Multiple sequence alignment - TraesCS3D01G310300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310300 chr3D 100.000 4165 0 0 1 4165 424654312 424650148 0.000000e+00 7692.0
1 TraesCS3D01G310300 chr3A 92.001 3188 182 32 372 3529 564347053 564350197 0.000000e+00 4407.0
2 TraesCS3D01G310300 chr3A 87.143 630 64 9 3538 4162 235365056 235365673 0.000000e+00 699.0
3 TraesCS3D01G310300 chr3A 86.256 633 67 9 3536 4164 81665045 81665661 0.000000e+00 669.0
4 TraesCS3D01G310300 chr3B 93.288 1892 77 22 1367 3230 554647077 554645208 0.000000e+00 2745.0
5 TraesCS3D01G310300 chr3B 87.078 681 55 18 352 1006 554648081 554647408 0.000000e+00 739.0
6 TraesCS3D01G310300 chr3B 90.494 263 11 4 3266 3527 554645207 554644958 6.670000e-88 335.0
7 TraesCS3D01G310300 chr3B 85.714 63 7 2 271 333 128673156 128673216 9.660000e-07 65.8
8 TraesCS3D01G310300 chr7D 89.776 626 45 4 3540 4165 433878572 433877966 0.000000e+00 784.0
9 TraesCS3D01G310300 chr7D 95.714 280 12 0 2 281 307019873 307019594 6.350000e-123 451.0
10 TraesCS3D01G310300 chr6D 86.709 632 67 8 3542 4165 58898319 58898941 0.000000e+00 686.0
11 TraesCS3D01G310300 chr6D 87.086 604 58 11 3566 4165 412489829 412489242 0.000000e+00 665.0
12 TraesCS3D01G310300 chr7B 86.185 637 66 12 3535 4165 1477187 1476567 0.000000e+00 669.0
13 TraesCS3D01G310300 chrUn 86.010 629 71 10 3540 4162 280176907 280176290 0.000000e+00 658.0
14 TraesCS3D01G310300 chrUn 96.786 280 9 0 2 281 432254629 432254908 6.300000e-128 468.0
15 TraesCS3D01G310300 chrUn 96.429 280 10 0 2 281 366017952 366018231 2.930000e-126 462.0
16 TraesCS3D01G310300 chr5D 85.174 634 61 16 3537 4165 404103492 404104097 1.640000e-173 619.0
17 TraesCS3D01G310300 chr1A 88.060 469 48 5 3697 4163 16484524 16484062 2.190000e-152 549.0
18 TraesCS3D01G310300 chr4D 97.143 280 8 0 2 281 123380311 123380032 1.360000e-129 473.0
19 TraesCS3D01G310300 chr4D 96.071 280 11 0 2 281 123591096 123590817 1.360000e-124 457.0
20 TraesCS3D01G310300 chr6B 96.071 280 11 0 2 281 388380341 388380620 1.360000e-124 457.0
21 TraesCS3D01G310300 chr6B 95.357 280 13 0 2 281 626860260 626859981 2.950000e-121 446.0
22 TraesCS3D01G310300 chr2B 96.071 280 11 0 2 281 357587041 357586762 1.360000e-124 457.0
23 TraesCS3D01G310300 chr2D 95.714 280 11 1 2 281 635049741 635049463 2.280000e-122 449.0
24 TraesCS3D01G310300 chr2D 88.561 271 23 6 3540 3807 538756821 538756556 5.190000e-84 322.0
25 TraesCS3D01G310300 chr1D 83.529 255 33 8 2782 3030 419469710 419469961 3.240000e-56 230.0
26 TraesCS3D01G310300 chr1D 100.000 29 0 0 306 334 199456102 199456074 2.000000e-03 54.7
27 TraesCS3D01G310300 chr1B 81.176 255 39 9 2782 3030 566608173 566608424 3.280000e-46 196.0
28 TraesCS3D01G310300 chr7A 87.500 72 9 0 281 352 83705949 83706020 2.670000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310300 chr3D 424650148 424654312 4164 True 7692 7692 100.000000 1 4165 1 chr3D.!!$R1 4164
1 TraesCS3D01G310300 chr3A 564347053 564350197 3144 False 4407 4407 92.001000 372 3529 1 chr3A.!!$F3 3157
2 TraesCS3D01G310300 chr3A 235365056 235365673 617 False 699 699 87.143000 3538 4162 1 chr3A.!!$F2 624
3 TraesCS3D01G310300 chr3A 81665045 81665661 616 False 669 669 86.256000 3536 4164 1 chr3A.!!$F1 628
4 TraesCS3D01G310300 chr3B 554644958 554648081 3123 True 1273 2745 90.286667 352 3527 3 chr3B.!!$R1 3175
5 TraesCS3D01G310300 chr7D 433877966 433878572 606 True 784 784 89.776000 3540 4165 1 chr7D.!!$R2 625
6 TraesCS3D01G310300 chr6D 58898319 58898941 622 False 686 686 86.709000 3542 4165 1 chr6D.!!$F1 623
7 TraesCS3D01G310300 chr6D 412489242 412489829 587 True 665 665 87.086000 3566 4165 1 chr6D.!!$R1 599
8 TraesCS3D01G310300 chr7B 1476567 1477187 620 True 669 669 86.185000 3535 4165 1 chr7B.!!$R1 630
9 TraesCS3D01G310300 chrUn 280176290 280176907 617 True 658 658 86.010000 3540 4162 1 chrUn.!!$R1 622
10 TraesCS3D01G310300 chr5D 404103492 404104097 605 False 619 619 85.174000 3537 4165 1 chr5D.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.036732 AGGAAACAGATGGCGCTTGA 59.963 50.0 7.64 0.00 0.00 3.02 F
397 398 0.388520 CATGTTGTCCGAGCGAGTGA 60.389 55.0 0.00 0.00 0.00 3.41 F
1445 1569 0.039437 CACAGAGCCTTGCAAGCTTG 60.039 55.0 22.44 22.44 41.75 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1243 0.249322 ACCGCGGTATTCTGAATCGG 60.249 55.0 33.34 20.28 40.98 4.18 R
1584 1708 0.608856 AGGGTTGCAATGCGTGATGA 60.609 50.0 0.59 0.00 0.00 2.92 R
3295 3454 0.035176 GTAACACACCCAACCGGCTA 59.965 55.0 0.00 0.00 33.26 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.011095 ACTTCCTACCTTTCTTTATTTAAGTGC 57.989 33.333 0.00 0.00 35.28 4.40
27 28 9.232473 CTTCCTACCTTTCTTTATTTAAGTGCT 57.768 33.333 0.00 0.00 35.28 4.40
29 30 9.886132 TCCTACCTTTCTTTATTTAAGTGCTAG 57.114 33.333 0.00 0.00 35.28 3.42
30 31 9.668497 CCTACCTTTCTTTATTTAAGTGCTAGT 57.332 33.333 0.00 0.00 35.28 2.57
32 33 8.919777 ACCTTTCTTTATTTAAGTGCTAGTGT 57.080 30.769 0.00 0.00 35.28 3.55
33 34 9.000486 ACCTTTCTTTATTTAAGTGCTAGTGTC 58.000 33.333 0.00 0.00 35.28 3.67
34 35 8.999431 CCTTTCTTTATTTAAGTGCTAGTGTCA 58.001 33.333 0.00 0.00 35.28 3.58
41 42 9.719355 TTATTTAAGTGCTAGTGTCAAATGAGA 57.281 29.630 0.00 0.00 0.00 3.27
42 43 7.421530 TTTAAGTGCTAGTGTCAAATGAGAC 57.578 36.000 2.68 2.68 38.47 3.36
43 44 4.607293 AGTGCTAGTGTCAAATGAGACA 57.393 40.909 12.51 0.00 45.64 3.41
50 51 2.229792 TGTCAAATGAGACAGTTGCCC 58.770 47.619 6.99 2.19 43.18 5.36
51 52 2.229792 GTCAAATGAGACAGTTGCCCA 58.770 47.619 6.99 0.00 38.97 5.36
52 53 2.030805 GTCAAATGAGACAGTTGCCCAC 60.031 50.000 6.99 0.00 38.97 4.61
53 54 1.270550 CAAATGAGACAGTTGCCCACC 59.729 52.381 0.00 0.00 32.96 4.61
54 55 0.773644 AATGAGACAGTTGCCCACCT 59.226 50.000 0.00 0.00 0.00 4.00
55 56 0.773644 ATGAGACAGTTGCCCACCTT 59.226 50.000 0.00 0.00 0.00 3.50
56 57 0.179020 TGAGACAGTTGCCCACCTTG 60.179 55.000 0.00 0.00 0.00 3.61
57 58 0.890996 GAGACAGTTGCCCACCTTGG 60.891 60.000 0.00 0.00 37.25 3.61
58 59 1.150536 GACAGTTGCCCACCTTGGA 59.849 57.895 0.00 0.00 40.96 3.53
59 60 0.890996 GACAGTTGCCCACCTTGGAG 60.891 60.000 0.00 0.00 40.96 3.86
60 61 1.604593 CAGTTGCCCACCTTGGAGG 60.605 63.158 0.00 0.00 40.96 4.30
62 63 3.589542 TTGCCCACCTTGGAGGGG 61.590 66.667 20.95 17.25 45.58 4.79
63 64 4.938756 TGCCCACCTTGGAGGGGT 62.939 66.667 20.95 0.00 45.58 4.95
64 65 3.590574 GCCCACCTTGGAGGGGTT 61.591 66.667 20.95 0.00 45.58 4.11
65 66 2.440599 CCCACCTTGGAGGGGTTG 59.559 66.667 13.48 0.00 40.96 3.77
66 67 2.469765 CCCACCTTGGAGGGGTTGT 61.470 63.158 13.48 0.00 40.96 3.32
67 68 1.137594 CCCACCTTGGAGGGGTTGTA 61.138 60.000 13.48 0.00 40.96 2.41
68 69 0.328258 CCACCTTGGAGGGGTTGTAG 59.672 60.000 0.00 0.00 40.96 2.74
69 70 0.322546 CACCTTGGAGGGGTTGTAGC 60.323 60.000 0.00 0.00 40.58 3.58
70 71 1.078426 CCTTGGAGGGGTTGTAGCG 60.078 63.158 0.00 0.00 0.00 4.26
71 72 1.550130 CCTTGGAGGGGTTGTAGCGA 61.550 60.000 0.00 0.00 0.00 4.93
72 73 0.323629 CTTGGAGGGGTTGTAGCGAA 59.676 55.000 0.00 0.00 0.00 4.70
73 74 0.766131 TTGGAGGGGTTGTAGCGAAA 59.234 50.000 0.00 0.00 0.00 3.46
74 75 0.323629 TGGAGGGGTTGTAGCGAAAG 59.676 55.000 0.00 0.00 0.00 2.62
86 87 4.988065 CGAAAGCTCCGAAGTCCA 57.012 55.556 2.68 0.00 0.00 4.02
87 88 2.446341 CGAAAGCTCCGAAGTCCAC 58.554 57.895 2.68 0.00 0.00 4.02
88 89 0.038159 CGAAAGCTCCGAAGTCCACT 60.038 55.000 2.68 0.00 0.00 4.00
89 90 1.605712 CGAAAGCTCCGAAGTCCACTT 60.606 52.381 2.68 0.00 39.23 3.16
90 91 2.070028 GAAAGCTCCGAAGTCCACTTC 58.930 52.381 9.12 9.12 46.63 3.01
102 103 6.061231 GAAGTCCACTTCTTTACCAACTTG 57.939 41.667 11.55 0.00 46.59 3.16
103 104 5.367945 AGTCCACTTCTTTACCAACTTGA 57.632 39.130 0.00 0.00 0.00 3.02
104 105 5.751586 AGTCCACTTCTTTACCAACTTGAA 58.248 37.500 0.00 0.00 0.00 2.69
105 106 6.365520 AGTCCACTTCTTTACCAACTTGAAT 58.634 36.000 0.00 0.00 0.00 2.57
106 107 6.833933 AGTCCACTTCTTTACCAACTTGAATT 59.166 34.615 0.00 0.00 0.00 2.17
107 108 7.013369 AGTCCACTTCTTTACCAACTTGAATTC 59.987 37.037 0.00 0.00 0.00 2.17
108 109 6.831353 TCCACTTCTTTACCAACTTGAATTCA 59.169 34.615 3.38 3.38 0.00 2.57
109 110 7.505585 TCCACTTCTTTACCAACTTGAATTCAT 59.494 33.333 9.40 0.00 0.00 2.57
110 111 8.792633 CCACTTCTTTACCAACTTGAATTCATA 58.207 33.333 9.40 0.00 0.00 2.15
113 114 9.846248 CTTCTTTACCAACTTGAATTCATAAGG 57.154 33.333 9.40 11.36 0.00 2.69
114 115 9.581289 TTCTTTACCAACTTGAATTCATAAGGA 57.419 29.630 9.40 6.92 0.00 3.36
115 116 9.231297 TCTTTACCAACTTGAATTCATAAGGAG 57.769 33.333 9.40 5.76 0.00 3.69
116 117 9.231297 CTTTACCAACTTGAATTCATAAGGAGA 57.769 33.333 9.40 1.58 0.00 3.71
117 118 8.561738 TTACCAACTTGAATTCATAAGGAGAC 57.438 34.615 9.40 0.00 0.00 3.36
118 119 5.946377 ACCAACTTGAATTCATAAGGAGACC 59.054 40.000 9.40 0.00 0.00 3.85
119 120 5.065218 CCAACTTGAATTCATAAGGAGACCG 59.935 44.000 9.40 0.00 0.00 4.79
120 121 5.677319 ACTTGAATTCATAAGGAGACCGA 57.323 39.130 9.40 0.00 0.00 4.69
121 122 6.049955 ACTTGAATTCATAAGGAGACCGAA 57.950 37.500 9.40 0.00 0.00 4.30
122 123 5.875359 ACTTGAATTCATAAGGAGACCGAAC 59.125 40.000 9.40 0.00 0.00 3.95
123 124 5.677319 TGAATTCATAAGGAGACCGAACT 57.323 39.130 3.38 0.00 0.00 3.01
124 125 5.661458 TGAATTCATAAGGAGACCGAACTC 58.339 41.667 3.38 0.00 36.31 3.01
125 126 5.186992 TGAATTCATAAGGAGACCGAACTCA 59.813 40.000 3.38 0.00 38.51 3.41
126 127 5.677319 ATTCATAAGGAGACCGAACTCAA 57.323 39.130 10.06 0.00 38.51 3.02
127 128 5.677319 TTCATAAGGAGACCGAACTCAAT 57.323 39.130 10.06 2.54 38.51 2.57
128 129 5.677319 TCATAAGGAGACCGAACTCAATT 57.323 39.130 10.06 7.18 38.51 2.32
129 130 5.661458 TCATAAGGAGACCGAACTCAATTC 58.339 41.667 10.06 0.00 38.51 2.17
130 131 5.186992 TCATAAGGAGACCGAACTCAATTCA 59.813 40.000 10.06 0.00 37.12 2.57
131 132 4.559862 AAGGAGACCGAACTCAATTCAT 57.440 40.909 10.06 0.00 37.12 2.57
132 133 3.866651 AGGAGACCGAACTCAATTCATG 58.133 45.455 10.06 0.00 37.12 3.07
133 134 2.352960 GGAGACCGAACTCAATTCATGC 59.647 50.000 10.06 0.00 37.12 4.06
134 135 3.265791 GAGACCGAACTCAATTCATGCT 58.734 45.455 0.00 0.00 37.12 3.79
135 136 3.265791 AGACCGAACTCAATTCATGCTC 58.734 45.455 0.00 0.00 37.12 4.26
136 137 3.002791 GACCGAACTCAATTCATGCTCA 58.997 45.455 0.00 0.00 37.12 4.26
137 138 3.411446 ACCGAACTCAATTCATGCTCAA 58.589 40.909 0.00 0.00 37.12 3.02
138 139 3.438087 ACCGAACTCAATTCATGCTCAAG 59.562 43.478 0.00 0.00 37.12 3.02
139 140 3.438087 CCGAACTCAATTCATGCTCAAGT 59.562 43.478 0.00 0.00 37.12 3.16
140 141 4.400845 CGAACTCAATTCATGCTCAAGTG 58.599 43.478 0.00 0.00 37.12 3.16
141 142 4.152938 CGAACTCAATTCATGCTCAAGTGA 59.847 41.667 0.00 0.00 37.12 3.41
142 143 5.334337 CGAACTCAATTCATGCTCAAGTGAA 60.334 40.000 0.00 0.00 37.12 3.18
143 144 5.368256 ACTCAATTCATGCTCAAGTGAAC 57.632 39.130 0.00 0.00 37.19 3.18
144 145 4.217118 ACTCAATTCATGCTCAAGTGAACC 59.783 41.667 0.00 0.00 37.19 3.62
145 146 4.143543 TCAATTCATGCTCAAGTGAACCA 58.856 39.130 0.00 0.00 37.19 3.67
146 147 4.022935 TCAATTCATGCTCAAGTGAACCAC 60.023 41.667 0.00 0.00 37.19 4.16
147 148 1.511850 TCATGCTCAAGTGAACCACG 58.488 50.000 0.00 0.00 39.64 4.94
148 149 0.518636 CATGCTCAAGTGAACCACGG 59.481 55.000 0.00 0.00 39.64 4.94
149 150 0.606401 ATGCTCAAGTGAACCACGGG 60.606 55.000 0.00 0.00 39.64 5.28
150 151 1.227853 GCTCAAGTGAACCACGGGT 60.228 57.895 0.00 0.00 39.64 5.28
151 152 1.507141 GCTCAAGTGAACCACGGGTG 61.507 60.000 0.00 0.00 39.64 4.61
152 153 0.105964 CTCAAGTGAACCACGGGTGA 59.894 55.000 0.00 0.00 39.64 4.02
153 154 0.762418 TCAAGTGAACCACGGGTGAT 59.238 50.000 0.00 0.00 39.64 3.06
154 155 0.874390 CAAGTGAACCACGGGTGATG 59.126 55.000 0.00 0.00 39.64 3.07
155 156 0.762418 AAGTGAACCACGGGTGATGA 59.238 50.000 0.00 0.00 39.64 2.92
156 157 0.984230 AGTGAACCACGGGTGATGAT 59.016 50.000 0.00 0.00 39.64 2.45
157 158 2.184533 AGTGAACCACGGGTGATGATA 58.815 47.619 0.00 0.00 39.64 2.15
158 159 2.771943 AGTGAACCACGGGTGATGATAT 59.228 45.455 0.00 0.00 39.64 1.63
159 160 3.199946 AGTGAACCACGGGTGATGATATT 59.800 43.478 0.00 0.00 39.64 1.28
160 161 3.560068 GTGAACCACGGGTGATGATATTC 59.440 47.826 0.00 0.00 35.34 1.75
161 162 2.930826 ACCACGGGTGATGATATTCC 57.069 50.000 0.00 0.00 32.98 3.01
162 163 1.070134 ACCACGGGTGATGATATTCCG 59.930 52.381 0.00 0.00 45.42 4.30
163 164 1.148310 CACGGGTGATGATATTCCGC 58.852 55.000 0.00 0.00 43.96 5.54
164 165 1.048601 ACGGGTGATGATATTCCGCT 58.951 50.000 0.00 0.00 43.96 5.52
165 166 1.270305 ACGGGTGATGATATTCCGCTG 60.270 52.381 0.00 0.00 43.96 5.18
166 167 1.270305 CGGGTGATGATATTCCGCTGT 60.270 52.381 0.00 0.00 34.17 4.40
167 168 2.806745 CGGGTGATGATATTCCGCTGTT 60.807 50.000 0.00 0.00 34.17 3.16
168 169 3.214328 GGGTGATGATATTCCGCTGTTT 58.786 45.455 0.00 0.00 0.00 2.83
169 170 3.632145 GGGTGATGATATTCCGCTGTTTT 59.368 43.478 0.00 0.00 0.00 2.43
170 171 4.498009 GGGTGATGATATTCCGCTGTTTTG 60.498 45.833 0.00 0.00 0.00 2.44
171 172 4.335315 GGTGATGATATTCCGCTGTTTTGA 59.665 41.667 0.00 0.00 0.00 2.69
172 173 5.163663 GGTGATGATATTCCGCTGTTTTGAA 60.164 40.000 0.00 0.00 0.00 2.69
173 174 6.321717 GTGATGATATTCCGCTGTTTTGAAA 58.678 36.000 0.00 0.00 0.00 2.69
174 175 6.974622 GTGATGATATTCCGCTGTTTTGAAAT 59.025 34.615 0.00 0.00 0.00 2.17
175 176 7.166473 GTGATGATATTCCGCTGTTTTGAAATC 59.834 37.037 0.00 0.00 0.00 2.17
176 177 6.507958 TGATATTCCGCTGTTTTGAAATCA 57.492 33.333 0.00 0.00 0.00 2.57
177 178 6.918626 TGATATTCCGCTGTTTTGAAATCAA 58.081 32.000 0.00 0.00 0.00 2.57
178 179 7.374272 TGATATTCCGCTGTTTTGAAATCAAA 58.626 30.769 4.52 4.52 43.36 2.69
179 180 8.034215 TGATATTCCGCTGTTTTGAAATCAAAT 58.966 29.630 9.23 0.00 44.30 2.32
180 181 9.515020 GATATTCCGCTGTTTTGAAATCAAATA 57.485 29.630 9.23 2.26 44.30 1.40
181 182 7.816945 ATTCCGCTGTTTTGAAATCAAATAG 57.183 32.000 9.23 11.25 44.30 1.73
182 183 5.708948 TCCGCTGTTTTGAAATCAAATAGG 58.291 37.500 9.23 8.60 44.30 2.57
183 184 5.475220 TCCGCTGTTTTGAAATCAAATAGGA 59.525 36.000 9.23 10.33 44.30 2.94
184 185 6.015856 TCCGCTGTTTTGAAATCAAATAGGAA 60.016 34.615 9.23 0.00 44.30 3.36
185 186 6.644592 CCGCTGTTTTGAAATCAAATAGGAAA 59.355 34.615 9.23 0.00 44.30 3.13
186 187 7.359181 CCGCTGTTTTGAAATCAAATAGGAAAC 60.359 37.037 9.23 4.72 44.30 2.78
187 188 7.168972 CGCTGTTTTGAAATCAAATAGGAAACA 59.831 33.333 9.23 8.49 44.30 2.83
188 189 8.490355 GCTGTTTTGAAATCAAATAGGAAACAG 58.510 33.333 20.95 20.95 44.30 3.16
189 190 9.748708 CTGTTTTGAAATCAAATAGGAAACAGA 57.251 29.630 20.80 1.93 43.14 3.41
192 193 9.709495 TTTTGAAATCAAATAGGAAACAGATGG 57.291 29.630 9.23 0.00 44.30 3.51
193 194 6.866480 TGAAATCAAATAGGAAACAGATGGC 58.134 36.000 0.00 0.00 0.00 4.40
194 195 5.505173 AATCAAATAGGAAACAGATGGCG 57.495 39.130 0.00 0.00 0.00 5.69
195 196 2.682856 TCAAATAGGAAACAGATGGCGC 59.317 45.455 0.00 0.00 0.00 6.53
196 197 2.684881 CAAATAGGAAACAGATGGCGCT 59.315 45.455 7.64 0.00 0.00 5.92
197 198 2.717639 ATAGGAAACAGATGGCGCTT 57.282 45.000 7.64 0.00 0.00 4.68
198 199 1.737838 TAGGAAACAGATGGCGCTTG 58.262 50.000 7.64 3.71 0.00 4.01
199 200 0.036732 AGGAAACAGATGGCGCTTGA 59.963 50.000 7.64 0.00 0.00 3.02
200 201 0.449388 GGAAACAGATGGCGCTTGAG 59.551 55.000 7.64 0.00 0.00 3.02
201 202 1.160137 GAAACAGATGGCGCTTGAGT 58.840 50.000 7.64 0.00 0.00 3.41
202 203 1.537202 GAAACAGATGGCGCTTGAGTT 59.463 47.619 7.64 3.60 0.00 3.01
203 204 1.609208 AACAGATGGCGCTTGAGTTT 58.391 45.000 7.64 0.00 0.00 2.66
204 205 1.609208 ACAGATGGCGCTTGAGTTTT 58.391 45.000 7.64 0.00 0.00 2.43
205 206 1.956477 ACAGATGGCGCTTGAGTTTTT 59.044 42.857 7.64 0.00 0.00 1.94
228 229 7.807977 TTTATCTTGGCATGAGAAACTATCC 57.192 36.000 16.32 0.00 0.00 2.59
229 230 4.156455 TCTTGGCATGAGAAACTATCCC 57.844 45.455 0.00 0.00 0.00 3.85
230 231 3.117888 TCTTGGCATGAGAAACTATCCCC 60.118 47.826 0.00 0.00 0.00 4.81
231 232 1.494721 TGGCATGAGAAACTATCCCCC 59.505 52.381 0.00 0.00 0.00 5.40
247 248 2.302587 CCCCCTCCTTTTGCTTACAA 57.697 50.000 0.00 0.00 0.00 2.41
248 249 2.820178 CCCCCTCCTTTTGCTTACAAT 58.180 47.619 0.00 0.00 35.21 2.71
249 250 2.760650 CCCCCTCCTTTTGCTTACAATC 59.239 50.000 0.00 0.00 35.21 2.67
250 251 3.430453 CCCCTCCTTTTGCTTACAATCA 58.570 45.455 0.00 0.00 35.21 2.57
251 252 4.026052 CCCCTCCTTTTGCTTACAATCAT 58.974 43.478 0.00 0.00 35.21 2.45
252 253 4.098501 CCCCTCCTTTTGCTTACAATCATC 59.901 45.833 0.00 0.00 35.21 2.92
253 254 4.952335 CCCTCCTTTTGCTTACAATCATCT 59.048 41.667 0.00 0.00 35.21 2.90
254 255 5.067023 CCCTCCTTTTGCTTACAATCATCTC 59.933 44.000 0.00 0.00 35.21 2.75
255 256 5.649395 CCTCCTTTTGCTTACAATCATCTCA 59.351 40.000 0.00 0.00 35.21 3.27
256 257 6.404074 CCTCCTTTTGCTTACAATCATCTCAC 60.404 42.308 0.00 0.00 35.21 3.51
257 258 6.240894 TCCTTTTGCTTACAATCATCTCACT 58.759 36.000 0.00 0.00 35.21 3.41
258 259 6.716628 TCCTTTTGCTTACAATCATCTCACTT 59.283 34.615 0.00 0.00 35.21 3.16
259 260 7.025963 CCTTTTGCTTACAATCATCTCACTTC 58.974 38.462 0.00 0.00 35.21 3.01
260 261 6.500684 TTTGCTTACAATCATCTCACTTCC 57.499 37.500 0.00 0.00 35.21 3.46
261 262 4.517285 TGCTTACAATCATCTCACTTCCC 58.483 43.478 0.00 0.00 0.00 3.97
262 263 4.225942 TGCTTACAATCATCTCACTTCCCT 59.774 41.667 0.00 0.00 0.00 4.20
263 264 5.189180 GCTTACAATCATCTCACTTCCCTT 58.811 41.667 0.00 0.00 0.00 3.95
264 265 5.065731 GCTTACAATCATCTCACTTCCCTTG 59.934 44.000 0.00 0.00 0.00 3.61
265 266 4.647564 ACAATCATCTCACTTCCCTTGT 57.352 40.909 0.00 0.00 0.00 3.16
266 267 5.762179 ACAATCATCTCACTTCCCTTGTA 57.238 39.130 0.00 0.00 0.00 2.41
267 268 6.126863 ACAATCATCTCACTTCCCTTGTAA 57.873 37.500 0.00 0.00 0.00 2.41
268 269 6.176183 ACAATCATCTCACTTCCCTTGTAAG 58.824 40.000 0.00 0.00 0.00 2.34
269 270 6.013379 ACAATCATCTCACTTCCCTTGTAAGA 60.013 38.462 0.00 0.00 0.00 2.10
270 271 6.627087 ATCATCTCACTTCCCTTGTAAGAA 57.373 37.500 0.00 0.00 0.00 2.52
271 272 6.042638 TCATCTCACTTCCCTTGTAAGAAG 57.957 41.667 0.00 0.00 44.14 2.85
272 273 5.780282 TCATCTCACTTCCCTTGTAAGAAGA 59.220 40.000 6.75 0.00 41.69 2.87
273 274 6.441924 TCATCTCACTTCCCTTGTAAGAAGAT 59.558 38.462 6.75 0.00 41.69 2.40
274 275 7.619698 TCATCTCACTTCCCTTGTAAGAAGATA 59.380 37.037 6.75 0.00 41.69 1.98
275 276 7.792364 TCTCACTTCCCTTGTAAGAAGATAA 57.208 36.000 6.75 0.00 41.69 1.75
276 277 8.380742 TCTCACTTCCCTTGTAAGAAGATAAT 57.619 34.615 6.75 0.00 41.69 1.28
277 278 9.488762 TCTCACTTCCCTTGTAAGAAGATAATA 57.511 33.333 6.75 0.00 41.69 0.98
278 279 9.757227 CTCACTTCCCTTGTAAGAAGATAATAG 57.243 37.037 6.75 0.00 41.69 1.73
279 280 9.268282 TCACTTCCCTTGTAAGAAGATAATAGT 57.732 33.333 6.75 0.00 41.69 2.12
280 281 9.319143 CACTTCCCTTGTAAGAAGATAATAGTG 57.681 37.037 6.75 0.00 41.69 2.74
281 282 9.047947 ACTTCCCTTGTAAGAAGATAATAGTGT 57.952 33.333 6.75 0.00 41.69 3.55
295 296 9.664332 AAGATAATAGTGTATTGCTCATCATCC 57.336 33.333 0.00 0.00 0.00 3.51
296 297 8.263640 AGATAATAGTGTATTGCTCATCATCCC 58.736 37.037 0.00 0.00 0.00 3.85
297 298 3.117491 AGTGTATTGCTCATCATCCCG 57.883 47.619 0.00 0.00 0.00 5.14
298 299 2.435805 AGTGTATTGCTCATCATCCCGT 59.564 45.455 0.00 0.00 0.00 5.28
299 300 2.545526 GTGTATTGCTCATCATCCCGTG 59.454 50.000 0.00 0.00 0.00 4.94
300 301 2.170397 TGTATTGCTCATCATCCCGTGT 59.830 45.455 0.00 0.00 0.00 4.49
301 302 3.386402 TGTATTGCTCATCATCCCGTGTA 59.614 43.478 0.00 0.00 0.00 2.90
302 303 3.777106 ATTGCTCATCATCCCGTGTAT 57.223 42.857 0.00 0.00 0.00 2.29
303 304 2.820059 TGCTCATCATCCCGTGTATC 57.180 50.000 0.00 0.00 0.00 2.24
304 305 2.319844 TGCTCATCATCCCGTGTATCT 58.680 47.619 0.00 0.00 0.00 1.98
305 306 2.036346 TGCTCATCATCCCGTGTATCTG 59.964 50.000 0.00 0.00 0.00 2.90
306 307 2.681706 CTCATCATCCCGTGTATCTGC 58.318 52.381 0.00 0.00 0.00 4.26
307 308 2.298446 CTCATCATCCCGTGTATCTGCT 59.702 50.000 0.00 0.00 0.00 4.24
308 309 2.700371 TCATCATCCCGTGTATCTGCTT 59.300 45.455 0.00 0.00 0.00 3.91
309 310 2.602257 TCATCCCGTGTATCTGCTTG 57.398 50.000 0.00 0.00 0.00 4.01
310 311 2.107366 TCATCCCGTGTATCTGCTTGA 58.893 47.619 0.00 0.00 0.00 3.02
311 312 2.700371 TCATCCCGTGTATCTGCTTGAT 59.300 45.455 0.00 0.00 39.11 2.57
312 313 2.602257 TCCCGTGTATCTGCTTGATG 57.398 50.000 3.60 0.00 36.65 3.07
313 314 0.940126 CCCGTGTATCTGCTTGATGC 59.060 55.000 3.60 3.06 43.25 3.91
314 315 1.473965 CCCGTGTATCTGCTTGATGCT 60.474 52.381 8.96 0.00 43.37 3.79
315 316 2.224042 CCCGTGTATCTGCTTGATGCTA 60.224 50.000 8.96 0.00 43.37 3.49
316 317 3.555795 CCCGTGTATCTGCTTGATGCTAT 60.556 47.826 8.96 0.00 43.37 2.97
317 318 4.321974 CCCGTGTATCTGCTTGATGCTATA 60.322 45.833 8.96 0.00 43.37 1.31
318 319 5.414360 CCGTGTATCTGCTTGATGCTATAT 58.586 41.667 8.96 0.00 43.37 0.86
319 320 5.871524 CCGTGTATCTGCTTGATGCTATATT 59.128 40.000 8.96 0.00 43.37 1.28
320 321 6.369890 CCGTGTATCTGCTTGATGCTATATTT 59.630 38.462 8.96 0.00 43.37 1.40
321 322 7.095060 CCGTGTATCTGCTTGATGCTATATTTT 60.095 37.037 8.96 0.00 43.37 1.82
322 323 8.925700 CGTGTATCTGCTTGATGCTATATTTTA 58.074 33.333 8.96 0.00 43.37 1.52
392 393 2.390599 CCACCATGTTGTCCGAGCG 61.391 63.158 0.00 0.00 0.00 5.03
397 398 0.388520 CATGTTGTCCGAGCGAGTGA 60.389 55.000 0.00 0.00 0.00 3.41
398 399 0.532573 ATGTTGTCCGAGCGAGTGAT 59.467 50.000 0.00 0.00 0.00 3.06
406 407 0.454452 CGAGCGAGTGATGTTGTCGA 60.454 55.000 0.00 0.00 35.70 4.20
410 411 1.405461 CGAGTGATGTTGTCGAACGT 58.595 50.000 0.00 0.00 35.70 3.99
412 413 2.662700 GAGTGATGTTGTCGAACGTCT 58.337 47.619 10.09 0.00 45.11 4.18
417 418 2.502213 TGTTGTCGAACGTCTGACAT 57.498 45.000 19.58 0.00 43.99 3.06
422 423 2.551032 TGTCGAACGTCTGACATGTAGT 59.449 45.455 16.23 0.00 40.02 2.73
457 459 4.591498 TTTTCTCTAAAAAGGGGAAAGCCC 59.409 41.667 0.00 0.00 41.47 5.19
472 474 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
478 480 2.459442 GCCTCTGCATCAGCGTGAC 61.459 63.158 0.00 0.00 46.23 3.67
497 499 2.184322 CACGCCACCGAGCATAGT 59.816 61.111 0.00 0.00 38.29 2.12
498 500 2.167219 CACGCCACCGAGCATAGTG 61.167 63.158 0.00 0.00 38.29 2.74
501 503 2.586079 CCACCGAGCATAGTGGCG 60.586 66.667 6.17 0.00 46.55 5.69
529 542 1.197721 AGAAAGCGGCGAAACATTCTG 59.802 47.619 12.98 0.00 0.00 3.02
655 668 1.532090 CCTTTCGTCTCCTCGTGATCG 60.532 57.143 0.00 0.00 38.55 3.69
671 684 7.764443 CCTCGTGATCGGAATAATATTGGTAAT 59.236 37.037 0.00 0.00 37.69 1.89
847 887 3.196463 GACATCCTCTGCATCAGTCTTG 58.804 50.000 0.00 0.00 32.61 3.02
1073 1186 3.520569 CACTTGTGTTTGGTTGGAAAGG 58.479 45.455 0.00 0.00 0.00 3.11
1083 1206 2.696187 TGGTTGGAAAGGCAAAACTACC 59.304 45.455 0.00 0.00 0.00 3.18
1088 1211 4.794334 TGGAAAGGCAAAACTACCAAGTA 58.206 39.130 0.00 0.00 33.75 2.24
1120 1243 1.200948 GCTTGTGTTCTTCAGGGATGC 59.799 52.381 0.00 0.00 0.00 3.91
1197 1321 4.211374 GGCATGTTAACTAGGTAGCATTCG 59.789 45.833 13.91 6.09 0.00 3.34
1203 1327 2.231529 ACTAGGTAGCATTCGATCGCT 58.768 47.619 11.09 13.01 42.34 4.93
1207 1331 1.523095 GGTAGCATTCGATCGCTTCAC 59.477 52.381 11.09 7.48 39.70 3.18
1208 1332 2.464865 GTAGCATTCGATCGCTTCACT 58.535 47.619 11.09 6.49 39.70 3.41
1230 1354 7.773224 TCACTAAGATTTGAACAGTTTCCTTGA 59.227 33.333 0.00 0.00 0.00 3.02
1405 1529 2.663826 TTGTGTGTTTTGGACAAGCC 57.336 45.000 0.00 0.00 40.65 4.35
1420 1544 4.022242 GGACAAGCCCTTTCTTACTTTTCC 60.022 45.833 0.00 0.00 33.29 3.13
1445 1569 0.039437 CACAGAGCCTTGCAAGCTTG 60.039 55.000 22.44 22.44 41.75 4.01
1561 1685 2.733956 TGCTGGGTATGAAATGGTTCC 58.266 47.619 0.00 0.00 32.28 3.62
1607 1731 2.034879 ACGCATTGCAACCCTCTCG 61.035 57.895 0.00 1.83 0.00 4.04
1616 1740 1.512926 CAACCCTCTCGAACAAGGTG 58.487 55.000 7.24 2.74 0.00 4.00
1970 2103 3.339253 GGCTAGACCGGAAAAGGTAAA 57.661 47.619 9.46 0.00 46.09 2.01
1982 2115 5.918576 CGGAAAAGGTAAACACAATTTCCTC 59.081 40.000 11.87 0.00 42.17 3.71
2016 2156 2.941720 GAGCATGGATGAGTTTCAGACC 59.058 50.000 0.00 0.00 0.00 3.85
2038 2180 5.659079 ACCTTTGTGAAATGGGAACTTTGTA 59.341 36.000 0.00 0.00 0.00 2.41
2348 2490 2.570181 GACATGCTTGCACTGCCC 59.430 61.111 8.21 0.00 0.00 5.36
2411 2553 4.963373 TCGAGGAAATTCACTGTTTGGTA 58.037 39.130 0.00 0.00 0.00 3.25
2412 2554 5.556915 TCGAGGAAATTCACTGTTTGGTAT 58.443 37.500 0.00 0.00 0.00 2.73
2413 2555 6.001460 TCGAGGAAATTCACTGTTTGGTATT 58.999 36.000 0.00 0.00 0.00 1.89
2414 2556 7.162761 TCGAGGAAATTCACTGTTTGGTATTA 58.837 34.615 0.00 0.00 0.00 0.98
2415 2557 7.118680 TCGAGGAAATTCACTGTTTGGTATTAC 59.881 37.037 0.00 0.00 0.00 1.89
2416 2558 7.119262 CGAGGAAATTCACTGTTTGGTATTACT 59.881 37.037 0.00 0.00 0.00 2.24
2417 2559 9.444600 GAGGAAATTCACTGTTTGGTATTACTA 57.555 33.333 0.00 0.00 0.00 1.82
2418 2560 9.227777 AGGAAATTCACTGTTTGGTATTACTAC 57.772 33.333 0.00 0.00 0.00 2.73
2427 2569 7.673082 ACTGTTTGGTATTACTACTACTGAGGT 59.327 37.037 0.00 0.00 0.00 3.85
2459 2601 3.198635 TCTGAGATTGTGGAGGGTTCATC 59.801 47.826 0.00 0.00 0.00 2.92
2471 2613 2.092323 GGGTTCATCTTGCAGGTTACC 58.908 52.381 0.00 0.00 0.00 2.85
2597 2739 2.351835 CGTGACCAGAGACGACTTCATT 60.352 50.000 0.00 0.00 37.81 2.57
2696 2838 1.670406 CAGGGTGAGCACAGCAGAC 60.670 63.158 15.17 0.00 45.04 3.51
2704 2846 2.033755 GCACAGCAGACCAGAGCAG 61.034 63.158 0.00 0.00 0.00 4.24
2708 2850 2.125188 GCAGACCAGAGCAGAGCC 60.125 66.667 0.00 0.00 0.00 4.70
2739 2898 3.242870 CCATCTCTTTTGCAGATTACGCC 60.243 47.826 0.00 0.00 0.00 5.68
2762 2921 7.152645 GCCTTGCTAATCATCATTCATTTGAT 58.847 34.615 0.00 0.00 36.79 2.57
2795 2954 1.115467 AGATCAAGCTGGACTACCCG 58.885 55.000 0.00 0.00 37.93 5.28
2840 2999 1.347320 GCTACTACAACACCTGCGTC 58.653 55.000 0.00 0.00 0.00 5.19
3107 3266 1.455849 CAACCCCAAGACTGGCTCA 59.544 57.895 0.00 0.00 41.99 4.26
3212 3371 0.182775 AGGAGAGTGTTTTTGCGGGT 59.817 50.000 0.00 0.00 0.00 5.28
3261 3420 5.464057 CGTGAATGTGTGGTCTTTGTTACTA 59.536 40.000 0.00 0.00 0.00 1.82
3262 3421 6.346598 CGTGAATGTGTGGTCTTTGTTACTAG 60.347 42.308 0.00 0.00 0.00 2.57
3263 3422 6.482308 GTGAATGTGTGGTCTTTGTTACTAGT 59.518 38.462 0.00 0.00 0.00 2.57
3264 3423 6.481976 TGAATGTGTGGTCTTTGTTACTAGTG 59.518 38.462 5.39 0.00 0.00 2.74
3295 3454 5.782331 TCTTGTATGGAAGGCAGAGCTATAT 59.218 40.000 0.00 0.00 0.00 0.86
3353 3513 8.224025 TCAGAGTATCAGAATTCAGAGGACTAT 58.776 37.037 14.45 10.69 37.82 2.12
3405 3565 3.490155 CGAGCATCAAGATCAGATGACAC 59.510 47.826 24.18 15.36 44.34 3.67
3471 3631 2.103263 CCTGGGAGGATAAGTAGTGCAC 59.897 54.545 9.40 9.40 37.67 4.57
3529 3689 7.224557 ACATTTCAAACAATTGCAAAGTACTCC 59.775 33.333 1.71 0.00 36.45 3.85
3530 3690 5.843673 TCAAACAATTGCAAAGTACTCCA 57.156 34.783 1.71 0.00 36.45 3.86
3531 3691 5.587289 TCAAACAATTGCAAAGTACTCCAC 58.413 37.500 1.71 0.00 36.45 4.02
3532 3692 3.896648 ACAATTGCAAAGTACTCCACG 57.103 42.857 1.71 0.00 0.00 4.94
3533 3693 3.472652 ACAATTGCAAAGTACTCCACGA 58.527 40.909 1.71 0.00 0.00 4.35
3851 4046 9.362539 AGATAAAACTACGGTACAACTACATTG 57.637 33.333 0.00 0.00 44.60 2.82
3852 4047 9.357652 GATAAAACTACGGTACAACTACATTGA 57.642 33.333 0.00 0.00 41.23 2.57
3853 4048 9.709495 ATAAAACTACGGTACAACTACATTGAA 57.291 29.630 0.00 0.00 41.23 2.69
3854 4049 8.436046 AAAACTACGGTACAACTACATTGAAA 57.564 30.769 0.00 0.00 41.23 2.69
3860 4055 6.424812 ACGGTACAACTACATTGAAAACTACC 59.575 38.462 0.00 0.00 41.23 3.18
3870 4065 4.799419 TTGAAAACTACCGTGCAACTAC 57.201 40.909 0.00 0.00 31.75 2.73
3878 4075 4.701651 ACTACCGTGCAACTACATACTACA 59.298 41.667 0.00 0.00 31.75 2.74
3958 4155 5.197451 GAGGTATCGATCCATATGTCCTCT 58.803 45.833 0.00 0.00 36.84 3.69
4037 4234 1.754745 GATATCGCCAGGGCCTTCA 59.245 57.895 1.32 0.00 37.98 3.02
4062 4259 4.003788 CCTGTCCAACCGCTCCGT 62.004 66.667 0.00 0.00 0.00 4.69
4085 4282 1.078214 CGCTCTGCCATCCTTTCCA 60.078 57.895 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.011095 GCACTTAAATAAAGAAAGGTAGGAAGT 57.989 33.333 0.00 0.00 38.67 3.01
1 2 9.232473 AGCACTTAAATAAAGAAAGGTAGGAAG 57.768 33.333 0.00 0.00 38.67 3.46
3 4 9.886132 CTAGCACTTAAATAAAGAAAGGTAGGA 57.114 33.333 0.00 0.00 38.67 2.94
4 5 9.668497 ACTAGCACTTAAATAAAGAAAGGTAGG 57.332 33.333 0.00 0.00 38.64 3.18
7 8 8.919777 ACACTAGCACTTAAATAAAGAAAGGT 57.080 30.769 0.00 0.00 38.67 3.50
8 9 8.999431 TGACACTAGCACTTAAATAAAGAAAGG 58.001 33.333 0.00 0.00 38.67 3.11
15 16 9.719355 TCTCATTTGACACTAGCACTTAAATAA 57.281 29.630 0.00 0.00 0.00 1.40
16 17 9.151471 GTCTCATTTGACACTAGCACTTAAATA 57.849 33.333 0.00 0.00 36.97 1.40
17 18 7.661437 TGTCTCATTTGACACTAGCACTTAAAT 59.339 33.333 0.00 0.00 41.43 1.40
18 19 6.989759 TGTCTCATTTGACACTAGCACTTAAA 59.010 34.615 0.00 0.00 41.43 1.52
19 20 6.521162 TGTCTCATTTGACACTAGCACTTAA 58.479 36.000 0.00 0.00 41.43 1.85
20 21 6.096673 TGTCTCATTTGACACTAGCACTTA 57.903 37.500 0.00 0.00 41.43 2.24
21 22 4.960938 TGTCTCATTTGACACTAGCACTT 58.039 39.130 0.00 0.00 41.43 3.16
22 23 4.039730 ACTGTCTCATTTGACACTAGCACT 59.960 41.667 0.00 0.00 41.43 4.40
23 24 4.310769 ACTGTCTCATTTGACACTAGCAC 58.689 43.478 0.00 0.00 41.43 4.40
24 25 4.607293 ACTGTCTCATTTGACACTAGCA 57.393 40.909 0.00 0.00 41.43 3.49
25 26 4.377841 GCAACTGTCTCATTTGACACTAGC 60.378 45.833 4.48 0.00 41.43 3.42
26 27 4.153117 GGCAACTGTCTCATTTGACACTAG 59.847 45.833 4.48 0.00 41.43 2.57
27 28 4.065088 GGCAACTGTCTCATTTGACACTA 58.935 43.478 4.48 0.00 41.43 2.74
28 29 2.880890 GGCAACTGTCTCATTTGACACT 59.119 45.455 4.48 0.00 41.43 3.55
29 30 2.030805 GGGCAACTGTCTCATTTGACAC 60.031 50.000 7.70 0.00 41.43 3.67
30 31 2.229792 GGGCAACTGTCTCATTTGACA 58.770 47.619 7.70 0.00 43.72 3.58
31 32 2.030805 GTGGGCAACTGTCTCATTTGAC 60.031 50.000 4.48 1.50 32.33 3.18
32 33 2.229792 GTGGGCAACTGTCTCATTTGA 58.770 47.619 4.48 0.00 0.00 2.69
33 34 1.270550 GGTGGGCAACTGTCTCATTTG 59.729 52.381 0.00 0.00 0.00 2.32
34 35 1.145738 AGGTGGGCAACTGTCTCATTT 59.854 47.619 0.00 0.00 0.00 2.32
35 36 0.773644 AGGTGGGCAACTGTCTCATT 59.226 50.000 0.00 0.00 0.00 2.57
36 37 0.773644 AAGGTGGGCAACTGTCTCAT 59.226 50.000 0.00 0.00 0.00 2.90
37 38 0.179020 CAAGGTGGGCAACTGTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
38 39 0.890996 CCAAGGTGGGCAACTGTCTC 60.891 60.000 0.00 0.00 32.67 3.36
39 40 1.151450 CCAAGGTGGGCAACTGTCT 59.849 57.895 0.00 0.00 32.67 3.41
40 41 0.890996 CTCCAAGGTGGGCAACTGTC 60.891 60.000 0.00 0.00 38.32 3.51
41 42 1.151450 CTCCAAGGTGGGCAACTGT 59.849 57.895 0.00 0.00 38.32 3.55
42 43 1.604593 CCTCCAAGGTGGGCAACTG 60.605 63.158 0.00 0.00 38.32 3.16
43 44 2.845345 CCCTCCAAGGTGGGCAACT 61.845 63.158 12.96 0.00 41.30 3.16
44 45 2.283173 CCCTCCAAGGTGGGCAAC 60.283 66.667 12.96 0.00 41.30 4.17
45 46 3.589542 CCCCTCCAAGGTGGGCAA 61.590 66.667 18.76 0.00 45.02 4.52
46 47 4.938756 ACCCCTCCAAGGTGGGCA 62.939 66.667 18.76 0.00 45.02 5.36
47 48 3.590574 AACCCCTCCAAGGTGGGC 61.591 66.667 18.76 0.00 45.02 5.36
48 49 1.137594 TACAACCCCTCCAAGGTGGG 61.138 60.000 17.52 17.52 45.71 4.61
49 50 0.328258 CTACAACCCCTCCAAGGTGG 59.672 60.000 0.14 0.14 37.78 4.61
50 51 0.322546 GCTACAACCCCTCCAAGGTG 60.323 60.000 0.00 0.00 37.78 4.00
51 52 1.838073 CGCTACAACCCCTCCAAGGT 61.838 60.000 0.00 0.00 40.14 3.50
52 53 1.078426 CGCTACAACCCCTCCAAGG 60.078 63.158 0.00 0.00 34.30 3.61
53 54 0.323629 TTCGCTACAACCCCTCCAAG 59.676 55.000 0.00 0.00 0.00 3.61
54 55 0.766131 TTTCGCTACAACCCCTCCAA 59.234 50.000 0.00 0.00 0.00 3.53
55 56 0.323629 CTTTCGCTACAACCCCTCCA 59.676 55.000 0.00 0.00 0.00 3.86
56 57 1.025113 GCTTTCGCTACAACCCCTCC 61.025 60.000 0.00 0.00 0.00 4.30
57 58 0.036294 AGCTTTCGCTACAACCCCTC 60.036 55.000 0.00 0.00 46.79 4.30
58 59 2.067197 AGCTTTCGCTACAACCCCT 58.933 52.632 0.00 0.00 46.79 4.79
59 60 4.716003 AGCTTTCGCTACAACCCC 57.284 55.556 0.00 0.00 46.79 4.95
68 69 1.374252 TGGACTTCGGAGCTTTCGC 60.374 57.895 0.00 0.00 0.00 4.70
69 70 0.038159 AGTGGACTTCGGAGCTTTCG 60.038 55.000 0.00 4.34 0.00 3.46
70 71 2.070028 GAAGTGGACTTCGGAGCTTTC 58.930 52.381 3.83 0.00 42.33 2.62
71 72 2.171341 GAAGTGGACTTCGGAGCTTT 57.829 50.000 3.83 0.00 42.33 3.51
72 73 3.917072 GAAGTGGACTTCGGAGCTT 57.083 52.632 3.83 0.00 42.33 3.74
80 81 5.751586 TCAAGTTGGTAAAGAAGTGGACTT 58.248 37.500 2.34 0.00 39.23 3.01
81 82 5.367945 TCAAGTTGGTAAAGAAGTGGACT 57.632 39.130 2.34 0.00 0.00 3.85
82 83 6.635030 ATTCAAGTTGGTAAAGAAGTGGAC 57.365 37.500 2.34 0.00 0.00 4.02
83 84 6.831353 TGAATTCAAGTTGGTAAAGAAGTGGA 59.169 34.615 5.45 0.00 0.00 4.02
84 85 7.038154 TGAATTCAAGTTGGTAAAGAAGTGG 57.962 36.000 5.45 0.00 0.00 4.00
87 88 9.846248 CCTTATGAATTCAAGTTGGTAAAGAAG 57.154 33.333 13.09 0.00 0.00 2.85
88 89 9.581289 TCCTTATGAATTCAAGTTGGTAAAGAA 57.419 29.630 13.09 0.00 0.00 2.52
89 90 9.231297 CTCCTTATGAATTCAAGTTGGTAAAGA 57.769 33.333 13.09 4.17 0.00 2.52
90 91 9.231297 TCTCCTTATGAATTCAAGTTGGTAAAG 57.769 33.333 13.09 6.61 0.00 1.85
91 92 9.010029 GTCTCCTTATGAATTCAAGTTGGTAAA 57.990 33.333 13.09 0.00 0.00 2.01
92 93 7.610305 GGTCTCCTTATGAATTCAAGTTGGTAA 59.390 37.037 13.09 4.63 0.00 2.85
93 94 7.110155 GGTCTCCTTATGAATTCAAGTTGGTA 58.890 38.462 13.09 0.00 0.00 3.25
94 95 5.946377 GGTCTCCTTATGAATTCAAGTTGGT 59.054 40.000 13.09 0.00 0.00 3.67
95 96 5.065218 CGGTCTCCTTATGAATTCAAGTTGG 59.935 44.000 13.09 12.10 0.00 3.77
96 97 5.874810 TCGGTCTCCTTATGAATTCAAGTTG 59.125 40.000 13.09 0.00 0.00 3.16
97 98 6.049955 TCGGTCTCCTTATGAATTCAAGTT 57.950 37.500 13.09 0.00 0.00 2.66
98 99 5.677319 TCGGTCTCCTTATGAATTCAAGT 57.323 39.130 13.09 0.00 0.00 3.16
99 100 6.109359 AGTTCGGTCTCCTTATGAATTCAAG 58.891 40.000 13.09 6.20 0.00 3.02
100 101 6.049955 AGTTCGGTCTCCTTATGAATTCAA 57.950 37.500 13.09 0.00 0.00 2.69
101 102 5.186992 TGAGTTCGGTCTCCTTATGAATTCA 59.813 40.000 11.26 11.26 34.34 2.57
102 103 5.661458 TGAGTTCGGTCTCCTTATGAATTC 58.339 41.667 0.00 0.00 33.93 2.17
103 104 5.677319 TGAGTTCGGTCTCCTTATGAATT 57.323 39.130 5.59 0.00 33.93 2.17
104 105 5.677319 TTGAGTTCGGTCTCCTTATGAAT 57.323 39.130 5.59 0.00 33.93 2.57
105 106 5.677319 ATTGAGTTCGGTCTCCTTATGAA 57.323 39.130 5.59 0.00 33.93 2.57
106 107 5.186992 TGAATTGAGTTCGGTCTCCTTATGA 59.813 40.000 5.59 0.00 39.80 2.15
107 108 5.419542 TGAATTGAGTTCGGTCTCCTTATG 58.580 41.667 5.59 0.00 39.80 1.90
108 109 5.677319 TGAATTGAGTTCGGTCTCCTTAT 57.323 39.130 5.59 0.00 39.80 1.73
109 110 5.419542 CATGAATTGAGTTCGGTCTCCTTA 58.580 41.667 0.00 0.00 39.80 2.69
110 111 4.256920 CATGAATTGAGTTCGGTCTCCTT 58.743 43.478 0.00 0.93 39.80 3.36
111 112 3.866651 CATGAATTGAGTTCGGTCTCCT 58.133 45.455 0.00 0.00 39.80 3.69
112 113 2.352960 GCATGAATTGAGTTCGGTCTCC 59.647 50.000 0.00 0.00 39.80 3.71
113 114 3.265791 AGCATGAATTGAGTTCGGTCTC 58.734 45.455 0.00 1.82 39.80 3.36
114 115 3.265791 GAGCATGAATTGAGTTCGGTCT 58.734 45.455 0.00 0.00 39.80 3.85
115 116 3.002791 TGAGCATGAATTGAGTTCGGTC 58.997 45.455 0.00 0.00 39.80 4.79
116 117 3.057969 TGAGCATGAATTGAGTTCGGT 57.942 42.857 0.00 0.00 39.80 4.69
117 118 3.438087 ACTTGAGCATGAATTGAGTTCGG 59.562 43.478 0.00 0.00 39.80 4.30
118 119 4.152938 TCACTTGAGCATGAATTGAGTTCG 59.847 41.667 0.00 0.00 39.80 3.95
119 120 5.618056 TCACTTGAGCATGAATTGAGTTC 57.382 39.130 0.00 0.00 37.35 3.01
120 121 5.278660 GGTTCACTTGAGCATGAATTGAGTT 60.279 40.000 0.00 0.00 0.00 3.01
121 122 4.217118 GGTTCACTTGAGCATGAATTGAGT 59.783 41.667 0.00 0.00 0.00 3.41
122 123 4.216902 TGGTTCACTTGAGCATGAATTGAG 59.783 41.667 0.00 0.00 0.00 3.02
123 124 4.022935 GTGGTTCACTTGAGCATGAATTGA 60.023 41.667 0.00 0.00 0.00 2.57
124 125 4.232221 GTGGTTCACTTGAGCATGAATTG 58.768 43.478 0.00 0.00 0.00 2.32
125 126 3.058016 CGTGGTTCACTTGAGCATGAATT 60.058 43.478 0.00 0.00 34.35 2.17
126 127 2.485426 CGTGGTTCACTTGAGCATGAAT 59.515 45.455 0.00 0.00 34.35 2.57
127 128 1.872952 CGTGGTTCACTTGAGCATGAA 59.127 47.619 0.00 0.00 34.35 2.57
128 129 1.511850 CGTGGTTCACTTGAGCATGA 58.488 50.000 0.00 0.00 34.35 3.07
129 130 0.518636 CCGTGGTTCACTTGAGCATG 59.481 55.000 0.00 0.00 31.34 4.06
130 131 0.606401 CCCGTGGTTCACTTGAGCAT 60.606 55.000 0.00 0.00 31.34 3.79
131 132 1.227823 CCCGTGGTTCACTTGAGCA 60.228 57.895 0.00 0.00 31.34 4.26
132 133 1.227853 ACCCGTGGTTCACTTGAGC 60.228 57.895 0.00 0.00 27.29 4.26
133 134 0.105964 TCACCCGTGGTTCACTTGAG 59.894 55.000 0.00 0.00 31.02 3.02
134 135 0.762418 ATCACCCGTGGTTCACTTGA 59.238 50.000 0.00 0.00 31.02 3.02
135 136 0.874390 CATCACCCGTGGTTCACTTG 59.126 55.000 0.00 0.00 31.02 3.16
136 137 0.762418 TCATCACCCGTGGTTCACTT 59.238 50.000 0.00 0.00 31.02 3.16
137 138 0.984230 ATCATCACCCGTGGTTCACT 59.016 50.000 0.00 0.00 31.02 3.41
138 139 2.684001 TATCATCACCCGTGGTTCAC 57.316 50.000 0.00 0.00 31.02 3.18
139 140 3.433031 GGAATATCATCACCCGTGGTTCA 60.433 47.826 0.00 0.00 31.02 3.18
140 141 3.139077 GGAATATCATCACCCGTGGTTC 58.861 50.000 0.00 0.00 31.02 3.62
141 142 2.484770 CGGAATATCATCACCCGTGGTT 60.485 50.000 0.00 0.00 35.83 3.67
142 143 1.070134 CGGAATATCATCACCCGTGGT 59.930 52.381 0.00 0.00 35.83 4.16
143 144 1.795768 CGGAATATCATCACCCGTGG 58.204 55.000 0.00 0.00 35.83 4.94
144 145 1.148310 GCGGAATATCATCACCCGTG 58.852 55.000 0.00 0.00 41.95 4.94
145 146 1.048601 AGCGGAATATCATCACCCGT 58.951 50.000 0.00 0.00 41.95 5.28
146 147 1.270305 ACAGCGGAATATCATCACCCG 60.270 52.381 0.00 0.00 42.74 5.28
147 148 2.550830 ACAGCGGAATATCATCACCC 57.449 50.000 0.00 0.00 0.00 4.61
148 149 4.335315 TCAAAACAGCGGAATATCATCACC 59.665 41.667 0.00 0.00 0.00 4.02
149 150 5.484173 TCAAAACAGCGGAATATCATCAC 57.516 39.130 0.00 0.00 0.00 3.06
150 151 6.507958 TTTCAAAACAGCGGAATATCATCA 57.492 33.333 0.00 0.00 0.00 3.07
151 152 7.195646 TGATTTCAAAACAGCGGAATATCATC 58.804 34.615 0.00 0.00 0.00 2.92
152 153 7.099266 TGATTTCAAAACAGCGGAATATCAT 57.901 32.000 0.00 0.00 0.00 2.45
153 154 6.507958 TGATTTCAAAACAGCGGAATATCA 57.492 33.333 0.00 0.00 0.00 2.15
154 155 7.810766 TTTGATTTCAAAACAGCGGAATATC 57.189 32.000 3.31 0.00 42.26 1.63
168 169 7.322664 GCCATCTGTTTCCTATTTGATTTCAA 58.677 34.615 0.00 0.00 0.00 2.69
169 170 6.404623 CGCCATCTGTTTCCTATTTGATTTCA 60.405 38.462 0.00 0.00 0.00 2.69
170 171 5.973565 CGCCATCTGTTTCCTATTTGATTTC 59.026 40.000 0.00 0.00 0.00 2.17
171 172 5.679638 GCGCCATCTGTTTCCTATTTGATTT 60.680 40.000 0.00 0.00 0.00 2.17
172 173 4.202050 GCGCCATCTGTTTCCTATTTGATT 60.202 41.667 0.00 0.00 0.00 2.57
173 174 3.316308 GCGCCATCTGTTTCCTATTTGAT 59.684 43.478 0.00 0.00 0.00 2.57
174 175 2.682856 GCGCCATCTGTTTCCTATTTGA 59.317 45.455 0.00 0.00 0.00 2.69
175 176 2.684881 AGCGCCATCTGTTTCCTATTTG 59.315 45.455 2.29 0.00 0.00 2.32
176 177 3.004752 AGCGCCATCTGTTTCCTATTT 57.995 42.857 2.29 0.00 0.00 1.40
177 178 2.684881 CAAGCGCCATCTGTTTCCTATT 59.315 45.455 2.29 0.00 0.00 1.73
178 179 2.092968 TCAAGCGCCATCTGTTTCCTAT 60.093 45.455 2.29 0.00 0.00 2.57
179 180 1.277842 TCAAGCGCCATCTGTTTCCTA 59.722 47.619 2.29 0.00 0.00 2.94
180 181 0.036732 TCAAGCGCCATCTGTTTCCT 59.963 50.000 2.29 0.00 0.00 3.36
181 182 0.449388 CTCAAGCGCCATCTGTTTCC 59.551 55.000 2.29 0.00 0.00 3.13
182 183 1.160137 ACTCAAGCGCCATCTGTTTC 58.840 50.000 2.29 0.00 0.00 2.78
183 184 1.609208 AACTCAAGCGCCATCTGTTT 58.391 45.000 2.29 0.00 0.00 2.83
184 185 1.609208 AAACTCAAGCGCCATCTGTT 58.391 45.000 2.29 0.15 0.00 3.16
185 186 1.609208 AAAACTCAAGCGCCATCTGT 58.391 45.000 2.29 0.00 0.00 3.41
186 187 2.712057 AAAAACTCAAGCGCCATCTG 57.288 45.000 2.29 0.00 0.00 2.90
202 203 8.686334 GGATAGTTTCTCATGCCAAGATAAAAA 58.314 33.333 0.00 0.00 0.00 1.94
203 204 7.285401 GGGATAGTTTCTCATGCCAAGATAAAA 59.715 37.037 0.00 0.00 33.16 1.52
204 205 6.772716 GGGATAGTTTCTCATGCCAAGATAAA 59.227 38.462 0.00 0.00 33.16 1.40
205 206 6.299141 GGGATAGTTTCTCATGCCAAGATAA 58.701 40.000 0.00 0.00 33.16 1.75
206 207 5.221925 GGGGATAGTTTCTCATGCCAAGATA 60.222 44.000 0.00 0.00 34.52 1.98
207 208 4.446889 GGGGATAGTTTCTCATGCCAAGAT 60.447 45.833 0.00 0.00 34.52 2.40
208 209 3.117888 GGGGATAGTTTCTCATGCCAAGA 60.118 47.826 0.00 0.00 34.52 3.02
209 210 3.217626 GGGGATAGTTTCTCATGCCAAG 58.782 50.000 0.00 0.00 34.52 3.61
210 211 2.091885 GGGGGATAGTTTCTCATGCCAA 60.092 50.000 0.00 0.00 34.52 4.52
211 212 1.494721 GGGGGATAGTTTCTCATGCCA 59.505 52.381 0.00 0.00 34.52 4.92
212 213 2.278332 GGGGGATAGTTTCTCATGCC 57.722 55.000 0.00 0.00 32.21 4.40
228 229 2.302587 TTGTAAGCAAAAGGAGGGGG 57.697 50.000 0.00 0.00 0.00 5.40
229 230 3.430453 TGATTGTAAGCAAAAGGAGGGG 58.570 45.455 0.00 0.00 38.21 4.79
230 231 4.952335 AGATGATTGTAAGCAAAAGGAGGG 59.048 41.667 0.00 0.00 38.21 4.30
231 232 5.649395 TGAGATGATTGTAAGCAAAAGGAGG 59.351 40.000 0.00 0.00 38.21 4.30
232 233 6.373774 AGTGAGATGATTGTAAGCAAAAGGAG 59.626 38.462 0.00 0.00 38.21 3.69
233 234 6.240894 AGTGAGATGATTGTAAGCAAAAGGA 58.759 36.000 0.00 0.00 38.21 3.36
234 235 6.506500 AGTGAGATGATTGTAAGCAAAAGG 57.493 37.500 0.00 0.00 38.21 3.11
235 236 7.025963 GGAAGTGAGATGATTGTAAGCAAAAG 58.974 38.462 0.00 0.00 38.21 2.27
236 237 6.071952 GGGAAGTGAGATGATTGTAAGCAAAA 60.072 38.462 0.00 0.00 38.21 2.44
237 238 5.415701 GGGAAGTGAGATGATTGTAAGCAAA 59.584 40.000 0.00 0.00 38.21 3.68
238 239 4.943705 GGGAAGTGAGATGATTGTAAGCAA 59.056 41.667 0.00 0.00 39.16 3.91
239 240 4.225942 AGGGAAGTGAGATGATTGTAAGCA 59.774 41.667 0.00 0.00 0.00 3.91
240 241 4.775236 AGGGAAGTGAGATGATTGTAAGC 58.225 43.478 0.00 0.00 0.00 3.09
241 242 6.176183 ACAAGGGAAGTGAGATGATTGTAAG 58.824 40.000 0.00 0.00 0.00 2.34
242 243 6.126863 ACAAGGGAAGTGAGATGATTGTAA 57.873 37.500 0.00 0.00 0.00 2.41
243 244 5.762179 ACAAGGGAAGTGAGATGATTGTA 57.238 39.130 0.00 0.00 0.00 2.41
244 245 4.647564 ACAAGGGAAGTGAGATGATTGT 57.352 40.909 0.00 0.00 0.00 2.71
245 246 6.409704 TCTTACAAGGGAAGTGAGATGATTG 58.590 40.000 0.00 0.00 28.14 2.67
246 247 6.627087 TCTTACAAGGGAAGTGAGATGATT 57.373 37.500 0.00 0.00 28.14 2.57
247 248 6.441924 TCTTCTTACAAGGGAAGTGAGATGAT 59.558 38.462 0.00 0.00 39.67 2.45
248 249 5.780282 TCTTCTTACAAGGGAAGTGAGATGA 59.220 40.000 0.00 0.00 39.67 2.92
249 250 6.042638 TCTTCTTACAAGGGAAGTGAGATG 57.957 41.667 0.00 0.00 39.67 2.90
250 251 6.882768 ATCTTCTTACAAGGGAAGTGAGAT 57.117 37.500 0.00 0.00 39.67 2.75
251 252 7.792364 TTATCTTCTTACAAGGGAAGTGAGA 57.208 36.000 0.00 0.00 39.67 3.27
252 253 9.757227 CTATTATCTTCTTACAAGGGAAGTGAG 57.243 37.037 0.00 0.00 39.67 3.51
253 254 9.268282 ACTATTATCTTCTTACAAGGGAAGTGA 57.732 33.333 0.00 0.00 39.67 3.41
254 255 9.319143 CACTATTATCTTCTTACAAGGGAAGTG 57.681 37.037 0.00 0.00 39.67 3.16
255 256 9.047947 ACACTATTATCTTCTTACAAGGGAAGT 57.952 33.333 0.00 0.00 39.67 3.01
269 270 9.664332 GGATGATGAGCAATACACTATTATCTT 57.336 33.333 0.00 0.00 0.00 2.40
270 271 8.263640 GGGATGATGAGCAATACACTATTATCT 58.736 37.037 0.00 0.00 0.00 1.98
271 272 7.223582 CGGGATGATGAGCAATACACTATTATC 59.776 40.741 0.00 0.00 0.00 1.75
272 273 7.044181 CGGGATGATGAGCAATACACTATTAT 58.956 38.462 0.00 0.00 0.00 1.28
273 274 6.014584 ACGGGATGATGAGCAATACACTATTA 60.015 38.462 0.00 0.00 0.00 0.98
274 275 5.221722 ACGGGATGATGAGCAATACACTATT 60.222 40.000 0.00 0.00 0.00 1.73
275 276 4.284490 ACGGGATGATGAGCAATACACTAT 59.716 41.667 0.00 0.00 0.00 2.12
276 277 3.641436 ACGGGATGATGAGCAATACACTA 59.359 43.478 0.00 0.00 0.00 2.74
277 278 2.435805 ACGGGATGATGAGCAATACACT 59.564 45.455 0.00 0.00 0.00 3.55
278 279 2.545526 CACGGGATGATGAGCAATACAC 59.454 50.000 0.00 0.00 0.00 2.90
279 280 2.170397 ACACGGGATGATGAGCAATACA 59.830 45.455 0.00 0.00 0.00 2.29
280 281 2.838736 ACACGGGATGATGAGCAATAC 58.161 47.619 0.00 0.00 0.00 1.89
281 282 4.528206 AGATACACGGGATGATGAGCAATA 59.472 41.667 0.00 0.00 0.00 1.90
282 283 3.326006 AGATACACGGGATGATGAGCAAT 59.674 43.478 0.00 0.00 0.00 3.56
283 284 2.700371 AGATACACGGGATGATGAGCAA 59.300 45.455 0.00 0.00 0.00 3.91
284 285 2.036346 CAGATACACGGGATGATGAGCA 59.964 50.000 0.00 0.00 0.00 4.26
285 286 2.681706 CAGATACACGGGATGATGAGC 58.318 52.381 0.00 0.00 0.00 4.26
286 287 2.298446 AGCAGATACACGGGATGATGAG 59.702 50.000 0.00 0.00 0.00 2.90
287 288 2.319844 AGCAGATACACGGGATGATGA 58.680 47.619 0.00 0.00 0.00 2.92
288 289 2.804527 CAAGCAGATACACGGGATGATG 59.195 50.000 0.00 0.00 0.00 3.07
289 290 2.700371 TCAAGCAGATACACGGGATGAT 59.300 45.455 0.00 0.00 0.00 2.45
290 291 2.107366 TCAAGCAGATACACGGGATGA 58.893 47.619 0.00 0.00 0.00 2.92
291 292 2.602257 TCAAGCAGATACACGGGATG 57.398 50.000 0.00 0.00 0.00 3.51
292 293 2.808202 GCATCAAGCAGATACACGGGAT 60.808 50.000 0.00 0.00 44.79 3.85
293 294 1.473257 GCATCAAGCAGATACACGGGA 60.473 52.381 0.00 0.00 44.79 5.14
294 295 0.940126 GCATCAAGCAGATACACGGG 59.060 55.000 0.00 0.00 44.79 5.28
339 340 9.325150 CGAGCTAATTCAACTTTTTCGATAAAA 57.675 29.630 2.68 4.43 32.75 1.52
340 341 8.500773 ACGAGCTAATTCAACTTTTTCGATAAA 58.499 29.630 1.08 1.08 0.00 1.40
341 342 8.025243 ACGAGCTAATTCAACTTTTTCGATAA 57.975 30.769 0.00 0.00 0.00 1.75
342 343 7.591006 ACGAGCTAATTCAACTTTTTCGATA 57.409 32.000 0.00 0.00 0.00 2.92
343 344 6.481954 ACGAGCTAATTCAACTTTTTCGAT 57.518 33.333 0.00 0.00 0.00 3.59
344 345 5.917541 ACGAGCTAATTCAACTTTTTCGA 57.082 34.783 0.00 0.00 0.00 3.71
345 346 5.722141 CGTACGAGCTAATTCAACTTTTTCG 59.278 40.000 10.44 0.00 0.00 3.46
346 347 6.013689 CCGTACGAGCTAATTCAACTTTTTC 58.986 40.000 18.76 0.00 0.00 2.29
347 348 5.467735 ACCGTACGAGCTAATTCAACTTTTT 59.532 36.000 18.76 0.00 0.00 1.94
348 349 4.992951 ACCGTACGAGCTAATTCAACTTTT 59.007 37.500 18.76 0.00 0.00 2.27
349 350 4.387862 CACCGTACGAGCTAATTCAACTTT 59.612 41.667 18.76 0.00 0.00 2.66
350 351 3.924686 CACCGTACGAGCTAATTCAACTT 59.075 43.478 18.76 0.00 0.00 2.66
380 381 0.388520 CATCACTCGCTCGGACAACA 60.389 55.000 0.00 0.00 0.00 3.33
392 393 2.405357 CAGACGTTCGACAACATCACTC 59.595 50.000 0.00 0.00 32.14 3.51
397 398 2.502213 TGTCAGACGTTCGACAACAT 57.498 45.000 16.02 0.00 39.14 2.71
398 399 2.124122 CATGTCAGACGTTCGACAACA 58.876 47.619 20.50 7.19 44.78 3.33
406 407 2.929960 CGTCACTACATGTCAGACGTT 58.070 47.619 26.37 0.00 44.87 3.99
410 411 2.791655 ACCTCGTCACTACATGTCAGA 58.208 47.619 0.00 0.00 0.00 3.27
412 413 4.330944 AAAACCTCGTCACTACATGTCA 57.669 40.909 0.00 0.00 0.00 3.58
485 487 1.589993 CTCGCCACTATGCTCGGTG 60.590 63.158 0.00 0.00 0.00 4.94
488 490 1.589993 CACCTCGCCACTATGCTCG 60.590 63.158 0.00 0.00 0.00 5.03
489 491 0.175760 TTCACCTCGCCACTATGCTC 59.824 55.000 0.00 0.00 0.00 4.26
490 492 0.613260 TTTCACCTCGCCACTATGCT 59.387 50.000 0.00 0.00 0.00 3.79
491 493 1.009829 CTTTCACCTCGCCACTATGC 58.990 55.000 0.00 0.00 0.00 3.14
492 494 2.672961 TCTTTCACCTCGCCACTATG 57.327 50.000 0.00 0.00 0.00 2.23
493 495 3.600388 CTTTCTTTCACCTCGCCACTAT 58.400 45.455 0.00 0.00 0.00 2.12
494 496 2.870435 GCTTTCTTTCACCTCGCCACTA 60.870 50.000 0.00 0.00 0.00 2.74
495 497 1.884235 CTTTCTTTCACCTCGCCACT 58.116 50.000 0.00 0.00 0.00 4.00
496 498 0.238553 GCTTTCTTTCACCTCGCCAC 59.761 55.000 0.00 0.00 0.00 5.01
497 499 1.227999 CGCTTTCTTTCACCTCGCCA 61.228 55.000 0.00 0.00 0.00 5.69
498 500 1.497722 CGCTTTCTTTCACCTCGCC 59.502 57.895 0.00 0.00 0.00 5.54
499 501 1.497722 CCGCTTTCTTTCACCTCGC 59.502 57.895 0.00 0.00 0.00 5.03
500 502 1.497722 GCCGCTTTCTTTCACCTCG 59.502 57.895 0.00 0.00 0.00 4.63
501 503 0.949105 TCGCCGCTTTCTTTCACCTC 60.949 55.000 0.00 0.00 0.00 3.85
529 542 5.297029 CCCCCTCTTTATTTCGATTCTTCAC 59.703 44.000 0.00 0.00 0.00 3.18
655 668 6.292168 CGATCGCCGATTACCAATATTATTCC 60.292 42.308 0.26 0.00 41.76 3.01
671 684 2.584970 GACCATTGCGATCGCCGA 60.585 61.111 35.12 24.41 41.76 5.54
876 916 2.354203 GCTTGGTAGTCTGACAGGAAGG 60.354 54.545 10.88 0.00 0.00 3.46
925 965 2.031465 GACGCCGAAACAGGGGAA 59.969 61.111 7.08 0.00 45.92 3.97
1083 1206 4.092529 CACAAGCATGCTACTGACTACTTG 59.907 45.833 23.00 13.66 39.26 3.16
1088 1211 2.847327 ACACAAGCATGCTACTGACT 57.153 45.000 23.00 0.00 0.00 3.41
1120 1243 0.249322 ACCGCGGTATTCTGAATCGG 60.249 55.000 33.34 20.28 40.98 4.18
1197 1321 6.091441 ACTGTTCAAATCTTAGTGAAGCGATC 59.909 38.462 0.00 0.00 34.52 3.69
1203 1327 8.405531 CAAGGAAACTGTTCAAATCTTAGTGAA 58.594 33.333 0.00 0.00 42.68 3.18
1207 1331 9.617975 GAATCAAGGAAACTGTTCAAATCTTAG 57.382 33.333 0.00 0.00 42.68 2.18
1208 1332 9.354673 AGAATCAAGGAAACTGTTCAAATCTTA 57.645 29.630 0.00 0.00 42.68 2.10
1230 1354 9.458727 AGTGATTTTGATGTCATGAACTAGAAT 57.541 29.630 0.00 0.00 0.00 2.40
1352 1476 8.006298 TGAAACAGTTCTGTTGTCCAAAATAT 57.994 30.769 17.16 0.00 34.60 1.28
1354 1478 6.152661 TCTGAAACAGTTCTGTTGTCCAAAAT 59.847 34.615 17.16 1.26 35.01 1.82
1355 1479 5.475220 TCTGAAACAGTTCTGTTGTCCAAAA 59.525 36.000 17.16 6.40 35.01 2.44
1365 1489 7.329226 ACACAAAACAATTCTGAAACAGTTCTG 59.671 33.333 0.00 0.19 34.60 3.02
1405 1529 5.592688 TGTGGAACAGGAAAAGTAAGAAAGG 59.407 40.000 0.00 0.00 45.67 3.11
1445 1569 1.598882 GATTTGGATCCTTCCCGCTC 58.401 55.000 14.23 0.00 41.83 5.03
1520 1644 0.878523 TGCCATCCGCGTACTTATGC 60.879 55.000 4.92 0.00 42.08 3.14
1584 1708 0.608856 AGGGTTGCAATGCGTGATGA 60.609 50.000 0.59 0.00 0.00 2.92
1607 1731 1.909700 TTGCCTGGATCACCTTGTTC 58.090 50.000 0.00 0.00 37.04 3.18
1695 1828 5.769662 TGGAGCAAGATGTTACAAGAAATGT 59.230 36.000 0.00 0.00 46.36 2.71
1731 1864 2.032620 TCCGAGATGAAGCTAGGGAAC 58.967 52.381 0.00 0.00 32.24 3.62
1905 2038 2.892425 CAGATCGCCTGCCCGTTC 60.892 66.667 0.00 0.00 35.89 3.95
1970 2103 6.122277 TGAAACTCTGAAGAGGAAATTGTGT 58.878 36.000 11.87 0.00 46.13 3.72
1982 2115 3.935315 TCCATGCTCTGAAACTCTGAAG 58.065 45.455 0.00 0.00 0.00 3.02
2016 2156 6.646240 CCATACAAAGTTCCCATTTCACAAAG 59.354 38.462 0.00 0.00 0.00 2.77
2038 2180 4.564406 GGAAGTCGAATATGATCTGCCCAT 60.564 45.833 0.00 0.00 0.00 4.00
2348 2490 1.810606 CGTCCCCGATCTCCCTCATG 61.811 65.000 0.00 0.00 35.63 3.07
2402 2544 8.064336 ACCTCAGTAGTAGTAATACCAAACAG 57.936 38.462 4.20 0.00 0.00 3.16
2405 2547 9.979897 TCTTACCTCAGTAGTAGTAATACCAAA 57.020 33.333 4.20 0.00 0.00 3.28
2411 2553 9.476928 ACACATTCTTACCTCAGTAGTAGTAAT 57.523 33.333 0.00 0.00 0.00 1.89
2412 2554 8.874744 ACACATTCTTACCTCAGTAGTAGTAA 57.125 34.615 0.00 0.00 0.00 2.24
2413 2555 8.327271 AGACACATTCTTACCTCAGTAGTAGTA 58.673 37.037 0.00 0.00 0.00 1.82
2414 2556 7.121463 CAGACACATTCTTACCTCAGTAGTAGT 59.879 40.741 0.00 0.00 28.96 2.73
2415 2557 7.337184 TCAGACACATTCTTACCTCAGTAGTAG 59.663 40.741 0.00 0.00 28.96 2.57
2416 2558 7.173032 TCAGACACATTCTTACCTCAGTAGTA 58.827 38.462 0.00 0.00 28.96 1.82
2417 2559 6.010850 TCAGACACATTCTTACCTCAGTAGT 58.989 40.000 0.00 0.00 28.96 2.73
2418 2560 6.375736 TCTCAGACACATTCTTACCTCAGTAG 59.624 42.308 0.00 0.00 28.96 2.57
2427 2569 6.358974 TCCACAATCTCAGACACATTCTTA 57.641 37.500 0.00 0.00 28.96 2.10
2471 2613 2.140717 GGTTCTTTCACCACACCGTAG 58.859 52.381 0.00 0.00 36.73 3.51
2579 2721 2.611518 CCAATGAAGTCGTCTCTGGTC 58.388 52.381 0.00 0.00 0.00 4.02
2597 2739 2.454336 ACTCGATCTGTATGGACCCA 57.546 50.000 0.00 0.00 0.00 4.51
2654 2796 1.003839 GATCTGACCACCGTTGCCA 60.004 57.895 0.00 0.00 0.00 4.92
2663 2805 0.686789 CCCTGTGTGTGATCTGACCA 59.313 55.000 0.00 0.00 0.00 4.02
2689 2831 1.448189 GCTCTGCTCTGGTCTGCTG 60.448 63.158 0.00 0.00 0.00 4.41
2696 2838 0.548031 TAATTGGGGCTCTGCTCTGG 59.452 55.000 0.00 0.00 0.00 3.86
2704 2846 1.423161 AGAGATGGCTAATTGGGGCTC 59.577 52.381 7.93 0.00 0.00 4.70
2708 2850 3.448301 TGCAAAAGAGATGGCTAATTGGG 59.552 43.478 0.00 0.00 0.00 4.12
2739 2898 8.287503 TCGATCAAATGAATGATGATTAGCAAG 58.712 33.333 0.00 0.00 40.08 4.01
2858 3017 1.645704 CGACGGTGATCGACCTCAGT 61.646 60.000 0.00 0.00 45.13 3.41
3107 3266 4.089839 CCAGCCCTGGGGTTATCT 57.910 61.111 16.31 0.00 46.81 1.98
3218 3377 1.740285 CCACGATTCCCCGGTAGAG 59.260 63.158 0.00 0.00 0.00 2.43
3261 3420 5.070580 GCCTTCCATACAAGATACTACCACT 59.929 44.000 0.00 0.00 0.00 4.00
3262 3421 5.163343 TGCCTTCCATACAAGATACTACCAC 60.163 44.000 0.00 0.00 0.00 4.16
3263 3422 4.966168 TGCCTTCCATACAAGATACTACCA 59.034 41.667 0.00 0.00 0.00 3.25
3264 3423 5.304614 TCTGCCTTCCATACAAGATACTACC 59.695 44.000 0.00 0.00 0.00 3.18
3295 3454 0.035176 GTAACACACCCAACCGGCTA 59.965 55.000 0.00 0.00 33.26 3.93
3353 3513 5.876357 ACAGTATGAGCTGTTCCCTTTAAA 58.124 37.500 0.00 0.00 46.45 1.52
3380 3540 4.208873 GTCATCTGATCTTGATGCTCGTTC 59.791 45.833 18.22 6.56 40.59 3.95
3405 3565 6.256539 GGGCTACATTACATATGTGATGATCG 59.743 42.308 34.66 24.54 42.51 3.69
3412 3572 3.398406 TGCGGGCTACATTACATATGTG 58.602 45.455 18.81 4.44 33.76 3.21
3417 3577 2.021457 GGTTTGCGGGCTACATTACAT 58.979 47.619 0.00 0.00 0.00 2.29
3418 3578 1.003812 AGGTTTGCGGGCTACATTACA 59.996 47.619 0.00 0.00 0.00 2.41
3419 3579 1.746470 AGGTTTGCGGGCTACATTAC 58.254 50.000 0.00 0.00 0.00 1.89
3420 3580 2.026636 AGAAGGTTTGCGGGCTACATTA 60.027 45.455 0.00 0.00 0.00 1.90
3421 3581 1.173913 GAAGGTTTGCGGGCTACATT 58.826 50.000 0.00 0.00 0.00 2.71
3471 3631 5.191426 ACAAAGGATGGAAGATCATGTCAG 58.809 41.667 0.00 0.00 0.00 3.51
3529 3689 4.837896 TGGAGATGCTCTTAGTATCGTG 57.162 45.455 0.00 0.00 41.40 4.35
3530 3690 4.261238 CGTTGGAGATGCTCTTAGTATCGT 60.261 45.833 0.00 0.00 41.40 3.73
3531 3691 4.222886 CGTTGGAGATGCTCTTAGTATCG 58.777 47.826 0.00 0.00 41.40 2.92
3532 3692 4.551388 CCGTTGGAGATGCTCTTAGTATC 58.449 47.826 0.00 0.00 37.56 2.24
3533 3693 3.243907 GCCGTTGGAGATGCTCTTAGTAT 60.244 47.826 0.00 0.00 0.00 2.12
3636 3796 1.202143 GCTAAATTTTAGCGCGGCTGT 60.202 47.619 21.75 0.00 40.10 4.40
3661 3823 4.135153 CCTGCTGGAGCTACGCGT 62.135 66.667 19.17 19.17 42.66 6.01
3840 4035 5.277634 GCACGGTAGTTTTCAATGTAGTTGT 60.278 40.000 0.00 0.00 38.95 3.32
3850 4045 3.794717 TGTAGTTGCACGGTAGTTTTCA 58.205 40.909 0.00 0.00 0.00 2.69
3851 4046 5.636543 AGTATGTAGTTGCACGGTAGTTTTC 59.363 40.000 0.00 0.00 0.00 2.29
3852 4047 5.544650 AGTATGTAGTTGCACGGTAGTTTT 58.455 37.500 0.00 0.00 0.00 2.43
3853 4048 5.143376 AGTATGTAGTTGCACGGTAGTTT 57.857 39.130 0.00 0.00 0.00 2.66
3854 4049 4.796038 AGTATGTAGTTGCACGGTAGTT 57.204 40.909 0.00 0.00 0.00 2.24
3860 4055 3.303495 GCACTGTAGTATGTAGTTGCACG 59.697 47.826 0.00 0.00 0.00 5.34
3870 4065 5.479306 AGGTTGTAGTTGCACTGTAGTATG 58.521 41.667 0.00 0.00 0.00 2.39
3878 4075 2.969950 TGGAGTAGGTTGTAGTTGCACT 59.030 45.455 0.00 0.00 0.00 4.40
4037 4234 4.681978 GTTGGACAGGCGTCGGCT 62.682 66.667 16.63 16.63 43.61 5.52
4071 4268 0.682209 CTGGGTGGAAAGGATGGCAG 60.682 60.000 0.00 0.00 0.00 4.85
4076 4273 0.332972 GCCTTCTGGGTGGAAAGGAT 59.667 55.000 4.60 0.00 37.43 3.24
4085 4282 4.699522 GGAACGCGCCTTCTGGGT 62.700 66.667 16.85 0.00 37.43 4.51
4099 4296 3.562779 GAAGGACGTCGTGGCGGAA 62.563 63.158 12.13 0.00 35.98 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.