Multiple sequence alignment - TraesCS3D01G310100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G310100 chr3D 100.000 4998 0 0 1 4998 424348381 424343384 0.000000e+00 9230.0
1 TraesCS3D01G310100 chr3B 95.223 4438 167 26 590 4998 554097647 554093226 0.000000e+00 6979.0
2 TraesCS3D01G310100 chr3B 91.667 204 5 6 393 590 554097946 554097749 6.380000e-69 272.0
3 TraesCS3D01G310100 chr3B 89.333 75 7 1 1 75 554098347 554098274 5.330000e-15 93.5
4 TraesCS3D01G310100 chr3A 95.933 4328 119 13 721 4998 564446255 564450575 0.000000e+00 6964.0
5 TraesCS3D01G310100 chr3A 95.142 247 5 3 745 986 564444284 564444528 2.820000e-102 383.0
6 TraesCS3D01G310100 chr3A 83.978 362 17 12 393 743 564443689 564444020 4.860000e-80 309.0
7 TraesCS3D01G310100 chr3A 94.643 56 3 0 1 56 564443266 564443321 2.480000e-13 87.9
8 TraesCS3D01G310100 chr3A 86.567 67 6 3 167 233 564443356 564443419 2.500000e-08 71.3
9 TraesCS3D01G310100 chr3A 89.362 47 2 2 4606 4649 564451109 564451155 6.990000e-04 56.5
10 TraesCS3D01G310100 chr2D 80.682 88 14 2 4582 4669 24911741 24911825 1.160000e-06 65.8
11 TraesCS3D01G310100 chr2D 100.000 32 0 0 4580 4611 24911712 24911681 5.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G310100 chr3D 424343384 424348381 4997 True 9230.000000 9230 100.000000 1 4998 1 chr3D.!!$R1 4997
1 TraesCS3D01G310100 chr3B 554093226 554098347 5121 True 2448.166667 6979 92.074333 1 4998 3 chr3B.!!$R1 4997
2 TraesCS3D01G310100 chr3A 564443266 564451155 7889 False 1311.950000 6964 90.937500 1 4998 6 chr3A.!!$F1 4997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 439 0.104120 CCGTGATCCGTCCATTAGCA 59.896 55.000 0.00 0.00 33.66 3.49 F
343 453 0.321298 TTAGCACCAACTTCGAGGCC 60.321 55.000 0.00 0.00 0.00 5.19 F
860 1370 0.394899 GGGCCCAAGGATCTCAGTTG 60.395 60.000 19.95 0.00 0.00 3.16 F
1599 4110 1.071814 GAAGGCGTACACCAACCCA 59.928 57.895 2.11 0.00 0.00 4.51 F
2538 5049 0.039798 TTAGTGATCGGCGCGTATCC 60.040 55.000 8.43 0.00 0.00 2.59 F
3645 6156 0.038310 AGTTTGGGCAGCCCTAAGAC 59.962 55.000 31.51 21.65 45.70 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 4515 0.680618 TTTCCTTTACAGCGTCCGGA 59.319 50.000 0.00 0.00 0.00 5.14 R
2362 4873 1.730446 GCTTTTGTTGATCAGCTCCGC 60.730 52.381 11.09 4.84 0.00 5.54 R
2363 4874 1.536766 TGCTTTTGTTGATCAGCTCCG 59.463 47.619 11.09 0.00 0.00 4.63 R
2983 5494 1.398390 GGTAAGGCTTGCAATCTCACG 59.602 52.381 17.16 0.00 0.00 4.35 R
3727 6253 0.094558 CGACACACACACACACACAC 59.905 55.000 0.00 0.00 0.00 3.82 R
4680 7229 0.036671 ATCCGAGTTTTCGTCCCACC 60.037 55.000 0.00 0.00 45.28 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.284829 TGGTTGCTGTGATTGATGACTA 57.715 40.909 0.00 0.00 0.00 2.59
40 41 4.186926 TGCTGTGATTGATGACTAAGAGC 58.813 43.478 0.00 0.00 0.00 4.09
43 44 5.452496 GCTGTGATTGATGACTAAGAGCCTA 60.452 44.000 0.00 0.00 0.00 3.93
78 79 2.042464 AGTGTTGGAGCTGACAGAGAA 58.958 47.619 6.65 0.00 0.00 2.87
79 80 2.636893 AGTGTTGGAGCTGACAGAGAAT 59.363 45.455 6.65 0.00 0.00 2.40
80 81 2.740981 GTGTTGGAGCTGACAGAGAATG 59.259 50.000 6.65 0.00 0.00 2.67
81 82 2.289882 TGTTGGAGCTGACAGAGAATGG 60.290 50.000 6.65 0.00 0.00 3.16
82 83 1.649321 TGGAGCTGACAGAGAATGGT 58.351 50.000 6.65 0.00 0.00 3.55
83 84 1.552337 TGGAGCTGACAGAGAATGGTC 59.448 52.381 6.65 0.00 34.63 4.02
84 85 1.830477 GGAGCTGACAGAGAATGGTCT 59.170 52.381 6.65 0.00 36.55 3.85
86 87 2.495270 GAGCTGACAGAGAATGGTCTGA 59.505 50.000 6.65 0.00 46.02 3.27
87 88 2.902486 AGCTGACAGAGAATGGTCTGAA 59.098 45.455 6.65 0.03 46.02 3.02
88 89 2.999355 GCTGACAGAGAATGGTCTGAAC 59.001 50.000 6.65 5.87 46.02 3.18
89 90 3.306641 GCTGACAGAGAATGGTCTGAACT 60.307 47.826 6.65 0.00 46.02 3.01
90 91 4.493547 CTGACAGAGAATGGTCTGAACTC 58.506 47.826 10.78 0.00 46.02 3.01
91 92 3.057245 TGACAGAGAATGGTCTGAACTCG 60.057 47.826 10.78 0.00 46.02 4.18
92 93 3.157881 ACAGAGAATGGTCTGAACTCGA 58.842 45.455 10.78 0.00 46.02 4.04
93 94 3.574396 ACAGAGAATGGTCTGAACTCGAA 59.426 43.478 10.78 0.00 46.02 3.71
94 95 3.923461 CAGAGAATGGTCTGAACTCGAAC 59.077 47.826 0.00 0.00 46.02 3.95
95 96 2.917971 GAGAATGGTCTGAACTCGAACG 59.082 50.000 0.00 0.00 32.80 3.95
96 97 1.993370 GAATGGTCTGAACTCGAACGG 59.007 52.381 0.00 0.00 0.00 4.44
97 98 1.254026 ATGGTCTGAACTCGAACGGA 58.746 50.000 0.00 0.00 0.00 4.69
98 99 1.254026 TGGTCTGAACTCGAACGGAT 58.746 50.000 0.00 0.00 0.00 4.18
99 100 1.067846 TGGTCTGAACTCGAACGGATG 60.068 52.381 0.00 0.00 0.00 3.51
100 101 1.630148 GTCTGAACTCGAACGGATGG 58.370 55.000 0.00 0.00 0.00 3.51
101 102 0.108804 TCTGAACTCGAACGGATGGC 60.109 55.000 0.00 0.00 0.00 4.40
102 103 0.389817 CTGAACTCGAACGGATGGCA 60.390 55.000 0.00 0.00 0.00 4.92
103 104 0.389817 TGAACTCGAACGGATGGCAG 60.390 55.000 0.00 0.00 0.00 4.85
104 105 1.696832 GAACTCGAACGGATGGCAGC 61.697 60.000 0.00 0.00 0.00 5.25
105 106 2.125552 CTCGAACGGATGGCAGCA 60.126 61.111 4.64 0.00 0.00 4.41
106 107 2.125552 TCGAACGGATGGCAGCAG 60.126 61.111 4.64 2.38 0.00 4.24
107 108 3.869272 CGAACGGATGGCAGCAGC 61.869 66.667 4.64 0.00 41.10 5.25
108 109 3.869272 GAACGGATGGCAGCAGCG 61.869 66.667 4.64 1.98 43.41 5.18
109 110 4.704833 AACGGATGGCAGCAGCGT 62.705 61.111 4.64 2.73 43.41 5.07
112 113 3.503363 GGATGGCAGCAGCGTGAC 61.503 66.667 4.64 0.00 43.41 3.67
113 114 2.435586 GATGGCAGCAGCGTGACT 60.436 61.111 0.00 0.00 43.41 3.41
121 122 2.029518 CAGCGTGACTGGTGAGCA 59.970 61.111 1.50 0.00 43.19 4.26
122 123 2.025969 CAGCGTGACTGGTGAGCAG 61.026 63.158 10.51 10.51 43.19 4.24
123 124 2.203082 AGCGTGACTGGTGAGCAGA 61.203 57.895 19.57 0.00 0.00 4.26
124 125 1.300931 GCGTGACTGGTGAGCAGAA 60.301 57.895 19.57 3.11 0.00 3.02
125 126 1.287730 GCGTGACTGGTGAGCAGAAG 61.288 60.000 19.57 7.27 0.00 2.85
126 127 0.668706 CGTGACTGGTGAGCAGAAGG 60.669 60.000 19.57 7.88 0.00 3.46
127 128 0.681733 GTGACTGGTGAGCAGAAGGA 59.318 55.000 19.57 0.00 0.00 3.36
128 129 0.681733 TGACTGGTGAGCAGAAGGAC 59.318 55.000 19.57 4.91 0.00 3.85
151 156 5.186021 ACGAGGACAATCTTGTTAGATGTCT 59.814 40.000 0.00 0.00 42.43 3.41
159 164 7.386299 ACAATCTTGTTAGATGTCTTCAGTGTC 59.614 37.037 0.00 0.00 40.26 3.67
162 167 5.139435 TGTTAGATGTCTTCAGTGTCTGG 57.861 43.478 0.00 0.00 31.51 3.86
163 168 4.588951 TGTTAGATGTCTTCAGTGTCTGGT 59.411 41.667 0.00 0.00 31.51 4.00
164 169 3.951775 AGATGTCTTCAGTGTCTGGTC 57.048 47.619 0.00 0.00 31.51 4.02
165 170 2.564947 AGATGTCTTCAGTGTCTGGTCC 59.435 50.000 0.00 0.00 31.51 4.46
166 171 2.088104 TGTCTTCAGTGTCTGGTCCT 57.912 50.000 0.00 0.00 31.51 3.85
167 172 1.688735 TGTCTTCAGTGTCTGGTCCTG 59.311 52.381 0.00 0.00 31.51 3.86
168 173 1.964223 GTCTTCAGTGTCTGGTCCTGA 59.036 52.381 0.00 0.00 33.59 3.86
169 174 2.365617 GTCTTCAGTGTCTGGTCCTGAA 59.634 50.000 0.00 0.00 41.55 3.02
170 175 3.007398 GTCTTCAGTGTCTGGTCCTGAAT 59.993 47.826 0.00 0.00 42.51 2.57
205 210 3.958147 TCGGACATGATACACCTACACAT 59.042 43.478 0.00 0.00 0.00 3.21
233 240 1.324736 CGCAAGAGGTGAGAATTACGC 59.675 52.381 0.00 0.00 43.02 4.42
234 241 2.622436 GCAAGAGGTGAGAATTACGCT 58.378 47.619 0.00 0.00 0.00 5.07
256 366 0.313672 GAGAGCTGCTCGGTATGGAG 59.686 60.000 22.77 0.00 35.36 3.86
259 369 1.889829 GAGCTGCTCGGTATGGAGTAT 59.110 52.381 14.68 0.00 36.41 2.12
260 370 2.297597 GAGCTGCTCGGTATGGAGTATT 59.702 50.000 14.68 0.00 36.41 1.89
261 371 2.297597 AGCTGCTCGGTATGGAGTATTC 59.702 50.000 0.00 0.00 36.41 1.75
265 375 3.204597 CTCGGTATGGAGTATTCGAGC 57.795 52.381 0.00 0.00 35.87 5.03
271 381 5.462405 GGTATGGAGTATTCGAGCTACTTG 58.538 45.833 10.12 0.00 29.67 3.16
272 382 5.241064 GGTATGGAGTATTCGAGCTACTTGA 59.759 44.000 10.12 2.90 29.67 3.02
284 394 7.915293 TCGAGCTACTTGAAAATTTATTGGA 57.085 32.000 0.00 0.00 0.00 3.53
285 395 7.974675 TCGAGCTACTTGAAAATTTATTGGAG 58.025 34.615 0.00 0.00 0.00 3.86
286 396 7.606456 TCGAGCTACTTGAAAATTTATTGGAGT 59.394 33.333 0.00 0.00 0.00 3.85
287 397 7.693951 CGAGCTACTTGAAAATTTATTGGAGTG 59.306 37.037 0.00 0.00 0.00 3.51
288 398 8.635765 AGCTACTTGAAAATTTATTGGAGTGA 57.364 30.769 0.00 0.00 0.00 3.41
289 399 9.077885 AGCTACTTGAAAATTTATTGGAGTGAA 57.922 29.630 0.00 0.00 0.00 3.18
290 400 9.346725 GCTACTTGAAAATTTATTGGAGTGAAG 57.653 33.333 0.00 0.00 0.00 3.02
293 403 9.533253 ACTTGAAAATTTATTGGAGTGAAGTTG 57.467 29.630 0.00 0.00 0.00 3.16
305 415 7.727578 TGGAGTGAAGTTGGTATATGAGTTA 57.272 36.000 0.00 0.00 0.00 2.24
314 424 7.378966 AGTTGGTATATGAGTTATCATCCGTG 58.621 38.462 0.00 0.00 42.76 4.94
315 425 7.232737 AGTTGGTATATGAGTTATCATCCGTGA 59.767 37.037 0.00 0.00 42.76 4.35
316 426 7.718334 TGGTATATGAGTTATCATCCGTGAT 57.282 36.000 0.00 0.00 42.76 3.06
317 427 7.772166 TGGTATATGAGTTATCATCCGTGATC 58.228 38.462 0.00 0.00 42.76 2.92
318 428 7.147897 TGGTATATGAGTTATCATCCGTGATCC 60.148 40.741 0.00 0.00 42.76 3.36
319 429 3.643159 TGAGTTATCATCCGTGATCCG 57.357 47.619 0.00 0.00 43.87 4.18
320 430 2.956333 TGAGTTATCATCCGTGATCCGT 59.044 45.455 0.00 0.00 43.87 4.69
322 432 2.296471 AGTTATCATCCGTGATCCGTCC 59.704 50.000 0.00 0.00 43.87 4.79
324 434 1.342074 ATCATCCGTGATCCGTCCAT 58.658 50.000 0.00 0.00 41.16 3.41
326 436 2.312390 TCATCCGTGATCCGTCCATTA 58.688 47.619 0.00 0.00 33.66 1.90
327 437 2.296190 TCATCCGTGATCCGTCCATTAG 59.704 50.000 0.00 0.00 33.66 1.73
328 438 0.387929 TCCGTGATCCGTCCATTAGC 59.612 55.000 0.00 0.00 33.66 3.09
329 439 0.104120 CCGTGATCCGTCCATTAGCA 59.896 55.000 0.00 0.00 33.66 3.49
330 440 1.209128 CGTGATCCGTCCATTAGCAC 58.791 55.000 0.00 0.00 0.00 4.40
331 441 1.583054 GTGATCCGTCCATTAGCACC 58.417 55.000 0.00 0.00 0.00 5.01
332 442 1.134521 GTGATCCGTCCATTAGCACCA 60.135 52.381 0.00 0.00 0.00 4.17
333 443 1.557371 TGATCCGTCCATTAGCACCAA 59.443 47.619 0.00 0.00 0.00 3.67
335 445 0.981183 TCCGTCCATTAGCACCAACT 59.019 50.000 0.00 0.00 0.00 3.16
336 446 1.349688 TCCGTCCATTAGCACCAACTT 59.650 47.619 0.00 0.00 0.00 2.66
337 447 1.737793 CCGTCCATTAGCACCAACTTC 59.262 52.381 0.00 0.00 0.00 3.01
338 448 1.393539 CGTCCATTAGCACCAACTTCG 59.606 52.381 0.00 0.00 0.00 3.79
341 451 2.009774 CCATTAGCACCAACTTCGAGG 58.990 52.381 0.00 0.00 0.00 4.63
342 452 1.398390 CATTAGCACCAACTTCGAGGC 59.602 52.381 0.00 0.00 0.00 4.70
343 453 0.321298 TTAGCACCAACTTCGAGGCC 60.321 55.000 0.00 0.00 0.00 5.19
344 454 2.180159 TAGCACCAACTTCGAGGCCC 62.180 60.000 0.00 0.00 0.00 5.80
345 455 2.750350 CACCAACTTCGAGGCCCT 59.250 61.111 0.00 0.00 0.00 5.19
346 456 1.672356 CACCAACTTCGAGGCCCTG 60.672 63.158 0.00 0.00 0.00 4.45
347 457 1.841556 ACCAACTTCGAGGCCCTGA 60.842 57.895 0.00 0.00 0.00 3.86
348 458 1.376037 CCAACTTCGAGGCCCTGAC 60.376 63.158 0.00 0.00 0.00 3.51
349 459 1.371183 CAACTTCGAGGCCCTGACA 59.629 57.895 0.00 0.00 0.00 3.58
360 470 2.158475 AGGCCCTGACAAAGATCACAAA 60.158 45.455 0.00 0.00 0.00 2.83
368 478 4.044426 GACAAAGATCACAAAGCACAACC 58.956 43.478 0.00 0.00 0.00 3.77
382 492 1.000060 CACAACCCAAGGCTCAATGTG 60.000 52.381 0.00 0.00 0.00 3.21
385 495 0.482446 ACCCAAGGCTCAATGTGGAA 59.518 50.000 3.71 0.00 32.54 3.53
389 499 2.364970 CCAAGGCTCAATGTGGAAACAA 59.635 45.455 0.00 0.00 46.06 2.83
390 500 3.553508 CCAAGGCTCAATGTGGAAACAAG 60.554 47.826 0.00 0.00 46.06 3.16
391 501 1.615392 AGGCTCAATGTGGAAACAAGC 59.385 47.619 0.00 0.00 46.06 4.01
392 502 1.615392 GGCTCAATGTGGAAACAAGCT 59.385 47.619 0.00 0.00 46.06 3.74
393 503 2.036346 GGCTCAATGTGGAAACAAGCTT 59.964 45.455 0.00 0.00 46.06 3.74
394 504 3.493176 GGCTCAATGTGGAAACAAGCTTT 60.493 43.478 0.00 0.00 46.06 3.51
395 505 3.737774 GCTCAATGTGGAAACAAGCTTTC 59.262 43.478 0.00 0.00 46.06 2.62
396 506 4.737352 GCTCAATGTGGAAACAAGCTTTCA 60.737 41.667 0.00 0.00 46.06 2.69
397 507 4.935702 TCAATGTGGAAACAAGCTTTCAG 58.064 39.130 0.00 0.00 46.06 3.02
398 508 2.869233 TGTGGAAACAAGCTTTCAGC 57.131 45.000 0.00 0.00 46.06 4.26
419 556 3.978723 CTGACAGGCCGAGTGAGCG 62.979 68.421 8.69 0.00 0.00 5.03
426 566 2.174319 GCCGAGTGAGCGAAATCCC 61.174 63.158 0.00 0.00 0.00 3.85
437 577 2.684881 AGCGAAATCCCTTGTGCATTAG 59.315 45.455 0.00 0.00 0.00 1.73
438 578 2.423538 GCGAAATCCCTTGTGCATTAGT 59.576 45.455 0.00 0.00 0.00 2.24
439 579 3.731867 GCGAAATCCCTTGTGCATTAGTG 60.732 47.826 0.00 0.00 0.00 2.74
440 580 3.689161 CGAAATCCCTTGTGCATTAGTGA 59.311 43.478 0.00 0.00 0.00 3.41
488 628 2.941720 CCATAAGCTTCTCCAGTGCTTC 59.058 50.000 0.00 0.00 44.59 3.86
550 694 6.035650 GCATCGTTAAAGTCAGTAAGCACATA 59.964 38.462 0.00 0.00 0.00 2.29
551 695 7.254455 GCATCGTTAAAGTCAGTAAGCACATAT 60.254 37.037 0.00 0.00 0.00 1.78
552 696 7.520119 TCGTTAAAGTCAGTAAGCACATATG 57.480 36.000 0.00 0.00 0.00 1.78
555 699 8.227791 CGTTAAAGTCAGTAAGCACATATGTTT 58.772 33.333 5.37 1.59 33.34 2.83
559 703 4.335594 GTCAGTAAGCACATATGTTTCCCC 59.664 45.833 5.37 0.00 30.98 4.81
560 704 4.018870 TCAGTAAGCACATATGTTTCCCCA 60.019 41.667 5.37 0.00 30.98 4.96
561 705 4.336433 CAGTAAGCACATATGTTTCCCCAG 59.664 45.833 5.37 0.00 30.98 4.45
562 706 3.737559 AAGCACATATGTTTCCCCAGA 57.262 42.857 5.37 0.00 0.00 3.86
701 947 5.041695 AGGGGAACATATGGATCCTATCA 57.958 43.478 22.07 0.00 33.61 2.15
730 976 2.964978 GCGGGCTGCTCATTTGTT 59.035 55.556 11.99 0.00 41.73 2.83
860 1370 0.394899 GGGCCCAAGGATCTCAGTTG 60.395 60.000 19.95 0.00 0.00 3.16
866 1376 2.295885 CAAGGATCTCAGTTGGGCATC 58.704 52.381 0.00 0.00 0.00 3.91
1512 4023 1.349026 CGGCATATCTTGGATGGAGGT 59.651 52.381 0.00 0.00 0.00 3.85
1514 4025 3.748668 CGGCATATCTTGGATGGAGGTTT 60.749 47.826 0.00 0.00 0.00 3.27
1515 4026 3.571401 GGCATATCTTGGATGGAGGTTTG 59.429 47.826 0.00 0.00 0.00 2.93
1599 4110 1.071814 GAAGGCGTACACCAACCCA 59.928 57.895 2.11 0.00 0.00 4.51
1857 4368 2.342650 GCCCAGAAATTGCAGCGGA 61.343 57.895 0.00 0.00 0.00 5.54
2362 4873 4.640789 ATTACTGCAGAGAAGTACCTCG 57.359 45.455 23.35 0.00 38.19 4.63
2363 4874 0.528470 ACTGCAGAGAAGTACCTCGC 59.472 55.000 23.35 0.00 38.19 5.03
2538 5049 0.039798 TTAGTGATCGGCGCGTATCC 60.040 55.000 8.43 0.00 0.00 2.59
2836 5347 7.665690 TGATATCAGGAAGACTCAGATAAAGC 58.334 38.462 0.00 0.00 0.00 3.51
3172 5683 5.337089 CCTTCTTCATGTCTACAGAAGCTGA 60.337 44.000 0.82 0.35 38.83 4.26
3220 5731 3.989817 GCCAAATTGGTTTGCTCAACTAG 59.010 43.478 14.17 0.00 42.66 2.57
3617 6128 7.319646 GTCAGACATATTCCATCTATCCAGAC 58.680 42.308 0.00 0.00 32.25 3.51
3643 6154 0.251341 ACAGTTTGGGCAGCCCTAAG 60.251 55.000 31.51 20.08 45.70 2.18
3645 6156 0.038310 AGTTTGGGCAGCCCTAAGAC 59.962 55.000 31.51 21.65 45.70 3.01
3660 6171 4.080863 CCCTAAGACTGTCCTGCAAATAGT 60.081 45.833 3.76 0.00 0.00 2.12
4057 6598 9.890629 ACTGATATAGCATCAAGAAAAGTACAA 57.109 29.630 0.00 0.00 0.00 2.41
4075 6616 6.228258 AGTACAAGCTTTATTCCGAAACTCA 58.772 36.000 0.00 0.00 0.00 3.41
4127 6668 9.458374 GAGAATTCTATCTTCTGCAGTAGTTAC 57.542 37.037 18.55 4.62 33.18 2.50
4159 6700 5.276440 AGTACCTCATGTTCCTCTTGAGAT 58.724 41.667 10.76 0.00 45.41 2.75
4181 6722 2.430465 TGATTCTTCAGTGAAGCAGCC 58.570 47.619 25.31 14.96 37.42 4.85
4378 6919 2.263077 GTGTTAGCACGAGAGATGGTG 58.737 52.381 0.00 0.00 35.75 4.17
4402 6944 7.170658 GTGTATTAGAGAGAGGCATTTTAGCTG 59.829 40.741 0.00 0.00 34.17 4.24
4423 6965 2.549329 GCCTGCCCAAAATTGTTTTCAG 59.451 45.455 0.00 0.00 0.00 3.02
4424 6966 3.807553 CCTGCCCAAAATTGTTTTCAGT 58.192 40.909 0.00 0.00 0.00 3.41
4709 7259 4.577283 ACGAAAACTCGGATTTCCTTTTCA 59.423 37.500 16.46 0.00 37.45 2.69
4775 7352 3.650139 TCCAAGAAGCTCGTTTAGTGAC 58.350 45.455 0.00 0.00 0.00 3.67
4879 7464 6.732862 AGTTACCATAATCTGCATCCCTCTAT 59.267 38.462 0.00 0.00 0.00 1.98
4940 7525 8.184192 AGCAGTACACAAAACATAATAATCTGC 58.816 33.333 0.00 0.00 41.14 4.26
4962 7547 4.288531 CGAAACAGTAGTAATCGCCTAGG 58.711 47.826 3.67 3.67 32.79 3.02
4964 7549 5.008019 CGAAACAGTAGTAATCGCCTAGGTA 59.992 44.000 11.31 0.00 32.79 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.442244 ACTTGGAGTTAAGATCTTAGGCTCTT 59.558 38.462 28.60 17.68 35.88 2.85
40 41 7.602517 CAACACTTGGAGTTAAGATCTTAGG 57.397 40.000 14.63 0.00 0.00 2.69
66 67 2.533916 TCAGACCATTCTCTGTCAGCT 58.466 47.619 0.00 0.00 39.08 4.24
67 68 2.999355 GTTCAGACCATTCTCTGTCAGC 59.001 50.000 0.00 0.00 39.08 4.26
78 79 1.254026 TCCGTTCGAGTTCAGACCAT 58.746 50.000 0.00 0.00 0.00 3.55
79 80 1.067846 CATCCGTTCGAGTTCAGACCA 60.068 52.381 0.00 0.00 0.00 4.02
80 81 1.630148 CATCCGTTCGAGTTCAGACC 58.370 55.000 0.00 0.00 0.00 3.85
81 82 1.630148 CCATCCGTTCGAGTTCAGAC 58.370 55.000 0.00 0.00 0.00 3.51
82 83 0.108804 GCCATCCGTTCGAGTTCAGA 60.109 55.000 0.00 0.00 0.00 3.27
83 84 0.389817 TGCCATCCGTTCGAGTTCAG 60.390 55.000 0.00 0.00 0.00 3.02
84 85 0.389817 CTGCCATCCGTTCGAGTTCA 60.390 55.000 0.00 0.00 0.00 3.18
85 86 1.696832 GCTGCCATCCGTTCGAGTTC 61.697 60.000 0.00 0.00 0.00 3.01
86 87 1.741770 GCTGCCATCCGTTCGAGTT 60.742 57.895 0.00 0.00 0.00 3.01
87 88 2.125512 GCTGCCATCCGTTCGAGT 60.126 61.111 0.00 0.00 0.00 4.18
88 89 2.125552 TGCTGCCATCCGTTCGAG 60.126 61.111 0.00 0.00 0.00 4.04
89 90 2.125552 CTGCTGCCATCCGTTCGA 60.126 61.111 0.00 0.00 0.00 3.71
90 91 3.869272 GCTGCTGCCATCCGTTCG 61.869 66.667 3.85 0.00 0.00 3.95
91 92 3.869272 CGCTGCTGCCATCCGTTC 61.869 66.667 10.24 0.00 35.36 3.95
92 93 4.704833 ACGCTGCTGCCATCCGTT 62.705 61.111 10.24 0.00 35.36 4.44
95 96 3.503363 GTCACGCTGCTGCCATCC 61.503 66.667 10.24 0.00 35.36 3.51
96 97 2.435586 AGTCACGCTGCTGCCATC 60.436 61.111 10.24 0.00 35.36 3.51
97 98 2.745100 CAGTCACGCTGCTGCCAT 60.745 61.111 10.24 0.00 38.52 4.40
98 99 4.994471 CCAGTCACGCTGCTGCCA 62.994 66.667 10.24 0.00 43.71 4.92
99 100 4.996434 ACCAGTCACGCTGCTGCC 62.996 66.667 10.24 0.00 43.71 4.85
100 101 3.720193 CACCAGTCACGCTGCTGC 61.720 66.667 5.34 5.34 43.71 5.25
101 102 2.025969 CTCACCAGTCACGCTGCTG 61.026 63.158 0.00 0.00 43.71 4.41
102 103 2.341543 CTCACCAGTCACGCTGCT 59.658 61.111 0.00 0.00 43.71 4.24
103 104 3.418068 GCTCACCAGTCACGCTGC 61.418 66.667 0.00 0.00 43.71 5.25
104 105 2.025969 CTGCTCACCAGTCACGCTG 61.026 63.158 0.00 0.00 44.63 5.18
105 106 1.748329 TTCTGCTCACCAGTCACGCT 61.748 55.000 0.00 0.00 42.38 5.07
106 107 1.287730 CTTCTGCTCACCAGTCACGC 61.288 60.000 0.00 0.00 42.38 5.34
107 108 0.668706 CCTTCTGCTCACCAGTCACG 60.669 60.000 0.00 0.00 42.38 4.35
108 109 0.681733 TCCTTCTGCTCACCAGTCAC 59.318 55.000 0.00 0.00 42.38 3.67
109 110 0.681733 GTCCTTCTGCTCACCAGTCA 59.318 55.000 0.00 0.00 42.38 3.41
110 111 0.389166 CGTCCTTCTGCTCACCAGTC 60.389 60.000 0.00 0.00 42.38 3.51
111 112 0.827925 TCGTCCTTCTGCTCACCAGT 60.828 55.000 0.00 0.00 42.38 4.00
112 113 0.108898 CTCGTCCTTCTGCTCACCAG 60.109 60.000 0.00 0.00 43.17 4.00
113 114 1.536073 CCTCGTCCTTCTGCTCACCA 61.536 60.000 0.00 0.00 0.00 4.17
114 115 1.216710 CCTCGTCCTTCTGCTCACC 59.783 63.158 0.00 0.00 0.00 4.02
115 116 0.109039 GTCCTCGTCCTTCTGCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
116 117 0.539669 TGTCCTCGTCCTTCTGCTCA 60.540 55.000 0.00 0.00 0.00 4.26
117 118 0.603569 TTGTCCTCGTCCTTCTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
118 119 1.205893 GATTGTCCTCGTCCTTCTGCT 59.794 52.381 0.00 0.00 0.00 4.24
119 120 1.205893 AGATTGTCCTCGTCCTTCTGC 59.794 52.381 0.00 0.00 0.00 4.26
120 121 3.257393 CAAGATTGTCCTCGTCCTTCTG 58.743 50.000 0.00 0.00 0.00 3.02
121 122 2.900546 ACAAGATTGTCCTCGTCCTTCT 59.099 45.455 0.00 0.00 36.50 2.85
122 123 3.320673 ACAAGATTGTCCTCGTCCTTC 57.679 47.619 0.00 0.00 36.50 3.46
123 124 3.771577 AACAAGATTGTCCTCGTCCTT 57.228 42.857 0.00 0.00 41.31 3.36
124 125 4.087182 TCTAACAAGATTGTCCTCGTCCT 58.913 43.478 0.00 0.00 41.31 3.85
125 126 4.451629 TCTAACAAGATTGTCCTCGTCC 57.548 45.455 0.00 0.00 41.31 4.79
126 127 5.411781 ACATCTAACAAGATTGTCCTCGTC 58.588 41.667 0.00 0.00 41.31 4.20
127 128 5.186021 AGACATCTAACAAGATTGTCCTCGT 59.814 40.000 0.00 0.00 41.31 4.18
128 129 5.655488 AGACATCTAACAAGATTGTCCTCG 58.345 41.667 0.00 0.00 41.31 4.63
159 164 1.211212 TGCATCAGGATTCAGGACCAG 59.789 52.381 0.00 0.00 0.00 4.00
162 167 2.019984 GGTTGCATCAGGATTCAGGAC 58.980 52.381 0.00 0.00 0.00 3.85
163 168 1.918262 AGGTTGCATCAGGATTCAGGA 59.082 47.619 0.00 0.00 0.00 3.86
164 169 2.295885 GAGGTTGCATCAGGATTCAGG 58.704 52.381 0.00 0.00 0.00 3.86
165 170 1.938577 CGAGGTTGCATCAGGATTCAG 59.061 52.381 0.00 0.00 0.00 3.02
166 171 1.407299 CCGAGGTTGCATCAGGATTCA 60.407 52.381 0.00 0.00 0.00 2.57
167 172 1.134401 TCCGAGGTTGCATCAGGATTC 60.134 52.381 0.00 0.00 0.00 2.52
168 173 0.911769 TCCGAGGTTGCATCAGGATT 59.088 50.000 0.00 0.00 0.00 3.01
169 174 0.179000 GTCCGAGGTTGCATCAGGAT 59.821 55.000 8.46 0.00 0.00 3.24
170 175 1.191489 TGTCCGAGGTTGCATCAGGA 61.191 55.000 0.00 0.00 0.00 3.86
211 216 3.448686 CGTAATTCTCACCTCTTGCGAT 58.551 45.455 0.00 0.00 0.00 4.58
213 218 1.324736 GCGTAATTCTCACCTCTTGCG 59.675 52.381 0.00 0.00 0.00 4.85
214 219 2.622436 AGCGTAATTCTCACCTCTTGC 58.378 47.619 0.00 0.00 0.00 4.01
215 220 4.098044 TCCTAGCGTAATTCTCACCTCTTG 59.902 45.833 0.00 0.00 0.00 3.02
216 221 4.279145 TCCTAGCGTAATTCTCACCTCTT 58.721 43.478 0.00 0.00 0.00 2.85
221 228 3.634283 GCTCTCCTAGCGTAATTCTCAC 58.366 50.000 0.00 0.00 42.53 3.51
233 240 1.539388 CATACCGAGCAGCTCTCCTAG 59.461 57.143 20.39 4.11 38.62 3.02
234 241 1.610363 CATACCGAGCAGCTCTCCTA 58.390 55.000 20.39 6.90 38.62 2.94
244 354 3.204597 CTCGAATACTCCATACCGAGC 57.795 52.381 0.00 0.00 34.98 5.03
248 358 5.241064 TCAAGTAGCTCGAATACTCCATACC 59.759 44.000 9.70 0.00 32.29 2.73
259 369 8.330466 TCCAATAAATTTTCAAGTAGCTCGAA 57.670 30.769 0.00 0.00 0.00 3.71
260 370 7.606456 ACTCCAATAAATTTTCAAGTAGCTCGA 59.394 33.333 0.00 0.00 0.00 4.04
261 371 7.693951 CACTCCAATAAATTTTCAAGTAGCTCG 59.306 37.037 0.00 0.00 0.00 5.03
280 390 6.620877 ACTCATATACCAACTTCACTCCAA 57.379 37.500 0.00 0.00 0.00 3.53
281 391 6.620877 AACTCATATACCAACTTCACTCCA 57.379 37.500 0.00 0.00 0.00 3.86
283 393 9.988815 ATGATAACTCATATACCAACTTCACTC 57.011 33.333 0.00 0.00 40.39 3.51
284 394 9.988815 GATGATAACTCATATACCAACTTCACT 57.011 33.333 0.00 0.00 42.27 3.41
285 395 9.209175 GGATGATAACTCATATACCAACTTCAC 57.791 37.037 0.00 0.00 42.27 3.18
286 396 8.088365 CGGATGATAACTCATATACCAACTTCA 58.912 37.037 0.00 0.00 42.27 3.02
287 397 8.088981 ACGGATGATAACTCATATACCAACTTC 58.911 37.037 0.00 0.00 42.27 3.01
288 398 7.872993 CACGGATGATAACTCATATACCAACTT 59.127 37.037 0.00 0.00 42.27 2.66
289 399 7.232737 TCACGGATGATAACTCATATACCAACT 59.767 37.037 0.00 0.00 42.27 3.16
290 400 7.375834 TCACGGATGATAACTCATATACCAAC 58.624 38.462 0.00 0.00 42.27 3.77
291 401 7.533289 TCACGGATGATAACTCATATACCAA 57.467 36.000 0.00 0.00 42.27 3.67
293 403 7.203910 GGATCACGGATGATAACTCATATACC 58.796 42.308 0.00 0.00 46.01 2.73
314 424 1.940613 GTTGGTGCTAATGGACGGATC 59.059 52.381 0.00 0.00 35.23 3.36
315 425 1.559682 AGTTGGTGCTAATGGACGGAT 59.440 47.619 0.00 0.00 35.23 4.18
316 426 0.981183 AGTTGGTGCTAATGGACGGA 59.019 50.000 0.00 0.00 35.23 4.69
317 427 1.737793 GAAGTTGGTGCTAATGGACGG 59.262 52.381 0.00 0.00 35.23 4.79
318 428 1.393539 CGAAGTTGGTGCTAATGGACG 59.606 52.381 0.00 0.00 35.23 4.79
319 429 2.673368 CTCGAAGTTGGTGCTAATGGAC 59.327 50.000 0.00 0.00 0.00 4.02
320 430 2.354704 CCTCGAAGTTGGTGCTAATGGA 60.355 50.000 0.00 0.00 0.00 3.41
322 432 1.398390 GCCTCGAAGTTGGTGCTAATG 59.602 52.381 0.00 0.00 0.00 1.90
324 434 0.321298 GGCCTCGAAGTTGGTGCTAA 60.321 55.000 0.00 0.00 0.00 3.09
326 436 2.032681 GGCCTCGAAGTTGGTGCT 59.967 61.111 0.00 0.00 0.00 4.40
327 437 3.056328 GGGCCTCGAAGTTGGTGC 61.056 66.667 0.84 0.00 0.00 5.01
328 438 1.672356 CAGGGCCTCGAAGTTGGTG 60.672 63.158 0.95 0.00 0.00 4.17
329 439 1.841556 TCAGGGCCTCGAAGTTGGT 60.842 57.895 0.95 0.00 0.00 3.67
330 440 1.376037 GTCAGGGCCTCGAAGTTGG 60.376 63.158 0.95 0.00 0.00 3.77
331 441 0.250295 TTGTCAGGGCCTCGAAGTTG 60.250 55.000 0.95 0.00 0.00 3.16
332 442 0.472471 TTTGTCAGGGCCTCGAAGTT 59.528 50.000 0.95 0.00 0.00 2.66
333 443 0.035458 CTTTGTCAGGGCCTCGAAGT 59.965 55.000 0.95 0.00 0.00 3.01
335 445 0.984230 ATCTTTGTCAGGGCCTCGAA 59.016 50.000 0.95 0.00 0.00 3.71
336 446 0.537188 GATCTTTGTCAGGGCCTCGA 59.463 55.000 0.95 1.69 0.00 4.04
337 447 0.250234 TGATCTTTGTCAGGGCCTCG 59.750 55.000 0.95 0.00 0.00 4.63
338 448 1.003580 TGTGATCTTTGTCAGGGCCTC 59.996 52.381 0.95 0.00 0.00 4.70
341 451 2.352127 GCTTTGTGATCTTTGTCAGGGC 60.352 50.000 0.00 0.00 0.00 5.19
342 452 2.886523 TGCTTTGTGATCTTTGTCAGGG 59.113 45.455 0.00 0.00 0.00 4.45
343 453 3.316029 TGTGCTTTGTGATCTTTGTCAGG 59.684 43.478 0.00 0.00 0.00 3.86
344 454 4.556942 TGTGCTTTGTGATCTTTGTCAG 57.443 40.909 0.00 0.00 0.00 3.51
345 455 4.439974 GGTTGTGCTTTGTGATCTTTGTCA 60.440 41.667 0.00 0.00 0.00 3.58
346 456 4.044426 GGTTGTGCTTTGTGATCTTTGTC 58.956 43.478 0.00 0.00 0.00 3.18
347 457 3.181476 GGGTTGTGCTTTGTGATCTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
348 458 3.181477 TGGGTTGTGCTTTGTGATCTTTG 60.181 43.478 0.00 0.00 0.00 2.77
349 459 3.030291 TGGGTTGTGCTTTGTGATCTTT 58.970 40.909 0.00 0.00 0.00 2.52
360 470 0.178953 ATTGAGCCTTGGGTTGTGCT 60.179 50.000 0.00 0.00 36.62 4.40
368 478 1.962807 TGTTTCCACATTGAGCCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
391 501 2.684843 GCCTGTCAGCGGCTGAAAG 61.685 63.158 33.71 33.71 43.44 2.62
392 502 2.669569 GCCTGTCAGCGGCTGAAA 60.670 61.111 32.30 26.60 42.46 2.69
393 503 4.704833 GGCCTGTCAGCGGCTGAA 62.705 66.667 32.30 20.74 46.73 3.02
410 547 1.002366 CAAGGGATTTCGCTCACTCG 58.998 55.000 0.00 0.00 38.25 4.18
419 556 4.702131 ACTCACTAATGCACAAGGGATTTC 59.298 41.667 2.70 0.00 38.60 2.17
426 566 2.430465 AGGCACTCACTAATGCACAAG 58.570 47.619 0.00 0.00 43.93 3.16
667 913 7.071447 TCCATATGTTCCCCTATTCGTAAAGAA 59.929 37.037 1.24 0.00 43.93 2.52
674 920 4.471386 AGGATCCATATGTTCCCCTATTCG 59.529 45.833 15.82 0.00 0.00 3.34
683 929 6.112058 GGAGCTTGATAGGATCCATATGTTC 58.888 44.000 15.82 6.21 38.90 3.18
730 976 3.826157 CCAACTGGACAAATCTTAAGCCA 59.174 43.478 0.00 0.00 37.39 4.75
860 1370 1.963515 ACTTTCAACCACTTGATGCCC 59.036 47.619 0.00 0.00 36.26 5.36
866 1376 9.219603 TGATTAGAAGATACTTTCAACCACTTG 57.780 33.333 0.00 0.00 0.00 3.16
1329 3840 2.108566 CTCAGCTGAGCCCGGATG 59.891 66.667 29.79 5.85 36.45 3.51
1512 4023 1.968493 ACACTTAGCTCCGACTCCAAA 59.032 47.619 0.00 0.00 0.00 3.28
1514 4025 1.174783 GACACTTAGCTCCGACTCCA 58.825 55.000 0.00 0.00 0.00 3.86
1515 4026 1.174783 TGACACTTAGCTCCGACTCC 58.825 55.000 0.00 0.00 0.00 3.85
1586 4097 0.942410 CACGTCTGGGTTGGTGTACG 60.942 60.000 0.00 0.00 36.48 3.67
1599 4110 3.026630 TCGAAATGCTTCTTCACGTCT 57.973 42.857 0.00 0.00 0.00 4.18
1626 4137 1.099689 TCGACACATAGATCCACGCA 58.900 50.000 0.00 0.00 0.00 5.24
2004 4515 0.680618 TTTCCTTTACAGCGTCCGGA 59.319 50.000 0.00 0.00 0.00 5.14
2362 4873 1.730446 GCTTTTGTTGATCAGCTCCGC 60.730 52.381 11.09 4.84 0.00 5.54
2363 4874 1.536766 TGCTTTTGTTGATCAGCTCCG 59.463 47.619 11.09 0.00 0.00 4.63
2538 5049 2.953648 TGATACATGAGGCATTTGCAGG 59.046 45.455 0.00 0.00 44.36 4.85
2589 5100 6.033831 CACTGTTGTTGAACATGAAAACAGAC 59.966 38.462 25.30 8.56 44.53 3.51
2836 5347 6.674005 ACATTTGATTTGAAACGTGATTCG 57.326 33.333 0.00 0.00 46.00 3.34
2983 5494 1.398390 GGTAAGGCTTGCAATCTCACG 59.602 52.381 17.16 0.00 0.00 4.35
3172 5683 4.080695 TGTCTGCAAAGATCCAGCTAGATT 60.081 41.667 0.00 0.00 0.00 2.40
3220 5731 2.316119 CGCAGCTTTGTAAGGTTGTC 57.684 50.000 0.00 0.00 37.06 3.18
3617 6128 1.606224 GCTGCCCAAACTGTTGAATGG 60.606 52.381 3.28 3.28 36.83 3.16
3643 6154 4.762251 AGGAAAACTATTTGCAGGACAGTC 59.238 41.667 0.00 0.00 39.15 3.51
3645 6156 5.123979 GGTAGGAAAACTATTTGCAGGACAG 59.876 44.000 0.00 0.00 39.15 3.51
3660 6171 1.689813 TGTCAGCTCGTGGTAGGAAAA 59.310 47.619 0.00 0.00 0.00 2.29
3724 6250 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3725 6251 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3726 6252 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
3727 6253 0.094558 CGACACACACACACACACAC 59.905 55.000 0.00 0.00 0.00 3.82
3728 6254 1.631144 GCGACACACACACACACACA 61.631 55.000 0.00 0.00 0.00 3.72
3729 6255 1.060308 GCGACACACACACACACAC 59.940 57.895 0.00 0.00 0.00 3.82
4057 6598 7.681939 TTTACATGAGTTTCGGAATAAAGCT 57.318 32.000 0.00 0.00 0.00 3.74
4075 6616 9.263538 CTGCCATTTGTTATGCATAATTTACAT 57.736 29.630 21.52 7.95 32.53 2.29
4127 6668 7.068839 AGAGGAACATGAGGTACTAGTAATGTG 59.931 40.741 15.41 8.72 41.55 3.21
4159 6700 4.194640 GGCTGCTTCACTGAAGAATCATA 58.805 43.478 20.98 1.03 41.71 2.15
4378 6919 6.147000 GCAGCTAAAATGCCTCTCTCTAATAC 59.853 42.308 0.00 0.00 37.73 1.89
4402 6944 2.549329 CTGAAAACAATTTTGGGCAGGC 59.451 45.455 0.00 0.00 31.94 4.85
4504 7049 8.060679 TGAACATATTTTGAACAAAATTGTGCG 58.939 29.630 23.90 13.75 45.67 5.34
4611 7156 7.601856 TGTTTATTTGAGGGCTACATGAAAAG 58.398 34.615 0.00 0.00 0.00 2.27
4680 7229 0.036671 ATCCGAGTTTTCGTCCCACC 60.037 55.000 0.00 0.00 45.28 4.61
4709 7259 8.669946 ATCGGAAACCACATTTTTAATGTTTT 57.330 26.923 2.45 2.90 0.00 2.43
4730 7282 6.447162 AGCCTGTTTTTCTTTCTTAAATCGG 58.553 36.000 0.00 0.00 0.00 4.18
4775 7352 3.329386 CAGGCACATACTATCCCGAATG 58.671 50.000 0.00 0.00 0.00 2.67
4940 7525 4.201990 ACCTAGGCGATTACTACTGTTTCG 60.202 45.833 9.30 0.00 35.29 3.46
4962 7547 5.670341 GCATAATACCGCCGTTTGATCATAC 60.670 44.000 6.25 6.25 0.00 2.39
4964 7549 3.188460 GCATAATACCGCCGTTTGATCAT 59.812 43.478 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.