Multiple sequence alignment - TraesCS3D01G310400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310400 chr3D 100.000 3226 0 0 1 3226 424654384 424657609 0.000000e+00 5958.0
1 TraesCS3D01G310400 chr3D 93.333 45 3 0 223 267 606793259 606793303 2.080000e-07 67.6
2 TraesCS3D01G310400 chr3A 90.196 1632 119 21 735 2334 564347010 564345388 0.000000e+00 2089.0
3 TraesCS3D01G310400 chr3A 93.954 612 28 6 2606 3213 564345139 564344533 0.000000e+00 917.0
4 TraesCS3D01G310400 chr3A 88.000 75 7 2 2321 2393 213779638 213779712 1.590000e-13 87.9
5 TraesCS3D01G310400 chr3A 84.286 70 8 3 199 267 738952656 738952723 7.470000e-07 65.8
6 TraesCS3D01G310400 chr3A 80.000 85 14 1 93 174 744619874 744619958 3.480000e-05 60.2
7 TraesCS3D01G310400 chr3B 92.801 1278 83 7 1000 2268 554648473 554649750 0.000000e+00 1842.0
8 TraesCS3D01G310400 chr3B 92.958 710 37 7 2511 3214 554697152 554697854 0.000000e+00 1022.0
9 TraesCS3D01G310400 chr6D 90.587 1328 110 11 940 2260 457010525 457011844 0.000000e+00 1746.0
10 TraesCS3D01G310400 chr6D 90.034 582 31 5 2493 3071 457064831 457065388 0.000000e+00 728.0
11 TraesCS3D01G310400 chr6D 88.382 241 24 3 2254 2491 457064485 457064724 1.460000e-73 287.0
12 TraesCS3D01G310400 chr6D 93.151 146 8 2 3054 3198 457065467 457065611 2.520000e-51 213.0
13 TraesCS3D01G310400 chr6D 92.000 100 7 1 351 449 58638081 58638180 4.340000e-29 139.0
14 TraesCS3D01G310400 chr5D 91.031 1271 98 6 999 2265 547262167 547260909 0.000000e+00 1701.0
15 TraesCS3D01G310400 chr5D 92.051 390 22 7 2838 3226 547260837 547260456 1.020000e-149 540.0
16 TraesCS3D01G310400 chr6B 91.837 98 8 0 352 449 219011215 219011118 1.560000e-28 137.0
17 TraesCS3D01G310400 chr6B 93.478 92 6 0 352 443 226028040 226028131 1.560000e-28 137.0
18 TraesCS3D01G310400 chr6A 91.837 98 8 0 352 449 587701550 587701647 1.560000e-28 137.0
19 TraesCS3D01G310400 chr6A 91.000 100 8 1 351 449 23201516 23201615 2.020000e-27 134.0
20 TraesCS3D01G310400 chr5B 91.837 98 8 0 352 449 694231434 694231337 1.560000e-28 137.0
21 TraesCS3D01G310400 chr5A 91.837 98 8 0 352 449 41982983 41983080 1.560000e-28 137.0
22 TraesCS3D01G310400 chr1B 91.837 98 8 0 352 449 629688102 629688005 1.560000e-28 137.0
23 TraesCS3D01G310400 chr7B 90.909 99 9 0 351 449 450577108 450577010 2.020000e-27 134.0
24 TraesCS3D01G310400 chr2B 92.188 64 2 3 2333 2393 204264222 204264159 1.590000e-13 87.9
25 TraesCS3D01G310400 chr2B 95.122 41 2 0 223 263 746054930 746054970 7.470000e-07 65.8
26 TraesCS3D01G310400 chr2A 88.158 76 5 4 2321 2393 298362927 298362853 1.590000e-13 87.9
27 TraesCS3D01G310400 chr2D 86.667 75 8 1 2321 2393 39404524 39404598 7.420000e-12 82.4
28 TraesCS3D01G310400 chr1A 86.842 76 7 3 2318 2390 583362017 583362092 7.420000e-12 82.4
29 TraesCS3D01G310400 chr4B 97.059 34 1 0 316 349 329049652 329049685 1.250000e-04 58.4
30 TraesCS3D01G310400 chr4B 94.595 37 2 0 316 352 636167588 636167552 1.250000e-04 58.4
31 TraesCS3D01G310400 chr1D 97.059 34 1 0 316 349 398486977 398486944 1.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310400 chr3D 424654384 424657609 3225 False 5958.000000 5958 100.000000 1 3226 1 chr3D.!!$F1 3225
1 TraesCS3D01G310400 chr3A 564344533 564347010 2477 True 1503.000000 2089 92.075000 735 3213 2 chr3A.!!$R1 2478
2 TraesCS3D01G310400 chr3B 554648473 554649750 1277 False 1842.000000 1842 92.801000 1000 2268 1 chr3B.!!$F1 1268
3 TraesCS3D01G310400 chr3B 554697152 554697854 702 False 1022.000000 1022 92.958000 2511 3214 1 chr3B.!!$F2 703
4 TraesCS3D01G310400 chr6D 457010525 457011844 1319 False 1746.000000 1746 90.587000 940 2260 1 chr6D.!!$F2 1320
5 TraesCS3D01G310400 chr6D 457064485 457065611 1126 False 409.333333 728 90.522333 2254 3198 3 chr6D.!!$F3 944
6 TraesCS3D01G310400 chr5D 547260456 547262167 1711 True 1120.500000 1701 91.541000 999 3226 2 chr5D.!!$R1 2227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 475 0.104855 TCCAATTCGGCTCTCGGATG 59.895 55.0 0.0 0.0 37.13 3.51 F
1056 1088 0.039764 TCTTCCTTCTCCTCCGAGCA 59.960 55.0 0.0 0.0 35.94 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1694 0.602638 GCATCACCTTGTCGTGGTCA 60.603 55.0 0.0 0.0 35.28 4.02 R
2949 3149 0.180406 AGAGTGCGGAAACAACACCT 59.820 50.0 0.0 0.0 37.68 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.706691 AAAAGAGTAAGAAAACTGACATATCGA 57.293 29.630 0.00 0.00 0.00 3.59
42 43 8.690680 AAGAGTAAGAAAACTGACATATCGAC 57.309 34.615 0.00 0.00 0.00 4.20
43 44 7.259161 AGAGTAAGAAAACTGACATATCGACC 58.741 38.462 0.00 0.00 0.00 4.79
44 45 6.931838 AGTAAGAAAACTGACATATCGACCA 58.068 36.000 0.00 0.00 0.00 4.02
45 46 6.812160 AGTAAGAAAACTGACATATCGACCAC 59.188 38.462 0.00 0.00 0.00 4.16
46 47 5.147330 AGAAAACTGACATATCGACCACA 57.853 39.130 0.00 0.00 0.00 4.17
47 48 5.171476 AGAAAACTGACATATCGACCACAG 58.829 41.667 0.00 0.00 0.00 3.66
48 49 4.537135 AAACTGACATATCGACCACAGT 57.463 40.909 0.00 0.00 39.70 3.55
49 50 5.654603 AAACTGACATATCGACCACAGTA 57.345 39.130 11.05 0.00 37.57 2.74
50 51 5.654603 AACTGACATATCGACCACAGTAA 57.345 39.130 11.05 0.00 37.57 2.24
51 52 5.654603 ACTGACATATCGACCACAGTAAA 57.345 39.130 0.00 0.00 36.94 2.01
52 53 5.651530 ACTGACATATCGACCACAGTAAAG 58.348 41.667 0.00 0.86 36.94 1.85
53 54 5.185249 ACTGACATATCGACCACAGTAAAGT 59.815 40.000 0.00 1.32 36.94 2.66
54 55 5.647589 TGACATATCGACCACAGTAAAGTC 58.352 41.667 0.00 0.00 0.00 3.01
55 56 5.007385 ACATATCGACCACAGTAAAGTCC 57.993 43.478 0.00 0.00 0.00 3.85
56 57 4.710375 ACATATCGACCACAGTAAAGTCCT 59.290 41.667 0.00 0.00 0.00 3.85
57 58 5.889853 ACATATCGACCACAGTAAAGTCCTA 59.110 40.000 0.00 0.00 0.00 2.94
58 59 6.550108 ACATATCGACCACAGTAAAGTCCTAT 59.450 38.462 0.00 0.00 0.00 2.57
59 60 7.722728 ACATATCGACCACAGTAAAGTCCTATA 59.277 37.037 0.00 0.00 0.00 1.31
60 61 8.573885 CATATCGACCACAGTAAAGTCCTATAA 58.426 37.037 0.00 0.00 0.00 0.98
61 62 6.446781 TCGACCACAGTAAAGTCCTATAAG 57.553 41.667 0.00 0.00 0.00 1.73
62 63 6.182627 TCGACCACAGTAAAGTCCTATAAGA 58.817 40.000 0.00 0.00 0.00 2.10
63 64 6.094603 TCGACCACAGTAAAGTCCTATAAGAC 59.905 42.308 0.00 0.00 37.01 3.01
64 65 6.541934 ACCACAGTAAAGTCCTATAAGACC 57.458 41.667 0.00 0.00 37.49 3.85
65 66 5.126707 ACCACAGTAAAGTCCTATAAGACCG 59.873 44.000 0.00 0.00 37.49 4.79
66 67 5.359009 CCACAGTAAAGTCCTATAAGACCGA 59.641 44.000 0.00 0.00 37.49 4.69
67 68 6.264088 CACAGTAAAGTCCTATAAGACCGAC 58.736 44.000 0.00 0.00 37.49 4.79
68 69 5.948162 ACAGTAAAGTCCTATAAGACCGACA 59.052 40.000 0.00 0.00 37.49 4.35
69 70 6.127786 ACAGTAAAGTCCTATAAGACCGACAC 60.128 42.308 0.00 0.00 37.49 3.67
70 71 4.367386 AAAGTCCTATAAGACCGACACG 57.633 45.455 0.00 0.00 37.49 4.49
71 72 3.272574 AGTCCTATAAGACCGACACGA 57.727 47.619 0.00 0.00 37.49 4.35
72 73 3.818180 AGTCCTATAAGACCGACACGAT 58.182 45.455 0.00 0.00 37.49 3.73
73 74 4.965814 AGTCCTATAAGACCGACACGATA 58.034 43.478 0.00 0.00 37.49 2.92
74 75 4.754114 AGTCCTATAAGACCGACACGATAC 59.246 45.833 0.00 0.00 37.49 2.24
75 76 4.067896 TCCTATAAGACCGACACGATACC 58.932 47.826 0.00 0.00 0.00 2.73
76 77 4.070716 CCTATAAGACCGACACGATACCT 58.929 47.826 0.00 0.00 0.00 3.08
77 78 5.012046 TCCTATAAGACCGACACGATACCTA 59.988 44.000 0.00 0.00 0.00 3.08
78 79 5.879223 CCTATAAGACCGACACGATACCTAT 59.121 44.000 0.00 0.00 0.00 2.57
79 80 3.984508 AAGACCGACACGATACCTATG 57.015 47.619 0.00 0.00 0.00 2.23
80 81 3.204306 AGACCGACACGATACCTATGA 57.796 47.619 0.00 0.00 0.00 2.15
81 82 2.877168 AGACCGACACGATACCTATGAC 59.123 50.000 0.00 0.00 0.00 3.06
82 83 2.615447 GACCGACACGATACCTATGACA 59.385 50.000 0.00 0.00 0.00 3.58
83 84 3.018856 ACCGACACGATACCTATGACAA 58.981 45.455 0.00 0.00 0.00 3.18
84 85 3.444742 ACCGACACGATACCTATGACAAA 59.555 43.478 0.00 0.00 0.00 2.83
85 86 4.042398 CCGACACGATACCTATGACAAAG 58.958 47.826 0.00 0.00 0.00 2.77
86 87 4.042398 CGACACGATACCTATGACAAAGG 58.958 47.826 0.00 0.00 40.20 3.11
87 88 4.201980 CGACACGATACCTATGACAAAGGA 60.202 45.833 0.00 0.00 37.57 3.36
88 89 5.507482 CGACACGATACCTATGACAAAGGAT 60.507 44.000 0.00 0.00 37.57 3.24
89 90 6.235231 ACACGATACCTATGACAAAGGATT 57.765 37.500 0.00 0.00 37.57 3.01
90 91 6.049149 ACACGATACCTATGACAAAGGATTG 58.951 40.000 0.00 0.00 42.46 2.67
91 92 6.127168 ACACGATACCTATGACAAAGGATTGA 60.127 38.462 0.00 0.00 38.94 2.57
92 93 6.761242 CACGATACCTATGACAAAGGATTGAA 59.239 38.462 0.00 0.00 38.94 2.69
93 94 6.986817 ACGATACCTATGACAAAGGATTGAAG 59.013 38.462 0.00 0.00 38.94 3.02
94 95 7.147724 ACGATACCTATGACAAAGGATTGAAGA 60.148 37.037 0.00 0.00 38.94 2.87
95 96 7.875041 CGATACCTATGACAAAGGATTGAAGAT 59.125 37.037 0.00 0.00 38.94 2.40
96 97 9.566432 GATACCTATGACAAAGGATTGAAGATT 57.434 33.333 0.00 0.00 38.94 2.40
99 100 9.347240 ACCTATGACAAAGGATTGAAGATTATG 57.653 33.333 0.00 0.00 38.94 1.90
100 101 8.295288 CCTATGACAAAGGATTGAAGATTATGC 58.705 37.037 0.00 0.00 38.94 3.14
101 102 7.893124 ATGACAAAGGATTGAAGATTATGCT 57.107 32.000 0.00 0.00 38.94 3.79
102 103 8.985315 ATGACAAAGGATTGAAGATTATGCTA 57.015 30.769 0.00 0.00 38.94 3.49
103 104 8.985315 TGACAAAGGATTGAAGATTATGCTAT 57.015 30.769 0.00 0.00 38.94 2.97
104 105 9.060347 TGACAAAGGATTGAAGATTATGCTATC 57.940 33.333 0.00 0.00 38.94 2.08
105 106 8.985315 ACAAAGGATTGAAGATTATGCTATCA 57.015 30.769 0.00 0.00 38.94 2.15
106 107 8.844244 ACAAAGGATTGAAGATTATGCTATCAC 58.156 33.333 0.00 0.00 38.94 3.06
107 108 9.064706 CAAAGGATTGAAGATTATGCTATCACT 57.935 33.333 0.00 0.00 38.94 3.41
108 109 8.845413 AAGGATTGAAGATTATGCTATCACTC 57.155 34.615 0.00 0.00 0.00 3.51
109 110 7.971201 AGGATTGAAGATTATGCTATCACTCA 58.029 34.615 0.00 0.00 0.00 3.41
110 111 8.604184 AGGATTGAAGATTATGCTATCACTCAT 58.396 33.333 0.00 0.00 0.00 2.90
111 112 8.666573 GGATTGAAGATTATGCTATCACTCATG 58.333 37.037 0.00 0.00 0.00 3.07
112 113 9.217278 GATTGAAGATTATGCTATCACTCATGT 57.783 33.333 0.00 0.00 0.00 3.21
113 114 8.969260 TTGAAGATTATGCTATCACTCATGTT 57.031 30.769 0.00 0.00 0.00 2.71
137 138 4.439253 AAAAACTCTCTAACCACCTGCT 57.561 40.909 0.00 0.00 0.00 4.24
138 139 4.439253 AAAACTCTCTAACCACCTGCTT 57.561 40.909 0.00 0.00 0.00 3.91
139 140 4.439253 AAACTCTCTAACCACCTGCTTT 57.561 40.909 0.00 0.00 0.00 3.51
140 141 5.562298 AAACTCTCTAACCACCTGCTTTA 57.438 39.130 0.00 0.00 0.00 1.85
141 142 5.562298 AACTCTCTAACCACCTGCTTTAA 57.438 39.130 0.00 0.00 0.00 1.52
142 143 4.895961 ACTCTCTAACCACCTGCTTTAAC 58.104 43.478 0.00 0.00 0.00 2.01
143 144 4.254492 CTCTCTAACCACCTGCTTTAACC 58.746 47.826 0.00 0.00 0.00 2.85
144 145 3.649023 TCTCTAACCACCTGCTTTAACCA 59.351 43.478 0.00 0.00 0.00 3.67
145 146 4.288626 TCTCTAACCACCTGCTTTAACCAT 59.711 41.667 0.00 0.00 0.00 3.55
146 147 4.331968 TCTAACCACCTGCTTTAACCATG 58.668 43.478 0.00 0.00 0.00 3.66
147 148 2.675658 ACCACCTGCTTTAACCATGT 57.324 45.000 0.00 0.00 0.00 3.21
148 149 3.799432 ACCACCTGCTTTAACCATGTA 57.201 42.857 0.00 0.00 0.00 2.29
149 150 3.418047 ACCACCTGCTTTAACCATGTAC 58.582 45.455 0.00 0.00 0.00 2.90
150 151 3.181438 ACCACCTGCTTTAACCATGTACA 60.181 43.478 0.00 0.00 0.00 2.90
151 152 3.190535 CCACCTGCTTTAACCATGTACAC 59.809 47.826 0.00 0.00 0.00 2.90
152 153 3.818210 CACCTGCTTTAACCATGTACACA 59.182 43.478 0.00 0.00 0.00 3.72
153 154 3.818773 ACCTGCTTTAACCATGTACACAC 59.181 43.478 0.00 0.00 0.00 3.82
154 155 3.190535 CCTGCTTTAACCATGTACACACC 59.809 47.826 0.00 0.00 0.00 4.16
155 156 2.809119 TGCTTTAACCATGTACACACCG 59.191 45.455 0.00 0.00 0.00 4.94
156 157 2.413634 GCTTTAACCATGTACACACCGC 60.414 50.000 0.00 0.00 0.00 5.68
157 158 1.810959 TTAACCATGTACACACCGCC 58.189 50.000 0.00 0.00 0.00 6.13
158 159 0.978151 TAACCATGTACACACCGCCT 59.022 50.000 0.00 0.00 0.00 5.52
159 160 0.109723 AACCATGTACACACCGCCTT 59.890 50.000 0.00 0.00 0.00 4.35
160 161 0.321298 ACCATGTACACACCGCCTTC 60.321 55.000 0.00 0.00 0.00 3.46
161 162 0.321210 CCATGTACACACCGCCTTCA 60.321 55.000 0.00 0.00 0.00 3.02
162 163 1.518325 CATGTACACACCGCCTTCAA 58.482 50.000 0.00 0.00 0.00 2.69
163 164 1.196808 CATGTACACACCGCCTTCAAC 59.803 52.381 0.00 0.00 0.00 3.18
164 165 0.178301 TGTACACACCGCCTTCAACA 59.822 50.000 0.00 0.00 0.00 3.33
165 166 0.865769 GTACACACCGCCTTCAACAG 59.134 55.000 0.00 0.00 0.00 3.16
166 167 0.882927 TACACACCGCCTTCAACAGC 60.883 55.000 0.00 0.00 0.00 4.40
179 180 1.005394 AACAGCGGTTGGTACTCCG 60.005 57.895 16.04 16.04 45.32 4.63
183 184 4.800355 CGGTTGGTACTCCGCTAC 57.200 61.111 10.46 0.00 39.08 3.58
184 185 1.140375 CGGTTGGTACTCCGCTACC 59.860 63.158 10.46 2.21 39.08 3.18
185 186 1.318158 CGGTTGGTACTCCGCTACCT 61.318 60.000 10.46 0.00 39.08 3.08
186 187 1.767759 GGTTGGTACTCCGCTACCTA 58.232 55.000 1.98 0.00 37.63 3.08
187 188 2.314246 GGTTGGTACTCCGCTACCTAT 58.686 52.381 1.98 0.00 37.63 2.57
188 189 3.490348 GGTTGGTACTCCGCTACCTATA 58.510 50.000 1.98 0.00 37.63 1.31
189 190 3.891366 GGTTGGTACTCCGCTACCTATAA 59.109 47.826 1.98 0.00 37.63 0.98
190 191 4.261783 GGTTGGTACTCCGCTACCTATAAC 60.262 50.000 1.98 0.00 37.63 1.89
191 192 4.169059 TGGTACTCCGCTACCTATAACA 57.831 45.455 1.98 0.00 37.63 2.41
192 193 4.535781 TGGTACTCCGCTACCTATAACAA 58.464 43.478 1.98 0.00 37.63 2.83
193 194 4.955450 TGGTACTCCGCTACCTATAACAAA 59.045 41.667 1.98 0.00 37.63 2.83
194 195 5.421693 TGGTACTCCGCTACCTATAACAAAA 59.578 40.000 1.98 0.00 37.63 2.44
195 196 6.070881 TGGTACTCCGCTACCTATAACAAAAA 60.071 38.462 1.98 0.00 37.63 1.94
221 222 6.993786 AATAAGCTACAAAAGAGAAGAGCC 57.006 37.500 0.00 0.00 0.00 4.70
222 223 4.632327 AAGCTACAAAAGAGAAGAGCCT 57.368 40.909 0.00 0.00 0.00 4.58
223 224 4.632327 AGCTACAAAAGAGAAGAGCCTT 57.368 40.909 0.00 0.00 0.00 4.35
224 225 4.979335 AGCTACAAAAGAGAAGAGCCTTT 58.021 39.130 0.00 0.00 34.39 3.11
225 226 5.380900 AGCTACAAAAGAGAAGAGCCTTTT 58.619 37.500 0.00 0.00 41.64 2.27
226 227 5.830457 AGCTACAAAAGAGAAGAGCCTTTTT 59.170 36.000 0.00 0.00 39.69 1.94
227 228 6.016693 AGCTACAAAAGAGAAGAGCCTTTTTC 60.017 38.462 0.00 0.00 39.69 2.29
228 229 6.238759 GCTACAAAAGAGAAGAGCCTTTTTCA 60.239 38.462 0.00 0.00 39.69 2.69
229 230 6.721704 ACAAAAGAGAAGAGCCTTTTTCAT 57.278 33.333 0.00 0.00 39.69 2.57
230 231 7.117285 ACAAAAGAGAAGAGCCTTTTTCATT 57.883 32.000 0.00 0.00 39.69 2.57
231 232 8.237811 ACAAAAGAGAAGAGCCTTTTTCATTA 57.762 30.769 0.00 0.00 39.69 1.90
232 233 8.695456 ACAAAAGAGAAGAGCCTTTTTCATTAA 58.305 29.630 0.00 0.00 39.69 1.40
233 234 9.533253 CAAAAGAGAAGAGCCTTTTTCATTAAA 57.467 29.630 0.00 0.00 39.69 1.52
234 235 9.755804 AAAAGAGAAGAGCCTTTTTCATTAAAG 57.244 29.630 0.00 0.00 38.91 1.85
235 236 8.697507 AAGAGAAGAGCCTTTTTCATTAAAGA 57.302 30.769 0.00 0.00 37.31 2.52
236 237 8.105097 AGAGAAGAGCCTTTTTCATTAAAGAC 57.895 34.615 0.00 0.00 37.31 3.01
237 238 7.941790 AGAGAAGAGCCTTTTTCATTAAAGACT 59.058 33.333 0.00 0.00 37.31 3.24
238 239 9.220767 GAGAAGAGCCTTTTTCATTAAAGACTA 57.779 33.333 0.00 0.00 37.31 2.59
239 240 9.574516 AGAAGAGCCTTTTTCATTAAAGACTAA 57.425 29.630 0.00 0.00 37.31 2.24
257 258 9.905713 AAAGACTAAATCATTTCTACATAGCCA 57.094 29.630 0.00 0.00 0.00 4.75
258 259 9.905713 AAGACTAAATCATTTCTACATAGCCAA 57.094 29.630 0.00 0.00 0.00 4.52
259 260 9.905713 AGACTAAATCATTTCTACATAGCCAAA 57.094 29.630 0.00 0.00 0.00 3.28
261 262 8.624776 ACTAAATCATTTCTACATAGCCAAAGC 58.375 33.333 0.00 0.00 40.32 3.51
262 263 6.396829 AATCATTTCTACATAGCCAAAGCC 57.603 37.500 0.00 0.00 41.25 4.35
263 264 4.854173 TCATTTCTACATAGCCAAAGCCA 58.146 39.130 0.00 0.00 41.25 4.75
264 265 4.640201 TCATTTCTACATAGCCAAAGCCAC 59.360 41.667 0.00 0.00 41.25 5.01
265 266 2.710096 TCTACATAGCCAAAGCCACC 57.290 50.000 0.00 0.00 41.25 4.61
266 267 1.912731 TCTACATAGCCAAAGCCACCA 59.087 47.619 0.00 0.00 41.25 4.17
267 268 2.509548 TCTACATAGCCAAAGCCACCAT 59.490 45.455 0.00 0.00 41.25 3.55
268 269 3.714280 TCTACATAGCCAAAGCCACCATA 59.286 43.478 0.00 0.00 41.25 2.74
269 270 2.936202 ACATAGCCAAAGCCACCATAG 58.064 47.619 0.00 0.00 41.25 2.23
270 271 2.242196 ACATAGCCAAAGCCACCATAGT 59.758 45.455 0.00 0.00 41.25 2.12
271 272 2.418368 TAGCCAAAGCCACCATAGTG 57.582 50.000 0.00 0.00 44.12 2.74
272 273 0.405585 AGCCAAAGCCACCATAGTGT 59.594 50.000 0.00 0.00 42.88 3.55
273 274 1.203050 AGCCAAAGCCACCATAGTGTT 60.203 47.619 0.00 0.00 42.88 3.32
274 275 1.618343 GCCAAAGCCACCATAGTGTTT 59.382 47.619 0.00 0.00 42.88 2.83
275 276 2.037121 GCCAAAGCCACCATAGTGTTTT 59.963 45.455 0.00 0.00 42.88 2.43
276 277 3.257127 GCCAAAGCCACCATAGTGTTTTA 59.743 43.478 0.00 0.00 42.88 1.52
277 278 4.262249 GCCAAAGCCACCATAGTGTTTTAA 60.262 41.667 0.00 0.00 42.88 1.52
278 279 5.740513 GCCAAAGCCACCATAGTGTTTTAAA 60.741 40.000 0.00 0.00 42.88 1.52
279 280 6.463360 CCAAAGCCACCATAGTGTTTTAAAT 58.537 36.000 0.00 0.00 42.88 1.40
280 281 6.934083 CCAAAGCCACCATAGTGTTTTAAATT 59.066 34.615 0.00 0.00 42.88 1.82
281 282 7.443879 CCAAAGCCACCATAGTGTTTTAAATTT 59.556 33.333 0.00 0.00 42.88 1.82
282 283 9.482627 CAAAGCCACCATAGTGTTTTAAATTTA 57.517 29.630 0.00 0.00 42.88 1.40
305 306 9.619316 TTTATTTGAGATACCGTTCAACAAATG 57.381 29.630 0.00 0.00 36.52 2.32
306 307 6.869315 TTTGAGATACCGTTCAACAAATGA 57.131 33.333 0.00 0.00 33.36 2.57
307 308 7.447374 TTTGAGATACCGTTCAACAAATGAT 57.553 32.000 0.00 0.00 38.03 2.45
308 309 6.662414 TGAGATACCGTTCAACAAATGATC 57.338 37.500 0.00 0.00 38.03 2.92
309 310 6.169800 TGAGATACCGTTCAACAAATGATCA 58.830 36.000 0.00 0.00 38.03 2.92
310 311 6.652900 TGAGATACCGTTCAACAAATGATCAA 59.347 34.615 0.00 0.00 38.03 2.57
311 312 7.174080 TGAGATACCGTTCAACAAATGATCAAA 59.826 33.333 0.00 0.00 38.03 2.69
312 313 7.881142 AGATACCGTTCAACAAATGATCAAAA 58.119 30.769 0.00 0.00 38.03 2.44
313 314 8.356657 AGATACCGTTCAACAAATGATCAAAAA 58.643 29.630 0.00 0.00 38.03 1.94
314 315 9.139174 GATACCGTTCAACAAATGATCAAAAAT 57.861 29.630 0.00 0.00 38.03 1.82
317 318 9.487790 ACCGTTCAACAAATGATCAAAAATATT 57.512 25.926 0.00 0.00 38.03 1.28
318 319 9.743937 CCGTTCAACAAATGATCAAAAATATTG 57.256 29.630 0.00 0.68 38.03 1.90
344 345 4.946784 AATAGGTGTTTGATTGTCTCGC 57.053 40.909 0.00 0.00 0.00 5.03
345 346 1.523758 AGGTGTTTGATTGTCTCGCC 58.476 50.000 0.00 0.00 0.00 5.54
346 347 1.202758 AGGTGTTTGATTGTCTCGCCA 60.203 47.619 0.00 0.00 0.00 5.69
347 348 1.812571 GGTGTTTGATTGTCTCGCCAT 59.187 47.619 0.00 0.00 0.00 4.40
348 349 2.414559 GGTGTTTGATTGTCTCGCCATG 60.415 50.000 0.00 0.00 0.00 3.66
349 350 1.199789 TGTTTGATTGTCTCGCCATGC 59.800 47.619 0.00 0.00 0.00 4.06
350 351 1.199789 GTTTGATTGTCTCGCCATGCA 59.800 47.619 0.00 0.00 0.00 3.96
351 352 1.753930 TTGATTGTCTCGCCATGCAT 58.246 45.000 0.00 0.00 0.00 3.96
352 353 1.753930 TGATTGTCTCGCCATGCATT 58.246 45.000 0.00 0.00 0.00 3.56
353 354 1.402613 TGATTGTCTCGCCATGCATTG 59.597 47.619 0.00 0.00 0.00 2.82
354 355 1.672363 GATTGTCTCGCCATGCATTGA 59.328 47.619 1.13 0.00 0.00 2.57
355 356 0.804364 TTGTCTCGCCATGCATTGAC 59.196 50.000 1.13 4.61 0.00 3.18
356 357 1.349627 GTCTCGCCATGCATTGACG 59.650 57.895 1.13 4.23 0.00 4.35
357 358 2.023741 CTCGCCATGCATTGACGC 59.976 61.111 1.13 0.00 0.00 5.19
358 359 2.436469 TCGCCATGCATTGACGCT 60.436 55.556 1.13 0.00 0.00 5.07
359 360 1.153469 TCGCCATGCATTGACGCTA 60.153 52.632 1.13 0.00 0.00 4.26
360 361 0.532640 TCGCCATGCATTGACGCTAT 60.533 50.000 1.13 0.00 0.00 2.97
361 362 0.308684 CGCCATGCATTGACGCTATT 59.691 50.000 1.13 0.00 0.00 1.73
362 363 1.268692 CGCCATGCATTGACGCTATTT 60.269 47.619 1.13 0.00 0.00 1.40
363 364 2.121786 GCCATGCATTGACGCTATTTG 58.878 47.619 1.13 0.00 0.00 2.32
364 365 2.734670 CCATGCATTGACGCTATTTGG 58.265 47.619 0.00 0.00 0.00 3.28
365 366 2.358582 CCATGCATTGACGCTATTTGGA 59.641 45.455 0.00 0.00 0.00 3.53
366 367 3.005050 CCATGCATTGACGCTATTTGGAT 59.995 43.478 0.00 0.00 0.00 3.41
367 368 3.696281 TGCATTGACGCTATTTGGATG 57.304 42.857 0.00 0.00 0.00 3.51
368 369 3.277715 TGCATTGACGCTATTTGGATGA 58.722 40.909 0.00 0.00 0.00 2.92
369 370 3.065233 TGCATTGACGCTATTTGGATGAC 59.935 43.478 0.00 0.00 0.00 3.06
370 371 3.313526 GCATTGACGCTATTTGGATGACT 59.686 43.478 0.00 0.00 0.00 3.41
371 372 4.787563 GCATTGACGCTATTTGGATGACTG 60.788 45.833 0.00 0.00 0.00 3.51
372 373 3.885724 TGACGCTATTTGGATGACTGA 57.114 42.857 0.00 0.00 0.00 3.41
373 374 3.521560 TGACGCTATTTGGATGACTGAC 58.478 45.455 0.00 0.00 0.00 3.51
374 375 2.866762 GACGCTATTTGGATGACTGACC 59.133 50.000 0.00 0.00 0.00 4.02
375 376 2.236146 ACGCTATTTGGATGACTGACCA 59.764 45.455 0.00 0.00 0.00 4.02
376 377 3.118261 ACGCTATTTGGATGACTGACCAT 60.118 43.478 0.00 0.00 36.02 3.55
377 378 3.249320 CGCTATTTGGATGACTGACCATG 59.751 47.826 0.00 0.00 36.02 3.66
378 379 4.202441 GCTATTTGGATGACTGACCATGT 58.798 43.478 0.00 0.00 36.02 3.21
379 380 5.368145 GCTATTTGGATGACTGACCATGTA 58.632 41.667 0.00 0.00 36.02 2.29
380 381 5.468072 GCTATTTGGATGACTGACCATGTAG 59.532 44.000 0.00 0.00 36.02 2.74
381 382 5.698741 ATTTGGATGACTGACCATGTAGA 57.301 39.130 0.00 0.00 36.02 2.59
382 383 5.497464 TTTGGATGACTGACCATGTAGAA 57.503 39.130 0.00 0.00 36.02 2.10
383 384 5.698741 TTGGATGACTGACCATGTAGAAT 57.301 39.130 0.00 0.00 36.02 2.40
384 385 5.027293 TGGATGACTGACCATGTAGAATG 57.973 43.478 0.00 0.00 0.00 2.67
385 386 4.471025 TGGATGACTGACCATGTAGAATGT 59.529 41.667 0.00 0.00 0.00 2.71
386 387 5.045651 TGGATGACTGACCATGTAGAATGTT 60.046 40.000 0.00 0.00 0.00 2.71
387 388 5.525378 GGATGACTGACCATGTAGAATGTTC 59.475 44.000 0.00 0.00 0.00 3.18
388 389 5.482163 TGACTGACCATGTAGAATGTTCA 57.518 39.130 0.00 0.00 0.00 3.18
389 390 5.863965 TGACTGACCATGTAGAATGTTCAA 58.136 37.500 0.00 0.00 0.00 2.69
390 391 5.934043 TGACTGACCATGTAGAATGTTCAAG 59.066 40.000 0.00 0.00 0.00 3.02
391 392 4.697352 ACTGACCATGTAGAATGTTCAAGC 59.303 41.667 0.00 0.00 0.00 4.01
392 393 4.910195 TGACCATGTAGAATGTTCAAGCT 58.090 39.130 0.00 0.00 0.00 3.74
393 394 5.316167 TGACCATGTAGAATGTTCAAGCTT 58.684 37.500 0.00 0.00 0.00 3.74
394 395 5.181811 TGACCATGTAGAATGTTCAAGCTTG 59.818 40.000 20.81 20.81 0.00 4.01
395 396 4.082571 ACCATGTAGAATGTTCAAGCTTGC 60.083 41.667 21.99 9.31 0.00 4.01
396 397 4.082625 CCATGTAGAATGTTCAAGCTTGCA 60.083 41.667 21.99 14.90 0.00 4.08
397 398 5.393787 CCATGTAGAATGTTCAAGCTTGCAT 60.394 40.000 21.99 16.50 0.00 3.96
398 399 5.710513 TGTAGAATGTTCAAGCTTGCATT 57.289 34.783 23.90 23.90 34.67 3.56
399 400 5.463286 TGTAGAATGTTCAAGCTTGCATTG 58.537 37.500 26.89 6.53 32.47 2.82
400 401 4.859304 AGAATGTTCAAGCTTGCATTGA 57.141 36.364 26.89 8.70 34.93 2.57
401 402 5.204409 AGAATGTTCAAGCTTGCATTGAA 57.796 34.783 26.89 13.68 42.73 2.69
402 403 5.603596 AGAATGTTCAAGCTTGCATTGAAA 58.396 33.333 26.89 12.81 45.48 2.69
403 404 6.050432 AGAATGTTCAAGCTTGCATTGAAAA 58.950 32.000 26.89 12.30 45.48 2.29
404 405 6.539464 AGAATGTTCAAGCTTGCATTGAAAAA 59.461 30.769 26.89 11.47 45.48 1.94
425 426 7.745620 AAAAAGAGGTGTTTGATTATCTCGT 57.254 32.000 0.00 0.00 0.00 4.18
426 427 6.969828 AAAGAGGTGTTTGATTATCTCGTC 57.030 37.500 0.00 0.00 0.00 4.20
427 428 5.661056 AGAGGTGTTTGATTATCTCGTCA 57.339 39.130 0.00 0.00 0.00 4.35
428 429 6.227298 AGAGGTGTTTGATTATCTCGTCAT 57.773 37.500 0.00 0.00 0.00 3.06
429 430 6.045318 AGAGGTGTTTGATTATCTCGTCATG 58.955 40.000 0.00 0.00 0.00 3.07
430 431 5.977635 AGGTGTTTGATTATCTCGTCATGA 58.022 37.500 0.00 0.00 0.00 3.07
431 432 6.045318 AGGTGTTTGATTATCTCGTCATGAG 58.955 40.000 0.00 0.00 46.72 2.90
432 433 5.812642 GGTGTTTGATTATCTCGTCATGAGT 59.187 40.000 0.00 0.00 45.46 3.41
433 434 6.978659 GGTGTTTGATTATCTCGTCATGAGTA 59.021 38.462 0.00 0.00 45.46 2.59
434 435 7.653713 GGTGTTTGATTATCTCGTCATGAGTAT 59.346 37.037 0.00 0.00 45.46 2.12
435 436 9.678941 GTGTTTGATTATCTCGTCATGAGTATA 57.321 33.333 0.00 0.00 45.46 1.47
463 464 7.478520 ACTATACTTCCGAAAATCCAATTCG 57.521 36.000 1.93 1.93 46.86 3.34
469 470 3.325230 CGAAAATCCAATTCGGCTCTC 57.675 47.619 0.99 0.00 44.36 3.20
470 471 2.285834 CGAAAATCCAATTCGGCTCTCG 60.286 50.000 0.99 0.00 44.36 4.04
471 472 1.668419 AAATCCAATTCGGCTCTCGG 58.332 50.000 0.00 0.00 39.77 4.63
472 473 0.830648 AATCCAATTCGGCTCTCGGA 59.169 50.000 0.00 0.00 39.77 4.55
473 474 1.051812 ATCCAATTCGGCTCTCGGAT 58.948 50.000 0.00 0.00 39.09 4.18
474 475 0.104855 TCCAATTCGGCTCTCGGATG 59.895 55.000 0.00 0.00 37.13 3.51
475 476 1.502163 CCAATTCGGCTCTCGGATGC 61.502 60.000 0.00 0.00 37.13 3.91
476 477 0.811219 CAATTCGGCTCTCGGATGCA 60.811 55.000 0.00 0.00 37.13 3.96
477 478 0.811616 AATTCGGCTCTCGGATGCAC 60.812 55.000 0.00 0.00 37.13 4.57
478 479 2.960957 ATTCGGCTCTCGGATGCACG 62.961 60.000 0.00 0.00 35.40 5.34
479 480 4.498520 CGGCTCTCGGATGCACGT 62.499 66.667 0.00 0.00 34.75 4.49
480 481 2.887568 GGCTCTCGGATGCACGTG 60.888 66.667 12.28 12.28 34.94 4.49
481 482 3.558411 GCTCTCGGATGCACGTGC 61.558 66.667 33.11 33.11 42.50 5.34
482 483 2.182791 CTCTCGGATGCACGTGCT 59.817 61.111 37.59 24.51 42.66 4.40
483 484 1.875813 CTCTCGGATGCACGTGCTC 60.876 63.158 37.59 29.58 42.66 4.26
484 485 2.887568 CTCGGATGCACGTGCTCC 60.888 66.667 37.59 34.33 42.66 4.70
485 486 3.362399 CTCGGATGCACGTGCTCCT 62.362 63.158 35.02 25.10 42.66 3.69
486 487 3.190849 CGGATGCACGTGCTCCTG 61.191 66.667 35.02 28.73 42.66 3.86
487 488 2.265739 GGATGCACGTGCTCCTGA 59.734 61.111 37.59 20.41 42.66 3.86
488 489 1.812922 GGATGCACGTGCTCCTGAG 60.813 63.158 37.59 0.95 42.66 3.35
504 505 6.246420 CTCCTGAGCCGGAAATAATTATTG 57.754 41.667 5.05 0.71 31.44 1.90
505 506 5.935945 TCCTGAGCCGGAAATAATTATTGA 58.064 37.500 5.05 0.00 0.00 2.57
506 507 6.361433 TCCTGAGCCGGAAATAATTATTGAA 58.639 36.000 5.05 0.00 0.00 2.69
507 508 6.831353 TCCTGAGCCGGAAATAATTATTGAAA 59.169 34.615 5.05 0.00 0.00 2.69
508 509 7.505585 TCCTGAGCCGGAAATAATTATTGAAAT 59.494 33.333 5.05 0.00 0.00 2.17
509 510 7.596248 CCTGAGCCGGAAATAATTATTGAAATG 59.404 37.037 5.05 2.00 0.00 2.32
510 511 8.006298 TGAGCCGGAAATAATTATTGAAATGT 57.994 30.769 5.05 0.00 0.00 2.71
511 512 9.126151 TGAGCCGGAAATAATTATTGAAATGTA 57.874 29.630 5.05 0.00 0.00 2.29
512 513 9.959749 GAGCCGGAAATAATTATTGAAATGTAA 57.040 29.630 5.05 0.00 0.00 2.41
538 539 7.537596 AAAAATGGTTTCATAGTCACATCCA 57.462 32.000 0.00 0.00 32.44 3.41
539 540 7.537596 AAAATGGTTTCATAGTCACATCCAA 57.462 32.000 0.00 0.00 32.44 3.53
540 541 7.537596 AAATGGTTTCATAGTCACATCCAAA 57.462 32.000 0.00 0.00 32.44 3.28
541 542 5.957842 TGGTTTCATAGTCACATCCAAAC 57.042 39.130 0.00 0.00 0.00 2.93
542 543 4.454161 TGGTTTCATAGTCACATCCAAACG 59.546 41.667 0.00 0.00 0.00 3.60
543 544 4.454504 GGTTTCATAGTCACATCCAAACGT 59.545 41.667 0.00 0.00 0.00 3.99
544 545 5.048991 GGTTTCATAGTCACATCCAAACGTT 60.049 40.000 0.00 0.00 0.00 3.99
545 546 6.148150 GGTTTCATAGTCACATCCAAACGTTA 59.852 38.462 0.00 0.00 0.00 3.18
546 547 6.715344 TTCATAGTCACATCCAAACGTTAC 57.285 37.500 0.00 0.00 0.00 2.50
547 548 6.032956 TCATAGTCACATCCAAACGTTACT 57.967 37.500 0.00 0.84 0.00 2.24
548 549 6.460781 TCATAGTCACATCCAAACGTTACTT 58.539 36.000 0.00 0.00 0.00 2.24
549 550 6.367695 TCATAGTCACATCCAAACGTTACTTG 59.632 38.462 0.00 0.00 0.00 3.16
550 551 4.448210 AGTCACATCCAAACGTTACTTGT 58.552 39.130 0.00 0.58 0.00 3.16
551 552 5.603596 AGTCACATCCAAACGTTACTTGTA 58.396 37.500 0.00 0.00 0.00 2.41
552 553 6.050432 AGTCACATCCAAACGTTACTTGTAA 58.950 36.000 0.00 0.00 0.00 2.41
553 554 6.539464 AGTCACATCCAAACGTTACTTGTAAA 59.461 34.615 0.00 0.00 0.00 2.01
554 555 7.066043 AGTCACATCCAAACGTTACTTGTAAAA 59.934 33.333 0.00 0.00 0.00 1.52
555 556 7.697291 GTCACATCCAAACGTTACTTGTAAAAA 59.303 33.333 0.00 0.00 0.00 1.94
585 586 8.992835 AGATGAAAAGGTTAAGCATTTTGATC 57.007 30.769 20.41 20.41 45.17 2.92
586 587 8.992835 GATGAAAAGGTTAAGCATTTTGATCT 57.007 30.769 20.55 5.74 43.19 2.75
587 588 8.767478 ATGAAAAGGTTAAGCATTTTGATCTG 57.233 30.769 9.02 0.00 40.59 2.90
588 589 6.646240 TGAAAAGGTTAAGCATTTTGATCTGC 59.354 34.615 9.02 0.00 40.59 4.26
589 590 5.726980 AAGGTTAAGCATTTTGATCTGCA 57.273 34.783 7.52 0.00 40.88 4.41
590 591 5.064441 AGGTTAAGCATTTTGATCTGCAC 57.936 39.130 7.52 0.00 40.88 4.57
591 592 4.523943 AGGTTAAGCATTTTGATCTGCACA 59.476 37.500 7.52 0.00 40.88 4.57
592 593 5.010922 AGGTTAAGCATTTTGATCTGCACAA 59.989 36.000 7.52 0.00 40.88 3.33
593 594 5.695816 GGTTAAGCATTTTGATCTGCACAAA 59.304 36.000 7.34 0.00 40.88 2.83
594 595 6.202570 GGTTAAGCATTTTGATCTGCACAAAA 59.797 34.615 13.97 13.97 46.29 2.44
595 596 7.254727 GGTTAAGCATTTTGATCTGCACAAAAA 60.255 33.333 15.16 5.88 45.70 1.94
641 642 9.934190 ACATTTAAATTTGTTTTTCACTGATGC 57.066 25.926 0.00 0.00 0.00 3.91
642 643 9.932699 CATTTAAATTTGTTTTTCACTGATGCA 57.067 25.926 0.00 0.00 0.00 3.96
643 644 9.934190 ATTTAAATTTGTTTTTCACTGATGCAC 57.066 25.926 0.00 0.00 0.00 4.57
644 645 8.715191 TTAAATTTGTTTTTCACTGATGCACT 57.285 26.923 0.00 0.00 0.00 4.40
645 646 6.592798 AATTTGTTTTTCACTGATGCACTG 57.407 33.333 0.00 0.00 0.00 3.66
646 647 3.082698 TGTTTTTCACTGATGCACTGC 57.917 42.857 0.00 0.00 0.00 4.40
647 648 2.689471 TGTTTTTCACTGATGCACTGCT 59.311 40.909 1.98 0.00 0.00 4.24
648 649 3.882288 TGTTTTTCACTGATGCACTGCTA 59.118 39.130 1.98 0.00 0.00 3.49
649 650 4.222114 GTTTTTCACTGATGCACTGCTAC 58.778 43.478 1.98 0.00 0.00 3.58
650 651 3.407424 TTTCACTGATGCACTGCTACT 57.593 42.857 1.98 0.00 0.00 2.57
651 652 2.662006 TCACTGATGCACTGCTACTC 57.338 50.000 1.98 0.00 0.00 2.59
652 653 1.135286 TCACTGATGCACTGCTACTCG 60.135 52.381 1.98 0.00 0.00 4.18
653 654 0.459237 ACTGATGCACTGCTACTCGC 60.459 55.000 1.98 0.00 39.77 5.03
666 667 5.328886 TGCTACTCGCATGAAAATTATCG 57.671 39.130 0.00 0.00 45.47 2.92
667 668 4.211164 TGCTACTCGCATGAAAATTATCGG 59.789 41.667 0.00 0.00 45.47 4.18
668 669 4.211374 GCTACTCGCATGAAAATTATCGGT 59.789 41.667 0.00 0.00 38.92 4.69
669 670 5.277345 GCTACTCGCATGAAAATTATCGGTT 60.277 40.000 0.00 0.00 38.92 4.44
670 671 6.073980 GCTACTCGCATGAAAATTATCGGTTA 60.074 38.462 0.00 0.00 38.92 2.85
671 672 6.861065 ACTCGCATGAAAATTATCGGTTAT 57.139 33.333 0.00 0.00 0.00 1.89
672 673 6.658831 ACTCGCATGAAAATTATCGGTTATG 58.341 36.000 0.00 0.00 0.00 1.90
673 674 5.448438 TCGCATGAAAATTATCGGTTATGC 58.552 37.500 0.00 0.00 37.05 3.14
674 675 5.238432 TCGCATGAAAATTATCGGTTATGCT 59.762 36.000 0.00 0.00 37.96 3.79
675 676 5.914635 CGCATGAAAATTATCGGTTATGCTT 59.085 36.000 0.00 0.00 37.96 3.91
676 677 6.129378 CGCATGAAAATTATCGGTTATGCTTG 60.129 38.462 0.00 0.00 37.96 4.01
677 678 6.346040 GCATGAAAATTATCGGTTATGCTTGC 60.346 38.462 0.00 0.00 37.34 4.01
678 679 5.270083 TGAAAATTATCGGTTATGCTTGCG 58.730 37.500 0.00 0.00 0.00 4.85
679 680 3.896648 AATTATCGGTTATGCTTGCGG 57.103 42.857 0.00 0.00 0.00 5.69
680 681 1.588674 TTATCGGTTATGCTTGCGGG 58.411 50.000 0.00 0.00 0.00 6.13
681 682 0.466543 TATCGGTTATGCTTGCGGGT 59.533 50.000 0.00 0.00 0.00 5.28
682 683 1.095228 ATCGGTTATGCTTGCGGGTG 61.095 55.000 0.00 0.00 0.00 4.61
683 684 2.489751 GGTTATGCTTGCGGGTGC 59.510 61.111 0.00 0.00 43.20 5.01
693 694 4.617875 GCGGGTGCACTTCACTAT 57.382 55.556 17.98 0.00 44.98 2.12
694 695 2.089854 GCGGGTGCACTTCACTATG 58.910 57.895 17.98 0.00 44.98 2.23
695 696 0.391130 GCGGGTGCACTTCACTATGA 60.391 55.000 17.98 0.00 44.98 2.15
696 697 1.743772 GCGGGTGCACTTCACTATGAT 60.744 52.381 17.98 0.00 44.98 2.45
697 698 2.205074 CGGGTGCACTTCACTATGATC 58.795 52.381 17.98 0.00 44.98 2.92
698 699 2.159043 CGGGTGCACTTCACTATGATCT 60.159 50.000 17.98 0.00 44.98 2.75
699 700 3.462021 GGGTGCACTTCACTATGATCTC 58.538 50.000 17.98 0.00 44.98 2.75
700 701 3.118629 GGGTGCACTTCACTATGATCTCA 60.119 47.826 17.98 0.00 44.98 3.27
701 702 3.868077 GGTGCACTTCACTATGATCTCAC 59.132 47.826 17.98 0.00 44.98 3.51
702 703 3.868077 GTGCACTTCACTATGATCTCACC 59.132 47.826 10.32 0.00 42.38 4.02
703 704 3.119291 GCACTTCACTATGATCTCACCG 58.881 50.000 0.00 0.00 0.00 4.94
704 705 3.181486 GCACTTCACTATGATCTCACCGA 60.181 47.826 0.00 0.00 0.00 4.69
705 706 4.605968 CACTTCACTATGATCTCACCGAG 58.394 47.826 0.00 0.00 0.00 4.63
706 707 4.336713 CACTTCACTATGATCTCACCGAGA 59.663 45.833 0.00 0.00 43.20 4.04
717 718 3.995199 TCTCACCGAGATTAATGGATGC 58.005 45.455 0.00 0.00 33.35 3.91
718 719 2.733552 CTCACCGAGATTAATGGATGCG 59.266 50.000 0.00 0.00 0.00 4.73
719 720 1.800586 CACCGAGATTAATGGATGCGG 59.199 52.381 0.00 0.00 42.64 5.69
720 721 1.270839 ACCGAGATTAATGGATGCGGG 60.271 52.381 0.00 1.56 41.38 6.13
721 722 1.270839 CCGAGATTAATGGATGCGGGT 60.271 52.381 0.00 0.00 34.08 5.28
722 723 1.800586 CGAGATTAATGGATGCGGGTG 59.199 52.381 0.00 0.00 0.00 4.61
723 724 1.537202 GAGATTAATGGATGCGGGTGC 59.463 52.381 0.00 0.00 43.20 5.01
733 734 4.540153 GCGGGTGCACACTCATAT 57.460 55.556 18.70 0.00 42.15 1.78
751 752 2.435372 ATTATTCCACACATGCGGGT 57.565 45.000 0.00 0.00 0.00 5.28
786 787 3.740631 TCTCACCGAGATTCATGGATG 57.259 47.619 0.00 0.00 33.35 3.51
791 792 3.922850 CACCGAGATTCATGGATGTATCG 59.077 47.826 0.00 0.00 38.92 2.92
793 794 4.280929 ACCGAGATTCATGGATGTATCGAA 59.719 41.667 12.31 0.00 38.92 3.71
796 797 5.565637 CGAGATTCATGGATGTATCGAAGGT 60.566 44.000 6.92 0.00 38.92 3.50
808 809 2.554370 TCGAAGGTTTCCATCCGTTT 57.446 45.000 0.00 0.00 0.00 3.60
811 821 3.936453 TCGAAGGTTTCCATCCGTTTATG 59.064 43.478 0.00 0.00 0.00 1.90
830 840 7.007905 CGTTTATGTCGGTTCCATTAAACAATG 59.992 37.037 0.00 0.00 0.00 2.82
844 854 2.531522 ACAATGGCAGTTCCTTTTGC 57.468 45.000 0.00 0.00 39.56 3.68
845 855 2.041701 ACAATGGCAGTTCCTTTTGCT 58.958 42.857 0.00 0.00 40.15 3.91
846 856 2.435437 ACAATGGCAGTTCCTTTTGCTT 59.565 40.909 0.00 0.00 40.15 3.91
853 863 5.940470 TGGCAGTTCCTTTTGCTTTTAAAAA 59.060 32.000 1.66 0.00 40.15 1.94
862 872 9.452065 TCCTTTTGCTTTTAAAAACAAACAAAC 57.548 25.926 22.70 0.00 34.73 2.93
868 878 7.318205 TGCTTTTAAAAACAAACAAACGAAACG 59.682 29.630 1.56 0.00 0.00 3.60
869 879 7.526518 GCTTTTAAAAACAAACAAACGAAACGA 59.473 29.630 1.66 0.00 0.00 3.85
870 880 8.677176 TTTTAAAAACAAACAAACGAAACGAC 57.323 26.923 0.00 0.00 0.00 4.34
878 888 2.286772 ACAAACGAAACGACTGCAATCC 60.287 45.455 0.00 0.00 0.00 3.01
885 895 5.583061 ACGAAACGACTGCAATCCATTAATA 59.417 36.000 0.00 0.00 0.00 0.98
899 909 9.950680 CAATCCATTAATAGACCACATTAACAC 57.049 33.333 0.00 0.00 32.27 3.32
905 915 2.942710 AGACCACATTAACACGACTCG 58.057 47.619 0.00 0.00 0.00 4.18
911 921 4.376008 CCACATTAACACGACTCGACAAAG 60.376 45.833 5.20 0.00 0.00 2.77
920 930 0.575390 ACTCGACAAAGCGTTCGTTG 59.425 50.000 0.00 0.00 37.63 4.10
921 931 0.718220 CTCGACAAAGCGTTCGTTGC 60.718 55.000 0.00 0.00 35.51 4.17
936 968 4.759516 TCGTTGCTCCTTTAAAATGGTC 57.240 40.909 0.00 0.00 0.00 4.02
964 996 4.163839 AGAACCTCATTCTCAATCCTCCTG 59.836 45.833 0.00 0.00 44.99 3.86
965 997 3.458831 ACCTCATTCTCAATCCTCCTGT 58.541 45.455 0.00 0.00 0.00 4.00
966 998 3.454082 ACCTCATTCTCAATCCTCCTGTC 59.546 47.826 0.00 0.00 0.00 3.51
967 999 3.710677 CCTCATTCTCAATCCTCCTGTCT 59.289 47.826 0.00 0.00 0.00 3.41
968 1000 4.898265 CCTCATTCTCAATCCTCCTGTCTA 59.102 45.833 0.00 0.00 0.00 2.59
969 1001 5.010922 CCTCATTCTCAATCCTCCTGTCTAG 59.989 48.000 0.00 0.00 0.00 2.43
970 1002 5.770919 TCATTCTCAATCCTCCTGTCTAGA 58.229 41.667 0.00 0.00 0.00 2.43
971 1003 6.197903 TCATTCTCAATCCTCCTGTCTAGAA 58.802 40.000 0.00 0.00 0.00 2.10
972 1004 6.323482 TCATTCTCAATCCTCCTGTCTAGAAG 59.677 42.308 0.00 0.00 0.00 2.85
974 1006 5.197451 TCTCAATCCTCCTGTCTAGAAGTC 58.803 45.833 0.00 0.00 0.00 3.01
975 1007 4.935578 TCAATCCTCCTGTCTAGAAGTCA 58.064 43.478 0.00 0.00 0.00 3.41
976 1008 4.707448 TCAATCCTCCTGTCTAGAAGTCAC 59.293 45.833 0.00 0.00 0.00 3.67
977 1009 2.712709 TCCTCCTGTCTAGAAGTCACG 58.287 52.381 0.00 0.00 0.00 4.35
979 1011 3.054287 TCCTCCTGTCTAGAAGTCACGAT 60.054 47.826 0.00 0.00 0.00 3.73
982 1014 4.332828 TCCTGTCTAGAAGTCACGATCAA 58.667 43.478 0.00 0.00 0.00 2.57
983 1015 4.950475 TCCTGTCTAGAAGTCACGATCAAT 59.050 41.667 0.00 0.00 0.00 2.57
984 1016 6.120220 TCCTGTCTAGAAGTCACGATCAATA 58.880 40.000 0.00 0.00 0.00 1.90
985 1017 6.261158 TCCTGTCTAGAAGTCACGATCAATAG 59.739 42.308 0.00 0.00 0.00 1.73
987 1019 7.040755 CCTGTCTAGAAGTCACGATCAATAGAT 60.041 40.741 0.00 0.00 37.13 1.98
988 1020 8.904099 TGTCTAGAAGTCACGATCAATAGATA 57.096 34.615 0.00 0.00 33.72 1.98
989 1021 8.775527 TGTCTAGAAGTCACGATCAATAGATAC 58.224 37.037 0.00 0.00 33.72 2.24
990 1022 7.953173 GTCTAGAAGTCACGATCAATAGATACG 59.047 40.741 0.00 0.00 33.72 3.06
991 1023 5.453648 AGAAGTCACGATCAATAGATACGC 58.546 41.667 0.00 0.00 33.72 4.42
992 1024 4.830826 AGTCACGATCAATAGATACGCA 57.169 40.909 0.00 0.00 33.72 5.24
1025 1057 4.702131 GGCACTCAAGGAATTACTCATGTT 59.298 41.667 0.00 0.00 0.00 2.71
1056 1088 0.039764 TCTTCCTTCTCCTCCGAGCA 59.960 55.000 0.00 0.00 35.94 4.26
1062 1094 4.504916 CTCCTCCGAGCAGCCACG 62.505 72.222 3.03 3.03 0.00 4.94
1155 1187 3.190849 CTCGCCATGTGCTCCGTG 61.191 66.667 4.92 0.00 38.05 4.94
1163 1195 4.681978 GTGCTCCGTGGGCTTCGT 62.682 66.667 0.00 0.00 0.00 3.85
1662 1694 2.810400 CGTCTCCAACAACTGGTTCCAT 60.810 50.000 0.00 0.00 46.51 3.41
1845 1884 1.172812 GGAGGGAATACGCCATTGGC 61.173 60.000 18.10 18.10 46.75 4.52
1993 2037 3.388308 CTCGCCTTCTGATCTTGGTATG 58.612 50.000 0.00 0.00 0.00 2.39
2110 2157 2.956799 TTCAAGCAGACGGGCAGCAA 62.957 55.000 0.00 0.00 35.83 3.91
2131 2178 0.238817 GTGCGCCCGAATTACAACAA 59.761 50.000 4.18 0.00 0.00 2.83
2211 2258 3.385384 CTCTGAGGTGCTCCGCCA 61.385 66.667 6.08 4.66 36.32 5.69
2248 2296 2.623889 CGGAGAGGATAAAGACGTCCAT 59.376 50.000 13.01 3.72 36.96 3.41
2261 2342 2.735134 GACGTCCATTGGAGTGTGTTAC 59.265 50.000 13.72 0.00 29.39 2.50
2289 2370 9.888878 CTTTGAATATAATGTACTTGCTGATGG 57.111 33.333 0.00 0.00 0.00 3.51
2314 2397 4.978580 GCTTATAGCTGTAAAAATGGCTGC 59.021 41.667 4.38 0.00 38.45 5.25
2359 2442 8.836413 TCTTTTTACTCCGCATATTAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
2518 2708 2.203337 TTGCGTCCCTTGCAAGCT 60.203 55.556 21.43 0.00 46.62 3.74
2544 2734 1.001633 ACCAACCGCTAACACGATCTT 59.998 47.619 0.00 0.00 34.06 2.40
2562 2752 3.206150 TCTTGCCTTCGCATAATTCCTC 58.794 45.455 0.00 0.00 46.67 3.71
2571 2761 2.540101 CGCATAATTCCTCGAGTTCACC 59.460 50.000 12.31 0.00 0.00 4.02
2581 2774 2.484264 CTCGAGTTCACCATGGAAAACC 59.516 50.000 21.47 13.55 0.00 3.27
2682 2877 3.299340 TTCTCGGTGCACTAGAAGAAC 57.701 47.619 22.90 3.80 0.00 3.01
2691 2886 2.610727 GCACTAGAAGAACGCTGAAGGT 60.611 50.000 0.00 0.00 0.00 3.50
2874 3074 6.223852 ACAACACCACTCTATCAAAGTACAG 58.776 40.000 0.00 0.00 0.00 2.74
3125 3424 3.423749 TCATGATGCTGACAACACCAAT 58.576 40.909 0.00 0.00 30.62 3.16
3170 3469 8.365647 AGTCGATTAGTAACTTCCAGAAAGAAA 58.634 33.333 0.00 0.00 38.44 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.706691 TCGATATGTCAGTTTTCTTACTCTTTT 57.293 29.630 0.00 0.00 0.00 2.27
16 17 9.141400 GTCGATATGTCAGTTTTCTTACTCTTT 57.859 33.333 0.00 0.00 0.00 2.52
17 18 7.760340 GGTCGATATGTCAGTTTTCTTACTCTT 59.240 37.037 0.00 0.00 0.00 2.85
18 19 7.093902 TGGTCGATATGTCAGTTTTCTTACTCT 60.094 37.037 0.00 0.00 0.00 3.24
19 20 7.009357 GTGGTCGATATGTCAGTTTTCTTACTC 59.991 40.741 0.00 0.00 0.00 2.59
20 21 6.812160 GTGGTCGATATGTCAGTTTTCTTACT 59.188 38.462 0.00 0.00 0.00 2.24
21 22 6.588756 TGTGGTCGATATGTCAGTTTTCTTAC 59.411 38.462 0.00 0.00 0.00 2.34
22 23 6.693466 TGTGGTCGATATGTCAGTTTTCTTA 58.307 36.000 0.00 0.00 0.00 2.10
23 24 5.547465 TGTGGTCGATATGTCAGTTTTCTT 58.453 37.500 0.00 0.00 0.00 2.52
24 25 5.147330 TGTGGTCGATATGTCAGTTTTCT 57.853 39.130 0.00 0.00 0.00 2.52
25 26 4.929808 ACTGTGGTCGATATGTCAGTTTTC 59.070 41.667 0.00 0.00 33.26 2.29
26 27 4.894784 ACTGTGGTCGATATGTCAGTTTT 58.105 39.130 0.00 0.00 33.26 2.43
27 28 4.537135 ACTGTGGTCGATATGTCAGTTT 57.463 40.909 0.00 0.00 33.26 2.66
28 29 5.654603 TTACTGTGGTCGATATGTCAGTT 57.345 39.130 13.54 3.54 37.35 3.16
29 30 5.185249 ACTTTACTGTGGTCGATATGTCAGT 59.815 40.000 13.10 13.10 39.11 3.41
30 31 5.651530 ACTTTACTGTGGTCGATATGTCAG 58.348 41.667 0.00 0.00 0.00 3.51
31 32 5.393787 GGACTTTACTGTGGTCGATATGTCA 60.394 44.000 0.00 0.00 0.00 3.58
32 33 5.041940 GGACTTTACTGTGGTCGATATGTC 58.958 45.833 0.00 0.00 0.00 3.06
33 34 4.710375 AGGACTTTACTGTGGTCGATATGT 59.290 41.667 0.00 0.00 0.00 2.29
34 35 5.263968 AGGACTTTACTGTGGTCGATATG 57.736 43.478 0.00 0.00 0.00 1.78
35 36 8.701908 TTATAGGACTTTACTGTGGTCGATAT 57.298 34.615 0.00 2.54 0.00 1.63
36 37 7.994911 TCTTATAGGACTTTACTGTGGTCGATA 59.005 37.037 0.00 0.00 0.00 2.92
37 38 6.832384 TCTTATAGGACTTTACTGTGGTCGAT 59.168 38.462 0.00 0.00 0.00 3.59
38 39 6.094603 GTCTTATAGGACTTTACTGTGGTCGA 59.905 42.308 7.71 0.00 33.81 4.20
39 40 6.264088 GTCTTATAGGACTTTACTGTGGTCG 58.736 44.000 7.71 0.00 33.81 4.79
40 41 6.571605 GGTCTTATAGGACTTTACTGTGGTC 58.428 44.000 14.01 0.00 36.55 4.02
41 42 5.126707 CGGTCTTATAGGACTTTACTGTGGT 59.873 44.000 14.01 0.00 36.55 4.16
42 43 5.359009 TCGGTCTTATAGGACTTTACTGTGG 59.641 44.000 14.01 0.00 36.55 4.17
43 44 6.127814 TGTCGGTCTTATAGGACTTTACTGTG 60.128 42.308 14.01 0.00 36.55 3.66
44 45 5.948162 TGTCGGTCTTATAGGACTTTACTGT 59.052 40.000 14.01 0.00 36.55 3.55
45 46 6.264088 GTGTCGGTCTTATAGGACTTTACTG 58.736 44.000 14.01 0.00 36.55 2.74
46 47 5.065731 CGTGTCGGTCTTATAGGACTTTACT 59.934 44.000 14.01 0.00 36.55 2.24
47 48 5.065218 TCGTGTCGGTCTTATAGGACTTTAC 59.935 44.000 14.01 10.23 36.55 2.01
48 49 5.185454 TCGTGTCGGTCTTATAGGACTTTA 58.815 41.667 14.01 0.00 36.55 1.85
49 50 4.012374 TCGTGTCGGTCTTATAGGACTTT 58.988 43.478 14.01 0.00 36.55 2.66
50 51 3.614092 TCGTGTCGGTCTTATAGGACTT 58.386 45.455 14.01 0.00 36.55 3.01
51 52 3.272574 TCGTGTCGGTCTTATAGGACT 57.727 47.619 14.01 0.00 36.55 3.85
52 53 4.083590 GGTATCGTGTCGGTCTTATAGGAC 60.084 50.000 6.45 6.45 35.66 3.85
53 54 4.067896 GGTATCGTGTCGGTCTTATAGGA 58.932 47.826 0.00 0.00 0.00 2.94
54 55 4.070716 AGGTATCGTGTCGGTCTTATAGG 58.929 47.826 0.00 0.00 0.00 2.57
55 56 6.592994 TCATAGGTATCGTGTCGGTCTTATAG 59.407 42.308 0.00 0.00 0.00 1.31
56 57 6.369890 GTCATAGGTATCGTGTCGGTCTTATA 59.630 42.308 0.00 0.00 0.00 0.98
57 58 5.180868 GTCATAGGTATCGTGTCGGTCTTAT 59.819 44.000 0.00 0.00 0.00 1.73
58 59 4.512944 GTCATAGGTATCGTGTCGGTCTTA 59.487 45.833 0.00 0.00 0.00 2.10
59 60 3.314635 GTCATAGGTATCGTGTCGGTCTT 59.685 47.826 0.00 0.00 0.00 3.01
60 61 2.877168 GTCATAGGTATCGTGTCGGTCT 59.123 50.000 0.00 0.00 0.00 3.85
61 62 2.615447 TGTCATAGGTATCGTGTCGGTC 59.385 50.000 0.00 0.00 0.00 4.79
62 63 2.646930 TGTCATAGGTATCGTGTCGGT 58.353 47.619 0.00 0.00 0.00 4.69
63 64 3.703286 TTGTCATAGGTATCGTGTCGG 57.297 47.619 0.00 0.00 0.00 4.79
64 65 4.042398 CCTTTGTCATAGGTATCGTGTCG 58.958 47.826 1.32 0.00 0.00 4.35
65 66 5.258456 TCCTTTGTCATAGGTATCGTGTC 57.742 43.478 8.94 0.00 34.29 3.67
66 67 5.871396 ATCCTTTGTCATAGGTATCGTGT 57.129 39.130 8.94 0.00 34.29 4.49
67 68 6.280643 TCAATCCTTTGTCATAGGTATCGTG 58.719 40.000 8.94 2.96 34.32 4.35
68 69 6.479972 TCAATCCTTTGTCATAGGTATCGT 57.520 37.500 8.94 0.00 34.32 3.73
69 70 7.210174 TCTTCAATCCTTTGTCATAGGTATCG 58.790 38.462 8.94 0.00 34.32 2.92
70 71 9.566432 AATCTTCAATCCTTTGTCATAGGTATC 57.434 33.333 8.94 0.00 34.32 2.24
73 74 9.347240 CATAATCTTCAATCCTTTGTCATAGGT 57.653 33.333 8.94 0.00 34.32 3.08
74 75 8.295288 GCATAATCTTCAATCCTTTGTCATAGG 58.705 37.037 3.03 3.03 34.32 2.57
75 76 9.064706 AGCATAATCTTCAATCCTTTGTCATAG 57.935 33.333 0.00 0.00 34.32 2.23
76 77 8.985315 AGCATAATCTTCAATCCTTTGTCATA 57.015 30.769 0.00 0.00 34.32 2.15
77 78 7.893124 AGCATAATCTTCAATCCTTTGTCAT 57.107 32.000 0.00 0.00 34.32 3.06
78 79 8.985315 ATAGCATAATCTTCAATCCTTTGTCA 57.015 30.769 0.00 0.00 34.32 3.58
79 80 9.060347 TGATAGCATAATCTTCAATCCTTTGTC 57.940 33.333 0.00 0.00 34.32 3.18
80 81 8.844244 GTGATAGCATAATCTTCAATCCTTTGT 58.156 33.333 0.00 0.00 34.32 2.83
81 82 9.064706 AGTGATAGCATAATCTTCAATCCTTTG 57.935 33.333 0.00 0.00 0.00 2.77
82 83 9.282569 GAGTGATAGCATAATCTTCAATCCTTT 57.717 33.333 0.00 0.00 0.00 3.11
83 84 8.435187 TGAGTGATAGCATAATCTTCAATCCTT 58.565 33.333 0.00 0.00 32.17 3.36
84 85 7.971201 TGAGTGATAGCATAATCTTCAATCCT 58.029 34.615 0.00 0.00 32.17 3.24
85 86 8.666573 CATGAGTGATAGCATAATCTTCAATCC 58.333 37.037 0.00 0.00 32.17 3.01
86 87 9.217278 ACATGAGTGATAGCATAATCTTCAATC 57.783 33.333 0.00 0.00 33.38 2.67
87 88 9.570468 AACATGAGTGATAGCATAATCTTCAAT 57.430 29.630 0.00 0.00 0.00 2.57
88 89 8.969260 AACATGAGTGATAGCATAATCTTCAA 57.031 30.769 0.00 0.00 0.00 2.69
116 117 4.439253 AGCAGGTGGTTAGAGAGTTTTT 57.561 40.909 0.00 0.00 0.00 1.94
117 118 4.439253 AAGCAGGTGGTTAGAGAGTTTT 57.561 40.909 0.00 0.00 33.51 2.43
118 119 4.439253 AAAGCAGGTGGTTAGAGAGTTT 57.561 40.909 0.00 0.00 35.00 2.66
119 120 5.306394 GTTAAAGCAGGTGGTTAGAGAGTT 58.694 41.667 0.00 0.00 35.00 3.01
120 121 4.262938 GGTTAAAGCAGGTGGTTAGAGAGT 60.263 45.833 0.00 0.00 35.00 3.24
121 122 4.254492 GGTTAAAGCAGGTGGTTAGAGAG 58.746 47.826 0.00 0.00 35.00 3.20
122 123 3.649023 TGGTTAAAGCAGGTGGTTAGAGA 59.351 43.478 0.00 0.00 35.00 3.10
123 124 4.015872 TGGTTAAAGCAGGTGGTTAGAG 57.984 45.455 0.00 0.00 35.00 2.43
124 125 4.202524 ACATGGTTAAAGCAGGTGGTTAGA 60.203 41.667 0.00 0.00 39.26 2.10
125 126 4.079253 ACATGGTTAAAGCAGGTGGTTAG 58.921 43.478 0.00 0.00 39.26 2.34
126 127 4.107127 ACATGGTTAAAGCAGGTGGTTA 57.893 40.909 0.00 0.00 39.26 2.85
127 128 2.957474 ACATGGTTAAAGCAGGTGGTT 58.043 42.857 0.00 0.00 39.26 3.67
128 129 2.675658 ACATGGTTAAAGCAGGTGGT 57.324 45.000 0.00 0.00 39.26 4.16
129 130 3.190535 GTGTACATGGTTAAAGCAGGTGG 59.809 47.826 0.00 0.00 40.95 4.61
130 131 3.818210 TGTGTACATGGTTAAAGCAGGTG 59.182 43.478 0.00 0.00 40.95 4.00
131 132 3.818773 GTGTGTACATGGTTAAAGCAGGT 59.181 43.478 0.00 0.00 43.33 4.00
132 133 3.190535 GGTGTGTACATGGTTAAAGCAGG 59.809 47.826 0.00 0.00 33.17 4.85
133 134 3.120338 CGGTGTGTACATGGTTAAAGCAG 60.120 47.826 0.00 0.00 0.00 4.24
134 135 2.809119 CGGTGTGTACATGGTTAAAGCA 59.191 45.455 0.00 0.00 0.00 3.91
135 136 2.413634 GCGGTGTGTACATGGTTAAAGC 60.414 50.000 0.00 0.00 0.00 3.51
136 137 2.160813 GGCGGTGTGTACATGGTTAAAG 59.839 50.000 0.00 0.00 0.00 1.85
137 138 2.152830 GGCGGTGTGTACATGGTTAAA 58.847 47.619 0.00 0.00 0.00 1.52
138 139 1.348366 AGGCGGTGTGTACATGGTTAA 59.652 47.619 0.00 0.00 0.00 2.01
139 140 0.978151 AGGCGGTGTGTACATGGTTA 59.022 50.000 0.00 0.00 0.00 2.85
140 141 0.109723 AAGGCGGTGTGTACATGGTT 59.890 50.000 0.00 0.00 0.00 3.67
141 142 0.321298 GAAGGCGGTGTGTACATGGT 60.321 55.000 0.00 0.00 0.00 3.55
142 143 0.321210 TGAAGGCGGTGTGTACATGG 60.321 55.000 0.00 0.00 0.00 3.66
143 144 1.196808 GTTGAAGGCGGTGTGTACATG 59.803 52.381 0.00 0.00 0.00 3.21
144 145 1.202710 TGTTGAAGGCGGTGTGTACAT 60.203 47.619 0.00 0.00 0.00 2.29
145 146 0.178301 TGTTGAAGGCGGTGTGTACA 59.822 50.000 0.00 0.00 0.00 2.90
146 147 0.865769 CTGTTGAAGGCGGTGTGTAC 59.134 55.000 0.00 0.00 0.00 2.90
147 148 0.882927 GCTGTTGAAGGCGGTGTGTA 60.883 55.000 0.00 0.00 0.00 2.90
148 149 2.186826 GCTGTTGAAGGCGGTGTGT 61.187 57.895 0.00 0.00 0.00 3.72
149 150 2.639286 GCTGTTGAAGGCGGTGTG 59.361 61.111 0.00 0.00 0.00 3.82
150 151 2.972505 CGCTGTTGAAGGCGGTGT 60.973 61.111 4.86 0.00 46.42 4.16
161 162 1.005394 CGGAGTACCAACCGCTGTT 60.005 57.895 10.00 0.00 42.55 3.16
162 163 2.654877 CGGAGTACCAACCGCTGT 59.345 61.111 10.00 0.00 42.55 4.40
167 168 1.767759 TAGGTAGCGGAGTACCAACC 58.232 55.000 9.03 0.00 44.53 3.77
168 169 4.339247 TGTTATAGGTAGCGGAGTACCAAC 59.661 45.833 9.03 6.02 44.53 3.77
169 170 4.535781 TGTTATAGGTAGCGGAGTACCAA 58.464 43.478 9.03 0.00 44.53 3.67
170 171 4.169059 TGTTATAGGTAGCGGAGTACCA 57.831 45.455 9.03 0.00 44.53 3.25
171 172 5.520376 TTTGTTATAGGTAGCGGAGTACC 57.480 43.478 0.00 0.00 42.68 3.34
195 196 9.114952 GGCTCTTCTCTTTTGTAGCTTATTATT 57.885 33.333 0.00 0.00 0.00 1.40
196 197 8.490311 AGGCTCTTCTCTTTTGTAGCTTATTAT 58.510 33.333 0.00 0.00 0.00 1.28
197 198 7.852263 AGGCTCTTCTCTTTTGTAGCTTATTA 58.148 34.615 0.00 0.00 0.00 0.98
198 199 6.716284 AGGCTCTTCTCTTTTGTAGCTTATT 58.284 36.000 0.00 0.00 0.00 1.40
199 200 6.306643 AGGCTCTTCTCTTTTGTAGCTTAT 57.693 37.500 0.00 0.00 0.00 1.73
200 201 5.746990 AGGCTCTTCTCTTTTGTAGCTTA 57.253 39.130 0.00 0.00 0.00 3.09
201 202 4.632327 AGGCTCTTCTCTTTTGTAGCTT 57.368 40.909 0.00 0.00 0.00 3.74
202 203 4.632327 AAGGCTCTTCTCTTTTGTAGCT 57.368 40.909 0.00 0.00 0.00 3.32
203 204 5.697473 AAAAGGCTCTTCTCTTTTGTAGC 57.303 39.130 0.00 0.00 40.41 3.58
204 205 7.264373 TGAAAAAGGCTCTTCTCTTTTGTAG 57.736 36.000 9.81 0.00 40.87 2.74
205 206 7.823745 ATGAAAAAGGCTCTTCTCTTTTGTA 57.176 32.000 9.81 0.00 40.87 2.41
206 207 6.721704 ATGAAAAAGGCTCTTCTCTTTTGT 57.278 33.333 9.81 0.00 40.87 2.83
207 208 9.533253 TTTAATGAAAAAGGCTCTTCTCTTTTG 57.467 29.630 9.81 0.00 40.87 2.44
208 209 9.755804 CTTTAATGAAAAAGGCTCTTCTCTTTT 57.244 29.630 9.81 2.20 42.76 2.27
209 210 9.136323 TCTTTAATGAAAAAGGCTCTTCTCTTT 57.864 29.630 9.81 0.00 37.13 2.52
210 211 8.572185 GTCTTTAATGAAAAAGGCTCTTCTCTT 58.428 33.333 9.81 6.79 37.93 2.85
211 212 7.941790 AGTCTTTAATGAAAAAGGCTCTTCTCT 59.058 33.333 9.81 1.80 45.89 3.10
212 213 8.105097 AGTCTTTAATGAAAAAGGCTCTTCTC 57.895 34.615 9.81 0.00 45.89 2.87
213 214 9.574516 TTAGTCTTTAATGAAAAAGGCTCTTCT 57.425 29.630 6.72 0.00 45.89 2.85
231 232 9.905713 TGGCTATGTAGAAATGATTTAGTCTTT 57.094 29.630 0.00 0.00 0.00 2.52
232 233 9.905713 TTGGCTATGTAGAAATGATTTAGTCTT 57.094 29.630 0.00 0.00 0.00 3.01
233 234 9.905713 TTTGGCTATGTAGAAATGATTTAGTCT 57.094 29.630 0.00 0.00 0.00 3.24
235 236 8.624776 GCTTTGGCTATGTAGAAATGATTTAGT 58.375 33.333 0.00 0.00 35.22 2.24
236 237 8.078596 GGCTTTGGCTATGTAGAAATGATTTAG 58.921 37.037 0.00 0.00 38.73 1.85
237 238 7.559533 TGGCTTTGGCTATGTAGAAATGATTTA 59.440 33.333 0.00 0.00 38.73 1.40
238 239 6.380846 TGGCTTTGGCTATGTAGAAATGATTT 59.619 34.615 0.00 0.00 38.73 2.17
239 240 5.893255 TGGCTTTGGCTATGTAGAAATGATT 59.107 36.000 0.00 0.00 38.73 2.57
240 241 5.300286 GTGGCTTTGGCTATGTAGAAATGAT 59.700 40.000 0.00 0.00 38.73 2.45
241 242 4.640201 GTGGCTTTGGCTATGTAGAAATGA 59.360 41.667 0.00 0.00 38.73 2.57
242 243 4.202050 GGTGGCTTTGGCTATGTAGAAATG 60.202 45.833 0.00 0.00 38.73 2.32
243 244 3.954258 GGTGGCTTTGGCTATGTAGAAAT 59.046 43.478 0.00 0.00 38.73 2.17
244 245 3.245087 TGGTGGCTTTGGCTATGTAGAAA 60.245 43.478 0.00 0.00 38.73 2.52
245 246 2.307392 TGGTGGCTTTGGCTATGTAGAA 59.693 45.455 0.00 0.00 38.73 2.10
246 247 1.912731 TGGTGGCTTTGGCTATGTAGA 59.087 47.619 0.00 0.00 38.73 2.59
247 248 2.418368 TGGTGGCTTTGGCTATGTAG 57.582 50.000 0.00 0.00 38.73 2.74
248 249 3.458118 ACTATGGTGGCTTTGGCTATGTA 59.542 43.478 0.00 0.00 38.73 2.29
249 250 2.242196 ACTATGGTGGCTTTGGCTATGT 59.758 45.455 0.00 0.00 38.73 2.29
250 251 2.620115 CACTATGGTGGCTTTGGCTATG 59.380 50.000 0.32 0.00 39.59 2.23
251 252 2.242196 ACACTATGGTGGCTTTGGCTAT 59.758 45.455 14.25 0.00 46.85 2.97
252 253 1.633432 ACACTATGGTGGCTTTGGCTA 59.367 47.619 14.25 0.00 46.85 3.93
253 254 0.405585 ACACTATGGTGGCTTTGGCT 59.594 50.000 14.25 0.00 46.85 4.75
254 255 1.256812 AACACTATGGTGGCTTTGGC 58.743 50.000 14.25 0.00 46.85 4.52
255 256 5.461032 TTAAAACACTATGGTGGCTTTGG 57.539 39.130 14.25 0.00 46.85 3.28
256 257 7.961325 AATTTAAAACACTATGGTGGCTTTG 57.039 32.000 14.25 0.00 46.85 2.77
279 280 9.619316 CATTTGTTGAACGGTATCTCAAATAAA 57.381 29.630 11.11 9.00 35.30 1.40
280 281 9.004717 TCATTTGTTGAACGGTATCTCAAATAA 57.995 29.630 11.11 4.13 35.30 1.40
281 282 8.554835 TCATTTGTTGAACGGTATCTCAAATA 57.445 30.769 11.11 0.00 35.30 1.40
282 283 7.447374 TCATTTGTTGAACGGTATCTCAAAT 57.553 32.000 0.00 0.00 36.29 2.32
283 284 6.869315 TCATTTGTTGAACGGTATCTCAAA 57.131 33.333 0.00 0.00 33.52 2.69
284 285 6.652900 TGATCATTTGTTGAACGGTATCTCAA 59.347 34.615 0.00 0.00 38.03 3.02
285 286 6.169800 TGATCATTTGTTGAACGGTATCTCA 58.830 36.000 0.00 0.00 38.03 3.27
286 287 6.662414 TGATCATTTGTTGAACGGTATCTC 57.338 37.500 0.00 0.00 38.03 2.75
287 288 7.447374 TTTGATCATTTGTTGAACGGTATCT 57.553 32.000 0.00 0.00 38.03 1.98
288 289 8.514136 TTTTTGATCATTTGTTGAACGGTATC 57.486 30.769 0.00 0.00 38.03 2.24
291 292 9.487790 AATATTTTTGATCATTTGTTGAACGGT 57.512 25.926 0.00 0.00 38.03 4.83
292 293 9.743937 CAATATTTTTGATCATTTGTTGAACGG 57.256 29.630 0.00 0.00 38.03 4.44
320 321 6.149633 GCGAGACAATCAAACACCTATTTTT 58.850 36.000 0.00 0.00 0.00 1.94
321 322 5.335661 GGCGAGACAATCAAACACCTATTTT 60.336 40.000 0.00 0.00 0.00 1.82
322 323 4.156008 GGCGAGACAATCAAACACCTATTT 59.844 41.667 0.00 0.00 0.00 1.40
323 324 3.689649 GGCGAGACAATCAAACACCTATT 59.310 43.478 0.00 0.00 0.00 1.73
324 325 3.270877 GGCGAGACAATCAAACACCTAT 58.729 45.455 0.00 0.00 0.00 2.57
325 326 2.037902 TGGCGAGACAATCAAACACCTA 59.962 45.455 0.00 0.00 0.00 3.08
326 327 1.202758 TGGCGAGACAATCAAACACCT 60.203 47.619 0.00 0.00 0.00 4.00
327 328 1.234821 TGGCGAGACAATCAAACACC 58.765 50.000 0.00 0.00 0.00 4.16
328 329 2.855180 CATGGCGAGACAATCAAACAC 58.145 47.619 0.00 0.00 0.00 3.32
329 330 1.199789 GCATGGCGAGACAATCAAACA 59.800 47.619 0.00 0.00 0.00 2.83
330 331 1.199789 TGCATGGCGAGACAATCAAAC 59.800 47.619 0.00 0.00 0.00 2.93
331 332 1.532523 TGCATGGCGAGACAATCAAA 58.467 45.000 0.00 0.00 0.00 2.69
332 333 1.753930 ATGCATGGCGAGACAATCAA 58.246 45.000 0.00 0.00 0.00 2.57
333 334 1.402613 CAATGCATGGCGAGACAATCA 59.597 47.619 0.00 0.00 0.00 2.57
334 335 1.672363 TCAATGCATGGCGAGACAATC 59.328 47.619 0.00 0.00 0.00 2.67
335 336 1.402968 GTCAATGCATGGCGAGACAAT 59.597 47.619 0.00 0.00 0.00 2.71
336 337 0.804364 GTCAATGCATGGCGAGACAA 59.196 50.000 0.00 0.00 0.00 3.18
337 338 2.470156 GTCAATGCATGGCGAGACA 58.530 52.632 0.00 0.00 0.00 3.41
343 344 2.121786 CAAATAGCGTCAATGCATGGC 58.878 47.619 0.00 1.78 37.31 4.40
344 345 2.358582 TCCAAATAGCGTCAATGCATGG 59.641 45.455 0.00 0.00 37.31 3.66
345 346 3.696281 TCCAAATAGCGTCAATGCATG 57.304 42.857 0.00 0.00 37.31 4.06
346 347 3.884693 TCATCCAAATAGCGTCAATGCAT 59.115 39.130 0.00 0.00 37.31 3.96
347 348 3.065233 GTCATCCAAATAGCGTCAATGCA 59.935 43.478 0.00 0.00 37.31 3.96
348 349 3.313526 AGTCATCCAAATAGCGTCAATGC 59.686 43.478 0.00 0.00 0.00 3.56
349 350 4.571984 TCAGTCATCCAAATAGCGTCAATG 59.428 41.667 0.00 0.00 0.00 2.82
350 351 4.572389 GTCAGTCATCCAAATAGCGTCAAT 59.428 41.667 0.00 0.00 0.00 2.57
351 352 3.932710 GTCAGTCATCCAAATAGCGTCAA 59.067 43.478 0.00 0.00 0.00 3.18
352 353 3.521560 GTCAGTCATCCAAATAGCGTCA 58.478 45.455 0.00 0.00 0.00 4.35
353 354 2.866762 GGTCAGTCATCCAAATAGCGTC 59.133 50.000 0.00 0.00 0.00 5.19
354 355 2.236146 TGGTCAGTCATCCAAATAGCGT 59.764 45.455 0.00 0.00 0.00 5.07
355 356 2.905075 TGGTCAGTCATCCAAATAGCG 58.095 47.619 0.00 0.00 0.00 4.26
356 357 4.202441 ACATGGTCAGTCATCCAAATAGC 58.798 43.478 0.00 0.00 37.27 2.97
357 358 6.820335 TCTACATGGTCAGTCATCCAAATAG 58.180 40.000 0.00 0.00 37.27 1.73
358 359 6.806668 TCTACATGGTCAGTCATCCAAATA 57.193 37.500 0.00 0.00 37.27 1.40
359 360 5.698741 TCTACATGGTCAGTCATCCAAAT 57.301 39.130 0.00 0.00 37.27 2.32
360 361 5.497464 TTCTACATGGTCAGTCATCCAAA 57.503 39.130 0.00 0.00 37.27 3.28
361 362 5.045651 ACATTCTACATGGTCAGTCATCCAA 60.046 40.000 0.00 0.00 37.27 3.53
362 363 4.471025 ACATTCTACATGGTCAGTCATCCA 59.529 41.667 0.00 0.00 38.14 3.41
363 364 5.028549 ACATTCTACATGGTCAGTCATCC 57.971 43.478 0.00 0.00 0.00 3.51
364 365 6.108687 TGAACATTCTACATGGTCAGTCATC 58.891 40.000 0.00 0.00 40.46 2.92
365 366 6.053632 TGAACATTCTACATGGTCAGTCAT 57.946 37.500 0.00 0.00 40.46 3.06
366 367 5.482163 TGAACATTCTACATGGTCAGTCA 57.518 39.130 0.00 0.00 40.46 3.41
367 368 5.163814 GCTTGAACATTCTACATGGTCAGTC 60.164 44.000 2.96 0.00 45.25 3.51
368 369 4.697352 GCTTGAACATTCTACATGGTCAGT 59.303 41.667 2.96 0.00 45.25 3.41
369 370 4.940046 AGCTTGAACATTCTACATGGTCAG 59.060 41.667 2.96 0.41 45.25 3.51
370 371 4.910195 AGCTTGAACATTCTACATGGTCA 58.090 39.130 0.00 0.00 43.27 4.02
371 372 5.634896 CAAGCTTGAACATTCTACATGGTC 58.365 41.667 22.31 0.00 36.34 4.02
372 373 4.082571 GCAAGCTTGAACATTCTACATGGT 60.083 41.667 30.39 0.00 0.00 3.55
373 374 4.082625 TGCAAGCTTGAACATTCTACATGG 60.083 41.667 30.39 0.00 0.00 3.66
374 375 5.050644 TGCAAGCTTGAACATTCTACATG 57.949 39.130 30.39 0.00 0.00 3.21
375 376 5.909621 ATGCAAGCTTGAACATTCTACAT 57.090 34.783 30.39 16.16 0.00 2.29
376 377 5.241285 TCAATGCAAGCTTGAACATTCTACA 59.759 36.000 30.39 14.59 30.54 2.74
377 378 5.702865 TCAATGCAAGCTTGAACATTCTAC 58.297 37.500 30.39 9.17 30.54 2.59
378 379 5.963176 TCAATGCAAGCTTGAACATTCTA 57.037 34.783 30.39 15.99 30.54 2.10
379 380 4.859304 TCAATGCAAGCTTGAACATTCT 57.141 36.364 30.39 7.88 30.54 2.40
380 381 5.910637 TTTCAATGCAAGCTTGAACATTC 57.089 34.783 30.39 11.38 41.10 2.67
381 382 6.680874 TTTTTCAATGCAAGCTTGAACATT 57.319 29.167 30.39 24.41 41.10 2.71
401 402 7.444183 TGACGAGATAATCAAACACCTCTTTTT 59.556 33.333 0.00 0.00 0.00 1.94
402 403 6.934645 TGACGAGATAATCAAACACCTCTTTT 59.065 34.615 0.00 0.00 0.00 2.27
403 404 6.464222 TGACGAGATAATCAAACACCTCTTT 58.536 36.000 0.00 0.00 0.00 2.52
404 405 6.037786 TGACGAGATAATCAAACACCTCTT 57.962 37.500 0.00 0.00 0.00 2.85
405 406 5.661056 TGACGAGATAATCAAACACCTCT 57.339 39.130 0.00 0.00 0.00 3.69
406 407 6.042777 TCATGACGAGATAATCAAACACCTC 58.957 40.000 0.00 0.00 0.00 3.85
407 408 5.977635 TCATGACGAGATAATCAAACACCT 58.022 37.500 0.00 0.00 0.00 4.00
408 409 5.812642 ACTCATGACGAGATAATCAAACACC 59.187 40.000 0.00 0.00 45.45 4.16
409 410 6.893958 ACTCATGACGAGATAATCAAACAC 57.106 37.500 0.00 0.00 45.45 3.32
437 438 8.395633 CGAATTGGATTTTCGGAAGTATAGTTT 58.604 33.333 0.00 0.00 41.62 2.66
438 439 7.916552 CGAATTGGATTTTCGGAAGTATAGTT 58.083 34.615 0.00 0.00 41.62 2.24
439 440 7.478520 CGAATTGGATTTTCGGAAGTATAGT 57.521 36.000 0.00 0.00 41.62 2.12
449 450 2.285834 CGAGAGCCGAATTGGATTTTCG 60.286 50.000 0.00 0.00 44.17 3.46
450 451 2.032178 CCGAGAGCCGAATTGGATTTTC 59.968 50.000 0.00 0.00 42.00 2.29
451 452 2.017049 CCGAGAGCCGAATTGGATTTT 58.983 47.619 0.00 0.00 42.00 1.82
452 453 1.209504 TCCGAGAGCCGAATTGGATTT 59.790 47.619 0.00 0.00 42.00 2.17
453 454 0.830648 TCCGAGAGCCGAATTGGATT 59.169 50.000 0.00 0.00 42.00 3.01
454 455 1.051812 ATCCGAGAGCCGAATTGGAT 58.948 50.000 0.00 0.00 42.00 3.41
455 456 0.104855 CATCCGAGAGCCGAATTGGA 59.895 55.000 0.00 0.00 42.00 3.53
456 457 1.502163 GCATCCGAGAGCCGAATTGG 61.502 60.000 0.00 0.00 41.76 3.16
457 458 0.811219 TGCATCCGAGAGCCGAATTG 60.811 55.000 0.00 0.00 41.76 2.32
458 459 0.811616 GTGCATCCGAGAGCCGAATT 60.812 55.000 0.00 0.00 41.76 2.17
459 460 1.227380 GTGCATCCGAGAGCCGAAT 60.227 57.895 0.00 0.00 41.76 3.34
460 461 2.184322 GTGCATCCGAGAGCCGAA 59.816 61.111 0.00 0.00 41.76 4.30
461 462 4.193334 CGTGCATCCGAGAGCCGA 62.193 66.667 0.00 0.00 41.76 5.54
462 463 4.498520 ACGTGCATCCGAGAGCCG 62.499 66.667 3.48 0.00 38.18 5.52
463 464 2.887568 CACGTGCATCCGAGAGCC 60.888 66.667 0.82 0.00 0.00 4.70
464 465 3.558411 GCACGTGCATCCGAGAGC 61.558 66.667 34.52 3.22 41.59 4.09
465 466 1.875813 GAGCACGTGCATCCGAGAG 60.876 63.158 39.21 0.00 45.16 3.20
466 467 2.181777 GAGCACGTGCATCCGAGA 59.818 61.111 39.21 0.00 45.16 4.04
467 468 2.887568 GGAGCACGTGCATCCGAG 60.888 66.667 39.21 1.57 45.16 4.63
468 469 3.381983 AGGAGCACGTGCATCCGA 61.382 61.111 39.21 0.00 45.16 4.55
469 470 3.190849 CAGGAGCACGTGCATCCG 61.191 66.667 39.21 28.56 45.16 4.18
470 471 1.812922 CTCAGGAGCACGTGCATCC 60.813 63.158 39.21 35.83 45.16 3.51
471 472 3.791539 CTCAGGAGCACGTGCATC 58.208 61.111 39.21 30.22 45.16 3.91
481 482 5.997746 TCAATAATTATTTCCGGCTCAGGAG 59.002 40.000 8.01 0.00 41.98 3.69
482 483 5.935945 TCAATAATTATTTCCGGCTCAGGA 58.064 37.500 8.01 0.00 38.79 3.86
483 484 6.633500 TTCAATAATTATTTCCGGCTCAGG 57.367 37.500 8.01 0.00 0.00 3.86
484 485 8.137437 ACATTTCAATAATTATTTCCGGCTCAG 58.863 33.333 8.01 0.00 0.00 3.35
485 486 8.006298 ACATTTCAATAATTATTTCCGGCTCA 57.994 30.769 8.01 0.00 0.00 4.26
486 487 9.959749 TTACATTTCAATAATTATTTCCGGCTC 57.040 29.630 8.01 0.00 0.00 4.70
514 515 7.537596 TGGATGTGACTATGAAACCATTTTT 57.462 32.000 0.00 0.00 0.00 1.94
515 516 7.537596 TTGGATGTGACTATGAAACCATTTT 57.462 32.000 0.00 0.00 0.00 1.82
516 517 7.378181 GTTTGGATGTGACTATGAAACCATTT 58.622 34.615 0.00 0.00 0.00 2.32
517 518 6.349280 CGTTTGGATGTGACTATGAAACCATT 60.349 38.462 0.00 0.00 0.00 3.16
518 519 5.123820 CGTTTGGATGTGACTATGAAACCAT 59.876 40.000 0.00 0.00 0.00 3.55
519 520 4.454161 CGTTTGGATGTGACTATGAAACCA 59.546 41.667 0.00 0.00 0.00 3.67
520 521 4.454504 ACGTTTGGATGTGACTATGAAACC 59.545 41.667 0.00 0.00 0.00 3.27
521 522 5.607119 ACGTTTGGATGTGACTATGAAAC 57.393 39.130 0.00 0.00 0.00 2.78
522 523 6.932400 AGTAACGTTTGGATGTGACTATGAAA 59.068 34.615 5.91 0.00 35.16 2.69
523 524 6.460781 AGTAACGTTTGGATGTGACTATGAA 58.539 36.000 5.91 0.00 35.16 2.57
524 525 6.032956 AGTAACGTTTGGATGTGACTATGA 57.967 37.500 5.91 0.00 35.16 2.15
525 526 6.147164 ACAAGTAACGTTTGGATGTGACTATG 59.853 38.462 5.91 5.41 35.76 2.23
526 527 6.228258 ACAAGTAACGTTTGGATGTGACTAT 58.772 36.000 5.91 0.00 35.76 2.12
527 528 5.603596 ACAAGTAACGTTTGGATGTGACTA 58.396 37.500 5.91 0.00 35.76 2.59
528 529 4.448210 ACAAGTAACGTTTGGATGTGACT 58.552 39.130 5.91 0.00 37.99 3.41
529 530 4.806342 ACAAGTAACGTTTGGATGTGAC 57.194 40.909 5.91 0.00 0.00 3.67
530 531 6.922247 TTTACAAGTAACGTTTGGATGTGA 57.078 33.333 5.91 1.53 0.00 3.58
531 532 7.972623 TTTTTACAAGTAACGTTTGGATGTG 57.027 32.000 5.91 0.00 0.00 3.21
560 561 8.810041 AGATCAAAATGCTTAACCTTTTCATCT 58.190 29.630 0.00 0.00 0.00 2.90
561 562 8.866956 CAGATCAAAATGCTTAACCTTTTCATC 58.133 33.333 0.00 0.00 0.00 2.92
562 563 7.332678 GCAGATCAAAATGCTTAACCTTTTCAT 59.667 33.333 0.00 0.00 39.38 2.57
563 564 6.646240 GCAGATCAAAATGCTTAACCTTTTCA 59.354 34.615 0.00 0.00 39.38 2.69
564 565 6.646240 TGCAGATCAAAATGCTTAACCTTTTC 59.354 34.615 6.27 0.00 42.98 2.29
565 566 6.424812 GTGCAGATCAAAATGCTTAACCTTTT 59.575 34.615 6.27 0.00 42.98 2.27
566 567 5.928264 GTGCAGATCAAAATGCTTAACCTTT 59.072 36.000 6.27 0.00 42.98 3.11
567 568 5.010922 TGTGCAGATCAAAATGCTTAACCTT 59.989 36.000 6.27 0.00 42.98 3.50
568 569 4.523943 TGTGCAGATCAAAATGCTTAACCT 59.476 37.500 6.27 0.00 42.98 3.50
569 570 4.808558 TGTGCAGATCAAAATGCTTAACC 58.191 39.130 6.27 0.00 42.98 2.85
570 571 6.768029 TTTGTGCAGATCAAAATGCTTAAC 57.232 33.333 6.27 0.00 42.98 2.01
571 572 7.783090 TTTTTGTGCAGATCAAAATGCTTAA 57.217 28.000 12.76 0.00 41.97 1.85
615 616 9.934190 GCATCAGTGAAAAACAAATTTAAATGT 57.066 25.926 0.39 0.00 0.00 2.71
616 617 9.932699 TGCATCAGTGAAAAACAAATTTAAATG 57.067 25.926 0.39 0.00 0.00 2.32
617 618 9.934190 GTGCATCAGTGAAAAACAAATTTAAAT 57.066 25.926 0.00 0.00 0.00 1.40
618 619 9.160496 AGTGCATCAGTGAAAAACAAATTTAAA 57.840 25.926 0.00 0.00 0.00 1.52
619 620 8.602328 CAGTGCATCAGTGAAAAACAAATTTAA 58.398 29.630 0.00 0.00 36.99 1.52
620 621 7.254387 GCAGTGCATCAGTGAAAAACAAATTTA 60.254 33.333 11.09 0.00 36.99 1.40
621 622 6.457257 GCAGTGCATCAGTGAAAAACAAATTT 60.457 34.615 11.09 0.00 36.99 1.82
622 623 5.006941 GCAGTGCATCAGTGAAAAACAAATT 59.993 36.000 11.09 0.00 36.99 1.82
623 624 4.508861 GCAGTGCATCAGTGAAAAACAAAT 59.491 37.500 11.09 0.00 36.99 2.32
624 625 3.864583 GCAGTGCATCAGTGAAAAACAAA 59.135 39.130 11.09 0.00 36.99 2.83
625 626 3.130869 AGCAGTGCATCAGTGAAAAACAA 59.869 39.130 19.20 0.00 36.99 2.83
626 627 2.689471 AGCAGTGCATCAGTGAAAAACA 59.311 40.909 19.20 0.00 36.99 2.83
627 628 3.360249 AGCAGTGCATCAGTGAAAAAC 57.640 42.857 19.20 0.00 36.99 2.43
628 629 4.136796 AGTAGCAGTGCATCAGTGAAAAA 58.863 39.130 19.20 0.00 36.99 1.94
629 630 3.743521 AGTAGCAGTGCATCAGTGAAAA 58.256 40.909 19.20 0.00 36.99 2.29
630 631 3.329386 GAGTAGCAGTGCATCAGTGAAA 58.671 45.455 19.20 0.00 36.99 2.69
631 632 2.672195 CGAGTAGCAGTGCATCAGTGAA 60.672 50.000 19.20 0.00 36.99 3.18
632 633 1.135286 CGAGTAGCAGTGCATCAGTGA 60.135 52.381 19.20 0.00 36.99 3.41
633 634 1.275505 CGAGTAGCAGTGCATCAGTG 58.724 55.000 19.20 0.00 37.80 3.66
634 635 3.729356 CGAGTAGCAGTGCATCAGT 57.271 52.632 19.20 4.61 0.00 3.41
646 647 5.907197 ACCGATAATTTTCATGCGAGTAG 57.093 39.130 0.00 0.00 0.00 2.57
647 648 7.570507 GCATAACCGATAATTTTCATGCGAGTA 60.571 37.037 4.13 0.00 0.00 2.59
648 649 6.658831 CATAACCGATAATTTTCATGCGAGT 58.341 36.000 0.00 0.00 0.00 4.18
649 650 5.565259 GCATAACCGATAATTTTCATGCGAG 59.435 40.000 4.13 0.00 0.00 5.03
650 651 5.238432 AGCATAACCGATAATTTTCATGCGA 59.762 36.000 10.88 0.00 41.75 5.10
651 652 5.451908 AGCATAACCGATAATTTTCATGCG 58.548 37.500 10.88 0.00 41.75 4.73
652 653 6.346040 GCAAGCATAACCGATAATTTTCATGC 60.346 38.462 9.47 9.47 38.20 4.06
653 654 6.129378 CGCAAGCATAACCGATAATTTTCATG 60.129 38.462 0.00 0.00 0.00 3.07
654 655 5.914635 CGCAAGCATAACCGATAATTTTCAT 59.085 36.000 0.00 0.00 0.00 2.57
655 656 5.270083 CGCAAGCATAACCGATAATTTTCA 58.730 37.500 0.00 0.00 0.00 2.69
656 657 4.675114 CCGCAAGCATAACCGATAATTTTC 59.325 41.667 0.00 0.00 0.00 2.29
657 658 4.499019 CCCGCAAGCATAACCGATAATTTT 60.499 41.667 0.00 0.00 0.00 1.82
658 659 3.004315 CCCGCAAGCATAACCGATAATTT 59.996 43.478 0.00 0.00 0.00 1.82
659 660 2.552315 CCCGCAAGCATAACCGATAATT 59.448 45.455 0.00 0.00 0.00 1.40
660 661 2.151202 CCCGCAAGCATAACCGATAAT 58.849 47.619 0.00 0.00 0.00 1.28
661 662 1.134340 ACCCGCAAGCATAACCGATAA 60.134 47.619 0.00 0.00 0.00 1.75
662 663 0.466543 ACCCGCAAGCATAACCGATA 59.533 50.000 0.00 0.00 0.00 2.92
663 664 1.095228 CACCCGCAAGCATAACCGAT 61.095 55.000 0.00 0.00 0.00 4.18
664 665 1.743623 CACCCGCAAGCATAACCGA 60.744 57.895 0.00 0.00 0.00 4.69
665 666 2.791256 CACCCGCAAGCATAACCG 59.209 61.111 0.00 0.00 0.00 4.44
666 667 2.489751 GCACCCGCAAGCATAACC 59.510 61.111 0.00 0.00 38.36 2.85
681 682 3.429410 CGGTGAGATCATAGTGAAGTGCA 60.429 47.826 0.00 0.00 0.00 4.57
682 683 3.119291 CGGTGAGATCATAGTGAAGTGC 58.881 50.000 0.00 0.00 0.00 4.40
683 684 4.336713 TCTCGGTGAGATCATAGTGAAGTG 59.663 45.833 0.00 0.00 33.35 3.16
684 685 4.527944 TCTCGGTGAGATCATAGTGAAGT 58.472 43.478 0.00 0.00 33.35 3.01
685 686 5.703978 ATCTCGGTGAGATCATAGTGAAG 57.296 43.478 3.51 0.00 45.03 3.02
696 697 3.552890 CGCATCCATTAATCTCGGTGAGA 60.553 47.826 0.00 0.00 43.20 3.27
697 698 2.733552 CGCATCCATTAATCTCGGTGAG 59.266 50.000 0.00 0.00 0.00 3.51
698 699 2.547855 CCGCATCCATTAATCTCGGTGA 60.548 50.000 0.00 0.00 0.00 4.02
699 700 1.800586 CCGCATCCATTAATCTCGGTG 59.199 52.381 0.00 0.00 0.00 4.94
700 701 1.270839 CCCGCATCCATTAATCTCGGT 60.271 52.381 0.00 0.00 34.16 4.69
701 702 1.270839 ACCCGCATCCATTAATCTCGG 60.271 52.381 0.00 0.00 35.60 4.63
702 703 1.800586 CACCCGCATCCATTAATCTCG 59.199 52.381 0.00 0.00 0.00 4.04
703 704 1.537202 GCACCCGCATCCATTAATCTC 59.463 52.381 0.00 0.00 38.36 2.75
704 705 1.133823 TGCACCCGCATCCATTAATCT 60.134 47.619 0.00 0.00 45.36 2.40
705 706 1.317613 TGCACCCGCATCCATTAATC 58.682 50.000 0.00 0.00 45.36 1.75
706 707 3.511362 TGCACCCGCATCCATTAAT 57.489 47.368 0.00 0.00 45.36 1.40
716 717 1.948104 TAATATGAGTGTGCACCCGC 58.052 50.000 15.69 5.01 39.24 6.13
717 718 3.498397 GGAATAATATGAGTGTGCACCCG 59.502 47.826 15.69 0.00 0.00 5.28
718 719 4.275936 GTGGAATAATATGAGTGTGCACCC 59.724 45.833 15.69 1.68 0.00 4.61
719 720 4.881273 TGTGGAATAATATGAGTGTGCACC 59.119 41.667 15.69 5.76 0.00 5.01
720 721 5.353956 TGTGTGGAATAATATGAGTGTGCAC 59.646 40.000 10.75 10.75 0.00 4.57
721 722 5.495640 TGTGTGGAATAATATGAGTGTGCA 58.504 37.500 0.00 0.00 0.00 4.57
722 723 6.432936 CATGTGTGGAATAATATGAGTGTGC 58.567 40.000 0.00 0.00 0.00 4.57
723 724 6.432936 GCATGTGTGGAATAATATGAGTGTG 58.567 40.000 0.00 0.00 0.00 3.82
724 725 5.237127 CGCATGTGTGGAATAATATGAGTGT 59.763 40.000 0.00 0.00 0.00 3.55
725 726 5.682869 CGCATGTGTGGAATAATATGAGTG 58.317 41.667 0.00 0.00 0.00 3.51
726 727 5.929697 CGCATGTGTGGAATAATATGAGT 57.070 39.130 0.00 0.00 0.00 3.41
751 752 4.122046 CGGTGAGATCATATTGAAGTGCA 58.878 43.478 0.00 0.00 0.00 4.57
786 787 3.175109 ACGGATGGAAACCTTCGATAC 57.825 47.619 0.00 0.00 0.00 2.24
791 792 4.201783 CGACATAAACGGATGGAAACCTTC 60.202 45.833 0.00 0.00 0.00 3.46
793 794 3.267483 CGACATAAACGGATGGAAACCT 58.733 45.455 0.00 0.00 0.00 3.50
830 840 6.128145 TGTTTTTAAAAGCAAAAGGAACTGCC 60.128 34.615 14.23 0.00 40.86 4.85
844 854 8.810794 GTCGTTTCGTTTGTTTGTTTTTAAAAG 58.189 29.630 0.14 0.00 0.00 2.27
845 855 8.538039 AGTCGTTTCGTTTGTTTGTTTTTAAAA 58.462 25.926 0.00 0.00 0.00 1.52
846 856 7.997104 CAGTCGTTTCGTTTGTTTGTTTTTAAA 59.003 29.630 0.00 0.00 0.00 1.52
853 863 2.095668 TGCAGTCGTTTCGTTTGTTTGT 60.096 40.909 0.00 0.00 0.00 2.83
862 872 2.900122 AATGGATTGCAGTCGTTTCG 57.100 45.000 2.84 0.00 0.00 3.46
868 878 5.822519 TGTGGTCTATTAATGGATTGCAGTC 59.177 40.000 4.69 0.00 0.00 3.51
869 879 5.754782 TGTGGTCTATTAATGGATTGCAGT 58.245 37.500 4.69 0.00 0.00 4.40
870 880 6.889301 ATGTGGTCTATTAATGGATTGCAG 57.111 37.500 4.69 0.00 0.00 4.41
878 888 8.420374 AGTCGTGTTAATGTGGTCTATTAATG 57.580 34.615 0.00 0.00 33.87 1.90
885 895 2.555325 TCGAGTCGTGTTAATGTGGTCT 59.445 45.455 13.12 0.00 0.00 3.85
899 909 1.266786 ACGAACGCTTTGTCGAGTCG 61.267 55.000 6.09 6.09 41.95 4.18
905 915 0.384353 GGAGCAACGAACGCTTTGTC 60.384 55.000 0.00 0.00 40.63 3.18
911 921 2.673976 TTTAAAGGAGCAACGAACGC 57.326 45.000 0.00 0.00 0.00 4.84
920 930 6.575162 TCTTTCAGACCATTTTAAAGGAGC 57.425 37.500 0.71 0.00 0.00 4.70
921 931 7.231519 AGGTTCTTTCAGACCATTTTAAAGGAG 59.768 37.037 0.71 0.00 0.00 3.69
964 996 7.953173 CGTATCTATTGATCGTGACTTCTAGAC 59.047 40.741 0.00 0.00 34.32 2.59
965 997 7.360185 GCGTATCTATTGATCGTGACTTCTAGA 60.360 40.741 0.00 0.00 34.32 2.43
966 998 6.739100 GCGTATCTATTGATCGTGACTTCTAG 59.261 42.308 0.00 0.00 34.32 2.43
967 999 6.204108 TGCGTATCTATTGATCGTGACTTCTA 59.796 38.462 0.00 0.00 34.32 2.10
968 1000 5.008712 TGCGTATCTATTGATCGTGACTTCT 59.991 40.000 0.00 0.00 34.32 2.85
969 1001 5.212934 TGCGTATCTATTGATCGTGACTTC 58.787 41.667 0.00 0.00 34.32 3.01
970 1002 5.183014 TGCGTATCTATTGATCGTGACTT 57.817 39.130 0.00 0.00 34.32 3.01
971 1003 4.276183 ACTGCGTATCTATTGATCGTGACT 59.724 41.667 0.00 0.00 34.32 3.41
972 1004 4.537965 ACTGCGTATCTATTGATCGTGAC 58.462 43.478 0.00 0.00 34.32 3.67
974 1006 4.537015 TGACTGCGTATCTATTGATCGTG 58.463 43.478 0.00 0.00 34.32 4.35
975 1007 4.830826 TGACTGCGTATCTATTGATCGT 57.169 40.909 0.00 0.00 34.32 3.73
976 1008 4.089208 GCTTGACTGCGTATCTATTGATCG 59.911 45.833 0.00 0.00 34.32 3.69
977 1009 4.984785 TGCTTGACTGCGTATCTATTGATC 59.015 41.667 0.00 0.00 33.40 2.92
979 1011 4.385358 TGCTTGACTGCGTATCTATTGA 57.615 40.909 0.00 0.00 35.36 2.57
982 1014 3.657634 CCATGCTTGACTGCGTATCTAT 58.342 45.455 0.22 0.00 35.36 1.98
983 1015 2.803133 GCCATGCTTGACTGCGTATCTA 60.803 50.000 0.22 0.00 35.36 1.98
984 1016 1.945387 CCATGCTTGACTGCGTATCT 58.055 50.000 0.22 0.00 35.36 1.98
985 1017 0.305922 GCCATGCTTGACTGCGTATC 59.694 55.000 0.22 0.00 35.36 2.24
987 1019 1.003959 TGCCATGCTTGACTGCGTA 60.004 52.632 0.22 0.00 35.36 4.42
988 1020 2.281692 TGCCATGCTTGACTGCGT 60.282 55.556 0.22 0.00 35.36 5.24
989 1021 2.177531 GTGCCATGCTTGACTGCG 59.822 61.111 0.22 0.00 35.36 5.18
990 1022 1.239296 TGAGTGCCATGCTTGACTGC 61.239 55.000 0.22 0.00 0.00 4.40
991 1023 1.199327 CTTGAGTGCCATGCTTGACTG 59.801 52.381 0.22 0.00 0.00 3.51
992 1024 1.531423 CTTGAGTGCCATGCTTGACT 58.469 50.000 0.22 0.00 0.00 3.41
1025 1057 0.114560 AAGGAAGAGGAGGGTGACGA 59.885 55.000 0.00 0.00 0.00 4.20
1083 1115 2.261361 CAGCACCGGTCGATGACA 59.739 61.111 2.59 0.00 33.68 3.58
1155 1187 1.452108 CATCTTCCCCACGAAGCCC 60.452 63.158 0.00 0.00 46.60 5.19
1163 1195 2.601702 TTCTGCCGCATCTTCCCCA 61.602 57.895 0.00 0.00 0.00 4.96
1347 1379 1.475441 CGATCGCGGTGAAGCTCTTC 61.475 60.000 6.13 2.80 39.91 2.87
1662 1694 0.602638 GCATCACCTTGTCGTGGTCA 60.603 55.000 0.00 0.00 35.28 4.02
1857 1896 1.002868 CTGGCTCTTGACAGTGGGG 60.003 63.158 0.00 0.00 44.15 4.96
1993 2037 1.865865 TCTCGTCACCTGCAAAGAAC 58.134 50.000 0.00 0.00 0.00 3.01
2110 2157 1.003112 TTGTAATTCGGGCGCACCT 60.003 52.632 10.83 0.00 36.97 4.00
2234 2282 4.330074 CACACTCCAATGGACGTCTTTATC 59.670 45.833 16.46 0.00 0.00 1.75
2295 2376 3.278574 TCGCAGCCATTTTTACAGCTAT 58.721 40.909 0.00 0.00 33.33 2.97
2301 2384 6.034577 GGAAGTAAAATCGCAGCCATTTTTAC 59.965 38.462 14.89 16.12 41.49 2.01
2436 2520 9.669353 AAATCAATATCATTAGAACGTCATTGC 57.331 29.630 0.00 0.00 0.00 3.56
2481 2566 5.793457 CGCAAGGGAATACTAAAAAGAAACG 59.207 40.000 0.00 0.00 0.00 3.60
2486 2571 4.095932 GGGACGCAAGGGAATACTAAAAAG 59.904 45.833 0.00 0.00 46.39 2.27
2490 2575 2.474112 AGGGACGCAAGGGAATACTAA 58.526 47.619 0.00 0.00 46.39 2.24
2502 2692 2.669569 GAGCTTGCAAGGGACGCA 60.670 61.111 27.10 0.00 37.68 5.24
2518 2708 2.801679 CGTGTTAGCGGTTGGTAAAAGA 59.198 45.455 0.00 0.00 39.57 2.52
2562 2752 2.226330 TGGTTTTCCATGGTGAACTCG 58.774 47.619 22.93 0.00 46.22 4.18
2581 2774 2.522060 AGCGACGACTGCTTCTTTG 58.478 52.632 0.00 0.00 40.48 2.77
2628 2821 4.521639 GGTAGTACCCCAAAACAAAAGAGG 59.478 45.833 8.27 0.00 30.04 3.69
2682 2877 2.166459 TCTTCTGTCCATACCTTCAGCG 59.834 50.000 0.00 0.00 0.00 5.18
2691 2886 4.403752 CACTGGATGTCTCTTCTGTCCATA 59.596 45.833 0.00 0.00 38.23 2.74
2874 3074 1.949525 ACCTGACATTGTTGACAGTGC 59.050 47.619 6.55 1.64 41.97 4.40
2949 3149 0.180406 AGAGTGCGGAAACAACACCT 59.820 50.000 0.00 0.00 37.68 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.