCAATGGAGACTTAT 59.654 37.037 0.00 0.00 39.27 1.73
1940 2046 8.642432 TGGTATTCTGTCAATGGAGACTTATAG 58.358 37.037 0.00 0.00 39.27 1.31
1941 2047 8.861086 GGTATTCTGTCAATGGAGACTTATAGA 58.139 37.037 0.00 0.00 39.27 1.98
1942 2048 9.906660 GTATTCTGTCAATGGAGACTTATAGAG 57.093 37.037 0.00 0.00 39.27 2.43
1943 2049 7.962995 TTCTGTCAATGGAGACTTATAGAGT 57.037 36.000 0.00 0.00 42.70 3.24
1944 2050 7.340122 TCTGTCAATGGAGACTTATAGAGTG 57.660 40.000 0.00 0.00 39.19 3.51
1945 2051 5.907207 TGTCAATGGAGACTTATAGAGTGC 58.093 41.667 0.00 0.00 39.19 4.40
1946 2052 5.658634 TGTCAATGGAGACTTATAGAGTGCT 59.341 40.000 0.00 0.00 39.19 4.40
1976 2084 5.822204 AGTATTGCCCTTATGGTAAACACA 58.178 37.500 0.00 0.00 42.42 3.72
1987 2095 8.746530 CCTTATGGTAAACACAGAAGTAGTAGA 58.253 37.037 0.00 0.00 35.88 2.59
2002 2110 8.408601 AGAAGTAGTAGAAGTGACGTTAAAACA 58.591 33.333 0.00 0.00 0.00 2.83
2173 2301 2.161855 CCTGTGCTTGCTATTGGTTGA 58.838 47.619 0.00 0.00 0.00 3.18
2174 2302 2.163010 CCTGTGCTTGCTATTGGTTGAG 59.837 50.000 0.00 0.00 0.00 3.02
2273 2401 6.717084 CACTAGATGCCCGATCCATATAGATA 59.283 42.308 14.97 0.00 36.90 1.98
2302 2430 1.070134 TGCTTAGATACCCATGCCGAC 59.930 52.381 0.00 0.00 0.00 4.79
2682 2852 6.252228 GCTTGCTGAAATGAGTATAAAGTTGC 59.748 38.462 0.00 0.00 0.00 4.17
2685 2855 6.094048 TGCTGAAATGAGTATAAAGTTGCCTC 59.906 38.462 0.00 0.00 0.00 4.70
3482 3659 8.951787 TGTCATTTGTACTTTGTTACTAGTGT 57.048 30.769 5.39 0.00 0.00 3.55
3690 3867 6.862711 AGTTTCTTTTTAACGCTAGCTCTT 57.137 33.333 13.93 6.46 0.00 2.85
4296 4473 9.428097 GTCTGTGATACATGAGATATTATGCAA 57.572 33.333 0.00 0.00 0.00 4.08
4299 4476 9.947433 TGTGATACATGAGATATTATGCAATCA 57.053 29.630 0.00 6.62 32.31 2.57
4323 4500 9.453572 TCATATGGAAGGATATATCAAAACAGC 57.546 33.333 14.60 0.00 0.00 4.40
4340 4517 2.665000 CACGGATGCCAGACCACT 59.335 61.111 0.00 0.00 0.00 4.00
4357 4534 3.319122 ACCACTTGAAATTTCTCCTGTGC 59.681 43.478 18.64 0.00 0.00 4.57
4385 4562 9.941325 GTAGTCATCTGGATTCTGATTGATATT 57.059 33.333 0.00 0.00 30.57 1.28
4582 4759 2.168496 GATACCGGGTGCTGCTAGATA 58.832 52.381 10.66 0.00 0.00 1.98
4646 6417 4.339247 AGCACCATTCAACCAGTTATATGC 59.661 41.667 0.00 0.00 0.00 3.14
4664 6435 4.708726 ATGCAACTTCTTTAGCATGTCC 57.291 40.909 0.00 0.00 45.19 4.02
4666 6437 3.084786 GCAACTTCTTTAGCATGTCCCT 58.915 45.455 0.00 0.00 0.00 4.20
4877 6678 2.838813 ACCCTCTTTAGCTTCTGGTACC 59.161 50.000 4.43 4.43 0.00 3.34
4878 6679 2.838202 CCCTCTTTAGCTTCTGGTACCA 59.162 50.000 15.39 15.39 0.00 3.25
4982 6783 4.600062 TGGAGAGAGTTATACAGCAGTCA 58.400 43.478 0.00 0.00 0.00 3.41
5030 6831 7.011482 CAGCAGGAAGTTGACAAGGTAATATAC 59.989 40.741 0.00 0.00 0.00 1.47
5100 6905 6.859017 TCTGCATGACTTGTATAACTCGTTA 58.141 36.000 0.00 0.00 0.00 3.18
5388 9770 0.180406 AGAGTGCGGAAACAACACCT 59.820 50.000 0.00 0.00 37.68 4.00
5463 9845 1.949525 ACCTGACATTGTTGACAGTGC 59.050 47.619 6.55 1.64 41.97 4.40
5494 9879 6.109156 TGATAGAGTGGTGTTGTATGTGTT 57.891 37.500 0.00 0.00 0.00 3.32
5646 10031 4.403752 CACTGGATGTCTCTTCTGTCCATA 59.596 45.833 0.00 0.00 38.23 2.74
5655 10040 2.166459 TCTTCTGTCCATACCTTCAGCG 59.834 50.000 0.00 0.00 0.00 5.18
5709 10096 4.521639 GGTAGTACCCCAAAACAAAAGAGG 59.478 45.833 8.27 0.00 30.04 3.69
5756 10143 2.522060 AGCGACGACTGCTTCTTTG 58.478 52.632 0.00 0.00 40.48 2.77
5775 10165 2.226330 TGGTTTTCCATGGTGAACTCG 58.774 47.619 22.93 0.00 46.22 4.18
5819 10209 2.801679 CGTGTTAGCGGTTGGTAAAAGA 59.198 45.455 0.00 0.00 39.57 2.52
5835 10225 2.669569 GAGCTTGCAAGGGACGCA 60.670 61.111 27.10 0.00 37.68 5.24
5846 10236 2.169769 CAAGGGACGCAAGGGAATACTA 59.830 50.000 0.00 0.00 46.39 1.82
5848 10238 2.841881 AGGGACGCAAGGGAATACTAAA 59.158 45.455 0.00 0.00 46.39 1.85
5849 10239 3.264964 AGGGACGCAAGGGAATACTAAAA 59.735 43.478 0.00 0.00 46.39 1.52
5850 10240 4.011698 GGGACGCAAGGGAATACTAAAAA 58.988 43.478 0.00 0.00 46.39 1.94
5851 10241 4.095932 GGGACGCAAGGGAATACTAAAAAG 59.904 45.833 0.00 0.00 46.39 2.27
5855 10245 6.675026 ACGCAAGGGAATACTAAAAAGAAAC 58.325 36.000 0.00 0.00 46.39 2.78
5856 10246 5.793457 CGCAAGGGAATACTAAAAAGAAACG 59.207 40.000 0.00 0.00 0.00 3.60
5857 10247 6.567132 CGCAAGGGAATACTAAAAAGAAACGT 60.567 38.462 0.00 0.00 0.00 3.99
5858 10248 7.360269 CGCAAGGGAATACTAAAAAGAAACGTA 60.360 37.037 0.00 0.00 0.00 3.57
5901 10397 9.669353 AAATCAATATCATTAGAACGTCATTGC 57.331 29.630 0.00 0.00 0.00 3.56
6036 10535 6.034577 GGAAGTAAAATCGCAGCCATTTTTAC 59.965 38.462 14.89 16.12 41.49 2.01
6042 10541 3.278574 TCGCAGCCATTTTTACAGCTAT 58.721 40.909 0.00 0.00 33.33 2.97
6103 10635 4.330074 CACACTCCAATGGACGTCTTTATC 59.670 45.833 16.46 0.00 0.00 1.75
6227 10759 1.003112 TTGTAATTCGGGCGCACCT 60.003 52.632 10.83 0.00 36.97 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.673711 AGCTTTTTCCATGGTTAAAAGTTTTTC 58.326 29.630 31.79 23.09 39.73 2.29
1 2 8.574251 AGCTTTTTCCATGGTTAAAAGTTTTT 57.426 26.923 31.79 21.70 39.73 1.94
2 3 8.574251 AAGCTTTTTCCATGGTTAAAAGTTTT 57.426 26.923 31.79 26.72 38.36 2.43
3 4 7.826744 TGAAGCTTTTTCCATGGTTAAAAGTTT 59.173 29.630 31.49 31.49 41.65 2.66
4 5 7.334858 TGAAGCTTTTTCCATGGTTAAAAGTT 58.665 30.769 31.79 28.19 39.73 2.66
5 6 6.883744 TGAAGCTTTTTCCATGGTTAAAAGT 58.116 32.000 31.79 23.00 39.73 2.66
7 8 6.540551 GGTTGAAGCTTTTTCCATGGTTAAAA 59.459 34.615 12.58 17.04 0.00 1.52
13 14 2.610232 CCGGTTGAAGCTTTTTCCATGG 60.610 50.000 4.97 4.97 0.00 3.66
14 15 2.676076 CCGGTTGAAGCTTTTTCCATG 58.324 47.619 0.00 0.00 0.00 3.66
15 16 1.000843 GCCGGTTGAAGCTTTTTCCAT 59.999 47.619 1.90 0.00 0.00 3.41
16 17 0.387565 GCCGGTTGAAGCTTTTTCCA 59.612 50.000 1.90 0.00 0.00 3.53
17 18 0.387565 TGCCGGTTGAAGCTTTTTCC 59.612 50.000 1.90 2.56 0.00 3.13
18 19 2.127251 CTTGCCGGTTGAAGCTTTTTC 58.873 47.619 1.90 0.00 0.00 2.29
19 20 1.202521 CCTTGCCGGTTGAAGCTTTTT 60.203 47.619 1.90 0.00 0.00 1.94
20 21 0.389025 CCTTGCCGGTTGAAGCTTTT 59.611 50.000 1.90 0.00 0.00 2.27
21 22 0.467290 TCCTTGCCGGTTGAAGCTTT 60.467 50.000 1.90 0.00 0.00 3.51
22 23 0.467290 TTCCTTGCCGGTTGAAGCTT 60.467 50.000 1.90 0.00 0.00 3.74
23 24 0.467290 TTTCCTTGCCGGTTGAAGCT 60.467 50.000 1.90 0.00 0.00 3.74
24 25 0.387565 TTTTCCTTGCCGGTTGAAGC 59.612 50.000 1.90 0.00 0.00 3.86
25 26 2.742774 CTTTTTCCTTGCCGGTTGAAG 58.257 47.619 1.90 3.06 0.00 3.02
26 27 1.202475 GCTTTTTCCTTGCCGGTTGAA 60.202 47.619 1.90 0.00 0.00 2.69
27 28 0.387565 GCTTTTTCCTTGCCGGTTGA 59.612 50.000 1.90 0.00 0.00 3.18
28 29 0.389025 AGCTTTTTCCTTGCCGGTTG 59.611 50.000 1.90 0.00 0.00 3.77
29 30 1.068588 GAAGCTTTTTCCTTGCCGGTT 59.931 47.619 1.90 0.00 0.00 4.44
30 31 0.673985 GAAGCTTTTTCCTTGCCGGT 59.326 50.000 1.90 0.00 0.00 5.28
31 32 0.673437 TGAAGCTTTTTCCTTGCCGG 59.327 50.000 0.00 0.00 0.00 6.13
32 33 2.507339 TTGAAGCTTTTTCCTTGCCG 57.493 45.000 0.00 0.00 0.00 5.69
33 34 2.989166 CGATTGAAGCTTTTTCCTTGCC 59.011 45.455 0.00 0.00 0.00 4.52
34 35 2.989166 CCGATTGAAGCTTTTTCCTTGC 59.011 45.455 0.00 0.00 0.00 4.01
35 36 2.989166 GCCGATTGAAGCTTTTTCCTTG 59.011 45.455 0.00 0.00 0.00 3.61
36 37 2.627699 TGCCGATTGAAGCTTTTTCCTT 59.372 40.909 0.00 0.00 0.00 3.36
37 38 2.238521 TGCCGATTGAAGCTTTTTCCT 58.761 42.857 0.00 0.00 0.00 3.36
38 39 2.723124 TGCCGATTGAAGCTTTTTCC 57.277 45.000 0.00 0.00 0.00 3.13
39 40 2.989166 CCTTGCCGATTGAAGCTTTTTC 59.011 45.455 0.00 0.00 0.00 2.29
40 41 2.627699 TCCTTGCCGATTGAAGCTTTTT 59.372 40.909 0.00 0.00 0.00 1.94
41 42 2.238521 TCCTTGCCGATTGAAGCTTTT 58.761 42.857 0.00 0.00 0.00 2.27
42 43 1.909700 TCCTTGCCGATTGAAGCTTT 58.090 45.000 0.00 0.00 0.00 3.51
43 44 1.909700 TTCCTTGCCGATTGAAGCTT 58.090 45.000 0.00 0.00 0.00 3.74
44 45 1.909700 TTTCCTTGCCGATTGAAGCT 58.090 45.000 0.00 0.00 0.00 3.74
45 46 2.723124 TTTTCCTTGCCGATTGAAGC 57.277 45.000 0.00 0.00 0.00 3.86
62 63 0.881796 GCGCCCAGTAGAAGCTTTTT 59.118 50.000 0.00 0.00 0.00 1.94
63 64 0.960861 GGCGCCCAGTAGAAGCTTTT 60.961 55.000 18.11 0.00 0.00 2.27
64 65 1.377333 GGCGCCCAGTAGAAGCTTT 60.377 57.895 18.11 0.00 0.00 3.51
65 66 2.269241 GGCGCCCAGTAGAAGCTT 59.731 61.111 18.11 0.00 0.00 3.74
66 67 4.148825 CGGCGCCCAGTAGAAGCT 62.149 66.667 23.46 0.00 0.00 3.74
67 68 4.143333 TCGGCGCCCAGTAGAAGC 62.143 66.667 23.46 0.00 0.00 3.86
68 69 2.202756 GTCGGCGCCCAGTAGAAG 60.203 66.667 23.46 3.72 0.00 2.85
69 70 2.355986 ATGTCGGCGCCCAGTAGAA 61.356 57.895 23.46 3.44 0.00 2.10
70 71 2.758327 ATGTCGGCGCCCAGTAGA 60.758 61.111 23.46 9.18 0.00 2.59
71 72 2.586079 CATGTCGGCGCCCAGTAG 60.586 66.667 23.46 6.36 0.00 2.57
72 73 4.155733 CCATGTCGGCGCCCAGTA 62.156 66.667 23.46 5.18 0.00 2.74
79 80 2.202743 ATCGTCACCATGTCGGCG 60.203 61.111 0.00 0.00 39.03 6.46
80 81 2.173669 CCATCGTCACCATGTCGGC 61.174 63.158 0.00 0.00 39.03 5.54
81 82 1.083806 CACCATCGTCACCATGTCGG 61.084 60.000 0.00 0.00 42.50 4.79
82 83 0.389817 ACACCATCGTCACCATGTCG 60.390 55.000 0.00 0.00 0.00 4.35
83 84 1.078709 CACACCATCGTCACCATGTC 58.921 55.000 0.00 0.00 0.00 3.06
84 85 0.684535 TCACACCATCGTCACCATGT 59.315 50.000 0.00 0.00 0.00 3.21
85 86 1.362768 CTCACACCATCGTCACCATG 58.637 55.000 0.00 0.00 0.00 3.66
86 87 0.391661 GCTCACACCATCGTCACCAT 60.392 55.000 0.00 0.00 0.00 3.55
87 88 1.005037 GCTCACACCATCGTCACCA 60.005 57.895 0.00 0.00 0.00 4.17
88 89 2.094659 CGCTCACACCATCGTCACC 61.095 63.158 0.00 0.00 0.00 4.02
89 90 2.094659 CCGCTCACACCATCGTCAC 61.095 63.158 0.00 0.00 0.00 3.67
90 91 2.261361 CCGCTCACACCATCGTCA 59.739 61.111 0.00 0.00 0.00 4.35
91 92 3.188786 GCCGCTCACACCATCGTC 61.189 66.667 0.00 0.00 0.00 4.20
92 93 3.529341 TTGCCGCTCACACCATCGT 62.529 57.895 0.00 0.00 0.00 3.73
93 94 2.741985 TTGCCGCTCACACCATCG 60.742 61.111 0.00 0.00 0.00 3.84
94 95 1.965930 TGTTGCCGCTCACACCATC 60.966 57.895 0.00 0.00 0.00 3.51
95 96 2.112928 TGTTGCCGCTCACACCAT 59.887 55.556 0.00 0.00 0.00 3.55
96 97 2.899838 GTGTTGCCGCTCACACCA 60.900 61.111 12.89 0.00 35.04 4.17
97 98 3.660111 GGTGTTGCCGCTCACACC 61.660 66.667 22.30 22.30 44.55 4.16
132 133 1.577922 CATCATAGCACCGCCATGC 59.422 57.895 0.00 0.00 46.50 4.06
133 134 1.859427 GCCATCATAGCACCGCCATG 61.859 60.000 0.00 0.00 0.00 3.66
134 135 1.601759 GCCATCATAGCACCGCCAT 60.602 57.895 0.00 0.00 0.00 4.40
135 136 2.203195 GCCATCATAGCACCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
136 137 3.349006 CGCCATCATAGCACCGCC 61.349 66.667 0.00 0.00 0.00 6.13
137 138 3.349006 CCGCCATCATAGCACCGC 61.349 66.667 0.00 0.00 0.00 5.68
138 139 2.108976 ACCGCCATCATAGCACCG 59.891 61.111 0.00 0.00 0.00 4.94
139 140 1.893808 CCACCGCCATCATAGCACC 60.894 63.158 0.00 0.00 0.00 5.01
140 141 2.546494 GCCACCGCCATCATAGCAC 61.546 63.158 0.00 0.00 0.00 4.40
141 142 1.406860 TAGCCACCGCCATCATAGCA 61.407 55.000 0.00 0.00 34.57 3.49
142 143 0.250295 TTAGCCACCGCCATCATAGC 60.250 55.000 0.00 0.00 34.57 2.97
143 144 2.479566 ATTAGCCACCGCCATCATAG 57.520 50.000 0.00 0.00 34.57 2.23
144 145 2.158682 ACAATTAGCCACCGCCATCATA 60.159 45.455 0.00 0.00 34.57 2.15
145 146 1.321474 CAATTAGCCACCGCCATCAT 58.679 50.000 0.00 0.00 34.57 2.45
146 147 0.034574 ACAATTAGCCACCGCCATCA 60.035 50.000 0.00 0.00 34.57 3.07
147 148 1.102978 AACAATTAGCCACCGCCATC 58.897 50.000 0.00 0.00 34.57 3.51
148 149 0.817013 CAACAATTAGCCACCGCCAT 59.183 50.000 0.00 0.00 34.57 4.40
149 150 0.538516 ACAACAATTAGCCACCGCCA 60.539 50.000 0.00 0.00 34.57 5.69
150 151 1.455248 TACAACAATTAGCCACCGCC 58.545 50.000 0.00 0.00 34.57 6.13
151 152 2.226912 TGTTACAACAATTAGCCACCGC 59.773 45.455 0.00 0.00 35.67 5.68
152 153 4.491234 TTGTTACAACAATTAGCCACCG 57.509 40.909 3.44 0.00 43.45 4.94
162 163 3.063725 CGACCCTTTCGTTGTTACAACAA 59.936 43.478 25.05 16.03 43.24 2.83
163 164 2.608546 CGACCCTTTCGTTGTTACAACA 59.391 45.455 25.05 11.56 43.24 3.33
164 165 3.243226 CGACCCTTTCGTTGTTACAAC 57.757 47.619 17.34 17.34 43.24 3.32
175 176 0.463833 ATCGAATGCCCGACCCTTTC 60.464 55.000 0.00 0.00 41.70 2.62
176 177 0.748005 CATCGAATGCCCGACCCTTT 60.748 55.000 0.00 0.00 41.70 3.11
177 178 1.153168 CATCGAATGCCCGACCCTT 60.153 57.895 0.00 0.00 41.70 3.95
178 179 1.910580 AACATCGAATGCCCGACCCT 61.911 55.000 0.00 0.00 41.70 4.34
179 180 1.451387 AACATCGAATGCCCGACCC 60.451 57.895 0.00 0.00 41.70 4.46
180 181 1.721487 CAACATCGAATGCCCGACC 59.279 57.895 0.00 0.00 41.70 4.79
181 182 1.062525 GCAACATCGAATGCCCGAC 59.937 57.895 9.35 0.00 41.70 4.79
182 183 0.176910 TAGCAACATCGAATGCCCGA 59.823 50.000 15.06 0.00 43.57 5.14
183 184 0.304705 GTAGCAACATCGAATGCCCG 59.695 55.000 15.06 0.00 43.57 6.13
184 185 1.331756 CTGTAGCAACATCGAATGCCC 59.668 52.381 15.06 8.73 43.57 5.36
185 186 2.279741 TCTGTAGCAACATCGAATGCC 58.720 47.619 15.06 4.68 43.57 4.40
186 187 3.674423 GTTCTGTAGCAACATCGAATGC 58.326 45.455 11.86 11.86 42.87 3.56
187 188 3.612423 TCGTTCTGTAGCAACATCGAATG 59.388 43.478 0.00 0.00 34.37 2.67
188 189 3.612860 GTCGTTCTGTAGCAACATCGAAT 59.387 43.478 0.00 0.00 36.06 3.34
189 190 2.984471 GTCGTTCTGTAGCAACATCGAA 59.016 45.455 0.00 0.00 36.06 3.71
190 191 2.592194 GTCGTTCTGTAGCAACATCGA 58.408 47.619 0.00 0.00 34.37 3.59
191 192 1.317611 CGTCGTTCTGTAGCAACATCG 59.682 52.381 0.00 0.00 34.37 3.84
192 193 2.341760 GTCGTCGTTCTGTAGCAACATC 59.658 50.000 0.00 0.00 34.37 3.06
193 194 2.287970 TGTCGTCGTTCTGTAGCAACAT 60.288 45.455 0.00 0.00 34.37 2.71
194 195 1.065851 TGTCGTCGTTCTGTAGCAACA 59.934 47.619 0.00 0.00 0.00 3.33
195 196 1.762419 TGTCGTCGTTCTGTAGCAAC 58.238 50.000 0.00 0.00 0.00 4.17
196 197 2.324860 CATGTCGTCGTTCTGTAGCAA 58.675 47.619 0.00 0.00 0.00 3.91
197 198 1.402325 CCATGTCGTCGTTCTGTAGCA 60.402 52.381 0.00 0.00 0.00 3.49
198 199 1.269166 CCATGTCGTCGTTCTGTAGC 58.731 55.000 0.00 0.00 0.00 3.58
199 200 2.251040 CACCATGTCGTCGTTCTGTAG 58.749 52.381 0.00 0.00 0.00 2.74
200 201 1.667756 GCACCATGTCGTCGTTCTGTA 60.668 52.381 0.00 0.00 0.00 2.74
201 202 0.944311 GCACCATGTCGTCGTTCTGT 60.944 55.000 0.00 0.00 0.00 3.41
202 203 0.667487 AGCACCATGTCGTCGTTCTG 60.667 55.000 0.00 0.00 0.00 3.02
203 204 0.667487 CAGCACCATGTCGTCGTTCT 60.667 55.000 0.00 0.00 0.00 3.01
204 205 1.781555 CAGCACCATGTCGTCGTTC 59.218 57.895 0.00 0.00 0.00 3.95
205 206 2.317609 GCAGCACCATGTCGTCGTT 61.318 57.895 0.00 0.00 0.00 3.85
206 207 2.738521 GCAGCACCATGTCGTCGT 60.739 61.111 0.00 0.00 0.00 4.34
207 208 3.842126 CGCAGCACCATGTCGTCG 61.842 66.667 0.00 0.00 0.00 5.12
208 209 2.432456 TCGCAGCACCATGTCGTC 60.432 61.111 0.00 0.00 0.00 4.20
209 210 2.738521 GTCGCAGCACCATGTCGT 60.739 61.111 0.00 0.00 0.00 4.34
210 211 3.842126 CGTCGCAGCACCATGTCG 61.842 66.667 0.00 0.00 0.00 4.35
211 212 2.432456 TCGTCGCAGCACCATGTC 60.432 61.111 0.00 0.00 0.00 3.06
212 213 2.433145 CTCGTCGCAGCACCATGT 60.433 61.111 0.00 0.00 0.00 3.21
213 214 3.190849 CCTCGTCGCAGCACCATG 61.191 66.667 0.00 0.00 0.00 3.66
214 215 3.649277 GACCTCGTCGCAGCACCAT 62.649 63.158 0.00 0.00 0.00 3.55
215 216 4.357947 GACCTCGTCGCAGCACCA 62.358 66.667 0.00 0.00 0.00 4.17
217 218 4.057428 AGGACCTCGTCGCAGCAC 62.057 66.667 0.00 0.00 32.65 4.40
218 219 4.056125 CAGGACCTCGTCGCAGCA 62.056 66.667 0.00 0.00 32.65 4.41
220 221 2.329678 CTAGCAGGACCTCGTCGCAG 62.330 65.000 4.51 0.00 32.65 5.18
221 222 2.360726 TAGCAGGACCTCGTCGCA 60.361 61.111 4.51 0.00 32.65 5.10
222 223 1.654954 TTCTAGCAGGACCTCGTCGC 61.655 60.000 0.00 0.00 32.65 5.19
223 224 0.099082 GTTCTAGCAGGACCTCGTCG 59.901 60.000 0.00 0.00 32.65 5.12
224 225 0.456628 GGTTCTAGCAGGACCTCGTC 59.543 60.000 6.42 0.00 0.00 4.20
225 226 1.313812 CGGTTCTAGCAGGACCTCGT 61.314 60.000 10.69 0.00 0.00 4.18
226 227 1.433879 CGGTTCTAGCAGGACCTCG 59.566 63.158 10.69 0.00 0.00 4.63
227 228 1.817209 CCGGTTCTAGCAGGACCTC 59.183 63.158 10.69 0.00 0.00 3.85
228 229 2.359967 GCCGGTTCTAGCAGGACCT 61.360 63.158 1.90 0.00 0.00 3.85
229 230 2.187163 GCCGGTTCTAGCAGGACC 59.813 66.667 1.90 4.08 0.00 4.46
230 231 2.202756 CGCCGGTTCTAGCAGGAC 60.203 66.667 1.90 0.00 0.00 3.85
231 232 2.361992 TCGCCGGTTCTAGCAGGA 60.362 61.111 1.90 0.00 0.00 3.86
232 233 2.105128 CTCGCCGGTTCTAGCAGG 59.895 66.667 1.90 0.00 0.00 4.85
233 234 2.583593 GCTCGCCGGTTCTAGCAG 60.584 66.667 1.90 0.00 35.05 4.24
234 235 3.378602 TGCTCGCCGGTTCTAGCA 61.379 61.111 15.18 15.18 42.41 3.49
235 236 2.886124 GTGCTCGCCGGTTCTAGC 60.886 66.667 1.90 7.91 35.51 3.42
236 237 2.537792 TTCGTGCTCGCCGGTTCTAG 62.538 60.000 1.90 0.00 36.96 2.43
237 238 1.940883 ATTCGTGCTCGCCGGTTCTA 61.941 55.000 1.90 0.00 36.96 2.10
238 239 3.296709 ATTCGTGCTCGCCGGTTCT 62.297 57.895 1.90 0.00 36.96 3.01
239 240 2.813908 ATTCGTGCTCGCCGGTTC 60.814 61.111 1.90 0.00 36.96 3.62
240 241 3.118454 CATTCGTGCTCGCCGGTT 61.118 61.111 1.90 0.00 36.96 4.44
243 244 4.214383 CAGCATTCGTGCTCGCCG 62.214 66.667 2.69 0.00 44.30 6.46
244 245 4.527157 GCAGCATTCGTGCTCGCC 62.527 66.667 2.69 0.00 44.30 5.54
245 246 4.858200 CGCAGCATTCGTGCTCGC 62.858 66.667 2.69 7.23 44.30 5.03
246 247 3.135382 CTCGCAGCATTCGTGCTCG 62.135 63.158 0.81 0.81 44.30 5.03
247 248 2.699809 CTCGCAGCATTCGTGCTC 59.300 61.111 0.00 0.00 44.30 4.26
249 250 2.815211 TCCTCGCAGCATTCGTGC 60.815 61.111 0.00 0.00 37.58 5.34
250 251 2.792290 CGTCCTCGCAGCATTCGTG 61.792 63.158 0.00 0.00 0.00 4.35
251 252 2.507102 CGTCCTCGCAGCATTCGT 60.507 61.111 0.00 0.00 0.00 3.85
252 253 2.202610 TCGTCCTCGCAGCATTCG 60.203 61.111 0.00 0.00 36.96 3.34
253 254 0.100682 TAGTCGTCCTCGCAGCATTC 59.899 55.000 0.00 0.00 36.96 2.67
254 255 0.179134 GTAGTCGTCCTCGCAGCATT 60.179 55.000 0.00 0.00 36.96 3.56
255 256 1.433879 GTAGTCGTCCTCGCAGCAT 59.566 57.895 0.00 0.00 36.96 3.79
256 257 2.697761 GGTAGTCGTCCTCGCAGCA 61.698 63.158 0.00 0.00 36.96 4.41
257 258 2.102553 GGTAGTCGTCCTCGCAGC 59.897 66.667 0.00 0.00 36.96 5.25
258 259 2.403987 CGGTAGTCGTCCTCGCAG 59.596 66.667 0.00 0.00 36.96 5.18
259 260 3.129502 CCGGTAGTCGTCCTCGCA 61.130 66.667 0.00 0.00 37.11 5.10
260 261 4.549516 GCCGGTAGTCGTCCTCGC 62.550 72.222 1.90 0.00 37.11 5.03
261 262 4.233635 CGCCGGTAGTCGTCCTCG 62.234 72.222 1.90 0.00 37.11 4.63
262 263 3.885521 CCGCCGGTAGTCGTCCTC 61.886 72.222 1.90 0.00 37.11 3.71
278 279 4.394712 CTGGTCACTGTCCCCGCC 62.395 72.222 0.00 0.00 0.00 6.13
279 280 3.626924 ACTGGTCACTGTCCCCGC 61.627 66.667 0.00 0.00 0.00 6.13
280 281 2.343758 CACTGGTCACTGTCCCCG 59.656 66.667 0.00 0.00 0.00 5.73
281 282 2.147387 ACCACTGGTCACTGTCCCC 61.147 63.158 0.00 0.00 0.00 4.81
282 283 1.071471 CACCACTGGTCACTGTCCC 59.929 63.158 0.00 0.00 31.02 4.46
283 284 0.034059 CTCACCACTGGTCACTGTCC 59.966 60.000 0.00 0.00 31.02 4.02
284 285 0.601311 GCTCACCACTGGTCACTGTC 60.601 60.000 0.00 0.00 31.02 3.51
285 286 1.050988 AGCTCACCACTGGTCACTGT 61.051 55.000 0.00 0.00 31.02 3.55
286 287 0.602106 CAGCTCACCACTGGTCACTG 60.602 60.000 0.00 2.69 31.02 3.66
287 288 1.750930 CAGCTCACCACTGGTCACT 59.249 57.895 0.00 0.00 31.02 3.41
288 289 4.368391 CAGCTCACCACTGGTCAC 57.632 61.111 0.00 0.00 31.02 3.67
293 294 1.303799 GCATCACCAGCTCACCACTG 61.304 60.000 0.00 0.00 34.82 3.66
294 295 1.002868 GCATCACCAGCTCACCACT 60.003 57.895 0.00 0.00 0.00 4.00
295 296 0.607489 AAGCATCACCAGCTCACCAC 60.607 55.000 0.00 0.00 42.53 4.16
296 297 0.321919 GAAGCATCACCAGCTCACCA 60.322 55.000 0.00 0.00 42.53 4.17
297 298 0.321919 TGAAGCATCACCAGCTCACC 60.322 55.000 0.00 0.00 42.53 4.02
298 299 1.467734 CTTGAAGCATCACCAGCTCAC 59.532 52.381 0.00 0.00 42.53 3.51
299 300 1.612462 CCTTGAAGCATCACCAGCTCA 60.612 52.381 0.00 0.00 42.53 4.26
300 301 1.093159 CCTTGAAGCATCACCAGCTC 58.907 55.000 0.00 0.00 42.53 4.09
301 302 0.323178 CCCTTGAAGCATCACCAGCT 60.323 55.000 0.00 0.00 45.97 4.24
302 303 1.318158 CCCCTTGAAGCATCACCAGC 61.318 60.000 0.00 0.00 34.61 4.85
303 304 0.329261 TCCCCTTGAAGCATCACCAG 59.671 55.000 0.00 0.00 34.61 4.00
304 305 0.038166 GTCCCCTTGAAGCATCACCA 59.962 55.000 0.00 0.00 34.61 4.17
305 306 1.026718 CGTCCCCTTGAAGCATCACC 61.027 60.000 0.00 0.00 34.61 4.02
306 307 0.036388 TCGTCCCCTTGAAGCATCAC 60.036 55.000 0.00 0.00 34.61 3.06
307 308 0.036388 GTCGTCCCCTTGAAGCATCA 60.036 55.000 0.00 0.00 0.00 3.07
308 309 1.084370 CGTCGTCCCCTTGAAGCATC 61.084 60.000 0.00 0.00 0.00 3.91
309 310 1.079127 CGTCGTCCCCTTGAAGCAT 60.079 57.895 0.00 0.00 0.00 3.79
310 311 2.204461 TCGTCGTCCCCTTGAAGCA 61.204 57.895 0.00 0.00 0.00 3.91
311 312 1.737008 GTCGTCGTCCCCTTGAAGC 60.737 63.158 0.00 0.00 0.00 3.86
312 313 1.080025 GGTCGTCGTCCCCTTGAAG 60.080 63.158 0.00 0.00 0.00 3.02
313 314 2.922950 CGGTCGTCGTCCCCTTGAA 61.923 63.158 2.84 0.00 0.00 2.69
314 315 3.367743 CGGTCGTCGTCCCCTTGA 61.368 66.667 2.84 0.00 0.00 3.02
315 316 4.430765 CCGGTCGTCGTCCCCTTG 62.431 72.222 2.84 0.00 37.11 3.61
345 346 4.778143 CGGACCTTGAAGCCCCCG 62.778 72.222 4.35 4.35 0.00 5.73
346 347 4.426313 CCGGACCTTGAAGCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
372 373 1.940883 TACCACTGGACATCGGCGAC 61.941 60.000 13.76 0.00 0.00 5.19
373 374 1.679641 TACCACTGGACATCGGCGA 60.680 57.895 13.87 13.87 0.00 5.54
374 375 1.518572 GTACCACTGGACATCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
375 376 0.460284 CAGTACCACTGGACATCGGC 60.460 60.000 0.71 0.00 42.35 5.54
376 377 3.741029 CAGTACCACTGGACATCGG 57.259 57.895 0.71 0.00 42.35 4.18
385 386 4.447138 TCCAATCCAAAACAGTACCACT 57.553 40.909 0.00 0.00 0.00 4.00
386 387 4.618227 GCATCCAATCCAAAACAGTACCAC 60.618 45.833 0.00 0.00 0.00 4.16
387 388 3.509575 GCATCCAATCCAAAACAGTACCA 59.490 43.478 0.00 0.00 0.00 3.25
388 389 3.119137 GGCATCCAATCCAAAACAGTACC 60.119 47.826 0.00 0.00 0.00 3.34
389 390 3.427503 CGGCATCCAATCCAAAACAGTAC 60.428 47.826 0.00 0.00 0.00 2.73
390 391 2.752354 CGGCATCCAATCCAAAACAGTA 59.248 45.455 0.00 0.00 0.00 2.74
391 392 1.545582 CGGCATCCAATCCAAAACAGT 59.454 47.619 0.00 0.00 0.00 3.55
392 393 1.545582 ACGGCATCCAATCCAAAACAG 59.454 47.619 0.00 0.00 0.00 3.16
393 394 1.626686 ACGGCATCCAATCCAAAACA 58.373 45.000 0.00 0.00 0.00 2.83
394 395 2.741759 AACGGCATCCAATCCAAAAC 57.258 45.000 0.00 0.00 0.00 2.43
395 396 3.181461 ACAAAACGGCATCCAATCCAAAA 60.181 39.130 0.00 0.00 0.00 2.44
396 397 2.366916 ACAAAACGGCATCCAATCCAAA 59.633 40.909 0.00 0.00 0.00 3.28
397 398 1.967066 ACAAAACGGCATCCAATCCAA 59.033 42.857 0.00 0.00 0.00 3.53
398 399 1.626686 ACAAAACGGCATCCAATCCA 58.373 45.000 0.00 0.00 0.00 3.41
399 400 2.741759 AACAAAACGGCATCCAATCC 57.258 45.000 0.00 0.00 0.00 3.01
400 401 5.465935 TCTTAAACAAAACGGCATCCAATC 58.534 37.500 0.00 0.00 0.00 2.67
401 402 5.461032 TCTTAAACAAAACGGCATCCAAT 57.539 34.783 0.00 0.00 0.00 3.16
402 403 4.920640 TCTTAAACAAAACGGCATCCAA 57.079 36.364 0.00 0.00 0.00 3.53
403 404 4.920640 TTCTTAAACAAAACGGCATCCA 57.079 36.364 0.00 0.00 0.00 3.41
404 405 6.591313 TTTTTCTTAAACAAAACGGCATCC 57.409 33.333 0.00 0.00 0.00 3.51
427 428 2.328319 TCTGGCCCTTTGCATCTTTTT 58.672 42.857 0.00 0.00 43.89 1.94
428 429 2.014010 TCTGGCCCTTTGCATCTTTT 57.986 45.000 0.00 0.00 43.89 2.27
429 430 2.105766 GATCTGGCCCTTTGCATCTTT 58.894 47.619 0.00 0.00 43.89 2.52
430 431 1.287146 AGATCTGGCCCTTTGCATCTT 59.713 47.619 0.00 0.00 43.89 2.40
431 432 0.924823 AGATCTGGCCCTTTGCATCT 59.075 50.000 0.00 0.00 43.89 2.90
432 433 1.030457 CAGATCTGGCCCTTTGCATC 58.970 55.000 15.38 0.00 43.89 3.91
433 434 0.627451 TCAGATCTGGCCCTTTGCAT 59.373 50.000 22.42 0.00 43.89 3.96
434 435 0.322816 GTCAGATCTGGCCCTTTGCA 60.323 55.000 22.42 0.00 43.89 4.08
435 436 1.372087 CGTCAGATCTGGCCCTTTGC 61.372 60.000 21.34 2.47 40.16 3.68
436 437 0.250234 TCGTCAGATCTGGCCCTTTG 59.750 55.000 21.34 7.26 0.00 2.77
437 438 1.134280 CATCGTCAGATCTGGCCCTTT 60.134 52.381 21.34 1.14 34.23 3.11
438 439 0.467384 CATCGTCAGATCTGGCCCTT 59.533 55.000 21.34 3.69 34.23 3.95
439 440 1.406065 CCATCGTCAGATCTGGCCCT 61.406 60.000 21.34 6.11 34.23 5.19
440 441 1.070445 CCATCGTCAGATCTGGCCC 59.930 63.158 21.34 9.41 34.23 5.80
441 442 1.070445 CCCATCGTCAGATCTGGCC 59.930 63.158 21.34 11.79 34.23 5.36
442 443 1.040646 TACCCATCGTCAGATCTGGC 58.959 55.000 22.42 20.11 34.23 4.85
443 444 2.430694 TGTTACCCATCGTCAGATCTGG 59.569 50.000 22.42 7.73 34.23 3.86
444 445 3.801114 TGTTACCCATCGTCAGATCTG 57.199 47.619 17.07 17.07 34.23 2.90
445 446 3.513912 TGTTGTTACCCATCGTCAGATCT 59.486 43.478 0.00 0.00 34.23 2.75
446 447 3.857052 TGTTGTTACCCATCGTCAGATC 58.143 45.455 0.00 0.00 34.23 2.75
447 448 3.513912 TCTGTTGTTACCCATCGTCAGAT 59.486 43.478 0.00 0.00 37.65 2.90
448 449 2.894765 TCTGTTGTTACCCATCGTCAGA 59.105 45.455 0.00 0.00 0.00 3.27
449 450 3.313012 TCTGTTGTTACCCATCGTCAG 57.687 47.619 0.00 0.00 0.00 3.51
450 451 3.755112 TTCTGTTGTTACCCATCGTCA 57.245 42.857 0.00 0.00 0.00 4.35
451 452 4.330074 CAGATTCTGTTGTTACCCATCGTC 59.670 45.833 5.46 0.00 0.00 4.20
452 453 4.020573 TCAGATTCTGTTGTTACCCATCGT 60.021 41.667 13.23 0.00 32.61 3.73
453 454 4.330074 GTCAGATTCTGTTGTTACCCATCG 59.670 45.833 13.23 0.00 32.61 3.84
454 455 4.330074 CGTCAGATTCTGTTGTTACCCATC 59.670 45.833 13.23 0.00 32.61 3.51
455 456 4.253685 CGTCAGATTCTGTTGTTACCCAT 58.746 43.478 13.23 0.00 32.61 4.00
456 457 3.659786 CGTCAGATTCTGTTGTTACCCA 58.340 45.455 13.23 0.00 32.61 4.51
457 458 2.415512 GCGTCAGATTCTGTTGTTACCC 59.584 50.000 13.23 0.00 32.61 3.69
458 459 3.064207 TGCGTCAGATTCTGTTGTTACC 58.936 45.455 13.23 0.42 32.61 2.85
459 460 3.120649 GGTGCGTCAGATTCTGTTGTTAC 60.121 47.826 13.23 3.35 32.61 2.50
460 461 3.064207 GGTGCGTCAGATTCTGTTGTTA 58.936 45.455 13.23 0.00 32.61 2.41
461 462 1.873591 GGTGCGTCAGATTCTGTTGTT 59.126 47.619 13.23 0.00 32.61 2.83
462 463 1.202639 TGGTGCGTCAGATTCTGTTGT 60.203 47.619 13.23 0.00 32.61 3.32
463 464 1.462283 CTGGTGCGTCAGATTCTGTTG 59.538 52.381 13.23 8.25 36.93 3.33
464 465 1.344438 TCTGGTGCGTCAGATTCTGTT 59.656 47.619 13.23 0.00 38.70 3.16
465 466 0.969149 TCTGGTGCGTCAGATTCTGT 59.031 50.000 13.23 0.00 38.70 3.41
466 467 3.820595 TCTGGTGCGTCAGATTCTG 57.179 52.632 7.38 7.38 38.70 3.02
471 472 4.994744 CACATCTGGTGCGTCAGA 57.005 55.556 10.56 10.56 46.32 3.27
479 480 1.183030 TTCGGTCGGTCACATCTGGT 61.183 55.000 0.00 0.00 0.00 4.00
480 481 0.037697 TTTCGGTCGGTCACATCTGG 60.038 55.000 0.00 0.00 0.00 3.86
481 482 1.790755 TTTTCGGTCGGTCACATCTG 58.209 50.000 0.00 0.00 0.00 2.90
482 483 2.140717 GTTTTTCGGTCGGTCACATCT 58.859 47.619 0.00 0.00 0.00 2.90
483 484 2.096417 CAGTTTTTCGGTCGGTCACATC 60.096 50.000 0.00 0.00 0.00 3.06
484 485 1.871039 CAGTTTTTCGGTCGGTCACAT 59.129 47.619 0.00 0.00 0.00 3.21
485 486 1.292061 CAGTTTTTCGGTCGGTCACA 58.708 50.000 0.00 0.00 0.00 3.58
486 487 0.584876 CCAGTTTTTCGGTCGGTCAC 59.415 55.000 0.00 0.00 0.00 3.67
487 488 0.533308 CCCAGTTTTTCGGTCGGTCA 60.533 55.000 0.00 0.00 0.00 4.02
488 489 0.533531 ACCCAGTTTTTCGGTCGGTC 60.534 55.000 0.00 0.00 0.00 4.79
489 490 0.533531 GACCCAGTTTTTCGGTCGGT 60.534 55.000 0.00 0.00 36.97 4.69
490 491 2.241171 GACCCAGTTTTTCGGTCGG 58.759 57.895 0.00 0.00 36.97 4.79
492 493 2.241171 CCGACCCAGTTTTTCGGTC 58.759 57.895 1.03 0.00 45.95 4.79
493 494 4.468007 CCGACCCAGTTTTTCGGT 57.532 55.556 1.03 0.00 45.95 4.69
495 496 2.554272 CGCCGACCCAGTTTTTCG 59.446 61.111 0.00 0.00 0.00 3.46
496 497 2.254350 GCGCCGACCCAGTTTTTC 59.746 61.111 0.00 0.00 0.00 2.29
497 498 3.656045 CGCGCCGACCCAGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
498 499 2.992607 TAACGCGCCGACCCAGTTTT 62.993 55.000 5.73 0.00 0.00 2.43
499 500 3.518419 TAACGCGCCGACCCAGTTT 62.518 57.895 5.73 0.00 0.00 2.66
500 501 3.927163 CTAACGCGCCGACCCAGTT 62.927 63.158 5.73 0.13 0.00 3.16
501 502 4.430765 CTAACGCGCCGACCCAGT 62.431 66.667 5.73 0.00 0.00 4.00
521 522 1.030488 CAGAATGGGGCAGTGCTCTG 61.030 60.000 16.13 15.25 43.87 3.35
522 523 1.302285 CAGAATGGGGCAGTGCTCT 59.698 57.895 16.13 6.47 0.00 4.09
523 524 3.915575 CAGAATGGGGCAGTGCTC 58.084 61.111 16.11 11.67 0.00 4.26
534 535 1.798223 TGACGCTTCGTTTCCAGAATG 59.202 47.619 0.00 0.00 41.37 2.67
535 536 1.798813 GTGACGCTTCGTTTCCAGAAT 59.201 47.619 0.00 0.00 41.37 2.40
536 537 1.214367 GTGACGCTTCGTTTCCAGAA 58.786 50.000 0.00 0.00 41.37 3.02
537 538 0.103390 TGTGACGCTTCGTTTCCAGA 59.897 50.000 0.00 0.00 41.37 3.86
545 546 0.914551 CTAACCGATGTGACGCTTCG 59.085 55.000 15.25 15.25 42.27 3.79
609 611 5.422012 ACAATGCTTAAAATAGGGGGACTTG 59.578 40.000 0.00 0.00 0.00 3.16
610 612 5.589831 ACAATGCTTAAAATAGGGGGACTT 58.410 37.500 0.00 0.00 0.00 3.01
617 619 5.382303 CGCCGATACAATGCTTAAAATAGG 58.618 41.667 0.00 0.00 0.00 2.57
657 665 7.630242 AATCACCGTTCATTCATTTACTCAT 57.370 32.000 0.00 0.00 0.00 2.90
658 666 7.447374 AAATCACCGTTCATTCATTTACTCA 57.553 32.000 0.00 0.00 0.00 3.41
659 667 9.834628 TTAAAATCACCGTTCATTCATTTACTC 57.165 29.630 0.00 0.00 0.00 2.59
764 777 3.058155 TGCTGAGAGTTCGTCAGTTCTAC 60.058 47.826 2.30 0.00 43.00 2.59
767 780 2.055100 GTGCTGAGAGTTCGTCAGTTC 58.945 52.381 2.30 0.00 43.00 3.01
810 823 1.613437 CGCATGGGAGGACTTTTGTTT 59.387 47.619 3.11 0.00 0.00 2.83
815 828 2.044946 GGCGCATGGGAGGACTTT 60.045 61.111 14.90 0.00 0.00 2.66
848 861 2.119801 TCTTTGCCTGGATGCTCTTC 57.880 50.000 0.00 0.00 0.00 2.87
849 862 2.592102 TTCTTTGCCTGGATGCTCTT 57.408 45.000 0.00 0.00 0.00 2.85
851 864 2.094338 CCTTTTCTTTGCCTGGATGCTC 60.094 50.000 0.00 0.00 0.00 4.26
856 869 1.780309 TCCTCCTTTTCTTTGCCTGGA 59.220 47.619 0.00 0.00 0.00 3.86
906 920 1.745653 GAGCCGAGATTCCCCAAAAAG 59.254 52.381 0.00 0.00 0.00 2.27
911 925 2.768344 GGGAGCCGAGATTCCCCA 60.768 66.667 0.00 0.00 46.15 4.96
1351 1365 1.001181 CACCGGAACCGAGGAAGTTAA 59.999 52.381 9.46 0.00 42.83 2.01
1367 1381 1.153353 ACGAACAATAGCCAACACCG 58.847 50.000 0.00 0.00 0.00 4.94
1480 1496 1.154225 GCCGAACACGAAGCAATGG 60.154 57.895 0.00 0.00 0.00 3.16
1623 1716 5.955488 TCGACAAAGAATCGATCTCTCTTT 58.045 37.500 14.88 14.88 43.38 2.52
1709 1806 5.869753 ATCGACAAAGTTCCAATCTCTTG 57.130 39.130 0.00 0.00 0.00 3.02
1782 1884 1.153168 GAAAGCTCCCTATGCCGCA 60.153 57.895 0.00 0.00 0.00 5.69
1842 1948 4.400884 TGTTGTTGAACACTAAACTGGCAT 59.599 37.500 0.00 0.00 37.15 4.40
1843 1949 3.759086 TGTTGTTGAACACTAAACTGGCA 59.241 39.130 0.00 0.00 37.15 4.92
1854 1960 2.358582 CCTGCACTCATGTTGTTGAACA 59.641 45.455 0.00 0.00 46.13 3.18
1871 1977 2.162408 GGTTCAATACTCTGCAACCTGC 59.838 50.000 0.00 0.00 45.29 4.85
1938 2044 5.535406 GGGCAATACTACTTAGAGCACTCTA 59.465 44.000 3.22 3.22 40.93 2.43
1940 2046 4.342665 AGGGCAATACTACTTAGAGCACTC 59.657 45.833 0.00 0.00 25.52 3.51
1941 2047 4.290942 AGGGCAATACTACTTAGAGCACT 58.709 43.478 0.00 0.00 0.00 4.40
1942 2048 4.674281 AGGGCAATACTACTTAGAGCAC 57.326 45.455 0.00 0.00 0.00 4.40
1943 2049 6.239600 CCATAAGGGCAATACTACTTAGAGCA 60.240 42.308 0.00 0.00 0.00 4.26
1944 2050 6.166982 CCATAAGGGCAATACTACTTAGAGC 58.833 44.000 0.00 0.00 0.00 4.09
1945 2051 7.304497 ACCATAAGGGCAATACTACTTAGAG 57.696 40.000 0.00 0.00 42.05 2.43
1946 2052 8.786710 TTACCATAAGGGCAATACTACTTAGA 57.213 34.615 0.00 0.00 42.05 2.10
1976 2084 8.408601 TGTTTTAACGTCACTTCTACTACTTCT 58.591 33.333 0.00 0.00 0.00 2.85
1987 2095 5.702209 ACCGGATATTGTTTTAACGTCACTT 59.298 36.000 9.46 0.00 0.00 3.16
2002 2110 9.978044 GTATACTTTTTCTACTGACCGGATATT 57.022 33.333 9.46 0.00 0.00 1.28
2173 2301 2.683933 CGGTAGACTGGTGGCCCT 60.684 66.667 0.00 0.00 0.00 5.19
2174 2302 4.468689 GCGGTAGACTGGTGGCCC 62.469 72.222 0.00 0.00 0.00 5.80
2273 2401 3.217626 GGGTATCTAAGCAGCAAAGCAT 58.782 45.455 0.00 0.00 36.85 3.79
2302 2430 1.135053 TCGCAAATGCATGAACATGGG 60.135 47.619 15.15 3.89 42.21 4.00
3482 3659 3.327464 TGTCAACAGGAATCACATCCAGA 59.673 43.478 0.00 0.00 42.27 3.86
3688 3865 4.098501 AGAAGAACAAAGGGAGCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
3690 3867 3.381272 CAGAAGAACAAAGGGAGCAAACA 59.619 43.478 0.00 0.00 0.00 2.83
4299 4476 9.236006 GTGCTGTTTTGATATATCCTTCCATAT 57.764 33.333 10.25 0.00 0.00 1.78
4323 4500 1.003355 AAGTGGTCTGGCATCCGTG 60.003 57.895 0.00 0.00 0.00 4.94
4340 4517 5.376625 ACTACAGCACAGGAGAAATTTCAA 58.623 37.500 19.99 0.00 0.00 2.69
4357 4534 6.814043 TCAATCAGAATCCAGATGACTACAG 58.186 40.000 0.00 0.00 0.00 2.74
4385 4562 5.538053 TCTGGCAAATTCAACAAAGATGGTA 59.462 36.000 0.00 0.00 0.00 3.25
4453 4630 5.513376 TCAATGCGAATATCATGCTGAAAC 58.487 37.500 0.00 0.00 0.00 2.78
4469 4646 6.801377 TGACAAGCTAAAACTAATTCAATGCG 59.199 34.615 0.00 0.00 0.00 4.73
4518 4695 1.611491 CCGTACTTGGGCAACACAAAT 59.389 47.619 0.00 0.00 39.74 2.32
4582 4759 4.668576 CAACTCATGTTGCGTTCAGTAT 57.331 40.909 0.00 0.00 45.57 2.12
4646 6417 6.183360 CCATAAGGGACATGCTAAAGAAGTTG 60.183 42.308 0.00 0.00 40.01 3.16
4664 6435 6.710278 ACAAAATCAAAACATCCCCATAAGG 58.290 36.000 0.00 0.00 0.00 2.69
4666 6437 7.443575 CACAACAAAATCAAAACATCCCCATAA 59.556 33.333 0.00 0.00 0.00 1.90
4858 6631 4.762289 ATGGTACCAGAAGCTAAAGAGG 57.238 45.455 21.41 0.00 0.00 3.69
4913 6714 0.889994 GTGCTGCCATTGATCACCAA 59.110 50.000 0.00 0.00 39.41 3.67
4982 6783 6.534475 TGTAGATATTGTCTAACCACGGTT 57.466 37.500 6.70 6.70 41.00 4.44
5030 6831 8.723942 AAACAAAGACAGGATTAGTGCTATAG 57.276 34.615 0.00 0.00 0.00 1.31
5100 6905 7.200434 TCTTAGATGGGCTAGAAAATGACTT 57.800 36.000 0.00 0.00 0.00 3.01
5167 9450 8.365647 AGTCGATTAGTAACTTCCAGAAAGAAA 58.634 33.333 0.00 0.00 38.44 2.52
5211 9494 3.827876 TCATGATGCTGACAACACCAATT 59.172 39.130 0.00 0.00 30.62 2.32
5463 9845 6.223852 ACAACACCACTCTATCAAAGTACAG 58.776 40.000 0.00 0.00 0.00 2.74
5646 10031 2.610727 GCACTAGAAGAACGCTGAAGGT 60.611 50.000 0.00 0.00 0.00 3.50
5655 10040 3.299340 TTCTCGGTGCACTAGAAGAAC 57.701 47.619 22.90 3.80 0.00 3.01
5756 10143 2.484264 CTCGAGTTCACCATGGAAAACC 59.516 50.000 21.47 13.55 0.00 3.27
5766 10153 2.540101 CGCATAATTCCTCGAGTTCACC 59.460 50.000 12.31 0.00 0.00 4.02
5775 10165 3.206150 TCTTGCCTTCGCATAATTCCTC 58.794 45.455 0.00 0.00 46.67 3.71
5793 10183 1.001633 ACCAACCGCTAACACGATCTT 59.998 47.619 0.00 0.00 34.06 2.40
5819 10209 2.203337 TTGCGTCCCTTGCAAGCT 60.203 55.556 21.43 0.00 46.62 3.74
5978 10475 8.836413 TCTTTTTACTCCGCATATTAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
6023 10520 4.978580 GCTTATAGCTGTAAAAATGGCTGC 59.021 41.667 4.38 0.00 38.45 5.25
6048 10547 9.888878 CTTTGAATATAATGTACTTGCTGATGG 57.111 33.333 0.00 0.00 0.00 3.51
6076 10575 2.735134 GACGTCCATTGGAGTGTGTTAC 59.265 50.000 13.72 0.00 29.39 2.50
6089 10621 2.623889 CGGAGAGGATAAAGACGTCCAT 59.376 50.000 13.01 3.72 36.96 3.41
6126 10658 3.385384 CTCTGAGGTGCTCCGCCA 61.385 66.667 6.08 4.66 36.32 5.69
6202 10734 1.727857 CGCCCGAATTACAACAAGCAC 60.728 52.381 0.00 0.00 0.00 4.40
6206 10738 0.238817 GTGCGCCCGAATTACAACAA 59.761 50.000 4.18 0.00 0.00 2.83
6227 10759 2.956799 TTCAAGCAGACGGGCAGCAA 62.957 55.000 0.00 0.00 35.83 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.