Multiple sequence alignment - TraesCS3D01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310200 chr3D 100.000 5952 0 0 1 5952 424354742 424348791 0.000000e+00 10992.0
1 TraesCS3D01G310200 chr3D 79.058 191 35 3 1418 1607 105704986 105705172 6.260000e-25 126.0
2 TraesCS3D01G310200 chr3D 83.846 130 21 0 1479 1608 106315593 106315722 2.250000e-24 124.0
3 TraesCS3D01G310200 chr3D 78.836 189 34 5 1418 1603 106737066 106737251 8.100000e-24 122.0
4 TraesCS3D01G310200 chr3D 78.307 189 35 5 1418 1603 105891850 105892035 3.770000e-22 117.0
5 TraesCS3D01G310200 chr3D 77.157 197 25 16 3551 3737 64763365 64763551 4.910000e-16 97.1
6 TraesCS3D01G310200 chr3B 90.396 4748 227 109 475 5143 554120626 554116029 0.000000e+00 6030.0
7 TraesCS3D01G310200 chr3B 93.333 480 15 7 1 478 554121412 554120948 0.000000e+00 693.0
8 TraesCS3D01G310200 chr3B 87.674 430 27 13 5537 5952 554099176 554098759 1.500000e-130 477.0
9 TraesCS3D01G310200 chr3B 92.442 172 9 2 5374 5545 554099737 554099570 5.960000e-60 243.0
10 TraesCS3D01G310200 chr3B 83.704 135 22 0 1473 1607 157377442 157377576 1.740000e-25 128.0
11 TraesCS3D01G310200 chr3B 77.249 189 37 5 1418 1603 157660744 157660929 8.160000e-19 106.0
12 TraesCS3D01G310200 chr3B 85.859 99 8 4 5233 5327 554115915 554115819 3.800000e-17 100.0
13 TraesCS3D01G310200 chr3A 89.344 2712 145 77 485 3146 564437140 564439757 0.000000e+00 3275.0
14 TraesCS3D01G310200 chr3A 88.976 2041 102 52 3156 5143 564440027 564441997 0.000000e+00 2409.0
15 TraesCS3D01G310200 chr3A 88.141 624 35 16 5357 5952 564442232 564442844 0.000000e+00 706.0
16 TraesCS3D01G310200 chr3A 86.364 484 32 17 1 454 564436366 564436845 1.150000e-136 497.0
17 TraesCS3D01G310200 chr7B 89.420 690 38 20 1178 1856 243910035 243910700 0.000000e+00 837.0
18 TraesCS3D01G310200 chr7B 88.124 421 34 11 1954 2369 243910743 243911152 2.490000e-133 486.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310200 chr3D 424348791 424354742 5951 True 10992.000000 10992 100.000000 1 5952 1 chr3D.!!$R1 5951
1 TraesCS3D01G310200 chr3B 554115819 554121412 5593 True 2274.333333 6030 89.862667 1 5327 3 chr3B.!!$R2 5326
2 TraesCS3D01G310200 chr3B 554098759 554099737 978 True 360.000000 477 90.058000 5374 5952 2 chr3B.!!$R1 578
3 TraesCS3D01G310200 chr3A 564436366 564442844 6478 False 1721.750000 3275 88.206250 1 5952 4 chr3A.!!$F1 5951
4 TraesCS3D01G310200 chr7B 243910035 243911152 1117 False 661.500000 837 88.772000 1178 2369 2 chr7B.!!$F1 1191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1306 0.028505 GCAAGCACATCACATAGCGG 59.971 55.000 0.00 0.0 0.00 5.52 F
983 1362 0.108898 CCACGCAAGAGTGAGAGAGG 60.109 60.000 5.49 0.0 44.43 3.69 F
2479 2955 0.456824 CGTCTGGTCGATCAGGTGTG 60.457 60.000 25.00 9.1 35.58 3.82 F
3952 4731 1.150081 CCTGCATGATCCACCTCCC 59.850 63.158 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2648 3133 0.107654 GCTTAGATCACCCGTGGCTT 60.108 55.000 0.00 0.00 0.00 4.35 R
2924 3413 1.215117 GAGCGAGCTGAGCTTCACT 59.785 57.895 9.00 6.46 46.13 3.41 R
4476 5281 0.598065 ATTCTGGTGCGTCCTTTTGC 59.402 50.000 0.00 0.00 37.07 3.68 R
5893 7234 0.029834 GTGTGCTGAGCCACAGTTTG 59.970 55.000 17.31 0.00 45.54 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 102 0.465097 ATGCCGGATCAGAAAGCTGG 60.465 55.000 5.05 0.00 42.53 4.85
98 103 1.078143 GCCGGATCAGAAAGCTGGT 60.078 57.895 5.05 0.00 42.53 4.00
99 104 1.372087 GCCGGATCAGAAAGCTGGTG 61.372 60.000 5.05 0.00 42.53 4.17
100 105 0.036010 CCGGATCAGAAAGCTGGTGT 60.036 55.000 0.00 0.00 42.53 4.16
101 106 1.081892 CGGATCAGAAAGCTGGTGTG 58.918 55.000 0.00 0.00 42.53 3.82
113 128 3.216292 GGTGTGGTGTGGTGTGGC 61.216 66.667 0.00 0.00 0.00 5.01
137 152 0.899717 TTTAGGCGGGGTGTCGTAGT 60.900 55.000 0.00 0.00 0.00 2.73
138 153 0.034574 TTAGGCGGGGTGTCGTAGTA 60.035 55.000 0.00 0.00 0.00 1.82
140 155 2.048603 GGCGGGGTGTCGTAGTAGT 61.049 63.158 0.00 0.00 0.00 2.73
153 171 5.106038 TGTCGTAGTAGTAGTGTTGATTGGG 60.106 44.000 0.00 0.00 0.00 4.12
183 201 3.150949 TGCTGCTGCAGTGTAGGT 58.849 55.556 28.50 0.00 45.31 3.08
184 202 2.361189 TGCTGCTGCAGTGTAGGTA 58.639 52.632 28.50 1.18 45.31 3.08
185 203 0.684535 TGCTGCTGCAGTGTAGGTAA 59.315 50.000 28.50 4.34 45.31 2.85
471 507 2.123077 CGGAGCAGGGAGGAGGAT 60.123 66.667 0.00 0.00 0.00 3.24
472 508 2.506061 CGGAGCAGGGAGGAGGATG 61.506 68.421 0.00 0.00 0.00 3.51
516 878 7.610305 CCACATTCATTTAGTTGGGTAGTTAGT 59.390 37.037 0.00 0.00 0.00 2.24
522 884 8.677300 TCATTTAGTTGGGTAGTTAGTAGTACG 58.323 37.037 0.00 0.00 32.01 3.67
523 885 7.996098 TTTAGTTGGGTAGTTAGTAGTACGT 57.004 36.000 0.00 0.00 32.01 3.57
740 1102 2.046023 CGGCAGGCATGTTGGAGA 60.046 61.111 0.00 0.00 0.00 3.71
741 1103 2.110967 CGGCAGGCATGTTGGAGAG 61.111 63.158 0.00 0.00 0.00 3.20
788 1150 3.202906 CTCCGTTTCTCACTTTTGTCCA 58.797 45.455 0.00 0.00 0.00 4.02
789 1151 3.611970 TCCGTTTCTCACTTTTGTCCAA 58.388 40.909 0.00 0.00 0.00 3.53
790 1152 3.625764 TCCGTTTCTCACTTTTGTCCAAG 59.374 43.478 0.00 0.00 0.00 3.61
791 1153 3.363178 CGTTTCTCACTTTTGTCCAAGC 58.637 45.455 0.00 0.00 0.00 4.01
792 1154 3.706698 GTTTCTCACTTTTGTCCAAGCC 58.293 45.455 0.00 0.00 0.00 4.35
795 1157 0.260230 TCACTTTTGTCCAAGCCCCA 59.740 50.000 0.00 0.00 0.00 4.96
798 1160 2.104622 CACTTTTGTCCAAGCCCCAAAT 59.895 45.455 0.00 0.00 0.00 2.32
800 1162 3.181455 ACTTTTGTCCAAGCCCCAAATTC 60.181 43.478 0.00 0.00 0.00 2.17
806 1168 0.545071 CAAGCCCCAAATTCCCACCT 60.545 55.000 0.00 0.00 0.00 4.00
818 1180 2.122729 CCACCTCCACCTCTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
821 1193 0.326048 CACCTCCACCTCTCCCATCT 60.326 60.000 0.00 0.00 0.00 2.90
838 1210 4.504858 CCATCTCACTATAAATACCGCCC 58.495 47.826 0.00 0.00 0.00 6.13
839 1211 4.504858 CATCTCACTATAAATACCGCCCC 58.495 47.826 0.00 0.00 0.00 5.80
840 1212 2.559668 TCTCACTATAAATACCGCCCCG 59.440 50.000 0.00 0.00 0.00 5.73
841 1213 2.298163 CTCACTATAAATACCGCCCCGT 59.702 50.000 0.00 0.00 0.00 5.28
842 1214 2.699846 TCACTATAAATACCGCCCCGTT 59.300 45.455 0.00 0.00 0.00 4.44
854 1226 1.374947 CCCCGTTCTCACACCACAT 59.625 57.895 0.00 0.00 0.00 3.21
865 1237 1.301637 CACCACATCGCCTCACACA 60.302 57.895 0.00 0.00 0.00 3.72
866 1238 1.301716 ACCACATCGCCTCACACAC 60.302 57.895 0.00 0.00 0.00 3.82
869 1241 2.436646 CATCGCCTCACACACCCC 60.437 66.667 0.00 0.00 0.00 4.95
870 1242 2.607750 ATCGCCTCACACACCCCT 60.608 61.111 0.00 0.00 0.00 4.79
871 1243 2.660064 ATCGCCTCACACACCCCTC 61.660 63.158 0.00 0.00 0.00 4.30
872 1244 4.742201 CGCCTCACACACCCCTCG 62.742 72.222 0.00 0.00 0.00 4.63
876 1248 2.203640 TCACACACCCCTCGCTCT 60.204 61.111 0.00 0.00 0.00 4.09
879 1251 1.979693 ACACACCCCTCGCTCTCTC 60.980 63.158 0.00 0.00 0.00 3.20
881 1253 2.043450 CACCCCTCGCTCTCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
883 1255 1.380650 ACCCCTCGCTCTCTCCTTC 60.381 63.158 0.00 0.00 0.00 3.46
884 1256 2.131067 CCCCTCGCTCTCTCCTTCC 61.131 68.421 0.00 0.00 0.00 3.46
885 1257 1.076339 CCCTCGCTCTCTCCTTCCT 60.076 63.158 0.00 0.00 0.00 3.36
886 1258 0.686112 CCCTCGCTCTCTCCTTCCTT 60.686 60.000 0.00 0.00 0.00 3.36
887 1259 0.744281 CCTCGCTCTCTCCTTCCTTC 59.256 60.000 0.00 0.00 0.00 3.46
888 1260 1.684869 CCTCGCTCTCTCCTTCCTTCT 60.685 57.143 0.00 0.00 0.00 2.85
889 1261 2.099405 CTCGCTCTCTCCTTCCTTCTT 58.901 52.381 0.00 0.00 0.00 2.52
890 1262 2.096248 TCGCTCTCTCCTTCCTTCTTC 58.904 52.381 0.00 0.00 0.00 2.87
891 1263 1.136110 CGCTCTCTCCTTCCTTCTTCC 59.864 57.143 0.00 0.00 0.00 3.46
892 1264 2.466846 GCTCTCTCCTTCCTTCTTCCT 58.533 52.381 0.00 0.00 0.00 3.36
893 1265 2.430694 GCTCTCTCCTTCCTTCTTCCTC 59.569 54.545 0.00 0.00 0.00 3.71
896 1268 0.827368 CTCCTTCCTTCTTCCTCCCG 59.173 60.000 0.00 0.00 0.00 5.14
901 1273 1.990060 CCTTCTTCCTCCCGCCTCA 60.990 63.158 0.00 0.00 0.00 3.86
903 1275 0.105778 CTTCTTCCTCCCGCCTCATC 59.894 60.000 0.00 0.00 0.00 2.92
920 1292 2.004408 ATCCATCCTCCCCTGCAAGC 62.004 60.000 0.00 0.00 0.00 4.01
925 1297 1.751927 CCTCCCCTGCAAGCACATC 60.752 63.158 0.00 0.00 0.00 3.06
926 1298 1.001764 CTCCCCTGCAAGCACATCA 60.002 57.895 0.00 0.00 0.00 3.07
929 1301 0.968901 CCCCTGCAAGCACATCACAT 60.969 55.000 0.00 0.00 0.00 3.21
930 1302 1.682702 CCCCTGCAAGCACATCACATA 60.683 52.381 0.00 0.00 0.00 2.29
931 1303 1.674441 CCCTGCAAGCACATCACATAG 59.326 52.381 0.00 0.00 0.00 2.23
932 1304 1.065102 CCTGCAAGCACATCACATAGC 59.935 52.381 0.00 0.00 0.00 2.97
933 1305 0.728542 TGCAAGCACATCACATAGCG 59.271 50.000 0.00 0.00 0.00 4.26
934 1306 0.028505 GCAAGCACATCACATAGCGG 59.971 55.000 0.00 0.00 0.00 5.52
935 1307 0.028505 CAAGCACATCACATAGCGGC 59.971 55.000 0.00 0.00 0.00 6.53
936 1308 1.431488 AAGCACATCACATAGCGGCG 61.431 55.000 0.51 0.51 0.00 6.46
937 1309 2.885676 GCACATCACATAGCGGCGG 61.886 63.158 9.78 0.00 0.00 6.13
938 1310 2.588877 ACATCACATAGCGGCGGC 60.589 61.111 9.78 8.43 40.37 6.53
939 1311 3.705638 CATCACATAGCGGCGGCG 61.706 66.667 28.70 28.70 46.35 6.46
958 1337 0.315568 GGCTGCTCGATCGTAAGGAT 59.684 55.000 15.94 0.00 38.35 3.24
959 1338 1.667467 GGCTGCTCGATCGTAAGGATC 60.667 57.143 15.94 2.85 46.70 3.36
975 1354 0.807667 GATCGCATCCACGCAAGAGT 60.808 55.000 0.00 0.00 43.62 3.24
980 1359 1.638133 CATCCACGCAAGAGTGAGAG 58.362 55.000 5.49 0.00 44.43 3.20
983 1362 0.108898 CCACGCAAGAGTGAGAGAGG 60.109 60.000 5.49 0.00 44.43 3.69
984 1363 0.600557 CACGCAAGAGTGAGAGAGGT 59.399 55.000 0.00 0.00 44.43 3.85
1299 1681 1.224315 CCACGGGCATTCCATCAGA 59.776 57.895 0.00 0.00 34.36 3.27
1623 2016 5.107133 GGTACGTACAAACATACATGAGCT 58.893 41.667 26.02 0.00 0.00 4.09
1628 2021 5.519927 CGTACAAACATACATGAGCTCATCA 59.480 40.000 26.44 17.09 43.70 3.07
1629 2022 5.808042 ACAAACATACATGAGCTCATCAC 57.192 39.130 26.44 0.00 41.91 3.06
1630 2023 5.247862 ACAAACATACATGAGCTCATCACA 58.752 37.500 26.44 14.23 41.91 3.58
1643 2036 1.039233 CATCACAATCAGCCACCCCC 61.039 60.000 0.00 0.00 0.00 5.40
1676 2086 1.469251 GGCGTTCTCTTCTCATGCGTA 60.469 52.381 0.00 0.00 0.00 4.42
1678 2088 2.863739 CGTTCTCTTCTCATGCGTACA 58.136 47.619 0.00 0.00 0.00 2.90
1687 2097 4.910956 ATGCGTACATGCGTGACT 57.089 50.000 14.17 0.00 37.81 3.41
1877 2300 2.189521 CACCTCCCCATACGCACC 59.810 66.667 0.00 0.00 0.00 5.01
1915 2338 5.639506 TCTCTTTCTTTCTTTATGCCTGTCG 59.360 40.000 0.00 0.00 0.00 4.35
1937 2360 1.482593 TCTCCTCCTCGCCATTCTTTC 59.517 52.381 0.00 0.00 0.00 2.62
1941 2364 2.421424 CCTCCTCGCCATTCTTTCTTTG 59.579 50.000 0.00 0.00 0.00 2.77
1942 2365 3.077359 CTCCTCGCCATTCTTTCTTTGT 58.923 45.455 0.00 0.00 0.00 2.83
1943 2366 3.486383 TCCTCGCCATTCTTTCTTTGTT 58.514 40.909 0.00 0.00 0.00 2.83
1985 2408 2.765352 CCCACCTGGTCTGAACTCT 58.235 57.895 0.00 0.00 0.00 3.24
1993 2416 2.554462 CTGGTCTGAACTCTGAAGACGA 59.446 50.000 0.00 0.00 41.03 4.20
1997 2420 3.253677 GTCTGAACTCTGAAGACGAAGGA 59.746 47.826 0.00 0.00 31.75 3.36
2031 2454 1.609320 GCGCCTTATCTCCATCCCTTC 60.609 57.143 0.00 0.00 0.00 3.46
2073 2511 2.335011 CGATATGTCGCAGCCCGA 59.665 61.111 0.00 0.00 45.15 5.14
2273 2729 2.356553 CGTTTCACGGGGCTCGAA 60.357 61.111 16.65 0.00 42.43 3.71
2402 2864 6.671616 CGTTCGTTATTAGTAGCGTTTTGAAG 59.328 38.462 1.72 0.00 36.17 3.02
2432 2894 3.092301 CCCATGGAAAAAGTCTTCCTCC 58.908 50.000 15.22 6.11 44.57 4.30
2439 2906 7.906199 TGGAAAAAGTCTTCCTCCAAATTAA 57.094 32.000 11.47 0.00 44.57 1.40
2440 2907 8.312669 TGGAAAAAGTCTTCCTCCAAATTAAA 57.687 30.769 11.47 0.00 44.57 1.52
2441 2908 8.763601 TGGAAAAAGTCTTCCTCCAAATTAAAA 58.236 29.630 11.47 0.00 44.57 1.52
2442 2909 9.778741 GGAAAAAGTCTTCCTCCAAATTAAAAT 57.221 29.630 7.68 0.00 41.56 1.82
2478 2954 1.883732 CGTCTGGTCGATCAGGTGT 59.116 57.895 25.00 0.00 35.58 4.16
2479 2955 0.456824 CGTCTGGTCGATCAGGTGTG 60.457 60.000 25.00 9.10 35.58 3.82
2563 3039 3.761897 CCAATTTGGTGGGTCTTCTACA 58.238 45.455 7.31 0.00 34.77 2.74
2588 3071 1.909376 TGTTTAGCTCACGCGATCTC 58.091 50.000 15.93 0.00 42.32 2.75
2591 3074 1.379527 TTAGCTCACGCGATCTCTCA 58.620 50.000 15.93 0.00 42.32 3.27
2608 3092 8.352201 CGATCTCTCACAAGATTCTATTCTTCT 58.648 37.037 0.00 0.00 36.13 2.85
2610 3094 8.821686 TCTCTCACAAGATTCTATTCTTCTCT 57.178 34.615 0.00 0.00 33.69 3.10
2612 3096 8.586879 TCTCACAAGATTCTATTCTTCTCTGA 57.413 34.615 0.00 0.00 33.69 3.27
2617 3101 8.976353 ACAAGATTCTATTCTTCTCTGAAGCTA 58.024 33.333 2.71 0.00 33.15 3.32
2638 3123 2.126914 ATCAGCTGACTAATCGACGC 57.873 50.000 20.97 0.00 0.00 5.19
2648 3133 5.809464 TGACTAATCGACGCTAATAAACGA 58.191 37.500 0.00 0.00 37.39 3.85
2652 3137 2.187707 TCGACGCTAATAAACGAAGCC 58.812 47.619 0.00 0.00 32.50 4.35
2653 3138 1.921887 CGACGCTAATAAACGAAGCCA 59.078 47.619 0.00 0.00 32.50 4.75
2654 3139 2.284855 CGACGCTAATAAACGAAGCCAC 60.285 50.000 0.00 0.00 32.50 5.01
2674 3159 4.051922 CACGGGTGATCTAAGCTGATTAC 58.948 47.826 0.00 0.00 33.77 1.89
2686 3171 1.202973 CTGATTACGCAGCCTCGTCG 61.203 60.000 4.04 0.00 43.15 5.12
2722 3207 6.206634 CAGCCGGGCTAATTCATTTTCTAATA 59.793 38.462 23.37 0.00 36.40 0.98
2726 3211 7.542130 CCGGGCTAATTCATTTTCTAATAATGC 59.458 37.037 0.00 0.00 33.91 3.56
2735 3220 2.882927 TCTAATAATGCGCACGGTCT 57.117 45.000 14.90 0.00 0.00 3.85
2736 3221 2.739292 TCTAATAATGCGCACGGTCTC 58.261 47.619 14.90 0.00 0.00 3.36
2737 3222 1.452025 CTAATAATGCGCACGGTCTCG 59.548 52.381 14.90 0.00 43.02 4.04
2798 3287 2.029964 GAGTTCACGGCGGACCAA 59.970 61.111 13.24 0.00 34.57 3.67
2924 3413 3.589654 CTTCTCGCCGCAGAACCCA 62.590 63.158 0.00 0.00 0.00 4.51
2972 3461 2.510238 GGCGTGCTCTACTGCCTG 60.510 66.667 0.00 0.00 42.11 4.85
3029 3518 1.153628 CGTTGATCAGGTCCGTCCC 60.154 63.158 0.00 0.00 36.75 4.46
3061 3550 2.438614 CCGCCTCTCTCGACCTCA 60.439 66.667 0.00 0.00 0.00 3.86
3067 3556 2.223852 GCCTCTCTCGACCTCAATTACC 60.224 54.545 0.00 0.00 0.00 2.85
3068 3557 2.033550 CCTCTCTCGACCTCAATTACCG 59.966 54.545 0.00 0.00 0.00 4.02
3069 3558 2.683867 CTCTCTCGACCTCAATTACCGT 59.316 50.000 0.00 0.00 0.00 4.83
3070 3559 3.875727 CTCTCTCGACCTCAATTACCGTA 59.124 47.826 0.00 0.00 0.00 4.02
3071 3560 3.875727 TCTCTCGACCTCAATTACCGTAG 59.124 47.826 0.00 0.00 0.00 3.51
3072 3561 3.614092 TCTCGACCTCAATTACCGTAGT 58.386 45.455 0.00 0.00 0.00 2.73
3073 3562 4.769688 TCTCGACCTCAATTACCGTAGTA 58.230 43.478 0.00 0.00 0.00 1.82
3074 3563 4.572389 TCTCGACCTCAATTACCGTAGTAC 59.428 45.833 0.00 0.00 0.00 2.73
3075 3564 4.260985 TCGACCTCAATTACCGTAGTACA 58.739 43.478 0.38 0.00 0.00 2.90
3076 3565 4.333649 TCGACCTCAATTACCGTAGTACAG 59.666 45.833 0.38 0.00 0.00 2.74
3077 3566 4.357996 GACCTCAATTACCGTAGTACAGC 58.642 47.826 0.38 0.00 0.00 4.40
3154 3910 3.772572 TCCTGGCTTAGTTATGTACTGCA 59.227 43.478 0.00 0.00 37.73 4.41
3155 3911 4.408921 TCCTGGCTTAGTTATGTACTGCAT 59.591 41.667 0.00 0.00 37.73 3.96
3156 3912 4.512944 CCTGGCTTAGTTATGTACTGCATG 59.487 45.833 0.00 0.00 38.47 4.06
3157 3913 3.876914 TGGCTTAGTTATGTACTGCATGC 59.123 43.478 11.82 11.82 38.47 4.06
3210 3966 8.081633 TCATTGGGATATGTTAATTCGCATTTC 58.918 33.333 0.86 3.18 33.15 2.17
3211 3967 6.951062 TGGGATATGTTAATTCGCATTTCA 57.049 33.333 11.61 0.00 0.00 2.69
3220 3976 6.092122 TGTTAATTCGCATTTCAGAGTAGGTG 59.908 38.462 0.00 0.00 0.00 4.00
3232 3991 6.202202 TCAGAGTAGGTGGCACTAGTATAT 57.798 41.667 18.45 0.00 0.00 0.86
3235 3994 4.675038 AGTAGGTGGCACTAGTATATCCC 58.325 47.826 18.45 0.00 0.00 3.85
3246 4005 7.038941 GGCACTAGTATATCCCTGTTGATTAGT 60.039 40.741 0.00 0.00 0.00 2.24
3247 4006 9.021807 GCACTAGTATATCCCTGTTGATTAGTA 57.978 37.037 0.00 0.00 0.00 1.82
3300 4059 4.764823 ACTCGATCTGTAGATCTTCCCATC 59.235 45.833 17.19 0.00 46.58 3.51
3305 4064 4.999310 TCTGTAGATCTTCCCATCCGTAT 58.001 43.478 0.00 0.00 0.00 3.06
3356 4115 3.308866 AGCACGCACTAATTTTATCGACC 59.691 43.478 0.00 0.00 0.00 4.79
3367 4129 3.552604 TTTATCGACCACTTTGCTTGC 57.447 42.857 0.00 0.00 0.00 4.01
3373 4135 3.042887 CGACCACTTTGCTTGCTTTAAC 58.957 45.455 0.00 0.00 0.00 2.01
3377 4139 5.772521 ACCACTTTGCTTGCTTTAACTATG 58.227 37.500 0.00 0.00 0.00 2.23
3379 4141 6.488683 ACCACTTTGCTTGCTTTAACTATGTA 59.511 34.615 0.00 0.00 0.00 2.29
3381 4143 7.485913 CCACTTTGCTTGCTTTAACTATGTATG 59.514 37.037 0.00 0.00 0.00 2.39
3387 4149 9.173021 TGCTTGCTTTAACTATGTATGTGTATT 57.827 29.630 0.00 0.00 0.00 1.89
3401 4163 8.007405 TGTATGTGTATTAGATGTAGTGCACT 57.993 34.615 25.12 25.12 34.08 4.40
3426 4188 2.294233 TGAATTGCCAAGTCTGTGCTTC 59.706 45.455 6.44 0.00 0.00 3.86
3428 4190 1.985473 TTGCCAAGTCTGTGCTTCAT 58.015 45.000 0.00 0.00 0.00 2.57
3462 4233 5.696724 AGATAAAATCGCCGGAGTCTAAATG 59.303 40.000 5.05 0.00 0.00 2.32
3549 4320 1.663702 GTGTTCACGACGGACCTGG 60.664 63.158 0.00 0.00 0.00 4.45
3951 4730 1.527844 GCCTGCATGATCCACCTCC 60.528 63.158 0.00 0.00 0.00 4.30
3952 4731 1.150081 CCTGCATGATCCACCTCCC 59.850 63.158 0.00 0.00 0.00 4.30
3953 4732 1.227764 CTGCATGATCCACCTCCCG 60.228 63.158 0.00 0.00 0.00 5.14
3954 4733 2.592861 GCATGATCCACCTCCCGC 60.593 66.667 0.00 0.00 0.00 6.13
3955 4734 2.111878 CATGATCCACCTCCCGCC 59.888 66.667 0.00 0.00 0.00 6.13
3956 4735 3.171388 ATGATCCACCTCCCGCCC 61.171 66.667 0.00 0.00 0.00 6.13
4285 5073 2.139118 GTGACAGGCTCTGTTCTGAAC 58.861 52.381 13.49 13.49 45.44 3.18
4288 5076 3.641436 TGACAGGCTCTGTTCTGAACTTA 59.359 43.478 20.18 8.32 45.44 2.24
4294 5083 7.173390 ACAGGCTCTGTTCTGAACTTAATAAAC 59.827 37.037 20.18 4.94 42.59 2.01
4295 5084 7.389053 CAGGCTCTGTTCTGAACTTAATAAACT 59.611 37.037 20.18 6.83 33.11 2.66
4301 5090 7.741785 TGTTCTGAACTTAATAAACTCTCCCA 58.258 34.615 20.18 0.00 0.00 4.37
4476 5281 2.927477 TGTCGCTTTCCTATGCTTAACG 59.073 45.455 0.00 0.00 0.00 3.18
4555 5368 3.339141 CTTTTCCTAGTCTGCTCCAACC 58.661 50.000 0.00 0.00 0.00 3.77
4813 5627 1.152777 CCTGCCCAACCACAAGTCA 60.153 57.895 0.00 0.00 0.00 3.41
4982 5799 3.531934 TGCCTGTCATGACATGTAGAG 57.468 47.619 28.00 15.20 41.01 2.43
4989 5806 4.708909 TGTCATGACATGTAGAGAGAGCTT 59.291 41.667 24.56 0.00 36.21 3.74
4990 5807 5.888161 TGTCATGACATGTAGAGAGAGCTTA 59.112 40.000 24.56 0.00 36.21 3.09
4996 5813 6.488344 TGACATGTAGAGAGAGCTTATGTAGG 59.512 42.308 0.00 0.00 30.02 3.18
5013 5830 4.914983 TGTAGGTAGCTAGGCGTATGTAT 58.085 43.478 0.86 0.00 0.00 2.29
5017 5834 4.699257 AGGTAGCTAGGCGTATGTATGTAC 59.301 45.833 0.00 0.00 0.00 2.90
5021 5838 4.940046 AGCTAGGCGTATGTATGTACGTAT 59.060 41.667 0.00 0.00 46.74 3.06
5022 5839 5.026462 GCTAGGCGTATGTATGTACGTATG 58.974 45.833 0.00 7.09 46.74 2.39
5024 5841 6.183360 GCTAGGCGTATGTATGTACGTATGTA 60.183 42.308 0.00 0.00 46.74 2.29
5025 5842 6.558771 AGGCGTATGTATGTACGTATGTAA 57.441 37.500 0.00 0.00 46.74 2.41
5026 5843 7.149569 AGGCGTATGTATGTACGTATGTAAT 57.850 36.000 0.00 0.00 46.74 1.89
5027 5844 7.596494 AGGCGTATGTATGTACGTATGTAATT 58.404 34.615 0.00 0.00 46.74 1.40
5028 5845 7.539710 AGGCGTATGTATGTACGTATGTAATTG 59.460 37.037 0.00 0.00 46.74 2.32
5029 5846 7.201376 GGCGTATGTATGTACGTATGTAATTGG 60.201 40.741 0.00 0.00 46.74 3.16
5030 5847 7.201376 GCGTATGTATGTACGTATGTAATTGGG 60.201 40.741 0.00 0.00 46.74 4.12
5054 5871 2.695666 TCACAGAGCAGGATTAGGTAGC 59.304 50.000 0.00 0.00 0.00 3.58
5070 5887 4.924625 AGGTAGCGTGGAGATGTATAGAT 58.075 43.478 0.00 0.00 0.00 1.98
5072 5889 4.459685 GGTAGCGTGGAGATGTATAGATGT 59.540 45.833 0.00 0.00 0.00 3.06
5073 5890 5.646793 GGTAGCGTGGAGATGTATAGATGTA 59.353 44.000 0.00 0.00 0.00 2.29
5074 5891 5.630661 AGCGTGGAGATGTATAGATGTAC 57.369 43.478 0.00 0.00 0.00 2.90
5076 5893 5.413213 AGCGTGGAGATGTATAGATGTACTC 59.587 44.000 0.00 0.00 0.00 2.59
5077 5894 5.413213 GCGTGGAGATGTATAGATGTACTCT 59.587 44.000 0.00 0.00 38.06 3.24
5078 5895 6.594547 GCGTGGAGATGTATAGATGTACTCTA 59.405 42.308 0.00 0.00 40.73 2.43
5079 5896 7.413219 GCGTGGAGATGTATAGATGTACTCTAC 60.413 44.444 0.00 0.00 39.28 2.59
5080 5897 7.820386 CGTGGAGATGTATAGATGTACTCTACT 59.180 40.741 0.00 0.00 39.28 2.57
5081 5898 9.158233 GTGGAGATGTATAGATGTACTCTACTC 57.842 40.741 0.00 0.00 39.28 2.59
5154 6007 5.354234 GGTTGGTTATGTAACATCTCTGTGG 59.646 44.000 5.38 0.00 37.92 4.17
5156 6009 5.487433 TGGTTATGTAACATCTCTGTGGTG 58.513 41.667 5.38 0.00 37.92 4.17
5157 6010 5.012664 TGGTTATGTAACATCTCTGTGGTGT 59.987 40.000 5.38 0.00 37.92 4.16
5197 6052 7.930513 AAAACAATTTTCGATCTCCAGTTTC 57.069 32.000 0.00 0.00 0.00 2.78
5199 6054 6.487689 ACAATTTTCGATCTCCAGTTTCTC 57.512 37.500 0.00 0.00 0.00 2.87
5200 6055 5.997746 ACAATTTTCGATCTCCAGTTTCTCA 59.002 36.000 0.00 0.00 0.00 3.27
5201 6056 6.073003 ACAATTTTCGATCTCCAGTTTCTCAC 60.073 38.462 0.00 0.00 0.00 3.51
5202 6057 4.873746 TTTCGATCTCCAGTTTCTCACT 57.126 40.909 0.00 0.00 35.35 3.41
5203 6058 4.873746 TTCGATCTCCAGTTTCTCACTT 57.126 40.909 0.00 0.00 30.92 3.16
5205 6060 3.119814 TCGATCTCCAGTTTCTCACTTCG 60.120 47.826 0.00 0.00 33.69 3.79
5208 6063 4.500603 TCTCCAGTTTCTCACTTCGTAC 57.499 45.455 0.00 0.00 30.92 3.67
5210 6065 4.583489 TCTCCAGTTTCTCACTTCGTACTT 59.417 41.667 0.00 0.00 30.92 2.24
5211 6066 4.868067 TCCAGTTTCTCACTTCGTACTTC 58.132 43.478 0.00 0.00 30.92 3.01
5212 6067 4.583489 TCCAGTTTCTCACTTCGTACTTCT 59.417 41.667 0.00 0.00 30.92 2.85
5213 6068 5.068723 TCCAGTTTCTCACTTCGTACTTCTT 59.931 40.000 0.00 0.00 30.92 2.52
5214 6069 5.402867 CCAGTTTCTCACTTCGTACTTCTTC 59.597 44.000 0.00 0.00 30.92 2.87
5215 6070 5.977725 CAGTTTCTCACTTCGTACTTCTTCA 59.022 40.000 0.00 0.00 30.92 3.02
5216 6071 6.642950 CAGTTTCTCACTTCGTACTTCTTCAT 59.357 38.462 0.00 0.00 30.92 2.57
5225 6080 3.376234 TCGTACTTCTTCATCCTACGGTG 59.624 47.826 0.00 0.00 32.82 4.94
5255 6117 3.127099 CCATGGATTGGCAGCATCT 57.873 52.632 5.56 0.00 39.09 2.90
5260 6122 2.923121 TGGATTGGCAGCATCTTAGAC 58.077 47.619 0.00 0.00 0.00 2.59
5342 6240 8.865090 AGAAACAGGGTATATCTTCTCTGTATG 58.135 37.037 7.95 0.00 34.82 2.39
5361 6259 1.082690 GCTCCAACAAGCAGAGCTAC 58.917 55.000 4.05 0.00 42.05 3.58
5362 6260 1.731720 CTCCAACAAGCAGAGCTACC 58.268 55.000 0.00 0.00 38.25 3.18
5363 6261 1.002430 CTCCAACAAGCAGAGCTACCA 59.998 52.381 0.00 0.00 38.25 3.25
5364 6262 1.160137 CCAACAAGCAGAGCTACCAC 58.840 55.000 0.00 0.00 38.25 4.16
5376 6289 1.301716 CTACCACGCAGCCACAAGT 60.302 57.895 0.00 0.00 0.00 3.16
5471 6395 5.626211 TGACGTAATTAACACGACGATGTA 58.374 37.500 16.02 0.00 41.91 2.29
5472 6396 6.082984 TGACGTAATTAACACGACGATGTAA 58.917 36.000 16.02 0.00 41.91 2.41
5473 6397 6.746822 TGACGTAATTAACACGACGATGTAAT 59.253 34.615 16.02 0.00 41.91 1.89
5506 6430 2.268762 TGTGCATGCACCAGACTAAA 57.731 45.000 40.01 21.41 45.63 1.85
5514 6438 5.720202 CATGCACCAGACTAAACTGTACTA 58.280 41.667 0.00 0.00 36.30 1.82
5525 6449 7.121020 AGACTAAACTGTACTACCTGTCTTAGC 59.879 40.741 0.00 0.00 0.00 3.09
5548 6874 5.122396 GCAAGTAAGCAAAGCTGTACTACAT 59.878 40.000 11.44 0.00 39.62 2.29
5593 6919 5.892119 AGTACAGAACTTCCCGAGATAATGA 59.108 40.000 0.00 0.00 33.35 2.57
5637 6974 4.953868 CACCGGCCGACGTGTTGA 62.954 66.667 30.73 0.00 42.24 3.18
5656 6994 3.000041 TGATGCAACGTATCACTTGGTC 59.000 45.455 0.00 0.00 30.03 4.02
5657 6995 2.831685 TGCAACGTATCACTTGGTCT 57.168 45.000 0.00 0.00 0.00 3.85
5658 6996 2.412870 TGCAACGTATCACTTGGTCTG 58.587 47.619 0.00 0.00 0.00 3.51
5659 6997 2.224185 TGCAACGTATCACTTGGTCTGT 60.224 45.455 0.00 0.00 0.00 3.41
5660 6998 2.806244 GCAACGTATCACTTGGTCTGTT 59.194 45.455 0.00 0.00 0.00 3.16
5661 6999 3.363970 GCAACGTATCACTTGGTCTGTTG 60.364 47.826 0.00 0.00 38.68 3.33
5662 7000 3.040147 ACGTATCACTTGGTCTGTTGG 57.960 47.619 0.00 0.00 0.00 3.77
5663 7001 2.367567 ACGTATCACTTGGTCTGTTGGT 59.632 45.455 0.00 0.00 0.00 3.67
5676 7014 3.755378 GTCTGTTGGTCAATCAATCAGCT 59.245 43.478 0.00 0.00 31.85 4.24
5704 7042 4.474846 CAAAATCCGTGGGCCGCG 62.475 66.667 31.51 31.51 37.10 6.46
5716 7054 2.583593 GCCGCGGAGACAGATGTC 60.584 66.667 33.48 2.06 45.08 3.06
5721 7059 2.105128 GGAGACAGATGTCCGCCG 59.895 66.667 9.31 0.00 45.85 6.46
5754 7092 4.961511 TGGCACACGGAGACACGC 62.962 66.667 0.00 0.00 37.37 5.34
5832 7173 3.501019 CCATTGGAGGGGAATAATGGGAG 60.501 52.174 0.00 0.00 43.59 4.30
5892 7233 0.868406 GACAAGGACGACTTTGGCAG 59.132 55.000 10.51 0.00 40.25 4.85
5893 7234 1.166531 ACAAGGACGACTTTGGCAGC 61.167 55.000 13.55 0.00 37.29 5.25
5894 7235 1.148273 AAGGACGACTTTGGCAGCA 59.852 52.632 0.00 0.00 35.35 4.41
5895 7236 0.465460 AAGGACGACTTTGGCAGCAA 60.465 50.000 0.00 0.00 35.35 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 102 2.926901 TACGCCACACCACACCACAC 62.927 60.000 0.00 0.00 0.00 3.82
98 103 2.732619 TACGCCACACCACACCACA 61.733 57.895 0.00 0.00 0.00 4.17
99 104 2.109387 TACGCCACACCACACCAC 59.891 61.111 0.00 0.00 0.00 4.16
100 105 1.973816 AAGTACGCCACACCACACCA 61.974 55.000 0.00 0.00 0.00 4.17
101 106 0.816421 AAAGTACGCCACACCACACC 60.816 55.000 0.00 0.00 0.00 4.16
113 128 0.459063 GACACCCCGCCTAAAGTACG 60.459 60.000 0.00 0.00 0.00 3.67
137 152 6.785076 TCCAAATTCCCAATCAACACTACTA 58.215 36.000 0.00 0.00 0.00 1.82
138 153 5.640147 TCCAAATTCCCAATCAACACTACT 58.360 37.500 0.00 0.00 0.00 2.57
140 155 5.048364 CGTTCCAAATTCCCAATCAACACTA 60.048 40.000 0.00 0.00 0.00 2.74
153 171 0.598065 AGCAGCACCGTTCCAAATTC 59.402 50.000 0.00 0.00 0.00 2.17
182 200 4.096833 TGCATGCAGATGGTGAGAATTTAC 59.903 41.667 18.46 0.00 0.00 2.01
183 201 4.271661 TGCATGCAGATGGTGAGAATTTA 58.728 39.130 18.46 0.00 0.00 1.40
184 202 3.093814 TGCATGCAGATGGTGAGAATTT 58.906 40.909 18.46 0.00 0.00 1.82
185 203 2.730382 TGCATGCAGATGGTGAGAATT 58.270 42.857 18.46 0.00 0.00 2.17
213 237 3.341043 CAATCCCATCGCGGCTCG 61.341 66.667 6.13 0.00 40.15 5.03
218 242 1.493950 GCACTCTCAATCCCATCGCG 61.494 60.000 0.00 0.00 0.00 5.87
264 289 2.749621 CCAAAAGAAAGACGATCCCCTG 59.250 50.000 0.00 0.00 0.00 4.45
467 503 1.568504 TCGAACAGGTAAGCCATCCT 58.431 50.000 0.00 0.00 37.19 3.24
468 504 2.103263 AGATCGAACAGGTAAGCCATCC 59.897 50.000 0.00 0.00 37.19 3.51
470 506 2.103263 GGAGATCGAACAGGTAAGCCAT 59.897 50.000 0.00 0.00 37.19 4.40
471 507 1.480954 GGAGATCGAACAGGTAAGCCA 59.519 52.381 0.00 0.00 37.19 4.75
472 508 1.480954 TGGAGATCGAACAGGTAAGCC 59.519 52.381 0.00 0.00 0.00 4.35
516 878 4.861462 CAGACTCAACTCTCGTACGTACTA 59.139 45.833 22.55 11.76 0.00 1.82
522 884 2.226912 AGCACAGACTCAACTCTCGTAC 59.773 50.000 0.00 0.00 0.00 3.67
523 885 2.226674 CAGCACAGACTCAACTCTCGTA 59.773 50.000 0.00 0.00 0.00 3.43
722 1084 3.818787 CTCCAACATGCCTGCCGC 61.819 66.667 0.00 0.00 38.31 6.53
723 1085 2.046023 TCTCCAACATGCCTGCCG 60.046 61.111 0.00 0.00 0.00 5.69
740 1102 2.637872 CGAGGAGGATAGGAGAGAGACT 59.362 54.545 0.00 0.00 0.00 3.24
741 1103 2.290071 CCGAGGAGGATAGGAGAGAGAC 60.290 59.091 0.00 0.00 45.00 3.36
788 1150 0.252239 GAGGTGGGAATTTGGGGCTT 60.252 55.000 0.00 0.00 0.00 4.35
789 1151 1.388133 GAGGTGGGAATTTGGGGCT 59.612 57.895 0.00 0.00 0.00 5.19
790 1152 1.685765 GGAGGTGGGAATTTGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
791 1153 0.614697 GTGGAGGTGGGAATTTGGGG 60.615 60.000 0.00 0.00 0.00 4.96
792 1154 0.614697 GGTGGAGGTGGGAATTTGGG 60.615 60.000 0.00 0.00 0.00 4.12
795 1157 1.636003 GAGAGGTGGAGGTGGGAATTT 59.364 52.381 0.00 0.00 0.00 1.82
798 1160 1.229529 GGAGAGGTGGAGGTGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
800 1162 2.689034 GGGAGAGGTGGAGGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
806 1168 0.712979 AGTGAGATGGGAGAGGTGGA 59.287 55.000 0.00 0.00 0.00 4.02
818 1180 3.194968 CGGGGCGGTATTTATAGTGAGAT 59.805 47.826 0.00 0.00 0.00 2.75
821 1193 2.318908 ACGGGGCGGTATTTATAGTGA 58.681 47.619 0.00 0.00 0.00 3.41
838 1210 1.626654 GCGATGTGGTGTGAGAACGG 61.627 60.000 0.00 0.00 0.00 4.44
839 1211 1.626654 GGCGATGTGGTGTGAGAACG 61.627 60.000 0.00 0.00 0.00 3.95
840 1212 0.320771 AGGCGATGTGGTGTGAGAAC 60.321 55.000 0.00 0.00 0.00 3.01
841 1213 0.037326 GAGGCGATGTGGTGTGAGAA 60.037 55.000 0.00 0.00 0.00 2.87
842 1214 1.184970 TGAGGCGATGTGGTGTGAGA 61.185 55.000 0.00 0.00 0.00 3.27
854 1226 3.311110 GAGGGGTGTGTGAGGCGA 61.311 66.667 0.00 0.00 0.00 5.54
865 1237 1.380650 GAAGGAGAGAGCGAGGGGT 60.381 63.158 0.00 0.00 0.00 4.95
866 1238 2.131067 GGAAGGAGAGAGCGAGGGG 61.131 68.421 0.00 0.00 0.00 4.79
869 1241 1.762708 AGAAGGAAGGAGAGAGCGAG 58.237 55.000 0.00 0.00 0.00 5.03
870 1242 2.096248 GAAGAAGGAAGGAGAGAGCGA 58.904 52.381 0.00 0.00 0.00 4.93
871 1243 1.136110 GGAAGAAGGAAGGAGAGAGCG 59.864 57.143 0.00 0.00 0.00 5.03
872 1244 2.430694 GAGGAAGAAGGAAGGAGAGAGC 59.569 54.545 0.00 0.00 0.00 4.09
873 1245 3.031013 GGAGGAAGAAGGAAGGAGAGAG 58.969 54.545 0.00 0.00 0.00 3.20
876 1248 1.619977 CGGGAGGAAGAAGGAAGGAGA 60.620 57.143 0.00 0.00 0.00 3.71
879 1251 1.222113 GCGGGAGGAAGAAGGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
881 1253 1.229529 AGGCGGGAGGAAGAAGGAA 60.230 57.895 0.00 0.00 0.00 3.36
883 1255 1.341156 ATGAGGCGGGAGGAAGAAGG 61.341 60.000 0.00 0.00 0.00 3.46
884 1256 0.105778 GATGAGGCGGGAGGAAGAAG 59.894 60.000 0.00 0.00 0.00 2.85
885 1257 1.338136 GGATGAGGCGGGAGGAAGAA 61.338 60.000 0.00 0.00 0.00 2.52
886 1258 1.762460 GGATGAGGCGGGAGGAAGA 60.762 63.158 0.00 0.00 0.00 2.87
887 1259 1.414061 ATGGATGAGGCGGGAGGAAG 61.414 60.000 0.00 0.00 0.00 3.46
888 1260 1.384502 ATGGATGAGGCGGGAGGAA 60.385 57.895 0.00 0.00 0.00 3.36
889 1261 1.838846 GATGGATGAGGCGGGAGGA 60.839 63.158 0.00 0.00 0.00 3.71
890 1262 2.746359 GATGGATGAGGCGGGAGG 59.254 66.667 0.00 0.00 0.00 4.30
891 1263 1.825281 GAGGATGGATGAGGCGGGAG 61.825 65.000 0.00 0.00 0.00 4.30
892 1264 1.838846 GAGGATGGATGAGGCGGGA 60.839 63.158 0.00 0.00 0.00 5.14
893 1265 2.746359 GAGGATGGATGAGGCGGG 59.254 66.667 0.00 0.00 0.00 6.13
896 1268 1.463018 AGGGGAGGATGGATGAGGC 60.463 63.158 0.00 0.00 0.00 4.70
901 1273 2.004408 GCTTGCAGGGGAGGATGGAT 62.004 60.000 0.00 0.00 0.00 3.41
903 1275 2.123982 GCTTGCAGGGGAGGATGG 60.124 66.667 0.00 0.00 0.00 3.51
920 1292 2.885676 GCCGCCGCTATGTGATGTG 61.886 63.158 0.00 0.00 0.00 3.21
936 1308 3.768185 TTACGATCGAGCAGCCGCC 62.768 63.158 24.34 0.00 39.83 6.13
937 1309 2.278596 TTACGATCGAGCAGCCGC 60.279 61.111 24.34 0.00 38.99 6.53
938 1310 1.658717 CCTTACGATCGAGCAGCCG 60.659 63.158 24.34 2.49 0.00 5.52
939 1311 0.315568 ATCCTTACGATCGAGCAGCC 59.684 55.000 24.34 0.00 0.00 4.85
958 1337 1.737735 CACTCTTGCGTGGATGCGA 60.738 57.895 0.00 0.00 37.81 5.10
959 1338 1.690283 CTCACTCTTGCGTGGATGCG 61.690 60.000 0.00 0.00 37.81 4.73
960 1339 0.390340 TCTCACTCTTGCGTGGATGC 60.390 55.000 0.00 0.00 35.63 3.91
963 1342 0.884514 CTCTCTCACTCTTGCGTGGA 59.115 55.000 0.00 0.00 35.63 4.02
964 1343 0.108898 CCTCTCTCACTCTTGCGTGG 60.109 60.000 0.00 0.00 35.63 4.94
965 1344 0.600557 ACCTCTCTCACTCTTGCGTG 59.399 55.000 0.00 0.00 36.25 5.34
967 1346 2.096819 GTCTACCTCTCTCACTCTTGCG 59.903 54.545 0.00 0.00 0.00 4.85
968 1347 3.085533 TGTCTACCTCTCTCACTCTTGC 58.914 50.000 0.00 0.00 0.00 4.01
970 1349 4.534500 TCTCTGTCTACCTCTCTCACTCTT 59.466 45.833 0.00 0.00 0.00 2.85
972 1351 4.081087 ACTCTCTGTCTACCTCTCTCACTC 60.081 50.000 0.00 0.00 0.00 3.51
975 1354 3.054728 CCACTCTCTGTCTACCTCTCTCA 60.055 52.174 0.00 0.00 0.00 3.27
980 1359 1.840737 TGCCACTCTCTGTCTACCTC 58.159 55.000 0.00 0.00 0.00 3.85
983 1362 2.898705 CCATTGCCACTCTCTGTCTAC 58.101 52.381 0.00 0.00 0.00 2.59
984 1363 1.208052 GCCATTGCCACTCTCTGTCTA 59.792 52.381 0.00 0.00 0.00 2.59
1425 1807 1.213013 GAGCACGTCGATCCACAGT 59.787 57.895 0.00 0.00 0.00 3.55
1482 1864 1.212441 AGGTAGAGGTAGTCCGTCCAG 59.788 57.143 0.00 0.00 39.05 3.86
1623 2016 0.034186 GGGGTGGCTGATTGTGATGA 60.034 55.000 0.00 0.00 0.00 2.92
1628 2021 2.616458 GGAGGGGGTGGCTGATTGT 61.616 63.158 0.00 0.00 0.00 2.71
1629 2022 2.276740 GGAGGGGGTGGCTGATTG 59.723 66.667 0.00 0.00 0.00 2.67
1630 2023 3.411517 CGGAGGGGGTGGCTGATT 61.412 66.667 0.00 0.00 0.00 2.57
1676 2086 2.736719 GCAGATCAGTAGTCACGCATGT 60.737 50.000 0.00 0.00 0.00 3.21
1678 2088 1.753649 AGCAGATCAGTAGTCACGCAT 59.246 47.619 0.00 0.00 0.00 4.73
1681 2091 1.923204 GCAAGCAGATCAGTAGTCACG 59.077 52.381 0.00 0.00 0.00 4.35
1682 2092 2.928757 CTGCAAGCAGATCAGTAGTCAC 59.071 50.000 16.75 0.00 46.30 3.67
1683 2093 2.093816 CCTGCAAGCAGATCAGTAGTCA 60.094 50.000 22.76 0.00 46.30 3.41
1684 2094 2.548875 CCTGCAAGCAGATCAGTAGTC 58.451 52.381 22.76 0.00 46.30 2.59
1685 2095 1.209019 CCCTGCAAGCAGATCAGTAGT 59.791 52.381 22.76 0.00 46.30 2.73
1686 2096 1.483827 TCCCTGCAAGCAGATCAGTAG 59.516 52.381 22.76 4.62 46.30 2.57
1687 2097 1.571955 TCCCTGCAAGCAGATCAGTA 58.428 50.000 22.76 0.00 46.30 2.74
1856 2276 0.616395 TGCGTATGGGGAGGTGAGAA 60.616 55.000 0.00 0.00 0.00 2.87
1857 2277 1.001120 TGCGTATGGGGAGGTGAGA 59.999 57.895 0.00 0.00 0.00 3.27
1877 2300 7.611079 AGAAAGAAAGAGAGAAAGGATTGATGG 59.389 37.037 0.00 0.00 0.00 3.51
1915 2338 1.068921 GAATGGCGAGGAGGAGAGC 59.931 63.158 0.00 0.00 0.00 4.09
1937 2360 4.764940 ACGAACGAACGGATTAAACAAAG 58.235 39.130 0.14 0.00 37.61 2.77
1941 2364 3.121362 ACGAACGAACGAACGGATTAAAC 60.121 43.478 11.97 0.00 37.61 2.01
1942 2365 3.049206 ACGAACGAACGAACGGATTAAA 58.951 40.909 11.97 0.00 37.61 1.52
1943 2366 2.660490 ACGAACGAACGAACGGATTAA 58.340 42.857 11.97 0.00 37.61 1.40
1980 2403 3.231818 TCCTTCCTTCGTCTTCAGAGTT 58.768 45.455 0.00 0.00 0.00 3.01
1982 2405 3.944055 TTCCTTCCTTCGTCTTCAGAG 57.056 47.619 0.00 0.00 0.00 3.35
1983 2406 5.894393 AGATATTCCTTCCTTCGTCTTCAGA 59.106 40.000 0.00 0.00 0.00 3.27
1984 2407 6.155475 AGATATTCCTTCCTTCGTCTTCAG 57.845 41.667 0.00 0.00 0.00 3.02
1985 2408 5.221067 CGAGATATTCCTTCCTTCGTCTTCA 60.221 44.000 0.00 0.00 0.00 3.02
1993 2416 2.803492 GCGCACGAGATATTCCTTCCTT 60.803 50.000 0.30 0.00 0.00 3.36
1997 2420 0.753262 AGGCGCACGAGATATTCCTT 59.247 50.000 10.83 0.00 0.00 3.36
2129 2575 4.875713 AATGGATGTCGCCCGCCC 62.876 66.667 0.00 0.00 0.00 6.13
2130 2576 2.828549 AAATGGATGTCGCCCGCC 60.829 61.111 0.00 0.00 0.00 6.13
2131 2577 2.715624 GAAATGGATGTCGCCCGC 59.284 61.111 0.00 0.00 0.00 6.13
2132 2578 0.819259 ATGGAAATGGATGTCGCCCG 60.819 55.000 0.00 0.00 0.00 6.13
2133 2579 1.067516 CAATGGAAATGGATGTCGCCC 59.932 52.381 0.00 0.00 0.00 6.13
2439 2906 9.289303 CAGACGCACAAGCTAATATTTAAATTT 57.711 29.630 5.91 0.00 39.10 1.82
2440 2907 7.915397 CCAGACGCACAAGCTAATATTTAAATT 59.085 33.333 5.91 0.00 39.10 1.82
2441 2908 7.067008 ACCAGACGCACAAGCTAATATTTAAAT 59.933 33.333 5.89 5.89 39.10 1.40
2442 2909 6.373216 ACCAGACGCACAAGCTAATATTTAAA 59.627 34.615 0.00 0.00 39.10 1.52
2443 2910 5.878116 ACCAGACGCACAAGCTAATATTTAA 59.122 36.000 0.00 0.00 39.10 1.52
2444 2911 5.424757 ACCAGACGCACAAGCTAATATTTA 58.575 37.500 0.00 0.00 39.10 1.40
2588 3071 9.304731 CTTCAGAGAAGAATAGAATCTTGTGAG 57.695 37.037 0.52 0.00 39.70 3.51
2591 3074 7.850193 AGCTTCAGAGAAGAATAGAATCTTGT 58.150 34.615 10.72 0.00 39.70 3.16
2617 3101 2.860735 GCGTCGATTAGTCAGCTGATTT 59.139 45.455 21.47 13.93 0.00 2.17
2621 3105 2.757686 TAGCGTCGATTAGTCAGCTG 57.242 50.000 7.63 7.63 36.30 4.24
2631 3115 2.793232 GGCTTCGTTTATTAGCGTCGAT 59.207 45.455 0.00 0.00 35.77 3.59
2633 3117 1.921887 TGGCTTCGTTTATTAGCGTCG 59.078 47.619 0.00 0.00 35.77 5.12
2634 3118 2.284855 CGTGGCTTCGTTTATTAGCGTC 60.285 50.000 0.00 0.00 35.77 5.19
2638 3123 2.350498 CACCCGTGGCTTCGTTTATTAG 59.650 50.000 2.67 0.00 0.00 1.73
2648 3133 0.107654 GCTTAGATCACCCGTGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
2652 3137 2.898729 ATCAGCTTAGATCACCCGTG 57.101 50.000 0.00 0.00 0.00 4.94
2653 3138 3.243434 CGTAATCAGCTTAGATCACCCGT 60.243 47.826 0.00 0.00 0.00 5.28
2654 3139 3.309388 CGTAATCAGCTTAGATCACCCG 58.691 50.000 0.00 0.00 0.00 5.28
2696 3181 1.402787 AAATGAATTAGCCCGGCTGG 58.597 50.000 22.95 3.88 40.10 4.85
2697 3182 2.689983 AGAAAATGAATTAGCCCGGCTG 59.310 45.455 22.95 0.00 40.10 4.85
2698 3183 3.018423 AGAAAATGAATTAGCCCGGCT 57.982 42.857 18.05 18.05 43.41 5.52
2702 3187 7.062255 GCGCATTATTAGAAAATGAATTAGCCC 59.938 37.037 0.30 0.00 36.61 5.19
2703 3188 7.594758 TGCGCATTATTAGAAAATGAATTAGCC 59.405 33.333 5.66 0.00 36.61 3.93
2798 3287 2.042537 TGGGAGATGAGCCGCTCT 60.043 61.111 20.87 6.97 0.00 4.09
2924 3413 1.215117 GAGCGAGCTGAGCTTCACT 59.785 57.895 9.00 6.46 46.13 3.41
2972 3461 1.891150 TCGTAGTTCTTGGTGACCTCC 59.109 52.381 2.11 0.00 0.00 4.30
3057 3546 4.110482 GTGCTGTACTACGGTAATTGAGG 58.890 47.826 0.00 0.00 0.00 3.86
3059 3548 3.427909 CGGTGCTGTACTACGGTAATTGA 60.428 47.826 0.00 0.00 0.00 2.57
3061 3550 2.736400 GCGGTGCTGTACTACGGTAATT 60.736 50.000 0.00 0.00 0.00 1.40
3067 3556 0.921347 GAATGCGGTGCTGTACTACG 59.079 55.000 0.00 0.00 0.00 3.51
3068 3557 2.159226 AGAGAATGCGGTGCTGTACTAC 60.159 50.000 0.00 0.00 0.00 2.73
3069 3558 2.099263 GAGAGAATGCGGTGCTGTACTA 59.901 50.000 0.00 0.00 0.00 1.82
3070 3559 0.898320 AGAGAATGCGGTGCTGTACT 59.102 50.000 0.00 0.00 0.00 2.73
3071 3560 1.281899 GAGAGAATGCGGTGCTGTAC 58.718 55.000 0.00 0.00 0.00 2.90
3072 3561 0.175760 GGAGAGAATGCGGTGCTGTA 59.824 55.000 0.00 0.00 0.00 2.74
3073 3562 1.078848 GGAGAGAATGCGGTGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
3074 3563 1.088340 CAGGAGAGAATGCGGTGCTG 61.088 60.000 0.00 0.00 0.00 4.41
3075 3564 1.220206 CAGGAGAGAATGCGGTGCT 59.780 57.895 0.00 0.00 0.00 4.40
3076 3565 1.817099 CCAGGAGAGAATGCGGTGC 60.817 63.158 0.00 0.00 0.00 5.01
3077 3566 1.817099 GCCAGGAGAGAATGCGGTG 60.817 63.158 0.00 0.00 0.00 4.94
3154 3910 4.575973 GGCCCCGATCAGCAGCAT 62.576 66.667 0.00 0.00 0.00 3.79
3157 3913 4.559063 CAGGGCCCCGATCAGCAG 62.559 72.222 21.43 0.00 0.00 4.24
3210 3966 5.416326 GGATATACTAGTGCCACCTACTCTG 59.584 48.000 5.39 0.00 0.00 3.35
3211 3967 5.516945 GGGATATACTAGTGCCACCTACTCT 60.517 48.000 5.39 0.00 0.00 3.24
3220 3976 5.746990 ATCAACAGGGATATACTAGTGCC 57.253 43.478 5.39 1.57 0.00 5.01
3232 3991 9.035890 CCATCATATAGTACTAATCAACAGGGA 57.964 37.037 6.70 0.00 0.00 4.20
3235 3994 9.144747 GTGCCATCATATAGTACTAATCAACAG 57.855 37.037 6.70 0.00 0.00 3.16
3246 4005 4.565444 GCATGTGGGTGCCATCATATAGTA 60.565 45.833 0.00 0.00 39.18 1.82
3247 4006 3.811810 GCATGTGGGTGCCATCATATAGT 60.812 47.826 0.00 0.00 39.18 2.12
3248 4007 2.751259 GCATGTGGGTGCCATCATATAG 59.249 50.000 0.00 0.00 39.18 1.31
3300 4059 5.048643 ACGGAATTGAGATCTAGTGATACGG 60.049 44.000 0.00 0.00 32.19 4.02
3305 4064 5.505819 CGCTAACGGAATTGAGATCTAGTGA 60.506 44.000 0.00 0.00 34.97 3.41
3356 4115 8.023128 ACATACATAGTTAAAGCAAGCAAAGTG 58.977 33.333 0.00 0.00 0.00 3.16
3377 4139 9.961265 TTAGTGCACTACATCTAATACACATAC 57.039 33.333 26.02 0.00 0.00 2.39
3381 4143 9.529325 TCAATTAGTGCACTACATCTAATACAC 57.471 33.333 26.02 0.00 34.40 2.90
3387 4149 7.012327 GGCAATTCAATTAGTGCACTACATCTA 59.988 37.037 26.02 11.78 38.78 1.98
3388 4150 6.183360 GGCAATTCAATTAGTGCACTACATCT 60.183 38.462 26.02 8.64 38.78 2.90
3401 4163 4.523943 AGCACAGACTTGGCAATTCAATTA 59.476 37.500 18.25 0.00 0.00 1.40
3441 4212 4.124238 CCATTTAGACTCCGGCGATTTTA 58.876 43.478 9.30 0.00 0.00 1.52
3449 4220 1.656652 CAGCACCATTTAGACTCCGG 58.343 55.000 0.00 0.00 0.00 5.14
3451 4222 2.789409 ACCAGCACCATTTAGACTCC 57.211 50.000 0.00 0.00 0.00 3.85
3452 4223 7.499232 ACATAATTACCAGCACCATTTAGACTC 59.501 37.037 0.00 0.00 0.00 3.36
3462 4233 4.815269 TGCAAAACATAATTACCAGCACC 58.185 39.130 0.00 0.00 0.00 5.01
3549 4320 1.445582 CCAGGAAGTCCACGTACGC 60.446 63.158 16.72 0.00 38.89 4.42
3765 4540 1.886542 GCAAAGTGAAGGGTAGGTTGG 59.113 52.381 0.00 0.00 0.00 3.77
4149 4937 2.548067 GCCAATATACTACTGGCGCTGT 60.548 50.000 7.64 9.68 45.72 4.40
4285 5073 4.332819 CGCCACTTGGGAGAGTTTATTAAG 59.667 45.833 0.00 0.00 39.08 1.85
4288 5076 2.711542 CGCCACTTGGGAGAGTTTATT 58.288 47.619 0.00 0.00 39.08 1.40
4476 5281 0.598065 ATTCTGGTGCGTCCTTTTGC 59.402 50.000 0.00 0.00 37.07 3.68
4510 5319 3.669536 ACAGCTTCAGTTAAAGAGCTCC 58.330 45.455 10.93 0.00 0.00 4.70
4527 5340 2.095516 GCAGACTAGGAAAAGCAACAGC 60.096 50.000 0.00 0.00 0.00 4.40
4555 5368 2.279741 TCAAATCGGCTCCATCGAAAG 58.720 47.619 0.00 0.00 40.15 2.62
4610 5424 2.019249 CCATCTGCACCACCAATACAG 58.981 52.381 0.00 0.00 0.00 2.74
4748 5562 0.593773 GCGCAGAAGTCGAGGATCTC 60.594 60.000 0.30 0.00 0.00 2.75
4937 5754 4.991056 TCAGTCTTCTCAAAAATCGGACAG 59.009 41.667 0.00 0.00 0.00 3.51
4982 5799 4.157105 GCCTAGCTACCTACATAAGCTCTC 59.843 50.000 0.00 0.00 42.89 3.20
4989 5806 4.914983 ACATACGCCTAGCTACCTACATA 58.085 43.478 0.00 0.00 0.00 2.29
4990 5807 3.764218 ACATACGCCTAGCTACCTACAT 58.236 45.455 0.00 0.00 0.00 2.29
4996 5813 4.645956 CGTACATACATACGCCTAGCTAC 58.354 47.826 0.00 0.00 41.28 3.58
5013 5830 4.812091 GTGATGCCCAATTACATACGTACA 59.188 41.667 0.00 0.00 0.00 2.90
5017 5834 4.126437 TCTGTGATGCCCAATTACATACG 58.874 43.478 0.00 0.00 34.53 3.06
5021 5838 2.290832 TGCTCTGTGATGCCCAATTACA 60.291 45.455 0.00 0.00 33.95 2.41
5022 5839 2.357009 CTGCTCTGTGATGCCCAATTAC 59.643 50.000 0.00 0.00 0.00 1.89
5024 5841 1.471119 CTGCTCTGTGATGCCCAATT 58.529 50.000 0.00 0.00 0.00 2.32
5025 5842 0.395311 CCTGCTCTGTGATGCCCAAT 60.395 55.000 0.00 0.00 0.00 3.16
5026 5843 1.001764 CCTGCTCTGTGATGCCCAA 60.002 57.895 0.00 0.00 0.00 4.12
5027 5844 1.276859 ATCCTGCTCTGTGATGCCCA 61.277 55.000 0.00 0.00 0.00 5.36
5028 5845 0.106819 AATCCTGCTCTGTGATGCCC 60.107 55.000 0.00 0.00 0.00 5.36
5029 5846 2.492012 CTAATCCTGCTCTGTGATGCC 58.508 52.381 0.00 0.00 0.00 4.40
5030 5847 2.158842 ACCTAATCCTGCTCTGTGATGC 60.159 50.000 0.00 0.00 0.00 3.91
5054 5871 7.820386 AGTAGAGTACATCTATACATCTCCACG 59.180 40.741 0.00 0.00 42.50 4.94
5079 5896 3.123453 CACATACATGACACCAACGTGAG 59.877 47.826 0.00 0.00 43.14 3.51
5080 5897 3.063485 CACATACATGACACCAACGTGA 58.937 45.455 0.00 0.00 43.14 4.35
5081 5898 2.159430 CCACATACATGACACCAACGTG 59.841 50.000 0.00 0.00 46.11 4.49
5154 6007 2.861462 TTTTTACCAGCACAGCACAC 57.139 45.000 0.00 0.00 0.00 3.82
5179 6034 5.799213 AGTGAGAAACTGGAGATCGAAAAT 58.201 37.500 0.00 0.00 37.88 1.82
5185 6040 4.181309 ACGAAGTGAGAAACTGGAGATC 57.819 45.455 0.00 0.00 42.51 2.75
5187 6042 4.142790 AGTACGAAGTGAGAAACTGGAGA 58.857 43.478 0.00 0.00 45.73 3.71
5193 6048 6.089685 GGATGAAGAAGTACGAAGTGAGAAAC 59.910 42.308 0.00 0.00 45.73 2.78
5197 6052 5.317733 AGGATGAAGAAGTACGAAGTGAG 57.682 43.478 0.00 0.00 45.73 3.51
5199 6054 5.029014 CGTAGGATGAAGAAGTACGAAGTG 58.971 45.833 0.00 0.00 45.73 3.16
5242 6104 2.225467 GGGTCTAAGATGCTGCCAATC 58.775 52.381 0.00 0.00 0.00 2.67
5243 6105 1.133668 GGGGTCTAAGATGCTGCCAAT 60.134 52.381 0.00 0.00 0.00 3.16
5252 6114 6.388619 ACACATTTAACAGGGGTCTAAGAT 57.611 37.500 0.00 0.00 0.00 2.40
5253 6115 5.836024 ACACATTTAACAGGGGTCTAAGA 57.164 39.130 0.00 0.00 0.00 2.10
5255 6117 6.366340 TGAAACACATTTAACAGGGGTCTAA 58.634 36.000 0.00 0.00 0.00 2.10
5260 6122 5.665459 TGTTTGAAACACATTTAACAGGGG 58.335 37.500 6.66 0.00 36.25 4.79
5331 6229 3.373439 GCTTGTTGGAGCATACAGAGAAG 59.627 47.826 0.00 0.00 42.25 2.85
5361 6259 2.332514 CAACTTGTGGCTGCGTGG 59.667 61.111 0.00 0.00 0.00 4.94
5362 6260 2.332514 CCAACTTGTGGCTGCGTG 59.667 61.111 0.00 0.00 41.72 5.34
5376 6289 4.524714 TGTTCGCTTATTCCCATTTTCCAA 59.475 37.500 0.00 0.00 0.00 3.53
5506 6430 5.078256 ACTTGCTAAGACAGGTAGTACAGT 58.922 41.667 2.06 0.00 0.00 3.55
5514 6438 4.351874 TTGCTTACTTGCTAAGACAGGT 57.648 40.909 3.37 0.00 34.69 4.00
5525 6449 6.727824 ATGTAGTACAGCTTTGCTTACTTG 57.272 37.500 9.25 0.00 36.40 3.16
5580 6906 4.408921 ACACAAAGGATCATTATCTCGGGA 59.591 41.667 0.00 0.00 32.29 5.14
5581 6907 4.708177 ACACAAAGGATCATTATCTCGGG 58.292 43.478 0.00 0.00 32.29 5.14
5582 6908 6.280643 TGTACACAAAGGATCATTATCTCGG 58.719 40.000 0.00 0.00 32.29 4.63
5593 6919 4.323417 TCGAAATGCTGTACACAAAGGAT 58.677 39.130 0.00 0.00 0.00 3.24
5637 6974 3.002791 CAGACCAAGTGATACGTTGCAT 58.997 45.455 0.00 0.00 0.00 3.96
5656 6994 4.940046 ACTAGCTGATTGATTGACCAACAG 59.060 41.667 0.00 0.00 32.99 3.16
5657 6995 4.696877 CACTAGCTGATTGATTGACCAACA 59.303 41.667 0.00 0.00 0.00 3.33
5658 6996 4.937620 TCACTAGCTGATTGATTGACCAAC 59.062 41.667 0.00 0.00 0.00 3.77
5659 6997 4.937620 GTCACTAGCTGATTGATTGACCAA 59.062 41.667 0.00 0.00 0.00 3.67
5660 6998 4.020307 TGTCACTAGCTGATTGATTGACCA 60.020 41.667 0.00 0.00 32.62 4.02
5661 6999 4.507710 TGTCACTAGCTGATTGATTGACC 58.492 43.478 0.00 0.00 32.62 4.02
5662 7000 6.674694 AATGTCACTAGCTGATTGATTGAC 57.325 37.500 0.00 0.00 33.91 3.18
5663 7001 7.330262 TGTAATGTCACTAGCTGATTGATTGA 58.670 34.615 0.00 0.00 0.00 2.57
5676 7014 4.938832 CCCACGGATTTTGTAATGTCACTA 59.061 41.667 0.00 0.00 0.00 2.74
5704 7042 2.105128 CGGCGGACATCTGTCTCC 59.895 66.667 9.98 10.12 44.20 3.71
5706 7044 3.461773 CCCGGCGGACATCTGTCT 61.462 66.667 30.79 0.00 44.20 3.41
5721 7059 1.741770 CCACTTGCGACAGTAGCCC 60.742 63.158 2.88 0.00 0.00 5.19
5753 7091 4.360405 TTTCCCTTGGAGCCGGGC 62.360 66.667 12.11 12.11 40.41 6.13
5754 7092 2.361230 GTTTCCCTTGGAGCCGGG 60.361 66.667 2.18 0.00 42.05 5.73
5796 7137 1.303561 AATGGTGGACACGCAGCAT 60.304 52.632 0.00 0.00 40.69 3.79
5892 7233 3.849844 GTGTGCTGAGCCACAGTTTGC 62.850 57.143 17.31 1.61 45.54 3.68
5893 7234 0.029834 GTGTGCTGAGCCACAGTTTG 59.970 55.000 17.31 0.00 45.54 2.93
5894 7235 1.439353 CGTGTGCTGAGCCACAGTTT 61.439 55.000 20.45 0.00 45.54 2.66
5895 7236 1.889105 CGTGTGCTGAGCCACAGTT 60.889 57.895 20.45 0.00 45.54 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.