Multiple sequence alignment - TraesCS3D01G309500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G309500 chr3D 100.000 3145 0 0 1 3145 423833858 423837002 0.000000e+00 5808.0
1 TraesCS3D01G309500 chr3D 85.032 314 40 6 2314 2626 14034735 14034428 2.360000e-81 313.0
2 TraesCS3D01G309500 chr3D 84.305 223 26 3 1634 1853 423841101 423841317 3.180000e-50 209.0
3 TraesCS3D01G309500 chr3D 92.063 63 5 0 2942 3004 19626685 19626747 4.320000e-14 89.8
4 TraesCS3D01G309500 chr3D 90.625 64 4 2 2942 3004 536416660 536416722 2.010000e-12 84.2
5 TraesCS3D01G309500 chr3A 92.025 1931 95 25 1 1878 565462430 565460506 0.000000e+00 2658.0
6 TraesCS3D01G309500 chr3A 80.863 371 34 20 1905 2241 565455297 565454930 1.120000e-64 257.0
7 TraesCS3D01G309500 chr3A 81.847 314 40 14 2506 2810 108884776 108885081 6.740000e-62 248.0
8 TraesCS3D01G309500 chr3A 90.789 76 7 0 2867 2942 108885108 108885183 5.550000e-18 102.0
9 TraesCS3D01G309500 chr3A 93.023 43 1 1 2271 2313 565454930 565454890 9.420000e-06 62.1
10 TraesCS3D01G309500 chr3B 91.164 1924 101 19 402 2313 553098951 553097085 0.000000e+00 2547.0
11 TraesCS3D01G309500 chr3B 89.262 149 15 1 2795 2942 133443179 133443031 5.360000e-43 185.0
12 TraesCS3D01G309500 chr3B 81.702 235 15 13 1889 2096 553066471 553066238 1.500000e-38 171.0
13 TraesCS3D01G309500 chr5D 87.898 314 30 7 2314 2626 531268151 531268457 2.310000e-96 363.0
14 TraesCS3D01G309500 chr5D 84.034 357 47 10 2332 2683 479383723 479384074 5.030000e-88 335.0
15 TraesCS3D01G309500 chr5D 86.971 307 28 7 2314 2620 505026596 505026302 5.030000e-88 335.0
16 TraesCS3D01G309500 chr5D 85.948 306 37 6 2322 2626 505011980 505011680 3.910000e-84 322.0
17 TraesCS3D01G309500 chr1D 83.812 383 43 17 2311 2684 465939619 465939247 2.320000e-91 346.0
18 TraesCS3D01G309500 chr1D 82.825 361 47 14 2306 2660 453638641 453638992 3.050000e-80 309.0
19 TraesCS3D01G309500 chr2D 95.098 204 10 0 2942 3145 588722530 588722733 3.910000e-84 322.0
20 TraesCS3D01G309500 chr2D 85.366 164 20 4 2310 2471 316148119 316147958 1.940000e-37 167.0
21 TraesCS3D01G309500 chr6D 83.242 364 44 10 2332 2691 418223412 418223062 5.060000e-83 318.0
22 TraesCS3D01G309500 chr6D 90.476 63 6 0 2942 3004 79887418 79887356 2.010000e-12 84.2
23 TraesCS3D01G309500 chr5A 77.823 487 85 22 2347 2821 412513180 412513655 2.390000e-71 279.0
24 TraesCS3D01G309500 chr5A 92.105 76 6 0 2867 2942 412513672 412513747 1.190000e-19 108.0
25 TraesCS3D01G309500 chr7D 88.947 190 15 3 2957 3145 531821597 531821413 2.440000e-56 230.0
26 TraesCS3D01G309500 chr2B 76.735 490 66 29 2342 2794 639529472 639528994 2.440000e-56 230.0
27 TraesCS3D01G309500 chr2B 91.411 163 11 1 2779 2941 791812661 791812502 1.470000e-53 220.0
28 TraesCS3D01G309500 chr2B 77.308 260 41 16 2332 2583 800881101 800881350 1.520000e-28 137.0
29 TraesCS3D01G309500 chr4D 77.487 382 57 24 2311 2686 465590441 465590083 5.320000e-48 202.0
30 TraesCS3D01G309500 chr7A 79.508 122 24 1 221 342 659408481 659408361 5.590000e-13 86.1
31 TraesCS3D01G309500 chr5B 91.525 59 4 1 2946 3004 386021237 386021294 2.600000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G309500 chr3D 423833858 423837002 3144 False 5808 5808 100.000 1 3145 1 chr3D.!!$F2 3144
1 TraesCS3D01G309500 chr3A 565460506 565462430 1924 True 2658 2658 92.025 1 1878 1 chr3A.!!$R1 1877
2 TraesCS3D01G309500 chr3B 553097085 553098951 1866 True 2547 2547 91.164 402 2313 1 chr3B.!!$R3 1911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 422 0.322546 AGAAACCATCCCGCTGTTCC 60.323 55.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2457 0.03601 AGCTCAATCCAACGGTCCAG 60.036 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.303022 TGATCAGGAAGTGTCAGGTTCC 59.697 50.000 5.95 5.95 42.38 3.62
25 26 2.123589 TCAGGAAGTGTCAGGTTCCAA 58.876 47.619 13.94 2.32 44.20 3.53
42 43 7.907841 GGTTCCAAACCCCTACATTATAATT 57.092 36.000 0.00 0.00 46.12 1.40
67 68 6.968263 TTTTCATGTTATTTCTCACCACCA 57.032 33.333 0.00 0.00 0.00 4.17
89 91 5.049405 CCATACACTGTGTTTGAGGTCTTTC 60.049 44.000 26.11 0.00 32.20 2.62
141 144 2.025418 CGCACGGAGTACCCAACAC 61.025 63.158 0.00 0.00 41.61 3.32
148 151 0.323957 GAGTACCCAACACTGTCCCC 59.676 60.000 0.00 0.00 0.00 4.81
159 162 3.368190 CTGTCCCCGCTCTCAGCAG 62.368 68.421 0.00 0.00 42.58 4.24
183 186 2.156098 AGGTGGGTCACTGCCATGT 61.156 57.895 0.00 0.00 34.40 3.21
208 211 2.586079 CCACGCGGGCTAGACATG 60.586 66.667 12.47 0.00 0.00 3.21
211 214 4.873129 CGCGGGCTAGACATGCGT 62.873 66.667 22.24 0.00 43.50 5.24
212 215 2.511600 GCGGGCTAGACATGCGTT 60.512 61.111 0.00 0.00 0.00 4.84
213 216 2.106683 GCGGGCTAGACATGCGTTT 61.107 57.895 0.00 0.00 0.00 3.60
223 227 5.237344 GCTAGACATGCGTTTGGATTAGAAT 59.763 40.000 0.00 0.00 0.00 2.40
232 236 2.620251 TGGATTAGAATGAGGCACCG 57.380 50.000 0.00 0.00 0.00 4.94
233 237 1.837439 TGGATTAGAATGAGGCACCGT 59.163 47.619 0.00 0.00 0.00 4.83
238 242 5.049405 GGATTAGAATGAGGCACCGTATTTG 60.049 44.000 0.00 0.00 0.00 2.32
248 252 3.883462 CGTATTTGCACGGCCAGA 58.117 55.556 2.24 0.00 38.26 3.86
255 259 1.034838 TTGCACGGCCAGACAAGTTT 61.035 50.000 2.24 0.00 0.00 2.66
262 266 2.356382 CGGCCAGACAAGTTTAAACACA 59.644 45.455 20.06 0.00 0.00 3.72
269 273 8.487176 GCCAGACAAGTTTAAACACATATTTTG 58.513 33.333 20.06 14.79 0.00 2.44
307 311 2.884012 AGACATCAAACCGAACATGCAA 59.116 40.909 0.00 0.00 0.00 4.08
318 322 3.243035 CCGAACATGCAAGACAAGTTGAA 60.243 43.478 10.54 0.00 40.15 2.69
319 323 3.725740 CGAACATGCAAGACAAGTTGAAC 59.274 43.478 10.54 3.37 40.15 3.18
340 344 8.106247 TGAACCACCTTCAATGTATTTAACTC 57.894 34.615 0.00 0.00 35.84 3.01
343 347 9.449719 AACCACCTTCAATGTATTTAACTCTAG 57.550 33.333 0.00 0.00 0.00 2.43
418 422 0.322546 AGAAACCATCCCGCTGTTCC 60.323 55.000 0.00 0.00 0.00 3.62
420 424 4.778143 ACCATCCCGCTGTTCCGC 62.778 66.667 0.00 0.00 0.00 5.54
545 554 3.889538 AGGGCCAAGTAGAAGTTTTCAAC 59.110 43.478 6.18 0.00 0.00 3.18
579 599 2.123342 GATCGATCGGTGCTTTCTGAG 58.877 52.381 16.41 0.00 0.00 3.35
607 627 4.459089 GGCAGAGGACACCGAGCC 62.459 72.222 0.00 0.00 33.99 4.70
615 635 3.607370 GACACCGAGCCCCTTCCAC 62.607 68.421 0.00 0.00 0.00 4.02
660 680 2.954756 CTACGCGCGGGTACTGTACG 62.955 65.000 35.22 16.21 40.10 3.67
1048 1096 4.380628 ACGACGACGACGACCTGC 62.381 66.667 25.15 0.00 42.66 4.85
1260 1317 1.689233 TCCCCAGGGGACATCTTCG 60.689 63.158 25.51 0.00 46.17 3.79
1428 1485 2.897780 GGCACCAAACGTACGTACA 58.102 52.632 23.12 0.00 0.00 2.90
1434 1491 4.377635 GCACCAAACGTACGTACATTGATT 60.378 41.667 28.94 18.54 0.00 2.57
1438 1495 6.423302 ACCAAACGTACGTACATTGATTACAA 59.577 34.615 28.94 0.00 40.42 2.41
1485 1542 2.310309 CTGCAAGTGACACGAGCAA 58.690 52.632 22.32 11.10 33.73 3.91
1495 1552 3.366422 GTGACACGAGCAATTCTCTTCTC 59.634 47.826 0.00 0.00 39.70 2.87
1497 1554 2.564947 ACACGAGCAATTCTCTTCTCCT 59.435 45.455 0.00 0.00 39.70 3.69
1525 1582 1.455383 CGCAGGGTGCCAAGAACTTT 61.455 55.000 0.00 0.00 41.12 2.66
1615 1672 1.102154 CAGAGCTGGTGAGATCGTCT 58.898 55.000 0.00 0.00 39.76 4.18
1686 1743 0.252197 GGCGGGTGTTCTTCTATGGT 59.748 55.000 0.00 0.00 0.00 3.55
1692 1749 1.130561 GTGTTCTTCTATGGTTGGCGC 59.869 52.381 0.00 0.00 0.00 6.53
1693 1750 1.271108 TGTTCTTCTATGGTTGGCGCA 60.271 47.619 10.83 0.00 0.00 6.09
1827 1884 2.358984 GGTAGGTGCGCGGGAAAA 60.359 61.111 8.83 0.00 0.00 2.29
1865 1922 3.577649 TCTTTCGACGAATTGCTCTCT 57.422 42.857 11.71 0.00 0.00 3.10
1870 1927 3.953766 TCGACGAATTGCTCTCTATCAC 58.046 45.455 0.00 0.00 0.00 3.06
1872 1929 4.814771 TCGACGAATTGCTCTCTATCACTA 59.185 41.667 0.00 0.00 0.00 2.74
1882 1939 3.886505 CTCTCTATCACTACCCGAAAGCT 59.113 47.826 0.00 0.00 0.00 3.74
2015 2072 2.850647 GTGCGTGTAGGTATCTTCGTTC 59.149 50.000 0.00 0.00 0.00 3.95
2020 2077 3.376546 GTGTAGGTATCTTCGTTCGAGGT 59.623 47.826 4.46 0.00 0.00 3.85
2021 2078 3.376234 TGTAGGTATCTTCGTTCGAGGTG 59.624 47.826 4.46 0.00 0.00 4.00
2051 2108 5.276270 CGAATAACAAATGCCTTGATGGAG 58.724 41.667 2.85 0.00 38.50 3.86
2077 2134 0.455815 GAAATCAAATCCGGCCGCTT 59.544 50.000 22.85 12.89 0.00 4.68
2098 2155 1.284657 CAGGATGCAGTGAAGCGTAG 58.715 55.000 0.00 0.00 37.31 3.51
2132 2189 4.876107 AGTTGTCAAGTTGTAAGTGGTGAG 59.124 41.667 2.11 0.00 0.00 3.51
2135 2192 3.495001 GTCAAGTTGTAAGTGGTGAGCTC 59.505 47.826 6.82 6.82 0.00 4.09
2152 2213 5.976534 GTGAGCTCATGAGTTGATGTACTAG 59.023 44.000 21.47 0.00 32.72 2.57
2159 2220 9.689976 CTCATGAGTTGATGTACTAGGAAATAG 57.310 37.037 14.95 0.00 33.90 1.73
2165 2226 7.928706 AGTTGATGTACTAGGAAATAGCATCAC 59.071 37.037 5.00 2.50 39.09 3.06
2180 2241 8.451908 AATAGCATCACCCTTTAATTCACTAC 57.548 34.615 0.00 0.00 0.00 2.73
2184 2245 6.498304 CATCACCCTTTAATTCACTACATGC 58.502 40.000 0.00 0.00 0.00 4.06
2185 2246 5.815581 TCACCCTTTAATTCACTACATGCT 58.184 37.500 0.00 0.00 0.00 3.79
2201 2262 3.713248 ACATGCTCCCTATGATGTGAAGA 59.287 43.478 0.00 0.00 0.00 2.87
2203 2264 2.435805 TGCTCCCTATGATGTGAAGACC 59.564 50.000 0.00 0.00 0.00 3.85
2204 2265 2.703007 GCTCCCTATGATGTGAAGACCT 59.297 50.000 0.00 0.00 0.00 3.85
2212 2273 4.263018 TGATGTGAAGACCTCTCACAAG 57.737 45.455 9.49 0.00 45.71 3.16
2243 2304 6.697395 AGGTGTACAATTTAAGATTTTGCCC 58.303 36.000 0.00 0.00 0.00 5.36
2246 2307 6.367695 GTGTACAATTTAAGATTTTGCCCCAC 59.632 38.462 0.00 0.00 0.00 4.61
2259 2320 0.730840 GCCCCACGATTTTAACTCGG 59.269 55.000 9.35 0.00 40.37 4.63
2260 2321 1.947212 GCCCCACGATTTTAACTCGGT 60.947 52.381 9.35 0.00 40.37 4.69
2264 2325 3.308866 CCCACGATTTTAACTCGGTCATC 59.691 47.826 9.35 0.00 40.37 2.92
2269 2330 4.204573 CGATTTTAACTCGGTCATCGTCTC 59.795 45.833 0.00 0.00 40.32 3.36
2271 2332 1.012086 TAACTCGGTCATCGTCTCGG 58.988 55.000 0.00 0.00 40.32 4.63
2275 2336 2.494918 GGTCATCGTCTCGGTGGG 59.505 66.667 2.68 0.00 38.63 4.61
2288 2349 1.228459 GGTGGGTCCCTTTGGTCAC 60.228 63.158 10.00 0.00 0.00 3.67
2298 2359 2.619849 CCCTTTGGTCACTGCATGAGAT 60.620 50.000 0.00 0.00 38.28 2.75
2299 2360 3.087031 CCTTTGGTCACTGCATGAGATT 58.913 45.455 0.00 0.00 38.28 2.40
2302 2363 5.183713 CCTTTGGTCACTGCATGAGATTTTA 59.816 40.000 0.00 0.00 38.28 1.52
2305 2366 6.441093 TGGTCACTGCATGAGATTTTATTC 57.559 37.500 0.00 0.00 38.28 1.75
2313 2374 7.013083 ACTGCATGAGATTTTATTCTGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2314 2375 6.829811 TGCATGAGATTTTATTCTGGTCATCA 59.170 34.615 0.00 0.00 0.00 3.07
2315 2376 7.012989 TGCATGAGATTTTATTCTGGTCATCAG 59.987 37.037 0.00 0.00 44.68 2.90
2328 2389 7.809546 TCTGGTCATCAGACTACTATGTTAG 57.190 40.000 0.00 0.00 46.71 2.34
2329 2390 7.347252 TCTGGTCATCAGACTACTATGTTAGT 58.653 38.462 0.00 0.00 46.71 2.24
2330 2391 7.834681 TCTGGTCATCAGACTACTATGTTAGTT 59.165 37.037 0.00 0.00 46.71 2.24
2331 2392 7.772166 TGGTCATCAGACTACTATGTTAGTTG 58.228 38.462 0.00 0.00 44.36 3.16
2332 2393 7.147897 TGGTCATCAGACTACTATGTTAGTTGG 60.148 40.741 0.00 0.00 44.36 3.77
2333 2394 7.203910 GTCATCAGACTACTATGTTAGTTGGG 58.796 42.308 0.00 0.00 41.64 4.12
2334 2395 7.068348 GTCATCAGACTACTATGTTAGTTGGGA 59.932 40.741 0.00 0.00 41.64 4.37
2335 2396 7.285629 TCATCAGACTACTATGTTAGTTGGGAG 59.714 40.741 0.00 0.00 40.14 4.30
2336 2397 6.728411 TCAGACTACTATGTTAGTTGGGAGA 58.272 40.000 0.00 0.00 40.14 3.71
2337 2398 7.179966 TCAGACTACTATGTTAGTTGGGAGAA 58.820 38.462 0.00 0.00 40.14 2.87
2338 2399 7.122353 TCAGACTACTATGTTAGTTGGGAGAAC 59.878 40.741 0.00 0.00 40.14 3.01
2339 2400 6.952358 AGACTACTATGTTAGTTGGGAGAACA 59.048 38.462 0.00 0.00 40.14 3.18
2340 2401 7.620094 AGACTACTATGTTAGTTGGGAGAACAT 59.380 37.037 5.00 5.00 44.07 2.71
2341 2402 7.556844 ACTACTATGTTAGTTGGGAGAACATG 58.443 38.462 9.20 0.00 42.33 3.21
2342 2403 6.620877 ACTATGTTAGTTGGGAGAACATGA 57.379 37.500 0.00 0.00 42.33 3.07
2343 2404 6.644347 ACTATGTTAGTTGGGAGAACATGAG 58.356 40.000 0.00 6.06 42.33 2.90
2344 2405 3.674997 TGTTAGTTGGGAGAACATGAGC 58.325 45.455 0.00 0.00 0.00 4.26
2345 2406 3.072330 TGTTAGTTGGGAGAACATGAGCA 59.928 43.478 0.00 0.00 0.00 4.26
2346 2407 4.263462 TGTTAGTTGGGAGAACATGAGCAT 60.263 41.667 0.00 0.00 0.00 3.79
2347 2408 3.446442 AGTTGGGAGAACATGAGCATT 57.554 42.857 0.00 0.00 0.00 3.56
2348 2409 3.350833 AGTTGGGAGAACATGAGCATTC 58.649 45.455 0.00 0.00 0.00 2.67
2349 2410 3.009916 AGTTGGGAGAACATGAGCATTCT 59.990 43.478 0.00 0.00 37.88 2.40
2350 2411 3.272574 TGGGAGAACATGAGCATTCTC 57.727 47.619 12.98 12.98 46.76 2.87
2361 2422 3.515630 TGAGCATTCTCAGAGTTTAGCG 58.484 45.455 0.00 0.00 43.95 4.26
2362 2423 3.193479 TGAGCATTCTCAGAGTTTAGCGA 59.807 43.478 0.00 0.00 43.95 4.93
2363 2424 4.142071 TGAGCATTCTCAGAGTTTAGCGAT 60.142 41.667 0.00 0.00 43.95 4.58
2364 2425 4.764172 AGCATTCTCAGAGTTTAGCGATT 58.236 39.130 0.00 0.00 0.00 3.34
2365 2426 4.808364 AGCATTCTCAGAGTTTAGCGATTC 59.192 41.667 0.00 0.00 0.00 2.52
2366 2427 4.808364 GCATTCTCAGAGTTTAGCGATTCT 59.192 41.667 0.00 0.00 0.00 2.40
2367 2428 5.051106 GCATTCTCAGAGTTTAGCGATTCTC 60.051 44.000 0.00 0.00 0.00 2.87
2368 2429 4.280101 TCTCAGAGTTTAGCGATTCTCG 57.720 45.455 0.00 0.00 43.89 4.04
2369 2430 3.065510 TCTCAGAGTTTAGCGATTCTCGG 59.934 47.826 0.00 0.00 40.84 4.63
2370 2431 1.855360 CAGAGTTTAGCGATTCTCGGC 59.145 52.381 0.00 0.00 40.84 5.54
2371 2432 1.202428 AGAGTTTAGCGATTCTCGGCC 60.202 52.381 0.00 0.00 40.84 6.13
2372 2433 0.527817 AGTTTAGCGATTCTCGGCCG 60.528 55.000 22.12 22.12 40.84 6.13
2373 2434 0.804933 GTTTAGCGATTCTCGGCCGT 60.805 55.000 27.15 5.04 40.84 5.68
2374 2435 0.526954 TTTAGCGATTCTCGGCCGTC 60.527 55.000 27.15 14.54 40.84 4.79
2375 2436 2.657484 TTAGCGATTCTCGGCCGTCG 62.657 60.000 26.12 26.12 40.84 5.12
2377 2438 3.884350 CGATTCTCGGCCGTCGGA 61.884 66.667 27.15 18.49 39.77 4.55
2378 2439 2.728817 GATTCTCGGCCGTCGGAT 59.271 61.111 27.15 17.55 39.77 4.18
2379 2440 1.371881 GATTCTCGGCCGTCGGATC 60.372 63.158 27.15 21.65 39.77 3.36
2380 2441 3.195591 ATTCTCGGCCGTCGGATCG 62.196 63.158 27.15 17.56 39.77 3.69
2382 2443 4.189188 CTCGGCCGTCGGATCGTT 62.189 66.667 27.15 0.00 39.77 3.85
2383 2444 3.695022 CTCGGCCGTCGGATCGTTT 62.695 63.158 27.15 0.00 39.77 3.60
2384 2445 2.102749 CGGCCGTCGGATCGTTTA 59.897 61.111 19.50 0.00 34.75 2.01
2385 2446 2.226225 CGGCCGTCGGATCGTTTAC 61.226 63.158 19.50 0.00 34.75 2.01
2386 2447 1.140375 GGCCGTCGGATCGTTTACT 59.860 57.895 17.49 0.00 0.00 2.24
2387 2448 0.459063 GGCCGTCGGATCGTTTACTT 60.459 55.000 17.49 0.00 0.00 2.24
2388 2449 0.643820 GCCGTCGGATCGTTTACTTG 59.356 55.000 17.49 0.00 0.00 3.16
2389 2450 1.733389 GCCGTCGGATCGTTTACTTGA 60.733 52.381 17.49 0.00 0.00 3.02
2390 2451 2.805845 CCGTCGGATCGTTTACTTGAT 58.194 47.619 4.91 0.00 0.00 2.57
2391 2452 2.534349 CCGTCGGATCGTTTACTTGATG 59.466 50.000 4.91 0.00 0.00 3.07
2392 2453 2.034842 CGTCGGATCGTTTACTTGATGC 60.035 50.000 0.00 0.00 0.00 3.91
2393 2454 2.628194 CGGATCGTTTACTTGATGCG 57.372 50.000 1.96 1.96 46.90 4.73
2394 2455 1.924524 CGGATCGTTTACTTGATGCGT 59.075 47.619 7.77 0.00 46.86 5.24
2395 2456 2.347452 CGGATCGTTTACTTGATGCGTT 59.653 45.455 7.77 0.00 46.86 4.84
2396 2457 3.541516 CGGATCGTTTACTTGATGCGTTC 60.542 47.826 7.77 0.00 46.86 3.95
2397 2458 3.617263 GGATCGTTTACTTGATGCGTTCT 59.383 43.478 0.00 0.00 0.00 3.01
2398 2459 4.492570 GGATCGTTTACTTGATGCGTTCTG 60.493 45.833 0.00 0.00 0.00 3.02
2399 2460 2.734606 TCGTTTACTTGATGCGTTCTGG 59.265 45.455 0.00 0.00 0.00 3.86
2400 2461 2.734606 CGTTTACTTGATGCGTTCTGGA 59.265 45.455 0.00 0.00 0.00 3.86
2401 2462 3.423123 CGTTTACTTGATGCGTTCTGGAC 60.423 47.826 0.00 0.00 0.00 4.02
2402 2463 2.380084 TACTTGATGCGTTCTGGACC 57.620 50.000 0.00 0.00 0.00 4.46
2403 2464 0.670546 ACTTGATGCGTTCTGGACCG 60.671 55.000 0.00 0.00 0.00 4.79
2404 2465 0.670546 CTTGATGCGTTCTGGACCGT 60.671 55.000 0.00 0.00 0.00 4.83
2405 2466 0.250124 TTGATGCGTTCTGGACCGTT 60.250 50.000 0.00 0.00 0.00 4.44
2406 2467 0.948623 TGATGCGTTCTGGACCGTTG 60.949 55.000 0.00 0.00 0.00 4.10
2407 2468 1.635663 GATGCGTTCTGGACCGTTGG 61.636 60.000 0.00 0.00 0.00 3.77
2408 2469 2.029964 GCGTTCTGGACCGTTGGA 59.970 61.111 0.00 0.00 0.00 3.53
2409 2470 1.375523 GCGTTCTGGACCGTTGGAT 60.376 57.895 0.00 0.00 0.00 3.41
2410 2471 0.953960 GCGTTCTGGACCGTTGGATT 60.954 55.000 0.00 0.00 0.00 3.01
2411 2472 0.796312 CGTTCTGGACCGTTGGATTG 59.204 55.000 0.00 0.00 0.00 2.67
2412 2473 1.606994 CGTTCTGGACCGTTGGATTGA 60.607 52.381 0.00 0.00 0.00 2.57
2413 2474 2.076863 GTTCTGGACCGTTGGATTGAG 58.923 52.381 0.00 0.00 0.00 3.02
2414 2475 0.036388 TCTGGACCGTTGGATTGAGC 60.036 55.000 0.00 0.00 0.00 4.26
2415 2476 0.036010 CTGGACCGTTGGATTGAGCT 60.036 55.000 0.00 0.00 0.00 4.09
2416 2477 0.036388 TGGACCGTTGGATTGAGCTC 60.036 55.000 6.82 6.82 0.00 4.09
2417 2478 0.744771 GGACCGTTGGATTGAGCTCC 60.745 60.000 12.15 0.00 35.74 4.70
2418 2479 0.744771 GACCGTTGGATTGAGCTCCC 60.745 60.000 12.15 5.86 34.12 4.30
2419 2480 1.815421 CCGTTGGATTGAGCTCCCG 60.815 63.158 12.15 2.11 34.12 5.14
2420 2481 1.815421 CGTTGGATTGAGCTCCCGG 60.815 63.158 12.15 0.00 34.12 5.73
2421 2482 1.602237 GTTGGATTGAGCTCCCGGA 59.398 57.895 12.15 0.00 34.12 5.14
2422 2483 0.181350 GTTGGATTGAGCTCCCGGAT 59.819 55.000 12.15 0.00 34.12 4.18
2423 2484 0.469917 TTGGATTGAGCTCCCGGATC 59.530 55.000 12.15 9.26 34.12 3.36
2424 2485 0.690744 TGGATTGAGCTCCCGGATCA 60.691 55.000 12.15 0.00 38.70 2.92
2425 2486 0.250081 GGATTGAGCTCCCGGATCAC 60.250 60.000 12.15 1.40 40.29 3.06
2426 2487 0.250081 GATTGAGCTCCCGGATCACC 60.250 60.000 12.15 0.00 40.29 4.02
2427 2488 0.692419 ATTGAGCTCCCGGATCACCT 60.692 55.000 12.15 0.00 40.29 4.00
2428 2489 1.617018 TTGAGCTCCCGGATCACCTG 61.617 60.000 12.15 0.00 40.29 4.00
2429 2490 3.453070 GAGCTCCCGGATCACCTGC 62.453 68.421 0.73 0.00 0.00 4.85
2430 2491 4.899239 GCTCCCGGATCACCTGCG 62.899 72.222 0.73 0.00 38.61 5.18
2431 2492 4.899239 CTCCCGGATCACCTGCGC 62.899 72.222 0.73 0.00 37.38 6.09
2452 2513 2.593725 CGGATCGACCCGGAGCTA 60.594 66.667 11.52 0.00 45.43 3.32
2453 2514 2.905807 CGGATCGACCCGGAGCTAC 61.906 68.421 11.52 0.00 45.43 3.58
2454 2515 1.528776 GGATCGACCCGGAGCTACT 60.529 63.158 0.73 0.00 0.00 2.57
2455 2516 1.655329 GATCGACCCGGAGCTACTG 59.345 63.158 0.73 0.00 0.00 2.74
2456 2517 2.409241 GATCGACCCGGAGCTACTGC 62.409 65.000 0.73 0.00 40.05 4.40
2472 2533 6.095947 GCTACTGCTACAATGAACAGTTAC 57.904 41.667 11.30 3.47 42.97 2.50
2473 2534 5.869888 GCTACTGCTACAATGAACAGTTACT 59.130 40.000 11.30 0.00 42.97 2.24
2474 2535 6.369065 GCTACTGCTACAATGAACAGTTACTT 59.631 38.462 11.30 0.00 42.97 2.24
2475 2536 6.787085 ACTGCTACAATGAACAGTTACTTC 57.213 37.500 0.00 0.00 40.35 3.01
2476 2537 5.701290 ACTGCTACAATGAACAGTTACTTCC 59.299 40.000 0.00 0.00 40.35 3.46
2477 2538 4.688879 TGCTACAATGAACAGTTACTTCCG 59.311 41.667 0.00 0.00 0.00 4.30
2478 2539 4.689345 GCTACAATGAACAGTTACTTCCGT 59.311 41.667 0.00 0.00 0.00 4.69
2479 2540 5.178809 GCTACAATGAACAGTTACTTCCGTT 59.821 40.000 0.00 0.00 0.00 4.44
2480 2541 6.293244 GCTACAATGAACAGTTACTTCCGTTT 60.293 38.462 0.00 0.00 0.00 3.60
2481 2542 6.056428 ACAATGAACAGTTACTTCCGTTTC 57.944 37.500 0.00 0.00 0.00 2.78
2482 2543 4.985044 ATGAACAGTTACTTCCGTTTCG 57.015 40.909 0.00 0.00 0.00 3.46
2483 2544 3.784338 TGAACAGTTACTTCCGTTTCGT 58.216 40.909 0.00 0.00 0.00 3.85
2484 2545 3.552699 TGAACAGTTACTTCCGTTTCGTG 59.447 43.478 0.00 0.00 0.00 4.35
2485 2546 1.862827 ACAGTTACTTCCGTTTCGTGC 59.137 47.619 0.00 0.00 0.00 5.34
2486 2547 1.193874 CAGTTACTTCCGTTTCGTGCC 59.806 52.381 0.00 0.00 0.00 5.01
2487 2548 1.202557 AGTTACTTCCGTTTCGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
2488 2549 1.070376 GTTACTTCCGTTTCGTGCCAC 60.070 52.381 0.00 0.00 0.00 5.01
2489 2550 0.600782 TACTTCCGTTTCGTGCCACC 60.601 55.000 0.00 0.00 0.00 4.61
2490 2551 2.950172 CTTCCGTTTCGTGCCACCG 61.950 63.158 0.00 0.00 0.00 4.94
2499 2560 3.795342 GTGCCACCGCGCGTAATT 61.795 61.111 29.95 6.86 38.08 1.40
2500 2561 3.492545 TGCCACCGCGCGTAATTC 61.493 61.111 29.95 13.67 38.08 2.17
2501 2562 4.232248 GCCACCGCGCGTAATTCC 62.232 66.667 29.95 7.85 0.00 3.01
2502 2563 2.816083 CCACCGCGCGTAATTCCA 60.816 61.111 29.95 0.00 0.00 3.53
2503 2564 2.701006 CACCGCGCGTAATTCCAG 59.299 61.111 29.95 13.09 0.00 3.86
2504 2565 3.192922 ACCGCGCGTAATTCCAGC 61.193 61.111 29.95 0.00 0.00 4.85
2509 2570 3.583086 GCGTAATTCCAGCGCCCC 61.583 66.667 2.29 0.00 44.67 5.80
2510 2571 2.900337 CGTAATTCCAGCGCCCCC 60.900 66.667 2.29 0.00 0.00 5.40
2511 2572 2.274104 GTAATTCCAGCGCCCCCA 59.726 61.111 2.29 0.00 0.00 4.96
2512 2573 2.119029 GTAATTCCAGCGCCCCCAC 61.119 63.158 2.29 0.00 0.00 4.61
2513 2574 2.607568 TAATTCCAGCGCCCCCACA 61.608 57.895 2.29 0.00 0.00 4.17
2514 2575 2.143575 TAATTCCAGCGCCCCCACAA 62.144 55.000 2.29 0.00 0.00 3.33
2515 2576 3.944250 ATTCCAGCGCCCCCACAAG 62.944 63.158 2.29 0.00 0.00 3.16
2533 2594 5.633182 CCACAAGGGTATTTTTGTCATTTCG 59.367 40.000 0.00 0.00 35.46 3.46
2534 2595 5.118510 CACAAGGGTATTTTTGTCATTTCGC 59.881 40.000 0.00 0.00 35.46 4.70
2535 2596 5.221342 ACAAGGGTATTTTTGTCATTTCGCA 60.221 36.000 0.00 0.00 32.32 5.10
2536 2597 4.805219 AGGGTATTTTTGTCATTTCGCAC 58.195 39.130 0.00 0.00 0.00 5.34
2537 2598 3.606346 GGGTATTTTTGTCATTTCGCACG 59.394 43.478 0.00 0.00 0.00 5.34
2538 2599 4.223659 GGTATTTTTGTCATTTCGCACGT 58.776 39.130 0.00 0.00 0.00 4.49
2539 2600 5.383958 GGTATTTTTGTCATTTCGCACGTA 58.616 37.500 0.00 0.00 0.00 3.57
2540 2601 5.506832 GGTATTTTTGTCATTTCGCACGTAG 59.493 40.000 0.00 0.00 0.00 3.51
2541 2602 3.529634 TTTTGTCATTTCGCACGTAGG 57.470 42.857 0.00 0.00 0.00 3.18
2542 2603 0.793861 TTGTCATTTCGCACGTAGGC 59.206 50.000 0.00 0.00 0.00 3.93
2556 2617 1.525619 CGTAGGCGTATAAAAGGCAGC 59.474 52.381 0.00 0.00 40.84 5.25
2557 2618 1.871676 GTAGGCGTATAAAAGGCAGCC 59.128 52.381 1.84 1.84 44.45 4.85
2558 2619 1.647084 GGCGTATAAAAGGCAGCCG 59.353 57.895 5.55 0.00 40.84 5.52
2559 2620 1.010013 GCGTATAAAAGGCAGCCGC 60.010 57.895 5.55 0.00 38.86 6.53
2560 2621 1.436983 GCGTATAAAAGGCAGCCGCT 61.437 55.000 5.55 0.00 38.86 5.52
2561 2622 0.582005 CGTATAAAAGGCAGCCGCTC 59.418 55.000 5.55 0.00 38.60 5.03
2562 2623 0.945099 GTATAAAAGGCAGCCGCTCC 59.055 55.000 5.55 0.00 38.60 4.70
2563 2624 0.179029 TATAAAAGGCAGCCGCTCCC 60.179 55.000 5.55 0.00 38.60 4.30
2564 2625 2.911221 ATAAAAGGCAGCCGCTCCCC 62.911 60.000 5.55 0.00 38.60 4.81
2580 2641 2.621070 TCCCCATGGAGATAACCTAGC 58.379 52.381 15.22 0.00 35.03 3.42
2581 2642 1.630878 CCCCATGGAGATAACCTAGCC 59.369 57.143 15.22 0.00 0.00 3.93
2582 2643 1.276421 CCCATGGAGATAACCTAGCCG 59.724 57.143 15.22 0.00 0.00 5.52
2583 2644 1.338200 CCATGGAGATAACCTAGCCGC 60.338 57.143 5.56 0.00 0.00 6.53
2584 2645 0.977395 ATGGAGATAACCTAGCCGCC 59.023 55.000 0.00 0.00 0.00 6.13
2585 2646 1.289380 GGAGATAACCTAGCCGCCG 59.711 63.158 0.00 0.00 0.00 6.46
2586 2647 1.373121 GAGATAACCTAGCCGCCGC 60.373 63.158 0.00 0.00 0.00 6.53
2587 2648 2.357154 GATAACCTAGCCGCCGCC 60.357 66.667 0.00 0.00 34.57 6.13
2588 2649 2.842936 ATAACCTAGCCGCCGCCT 60.843 61.111 0.00 0.00 34.57 5.52
2589 2650 2.766875 GATAACCTAGCCGCCGCCTC 62.767 65.000 0.00 0.00 34.57 4.70
2600 2661 4.200283 CCGCCTCCTCGAGCACTC 62.200 72.222 6.99 0.00 0.00 3.51
2601 2662 4.200283 CGCCTCCTCGAGCACTCC 62.200 72.222 6.99 0.00 0.00 3.85
2602 2663 3.844090 GCCTCCTCGAGCACTCCC 61.844 72.222 6.99 0.00 0.00 4.30
2603 2664 3.522731 CCTCCTCGAGCACTCCCG 61.523 72.222 6.99 0.00 0.00 5.14
2604 2665 4.200283 CTCCTCGAGCACTCCCGC 62.200 72.222 6.99 0.00 0.00 6.13
2606 2667 4.803426 CCTCGAGCACTCCCGCAC 62.803 72.222 6.99 0.00 0.00 5.34
2607 2668 3.753434 CTCGAGCACTCCCGCACT 61.753 66.667 0.00 0.00 0.00 4.40
2608 2669 3.691744 CTCGAGCACTCCCGCACTC 62.692 68.421 0.00 0.00 0.00 3.51
2651 2712 4.200283 CGCGCCCTCACCTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
2652 2713 2.757917 GCGCCCTCACCTCTCTCT 60.758 66.667 0.00 0.00 0.00 3.10
2653 2714 2.781158 GCGCCCTCACCTCTCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
2654 2715 2.124693 CGCCCTCACCTCTCTCTCC 61.125 68.421 0.00 0.00 0.00 3.71
2655 2716 1.760480 GCCCTCACCTCTCTCTCCC 60.760 68.421 0.00 0.00 0.00 4.30
2656 2717 1.075600 CCCTCACCTCTCTCTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
2657 2718 1.589399 CCCTCACCTCTCTCTCCCCT 61.589 65.000 0.00 0.00 0.00 4.79
2658 2719 0.106217 CCTCACCTCTCTCTCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
2659 2720 0.106217 CTCACCTCTCTCTCCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
2660 2721 0.851332 TCACCTCTCTCTCCCCTCCA 60.851 60.000 0.00 0.00 0.00 3.86
2661 2722 0.041833 CACCTCTCTCTCCCCTCCAA 59.958 60.000 0.00 0.00 0.00 3.53
2662 2723 0.793617 ACCTCTCTCTCCCCTCCAAA 59.206 55.000 0.00 0.00 0.00 3.28
2663 2724 1.199615 CCTCTCTCTCCCCTCCAAAC 58.800 60.000 0.00 0.00 0.00 2.93
2664 2725 1.199615 CTCTCTCTCCCCTCCAAACC 58.800 60.000 0.00 0.00 0.00 3.27
2665 2726 0.252742 TCTCTCTCCCCTCCAAACCC 60.253 60.000 0.00 0.00 0.00 4.11
2666 2727 0.252927 CTCTCTCCCCTCCAAACCCT 60.253 60.000 0.00 0.00 0.00 4.34
2667 2728 1.008449 CTCTCTCCCCTCCAAACCCTA 59.992 57.143 0.00 0.00 0.00 3.53
2668 2729 1.205055 CTCTCCCCTCCAAACCCTAC 58.795 60.000 0.00 0.00 0.00 3.18
2669 2730 0.253020 TCTCCCCTCCAAACCCTACC 60.253 60.000 0.00 0.00 0.00 3.18
2670 2731 1.230050 TCCCCTCCAAACCCTACCC 60.230 63.158 0.00 0.00 0.00 3.69
2671 2732 2.314215 CCCCTCCAAACCCTACCCC 61.314 68.421 0.00 0.00 0.00 4.95
2672 2733 2.676265 CCCTCCAAACCCTACCCCG 61.676 68.421 0.00 0.00 0.00 5.73
2673 2734 2.271173 CTCCAAACCCTACCCCGC 59.729 66.667 0.00 0.00 0.00 6.13
2674 2735 3.332385 TCCAAACCCTACCCCGCC 61.332 66.667 0.00 0.00 0.00 6.13
2675 2736 4.789123 CCAAACCCTACCCCGCCG 62.789 72.222 0.00 0.00 0.00 6.46
2711 2772 4.512914 GCACCCATCCCCTGCCTC 62.513 72.222 0.00 0.00 0.00 4.70
2712 2773 3.016971 CACCCATCCCCTGCCTCA 61.017 66.667 0.00 0.00 0.00 3.86
2713 2774 3.017581 ACCCATCCCCTGCCTCAC 61.018 66.667 0.00 0.00 0.00 3.51
2714 2775 4.181010 CCCATCCCCTGCCTCACG 62.181 72.222 0.00 0.00 0.00 4.35
2715 2776 4.864334 CCATCCCCTGCCTCACGC 62.864 72.222 0.00 0.00 38.31 5.34
2716 2777 4.864334 CATCCCCTGCCTCACGCC 62.864 72.222 0.00 0.00 36.24 5.68
2722 2783 4.415150 CTGCCTCACGCCACCCAT 62.415 66.667 0.00 0.00 36.24 4.00
2723 2784 4.408821 TGCCTCACGCCACCCATC 62.409 66.667 0.00 0.00 36.24 3.51
2724 2785 4.101448 GCCTCACGCCACCCATCT 62.101 66.667 0.00 0.00 0.00 2.90
2725 2786 2.731571 GCCTCACGCCACCCATCTA 61.732 63.158 0.00 0.00 0.00 1.98
2726 2787 1.443407 CCTCACGCCACCCATCTAG 59.557 63.158 0.00 0.00 0.00 2.43
2727 2788 1.043116 CCTCACGCCACCCATCTAGA 61.043 60.000 0.00 0.00 0.00 2.43
2728 2789 0.387202 CTCACGCCACCCATCTAGAG 59.613 60.000 0.00 0.00 0.00 2.43
2729 2790 0.033503 TCACGCCACCCATCTAGAGA 60.034 55.000 0.00 0.00 0.00 3.10
2730 2791 0.387202 CACGCCACCCATCTAGAGAG 59.613 60.000 0.00 0.00 0.00 3.20
2731 2792 0.259065 ACGCCACCCATCTAGAGAGA 59.741 55.000 0.00 0.00 35.71 3.10
2732 2793 1.133325 ACGCCACCCATCTAGAGAGAT 60.133 52.381 0.00 0.00 43.63 2.75
2739 2800 3.372557 ATCTAGAGAGATGGGGCCG 57.627 57.895 0.00 0.00 41.12 6.13
2740 2801 0.902516 ATCTAGAGAGATGGGGCCGC 60.903 60.000 14.01 14.01 41.12 6.53
2741 2802 2.912542 TAGAGAGATGGGGCCGCG 60.913 66.667 15.95 0.00 0.00 6.46
2772 2833 4.380628 ACGTGCCGTCGTCTCGTC 62.381 66.667 0.00 0.00 40.04 4.20
2773 2834 4.086178 CGTGCCGTCGTCTCGTCT 62.086 66.667 0.00 0.00 0.00 4.18
2774 2835 2.254651 GTGCCGTCGTCTCGTCTT 59.745 61.111 0.00 0.00 0.00 3.01
2775 2836 1.796749 GTGCCGTCGTCTCGTCTTC 60.797 63.158 0.00 0.00 0.00 2.87
2776 2837 1.964891 TGCCGTCGTCTCGTCTTCT 60.965 57.895 0.00 0.00 0.00 2.85
2777 2838 1.512310 GCCGTCGTCTCGTCTTCTG 60.512 63.158 0.00 0.00 0.00 3.02
2778 2839 1.512310 CCGTCGTCTCGTCTTCTGC 60.512 63.158 0.00 0.00 0.00 4.26
2779 2840 1.512310 CGTCGTCTCGTCTTCTGCC 60.512 63.158 0.00 0.00 0.00 4.85
2780 2841 1.512310 GTCGTCTCGTCTTCTGCCG 60.512 63.158 0.00 0.00 0.00 5.69
2781 2842 2.876645 CGTCTCGTCTTCTGCCGC 60.877 66.667 0.00 0.00 0.00 6.53
2782 2843 2.876645 GTCTCGTCTTCTGCCGCG 60.877 66.667 0.00 0.00 0.00 6.46
2783 2844 4.778415 TCTCGTCTTCTGCCGCGC 62.778 66.667 0.00 0.00 0.00 6.86
2841 2902 4.554036 GCACCCATCCTCGGCCTC 62.554 72.222 0.00 0.00 0.00 4.70
2842 2903 3.083349 CACCCATCCTCGGCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
2843 2904 3.083997 ACCCATCCTCGGCCTCAC 61.084 66.667 0.00 0.00 0.00 3.51
2844 2905 3.083349 CCCATCCTCGGCCTCACA 61.083 66.667 0.00 0.00 0.00 3.58
2845 2906 2.187946 CCATCCTCGGCCTCACAC 59.812 66.667 0.00 0.00 0.00 3.82
2846 2907 2.187946 CATCCTCGGCCTCACACC 59.812 66.667 0.00 0.00 0.00 4.16
2847 2908 2.284625 ATCCTCGGCCTCACACCA 60.285 61.111 0.00 0.00 0.00 4.17
2848 2909 2.660064 ATCCTCGGCCTCACACCAC 61.660 63.158 0.00 0.00 0.00 4.16
2849 2910 4.394712 CCTCGGCCTCACACCACC 62.395 72.222 0.00 0.00 0.00 4.61
2850 2911 4.394712 CTCGGCCTCACACCACCC 62.395 72.222 0.00 0.00 0.00 4.61
2852 2913 4.033776 CGGCCTCACACCACCCAT 62.034 66.667 0.00 0.00 0.00 4.00
2853 2914 2.044946 GGCCTCACACCACCCATC 60.045 66.667 0.00 0.00 0.00 3.51
2854 2915 2.606587 GGCCTCACACCACCCATCT 61.607 63.158 0.00 0.00 0.00 2.90
2855 2916 1.271840 GGCCTCACACCACCCATCTA 61.272 60.000 0.00 0.00 0.00 1.98
2856 2917 0.179000 GCCTCACACCACCCATCTAG 59.821 60.000 0.00 0.00 0.00 2.43
2857 2918 1.866015 CCTCACACCACCCATCTAGA 58.134 55.000 0.00 0.00 0.00 2.43
2858 2919 1.759445 CCTCACACCACCCATCTAGAG 59.241 57.143 0.00 0.00 0.00 2.43
2859 2920 2.624293 CCTCACACCACCCATCTAGAGA 60.624 54.545 0.00 0.00 0.00 3.10
2860 2921 2.692557 CTCACACCACCCATCTAGAGAG 59.307 54.545 0.00 0.00 0.00 3.20
2861 2922 2.311841 TCACACCACCCATCTAGAGAGA 59.688 50.000 0.00 0.00 35.71 3.10
2862 2923 3.052566 TCACACCACCCATCTAGAGAGAT 60.053 47.826 0.00 0.00 43.63 2.75
2869 2930 3.805215 ATCTAGAGAGATGGGGGCC 57.195 57.895 0.00 0.00 41.12 5.80
2870 2931 0.870313 ATCTAGAGAGATGGGGGCCA 59.130 55.000 4.39 0.00 41.12 5.36
2871 2932 0.105453 TCTAGAGAGATGGGGGCCAC 60.105 60.000 4.39 0.17 35.80 5.01
2872 2933 1.457643 TAGAGAGATGGGGGCCACG 60.458 63.158 4.39 0.00 35.80 4.94
2873 2934 2.946988 TAGAGAGATGGGGGCCACGG 62.947 65.000 4.39 0.00 35.80 4.94
2881 2942 4.489771 GGGGCCACGGGTGATGAG 62.490 72.222 4.39 0.00 0.00 2.90
2882 2943 4.489771 GGGCCACGGGTGATGAGG 62.490 72.222 4.39 0.00 0.00 3.86
2885 2946 4.838152 CCACGGGTGATGAGGCCG 62.838 72.222 0.00 0.00 0.00 6.13
2886 2947 4.838152 CACGGGTGATGAGGCCGG 62.838 72.222 0.00 0.00 0.00 6.13
2891 2952 4.148825 GTGATGAGGCCGGCGTCT 62.149 66.667 39.61 28.39 0.00 4.18
2892 2953 3.838271 TGATGAGGCCGGCGTCTC 61.838 66.667 39.61 32.71 0.00 3.36
2893 2954 3.838271 GATGAGGCCGGCGTCTCA 61.838 66.667 39.61 34.68 43.15 3.27
2894 2955 3.157252 ATGAGGCCGGCGTCTCAT 61.157 61.111 39.61 35.15 43.52 2.90
2895 2956 3.157217 ATGAGGCCGGCGTCTCATC 62.157 63.158 39.61 21.39 44.63 2.92
2896 2957 4.933064 GAGGCCGGCGTCTCATCG 62.933 72.222 35.56 0.00 0.00 3.84
2900 2961 4.570663 CCGGCGTCTCATCGTCCC 62.571 72.222 6.01 0.00 31.35 4.46
2901 2962 4.907034 CGGCGTCTCATCGTCCCG 62.907 72.222 0.00 0.00 32.52 5.14
2902 2963 3.823330 GGCGTCTCATCGTCCCGT 61.823 66.667 0.00 0.00 0.00 5.28
2903 2964 2.278013 GCGTCTCATCGTCCCGTC 60.278 66.667 0.00 0.00 0.00 4.79
2904 2965 2.762234 GCGTCTCATCGTCCCGTCT 61.762 63.158 0.00 0.00 0.00 4.18
2905 2966 1.801332 CGTCTCATCGTCCCGTCTT 59.199 57.895 0.00 0.00 0.00 3.01
2906 2967 0.248134 CGTCTCATCGTCCCGTCTTC 60.248 60.000 0.00 0.00 0.00 2.87
2907 2968 1.096416 GTCTCATCGTCCCGTCTTCT 58.904 55.000 0.00 0.00 0.00 2.85
2908 2969 1.095600 TCTCATCGTCCCGTCTTCTG 58.904 55.000 0.00 0.00 0.00 3.02
2909 2970 0.526524 CTCATCGTCCCGTCTTCTGC 60.527 60.000 0.00 0.00 0.00 4.26
2910 2971 1.874019 CATCGTCCCGTCTTCTGCG 60.874 63.158 0.00 0.00 0.00 5.18
2911 2972 2.044555 ATCGTCCCGTCTTCTGCGA 61.045 57.895 0.00 0.00 0.00 5.10
2912 2973 1.994507 ATCGTCCCGTCTTCTGCGAG 61.995 60.000 0.00 0.00 0.00 5.03
2913 2974 2.182030 GTCCCGTCTTCTGCGAGG 59.818 66.667 0.00 0.00 0.00 4.63
2914 2975 2.282958 TCCCGTCTTCTGCGAGGT 60.283 61.111 0.00 0.00 0.00 3.85
2915 2976 2.182030 CCCGTCTTCTGCGAGGTC 59.818 66.667 0.00 0.00 0.00 3.85
2916 2977 2.202492 CCGTCTTCTGCGAGGTCG 60.202 66.667 0.00 0.00 43.27 4.79
2917 2978 2.687805 CCGTCTTCTGCGAGGTCGA 61.688 63.158 2.94 0.00 43.02 4.20
2918 2979 1.226156 CGTCTTCTGCGAGGTCGAG 60.226 63.158 2.94 0.00 43.02 4.04
2919 2980 1.137825 GTCTTCTGCGAGGTCGAGG 59.862 63.158 2.94 0.00 43.02 4.63
2920 2981 1.002502 TCTTCTGCGAGGTCGAGGA 60.003 57.895 2.94 0.00 43.02 3.71
2921 2982 1.027255 TCTTCTGCGAGGTCGAGGAG 61.027 60.000 2.94 2.64 43.02 3.69
2922 2983 1.002502 TTCTGCGAGGTCGAGGAGA 60.003 57.895 2.94 0.00 43.02 3.71
2923 2984 1.027255 TTCTGCGAGGTCGAGGAGAG 61.027 60.000 2.94 0.00 43.02 3.20
2930 2991 1.443828 GGTCGAGGAGAGCCAATCC 59.556 63.158 0.00 0.00 41.28 3.01
2931 2992 1.443828 GTCGAGGAGAGCCAATCCC 59.556 63.158 0.00 0.00 37.57 3.85
2932 2993 1.001631 TCGAGGAGAGCCAATCCCA 59.998 57.895 0.00 0.00 37.57 4.37
2933 2994 1.144936 CGAGGAGAGCCAATCCCAC 59.855 63.158 0.00 0.00 37.57 4.61
2934 2995 1.529309 GAGGAGAGCCAATCCCACC 59.471 63.158 0.00 0.00 37.57 4.61
2935 2996 0.985490 GAGGAGAGCCAATCCCACCT 60.985 60.000 0.00 0.00 37.57 4.00
2936 2997 0.985490 AGGAGAGCCAATCCCACCTC 60.985 60.000 0.00 0.00 37.57 3.85
2937 2998 1.144936 GAGAGCCAATCCCACCTCG 59.855 63.158 0.00 0.00 0.00 4.63
2938 2999 2.514824 GAGCCAATCCCACCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
2939 3000 4.115199 AGCCAATCCCACCTCGCC 62.115 66.667 0.00 0.00 0.00 5.54
3006 3067 4.302622 CCCCCTCGATCTGGATGT 57.697 61.111 3.53 0.00 0.00 3.06
3007 3068 2.053618 CCCCCTCGATCTGGATGTC 58.946 63.158 3.53 0.00 0.00 3.06
3008 3069 1.662608 CCCCTCGATCTGGATGTCG 59.337 63.158 3.53 0.00 39.11 4.35
3009 3070 1.006805 CCCTCGATCTGGATGTCGC 60.007 63.158 3.53 0.00 37.74 5.19
3010 3071 1.006805 CCTCGATCTGGATGTCGCC 60.007 63.158 0.00 0.00 37.74 5.54
3011 3072 1.371022 CTCGATCTGGATGTCGCCG 60.371 63.158 0.00 0.00 37.74 6.46
3012 3073 2.064723 CTCGATCTGGATGTCGCCGT 62.065 60.000 0.00 0.00 37.74 5.68
3013 3074 1.658717 CGATCTGGATGTCGCCGTC 60.659 63.158 0.00 0.00 0.00 4.79
3014 3075 1.658717 GATCTGGATGTCGCCGTCG 60.659 63.158 0.00 0.00 0.00 5.12
3015 3076 3.774959 ATCTGGATGTCGCCGTCGC 62.775 63.158 0.00 0.00 35.26 5.19
3032 3093 2.989253 CCGTGGTTTGCCCCCTTC 60.989 66.667 0.00 0.00 0.00 3.46
3033 3094 3.361977 CGTGGTTTGCCCCCTTCG 61.362 66.667 0.00 0.00 0.00 3.79
3034 3095 3.680786 GTGGTTTGCCCCCTTCGC 61.681 66.667 0.00 0.00 0.00 4.70
3035 3096 4.986708 TGGTTTGCCCCCTTCGCC 62.987 66.667 0.00 0.00 0.00 5.54
3036 3097 4.678743 GGTTTGCCCCCTTCGCCT 62.679 66.667 0.00 0.00 0.00 5.52
3037 3098 3.062466 GTTTGCCCCCTTCGCCTC 61.062 66.667 0.00 0.00 0.00 4.70
3038 3099 3.256960 TTTGCCCCCTTCGCCTCT 61.257 61.111 0.00 0.00 0.00 3.69
3039 3100 2.840753 TTTGCCCCCTTCGCCTCTT 61.841 57.895 0.00 0.00 0.00 2.85
3040 3101 2.764637 TTTGCCCCCTTCGCCTCTTC 62.765 60.000 0.00 0.00 0.00 2.87
3041 3102 3.403558 GCCCCCTTCGCCTCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
3042 3103 2.064581 GCCCCCTTCGCCTCTTCTA 61.065 63.158 0.00 0.00 0.00 2.10
3043 3104 1.411651 GCCCCCTTCGCCTCTTCTAT 61.412 60.000 0.00 0.00 0.00 1.98
3044 3105 0.682292 CCCCCTTCGCCTCTTCTATC 59.318 60.000 0.00 0.00 0.00 2.08
3045 3106 0.682292 CCCCTTCGCCTCTTCTATCC 59.318 60.000 0.00 0.00 0.00 2.59
3046 3107 1.414158 CCCTTCGCCTCTTCTATCCA 58.586 55.000 0.00 0.00 0.00 3.41
3047 3108 1.342819 CCCTTCGCCTCTTCTATCCAG 59.657 57.143 0.00 0.00 0.00 3.86
3048 3109 1.270041 CCTTCGCCTCTTCTATCCAGC 60.270 57.143 0.00 0.00 0.00 4.85
3049 3110 0.753262 TTCGCCTCTTCTATCCAGCC 59.247 55.000 0.00 0.00 0.00 4.85
3050 3111 1.006805 CGCCTCTTCTATCCAGCCG 60.007 63.158 0.00 0.00 0.00 5.52
3051 3112 1.739338 CGCCTCTTCTATCCAGCCGT 61.739 60.000 0.00 0.00 0.00 5.68
3052 3113 0.249657 GCCTCTTCTATCCAGCCGTG 60.250 60.000 0.00 0.00 0.00 4.94
3053 3114 1.115467 CCTCTTCTATCCAGCCGTGT 58.885 55.000 0.00 0.00 0.00 4.49
3054 3115 2.307768 CCTCTTCTATCCAGCCGTGTA 58.692 52.381 0.00 0.00 0.00 2.90
3055 3116 2.693591 CCTCTTCTATCCAGCCGTGTAA 59.306 50.000 0.00 0.00 0.00 2.41
3056 3117 3.491104 CCTCTTCTATCCAGCCGTGTAAC 60.491 52.174 0.00 0.00 0.00 2.50
3057 3118 3.362706 TCTTCTATCCAGCCGTGTAACT 58.637 45.455 0.00 0.00 31.75 2.24
3058 3119 3.380637 TCTTCTATCCAGCCGTGTAACTC 59.619 47.826 0.00 0.00 31.75 3.01
3059 3120 1.674441 TCTATCCAGCCGTGTAACTCG 59.326 52.381 0.00 0.00 31.75 4.18
3060 3121 1.674441 CTATCCAGCCGTGTAACTCGA 59.326 52.381 0.00 0.00 31.75 4.04
3061 3122 0.456221 ATCCAGCCGTGTAACTCGAG 59.544 55.000 11.84 11.84 31.75 4.04
3062 3123 1.805945 CCAGCCGTGTAACTCGAGC 60.806 63.158 13.61 0.00 31.75 5.03
3063 3124 1.805945 CAGCCGTGTAACTCGAGCC 60.806 63.158 13.61 0.96 31.75 4.70
3064 3125 2.879462 GCCGTGTAACTCGAGCCG 60.879 66.667 13.61 7.17 31.75 5.52
3065 3126 2.202570 CCGTGTAACTCGAGCCGG 60.203 66.667 13.61 12.47 31.75 6.13
3066 3127 2.879462 CGTGTAACTCGAGCCGGC 60.879 66.667 21.89 21.89 31.75 6.13
3067 3128 2.260434 GTGTAACTCGAGCCGGCA 59.740 61.111 31.54 7.07 0.00 5.69
3068 3129 1.373748 GTGTAACTCGAGCCGGCAA 60.374 57.895 31.54 12.89 0.00 4.52
3069 3130 0.739813 GTGTAACTCGAGCCGGCAAT 60.740 55.000 31.54 9.09 0.00 3.56
3070 3131 0.818938 TGTAACTCGAGCCGGCAATA 59.181 50.000 31.54 12.07 0.00 1.90
3071 3132 1.411246 TGTAACTCGAGCCGGCAATAT 59.589 47.619 31.54 7.63 0.00 1.28
3072 3133 2.059541 GTAACTCGAGCCGGCAATATC 58.940 52.381 31.54 16.69 0.00 1.63
3073 3134 0.249911 AACTCGAGCCGGCAATATCC 60.250 55.000 31.54 8.97 0.00 2.59
3074 3135 1.367471 CTCGAGCCGGCAATATCCA 59.633 57.895 31.54 4.68 0.00 3.41
3075 3136 0.668706 CTCGAGCCGGCAATATCCAG 60.669 60.000 31.54 11.61 0.00 3.86
3076 3137 2.320587 CGAGCCGGCAATATCCAGC 61.321 63.158 31.54 4.78 0.00 4.85
3077 3138 1.227943 GAGCCGGCAATATCCAGCA 60.228 57.895 31.54 0.00 32.01 4.41
3078 3139 0.819259 GAGCCGGCAATATCCAGCAA 60.819 55.000 31.54 0.00 32.01 3.91
3079 3140 0.178981 AGCCGGCAATATCCAGCAAT 60.179 50.000 31.54 0.00 32.01 3.56
3080 3141 0.038892 GCCGGCAATATCCAGCAATG 60.039 55.000 24.80 0.00 30.03 2.82
3081 3142 0.599558 CCGGCAATATCCAGCAATGG 59.400 55.000 0.00 0.00 0.00 3.16
3082 3143 0.038892 CGGCAATATCCAGCAATGGC 60.039 55.000 0.00 0.00 41.61 4.40
3103 3164 3.567473 GCGGTCAACTCTGCCTTC 58.433 61.111 0.00 0.00 34.02 3.46
3104 3165 2.035442 GCGGTCAACTCTGCCTTCC 61.035 63.158 0.00 0.00 34.02 3.46
3105 3166 1.376037 CGGTCAACTCTGCCTTCCC 60.376 63.158 0.00 0.00 0.00 3.97
3106 3167 1.376037 GGTCAACTCTGCCTTCCCG 60.376 63.158 0.00 0.00 0.00 5.14
3107 3168 1.671742 GTCAACTCTGCCTTCCCGA 59.328 57.895 0.00 0.00 0.00 5.14
3108 3169 0.390472 GTCAACTCTGCCTTCCCGAG 60.390 60.000 0.00 0.00 0.00 4.63
3109 3170 1.743252 CAACTCTGCCTTCCCGAGC 60.743 63.158 0.00 0.00 0.00 5.03
3110 3171 2.960688 AACTCTGCCTTCCCGAGCC 61.961 63.158 0.00 0.00 0.00 4.70
3111 3172 4.168291 CTCTGCCTTCCCGAGCCC 62.168 72.222 0.00 0.00 0.00 5.19
3117 3178 4.194720 CTTCCCGAGCCCGACGAG 62.195 72.222 0.00 0.00 38.22 4.18
3118 3179 4.728110 TTCCCGAGCCCGACGAGA 62.728 66.667 0.00 0.00 38.22 4.04
3119 3180 4.728110 TCCCGAGCCCGACGAGAA 62.728 66.667 0.00 0.00 38.22 2.87
3120 3181 4.194720 CCCGAGCCCGACGAGAAG 62.195 72.222 0.00 0.00 38.22 2.85
3121 3182 4.194720 CCGAGCCCGACGAGAAGG 62.195 72.222 0.00 0.00 38.22 3.46
3126 3187 2.264794 CCCGACGAGAAGGGGTTG 59.735 66.667 0.00 0.00 43.90 3.77
3127 3188 2.434359 CCGACGAGAAGGGGTTGC 60.434 66.667 0.00 0.00 0.00 4.17
3128 3189 2.809601 CGACGAGAAGGGGTTGCG 60.810 66.667 0.00 0.00 0.00 4.85
3129 3190 3.119096 GACGAGAAGGGGTTGCGC 61.119 66.667 0.00 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.930135 AGAAAGACCTCAAACACAGTGTAT 58.070 37.500 6.63 0.00 0.00 2.29
141 144 3.368190 CTGCTGAGAGCGGGGACAG 62.368 68.421 0.00 0.00 46.26 3.51
148 151 1.806351 CTGTCAGCTGCTGAGAGCG 60.806 63.158 34.38 19.40 46.26 5.03
159 162 1.302033 CAGTGACCCACCTGTCAGC 60.302 63.158 0.00 0.00 45.40 4.26
195 198 2.106683 AAACGCATGTCTAGCCCGC 61.107 57.895 0.00 0.00 0.00 6.13
200 203 6.479990 TCATTCTAATCCAAACGCATGTCTAG 59.520 38.462 0.00 0.00 0.00 2.43
205 208 4.790766 GCCTCATTCTAATCCAAACGCATG 60.791 45.833 0.00 0.00 0.00 4.06
206 209 3.316308 GCCTCATTCTAATCCAAACGCAT 59.684 43.478 0.00 0.00 0.00 4.73
208 211 2.682856 TGCCTCATTCTAATCCAAACGC 59.317 45.455 0.00 0.00 0.00 4.84
211 214 3.278574 CGGTGCCTCATTCTAATCCAAA 58.721 45.455 0.00 0.00 0.00 3.28
212 215 2.238646 ACGGTGCCTCATTCTAATCCAA 59.761 45.455 0.00 0.00 0.00 3.53
213 216 1.837439 ACGGTGCCTCATTCTAATCCA 59.163 47.619 0.00 0.00 0.00 3.41
223 227 1.295357 CGTGCAAATACGGTGCCTCA 61.295 55.000 0.00 0.00 41.49 3.86
232 236 0.878416 TTGTCTGGCCGTGCAAATAC 59.122 50.000 0.00 0.00 0.00 1.89
233 237 1.164411 CTTGTCTGGCCGTGCAAATA 58.836 50.000 0.00 0.00 0.00 1.40
238 242 0.948678 TTAAACTTGTCTGGCCGTGC 59.051 50.000 0.00 0.00 0.00 5.34
287 291 2.987413 TGCATGTTCGGTTTGATGTC 57.013 45.000 0.00 0.00 0.00 3.06
307 311 3.644966 TGAAGGTGGTTCAACTTGTCT 57.355 42.857 2.67 0.00 41.88 3.41
318 322 8.603304 ACTAGAGTTAAATACATTGAAGGTGGT 58.397 33.333 0.00 0.00 0.00 4.16
319 323 9.099454 GACTAGAGTTAAATACATTGAAGGTGG 57.901 37.037 0.00 0.00 0.00 4.61
340 344 1.366679 TGTCTACGCACTCCGACTAG 58.633 55.000 0.00 0.00 41.02 2.57
343 347 1.546834 GAATGTCTACGCACTCCGAC 58.453 55.000 0.00 0.00 41.02 4.79
438 442 0.605589 GGGAGAGATGGCCAGTATCG 59.394 60.000 13.05 0.00 0.00 2.92
545 554 2.186532 TCGATCGGTCAGATAGAGGG 57.813 55.000 16.41 0.00 40.26 4.30
607 627 2.608752 GCATATACGTACGGTGGAAGGG 60.609 54.545 21.06 2.37 0.00 3.95
615 635 2.073117 TGCCATGCATATACGTACGG 57.927 50.000 21.06 1.82 31.71 4.02
660 680 4.776795 TTTTCATTTAGAAAGACGGCCC 57.223 40.909 0.00 0.00 46.24 5.80
810 852 3.178046 GAGGAGGAGGAGAAGAAAGGTT 58.822 50.000 0.00 0.00 0.00 3.50
1043 1091 2.677289 CCCATCAGGCTCAGCAGGT 61.677 63.158 0.00 0.00 0.00 4.00
1140 1188 4.096003 CCCGGGGACACGAGCAAT 62.096 66.667 14.71 0.00 35.47 3.56
1281 1338 3.832720 CTCGATCGGCTCCTTCGCC 62.833 68.421 16.41 0.00 46.68 5.54
1434 1491 2.927477 GTTCAGCGACCGATTGATTGTA 59.073 45.455 0.00 0.00 0.00 2.41
1438 1495 1.645034 CAGTTCAGCGACCGATTGAT 58.355 50.000 0.00 0.00 0.00 2.57
1467 1524 0.870393 ATTGCTCGTGTCACTTGCAG 59.130 50.000 15.75 2.96 35.02 4.41
1592 1649 1.584175 GATCTCACCAGCTCTGCATG 58.416 55.000 0.00 0.00 0.00 4.06
1643 1700 2.672996 GCGCACCTTGACCACCAT 60.673 61.111 0.30 0.00 0.00 3.55
1692 1749 2.743928 GGAGCACCGCCTCAAGTG 60.744 66.667 0.00 0.00 37.05 3.16
1746 1803 2.680352 AGCACCACGACCGGATCT 60.680 61.111 9.46 0.00 0.00 2.75
1814 1871 1.914531 ATTACGTTTTCCCGCGCACC 61.915 55.000 8.75 0.00 0.00 5.01
1821 1878 4.931601 ACTAAAGTCGGATTACGTTTTCCC 59.068 41.667 10.01 0.00 44.69 3.97
1827 1884 5.570589 CGAAAGAACTAAAGTCGGATTACGT 59.429 40.000 0.00 0.00 44.69 3.57
1865 1922 3.282021 ACGTAGCTTTCGGGTAGTGATA 58.718 45.455 13.80 0.00 0.00 2.15
1870 1927 2.848302 CGTTAACGTAGCTTTCGGGTAG 59.152 50.000 19.75 0.00 34.11 3.18
1872 1929 1.669795 CCGTTAACGTAGCTTTCGGGT 60.670 52.381 25.15 5.66 37.74 5.28
1926 1983 2.035449 ACGTTGACTCATTCTGACCGAA 59.965 45.455 0.00 0.00 35.78 4.30
2015 2072 1.593006 GTTATTCGCATGTCCACCTCG 59.407 52.381 0.00 0.00 0.00 4.63
2020 2077 3.428725 GGCATTTGTTATTCGCATGTCCA 60.429 43.478 0.00 0.00 0.00 4.02
2021 2078 3.115554 GGCATTTGTTATTCGCATGTCC 58.884 45.455 0.00 0.00 0.00 4.02
2051 2108 2.480244 GCCGGATTTGATTTCCTCAAGC 60.480 50.000 5.05 0.00 44.48 4.01
2085 2142 0.670546 TTGGAGCTACGCTTCACTGC 60.671 55.000 0.00 0.00 44.65 4.40
2088 2145 1.797025 AAGTTGGAGCTACGCTTCAC 58.203 50.000 0.00 0.00 44.65 3.18
2132 2189 5.521906 TCCTAGTACATCAACTCATGAGC 57.478 43.478 22.83 3.66 42.53 4.26
2135 2192 7.928167 TGCTATTTCCTAGTACATCAACTCATG 59.072 37.037 0.00 0.00 0.00 3.07
2152 2213 7.068716 AGTGAATTAAAGGGTGATGCTATTTCC 59.931 37.037 0.00 0.00 0.00 3.13
2159 2220 6.498304 CATGTAGTGAATTAAAGGGTGATGC 58.502 40.000 0.00 0.00 0.00 3.91
2165 2226 4.580580 GGGAGCATGTAGTGAATTAAAGGG 59.419 45.833 0.00 0.00 0.00 3.95
2180 2241 4.063689 GTCTTCACATCATAGGGAGCATG 58.936 47.826 0.00 0.00 0.00 4.06
2184 2245 4.222336 AGAGGTCTTCACATCATAGGGAG 58.778 47.826 0.00 0.00 35.67 4.30
2185 2246 4.219115 GAGAGGTCTTCACATCATAGGGA 58.781 47.826 0.00 0.00 35.67 4.20
2201 2262 3.902881 CCTCTATTGCTTGTGAGAGGT 57.097 47.619 8.37 0.00 46.80 3.85
2203 2264 4.199432 ACACCTCTATTGCTTGTGAGAG 57.801 45.455 0.00 0.00 36.08 3.20
2204 2265 4.526650 TGTACACCTCTATTGCTTGTGAGA 59.473 41.667 0.00 0.00 0.00 3.27
2243 2304 3.000078 CGATGACCGAGTTAAAATCGTGG 60.000 47.826 9.67 0.26 41.76 4.94
2246 2307 4.103357 AGACGATGACCGAGTTAAAATCG 58.897 43.478 4.72 4.72 41.87 3.34
2259 2320 1.139095 GACCCACCGAGACGATGAC 59.861 63.158 0.00 0.00 0.00 3.06
2260 2321 2.050350 GGACCCACCGAGACGATGA 61.050 63.158 0.00 0.00 0.00 2.92
2264 2325 2.580601 AAAGGGACCCACCGAGACG 61.581 63.158 14.60 0.00 40.11 4.18
2269 2330 2.033602 GACCAAAGGGACCCACCG 59.966 66.667 14.60 0.00 40.11 4.94
2271 2332 0.537371 CAGTGACCAAAGGGACCCAC 60.537 60.000 14.60 0.00 38.05 4.61
2275 2336 0.883833 CATGCAGTGACCAAAGGGAC 59.116 55.000 0.00 0.00 38.05 4.46
2288 2349 6.688637 TGACCAGAATAAAATCTCATGCAG 57.311 37.500 0.00 0.00 0.00 4.41
2305 2366 7.575414 ACTAACATAGTAGTCTGATGACCAG 57.425 40.000 0.00 0.00 43.91 4.00
2313 2374 7.093902 TGTTCTCCCAACTAACATAGTAGTCTG 60.094 40.741 0.00 0.00 38.26 3.51
2314 2375 6.952358 TGTTCTCCCAACTAACATAGTAGTCT 59.048 38.462 0.00 0.00 38.26 3.24
2315 2376 7.166691 TGTTCTCCCAACTAACATAGTAGTC 57.833 40.000 0.00 0.00 38.26 2.59
2316 2377 7.399191 TCATGTTCTCCCAACTAACATAGTAGT 59.601 37.037 0.00 0.00 40.83 2.73
2317 2378 7.782049 TCATGTTCTCCCAACTAACATAGTAG 58.218 38.462 0.00 0.00 40.83 2.57
2318 2379 7.632898 GCTCATGTTCTCCCAACTAACATAGTA 60.633 40.741 0.00 0.00 40.83 1.82
2319 2380 6.620877 TCATGTTCTCCCAACTAACATAGT 57.379 37.500 0.00 0.00 40.83 2.12
2320 2381 5.525378 GCTCATGTTCTCCCAACTAACATAG 59.475 44.000 0.00 0.00 40.83 2.23
2321 2382 5.045942 TGCTCATGTTCTCCCAACTAACATA 60.046 40.000 0.00 0.00 40.83 2.29
2322 2383 4.263462 TGCTCATGTTCTCCCAACTAACAT 60.263 41.667 0.00 0.00 42.91 2.71
2323 2384 3.072330 TGCTCATGTTCTCCCAACTAACA 59.928 43.478 0.00 0.00 37.51 2.41
2324 2385 3.674997 TGCTCATGTTCTCCCAACTAAC 58.325 45.455 0.00 0.00 0.00 2.34
2325 2386 4.574674 ATGCTCATGTTCTCCCAACTAA 57.425 40.909 0.00 0.00 0.00 2.24
2326 2387 4.225942 AGAATGCTCATGTTCTCCCAACTA 59.774 41.667 0.00 0.00 28.93 2.24
2327 2388 3.009916 AGAATGCTCATGTTCTCCCAACT 59.990 43.478 0.00 0.00 28.93 3.16
2328 2389 3.350833 AGAATGCTCATGTTCTCCCAAC 58.649 45.455 0.00 0.00 28.93 3.77
2329 2390 3.009363 TGAGAATGCTCATGTTCTCCCAA 59.991 43.478 16.81 1.51 45.88 4.12
2330 2391 2.573009 TGAGAATGCTCATGTTCTCCCA 59.427 45.455 16.81 2.58 45.88 4.37
2331 2392 3.272574 TGAGAATGCTCATGTTCTCCC 57.727 47.619 16.81 0.46 45.88 4.30
2341 2402 3.775202 TCGCTAAACTCTGAGAATGCTC 58.225 45.455 12.44 0.00 41.67 4.26
2342 2403 3.876274 TCGCTAAACTCTGAGAATGCT 57.124 42.857 12.44 0.00 0.00 3.79
2343 2404 4.808364 AGAATCGCTAAACTCTGAGAATGC 59.192 41.667 12.44 8.78 0.00 3.56
2344 2405 6.509317 GAGAATCGCTAAACTCTGAGAATG 57.491 41.667 12.44 0.02 0.00 2.67
2361 2422 1.371881 GATCCGACGGCCGAGAATC 60.372 63.158 35.90 22.83 41.76 2.52
2362 2423 2.728817 GATCCGACGGCCGAGAAT 59.271 61.111 35.90 18.92 41.76 2.40
2363 2424 3.884350 CGATCCGACGGCCGAGAA 61.884 66.667 35.90 14.60 41.76 2.87
2365 2426 2.327002 TAAACGATCCGACGGCCGAG 62.327 60.000 35.90 24.42 41.76 4.63
2366 2427 2.405805 TAAACGATCCGACGGCCGA 61.406 57.895 35.90 10.13 41.76 5.54
2367 2428 2.102749 TAAACGATCCGACGGCCG 59.897 61.111 26.86 26.86 37.61 6.13
2368 2429 0.459063 AAGTAAACGATCCGACGGCC 60.459 55.000 9.66 2.30 37.61 6.13
2369 2430 0.643820 CAAGTAAACGATCCGACGGC 59.356 55.000 9.66 0.00 37.61 5.68
2370 2431 2.267188 TCAAGTAAACGATCCGACGG 57.733 50.000 7.84 7.84 37.61 4.79
2371 2432 2.034842 GCATCAAGTAAACGATCCGACG 60.035 50.000 0.00 0.00 39.31 5.12
2372 2433 2.034842 CGCATCAAGTAAACGATCCGAC 60.035 50.000 0.00 0.00 0.00 4.79
2373 2434 2.190161 CGCATCAAGTAAACGATCCGA 58.810 47.619 0.00 0.00 0.00 4.55
2374 2435 1.924524 ACGCATCAAGTAAACGATCCG 59.075 47.619 0.00 0.00 0.00 4.18
2375 2436 3.617263 AGAACGCATCAAGTAAACGATCC 59.383 43.478 0.00 0.00 0.00 3.36
2376 2437 4.492570 CCAGAACGCATCAAGTAAACGATC 60.493 45.833 0.00 0.00 0.00 3.69
2377 2438 3.370978 CCAGAACGCATCAAGTAAACGAT 59.629 43.478 0.00 0.00 0.00 3.73
2378 2439 2.734606 CCAGAACGCATCAAGTAAACGA 59.265 45.455 0.00 0.00 0.00 3.85
2379 2440 2.734606 TCCAGAACGCATCAAGTAAACG 59.265 45.455 0.00 0.00 0.00 3.60
2380 2441 3.120304 GGTCCAGAACGCATCAAGTAAAC 60.120 47.826 0.00 0.00 0.00 2.01
2381 2442 3.071479 GGTCCAGAACGCATCAAGTAAA 58.929 45.455 0.00 0.00 0.00 2.01
2382 2443 2.695359 GGTCCAGAACGCATCAAGTAA 58.305 47.619 0.00 0.00 0.00 2.24
2383 2444 1.403647 CGGTCCAGAACGCATCAAGTA 60.404 52.381 0.00 0.00 33.50 2.24
2384 2445 0.670546 CGGTCCAGAACGCATCAAGT 60.671 55.000 0.00 0.00 33.50 3.16
2385 2446 2.081526 CGGTCCAGAACGCATCAAG 58.918 57.895 0.00 0.00 33.50 3.02
2386 2447 4.277239 CGGTCCAGAACGCATCAA 57.723 55.556 0.00 0.00 33.50 2.57
2393 2454 2.076863 CTCAATCCAACGGTCCAGAAC 58.923 52.381 0.00 0.00 0.00 3.01
2394 2455 1.610624 GCTCAATCCAACGGTCCAGAA 60.611 52.381 0.00 0.00 0.00 3.02
2395 2456 0.036388 GCTCAATCCAACGGTCCAGA 60.036 55.000 0.00 0.00 0.00 3.86
2396 2457 0.036010 AGCTCAATCCAACGGTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
2397 2458 0.036388 GAGCTCAATCCAACGGTCCA 60.036 55.000 9.40 0.00 0.00 4.02
2398 2459 0.744771 GGAGCTCAATCCAACGGTCC 60.745 60.000 17.19 0.00 39.34 4.46
2399 2460 0.744771 GGGAGCTCAATCCAACGGTC 60.745 60.000 17.19 0.00 41.52 4.79
2400 2461 1.299976 GGGAGCTCAATCCAACGGT 59.700 57.895 17.19 0.00 41.52 4.83
2401 2462 1.815421 CGGGAGCTCAATCCAACGG 60.815 63.158 17.19 0.00 41.52 4.44
2402 2463 1.815421 CCGGGAGCTCAATCCAACG 60.815 63.158 17.19 7.59 41.52 4.10
2403 2464 0.181350 ATCCGGGAGCTCAATCCAAC 59.819 55.000 17.19 0.00 41.52 3.77
2404 2465 0.469917 GATCCGGGAGCTCAATCCAA 59.530 55.000 17.19 0.00 41.52 3.53
2405 2466 0.690744 TGATCCGGGAGCTCAATCCA 60.691 55.000 17.19 2.46 41.52 3.41
2406 2467 0.250081 GTGATCCGGGAGCTCAATCC 60.250 60.000 17.19 6.75 38.76 3.01
2407 2468 0.250081 GGTGATCCGGGAGCTCAATC 60.250 60.000 17.19 12.43 0.00 2.67
2408 2469 0.692419 AGGTGATCCGGGAGCTCAAT 60.692 55.000 17.19 2.89 39.05 2.57
2409 2470 1.306141 AGGTGATCCGGGAGCTCAA 60.306 57.895 17.19 0.00 39.05 3.02
2410 2471 2.060383 CAGGTGATCCGGGAGCTCA 61.060 63.158 17.19 4.99 39.05 4.26
2411 2472 2.818132 CAGGTGATCCGGGAGCTC 59.182 66.667 14.18 9.88 39.05 4.09
2412 2473 3.474570 GCAGGTGATCCGGGAGCT 61.475 66.667 14.18 0.00 39.05 4.09
2413 2474 4.899239 CGCAGGTGATCCGGGAGC 62.899 72.222 5.08 5.08 39.05 4.70
2414 2475 4.899239 GCGCAGGTGATCCGGGAG 62.899 72.222 0.30 0.00 39.05 4.30
2436 2497 1.528776 AGTAGCTCCGGGTCGATCC 60.529 63.158 4.00 4.00 0.00 3.36
2437 2498 1.655329 CAGTAGCTCCGGGTCGATC 59.345 63.158 0.00 0.00 0.00 3.69
2438 2499 2.491022 GCAGTAGCTCCGGGTCGAT 61.491 63.158 0.00 0.00 37.91 3.59
2439 2500 3.138798 GCAGTAGCTCCGGGTCGA 61.139 66.667 0.00 0.00 37.91 4.20
2449 2510 5.869888 AGTAACTGTTCATTGTAGCAGTAGC 59.130 40.000 0.00 0.00 40.79 3.58
2450 2511 7.063544 GGAAGTAACTGTTCATTGTAGCAGTAG 59.936 40.741 0.00 0.00 40.79 2.57
2451 2512 6.872020 GGAAGTAACTGTTCATTGTAGCAGTA 59.128 38.462 0.00 0.62 40.79 2.74
2452 2513 5.701290 GGAAGTAACTGTTCATTGTAGCAGT 59.299 40.000 0.00 0.00 43.13 4.40
2453 2514 5.163953 CGGAAGTAACTGTTCATTGTAGCAG 60.164 44.000 0.00 0.00 35.31 4.24
2454 2515 4.688879 CGGAAGTAACTGTTCATTGTAGCA 59.311 41.667 0.00 0.00 0.00 3.49
2455 2516 4.689345 ACGGAAGTAACTGTTCATTGTAGC 59.311 41.667 0.00 0.00 46.88 3.58
2472 2533 2.943653 GGTGGCACGAAACGGAAG 59.056 61.111 12.17 0.00 0.00 3.46
2473 2534 2.968156 CGGTGGCACGAAACGGAA 60.968 61.111 12.17 0.00 35.47 4.30
2482 2543 3.711997 GAATTACGCGCGGTGGCAC 62.712 63.158 35.22 16.27 39.92 5.01
2483 2544 3.492545 GAATTACGCGCGGTGGCA 61.493 61.111 35.22 12.94 39.92 4.92
2484 2545 4.232248 GGAATTACGCGCGGTGGC 62.232 66.667 35.22 18.16 0.00 5.01
2485 2546 2.808958 CTGGAATTACGCGCGGTGG 61.809 63.158 35.22 6.61 0.00 4.61
2486 2547 2.701006 CTGGAATTACGCGCGGTG 59.299 61.111 35.22 7.05 0.00 4.94
2487 2548 3.192922 GCTGGAATTACGCGCGGT 61.193 61.111 35.22 21.38 0.00 5.68
2488 2549 4.279535 CGCTGGAATTACGCGCGG 62.280 66.667 35.22 16.31 40.42 6.46
2493 2554 2.900337 GGGGGCGCTGGAATTACG 60.900 66.667 7.64 0.00 0.00 3.18
2494 2555 2.119029 GTGGGGGCGCTGGAATTAC 61.119 63.158 7.64 0.00 0.00 1.89
2495 2556 2.143575 TTGTGGGGGCGCTGGAATTA 62.144 55.000 7.64 0.00 0.00 1.40
2496 2557 3.521765 TTGTGGGGGCGCTGGAATT 62.522 57.895 7.64 0.00 0.00 2.17
2497 2558 3.944250 CTTGTGGGGGCGCTGGAAT 62.944 63.158 7.64 0.00 0.00 3.01
2498 2559 4.659172 CTTGTGGGGGCGCTGGAA 62.659 66.667 7.64 0.00 0.00 3.53
2509 2570 5.633182 CGAAATGACAAAAATACCCTTGTGG 59.367 40.000 0.00 0.00 35.93 4.17
2510 2571 5.118510 GCGAAATGACAAAAATACCCTTGTG 59.881 40.000 0.00 0.00 35.93 3.33
2511 2572 5.221342 TGCGAAATGACAAAAATACCCTTGT 60.221 36.000 0.00 0.00 38.46 3.16
2512 2573 5.118510 GTGCGAAATGACAAAAATACCCTTG 59.881 40.000 0.00 0.00 0.00 3.61
2513 2574 5.227152 GTGCGAAATGACAAAAATACCCTT 58.773 37.500 0.00 0.00 0.00 3.95
2514 2575 4.614993 CGTGCGAAATGACAAAAATACCCT 60.615 41.667 0.00 0.00 0.00 4.34
2515 2576 3.606346 CGTGCGAAATGACAAAAATACCC 59.394 43.478 0.00 0.00 0.00 3.69
2516 2577 4.223659 ACGTGCGAAATGACAAAAATACC 58.776 39.130 0.00 0.00 0.00 2.73
2517 2578 5.506832 CCTACGTGCGAAATGACAAAAATAC 59.493 40.000 0.00 0.00 0.00 1.89
2518 2579 5.623335 CCTACGTGCGAAATGACAAAAATA 58.377 37.500 0.00 0.00 0.00 1.40
2519 2580 4.472286 CCTACGTGCGAAATGACAAAAAT 58.528 39.130 0.00 0.00 0.00 1.82
2520 2581 3.850374 GCCTACGTGCGAAATGACAAAAA 60.850 43.478 0.00 0.00 0.00 1.94
2521 2582 2.350007 GCCTACGTGCGAAATGACAAAA 60.350 45.455 0.00 0.00 0.00 2.44
2522 2583 1.195900 GCCTACGTGCGAAATGACAAA 59.804 47.619 0.00 0.00 0.00 2.83
2523 2584 0.793861 GCCTACGTGCGAAATGACAA 59.206 50.000 0.00 0.00 0.00 3.18
2524 2585 2.451693 GCCTACGTGCGAAATGACA 58.548 52.632 0.00 0.00 0.00 3.58
2537 2598 1.871676 GGCTGCCTTTTATACGCCTAC 59.128 52.381 12.43 0.00 34.80 3.18
2538 2599 1.539496 CGGCTGCCTTTTATACGCCTA 60.539 52.381 17.92 0.00 35.46 3.93
2539 2600 0.814010 CGGCTGCCTTTTATACGCCT 60.814 55.000 17.92 0.00 35.46 5.52
2540 2601 1.647084 CGGCTGCCTTTTATACGCC 59.353 57.895 17.92 0.00 0.00 5.68
2541 2602 1.010013 GCGGCTGCCTTTTATACGC 60.010 57.895 17.92 8.49 38.70 4.42
2542 2603 0.582005 GAGCGGCTGCCTTTTATACG 59.418 55.000 15.55 1.51 44.31 3.06
2543 2604 0.945099 GGAGCGGCTGCCTTTTATAC 59.055 55.000 15.55 0.00 44.31 1.47
2544 2605 0.179029 GGGAGCGGCTGCCTTTTATA 60.179 55.000 30.51 0.00 44.31 0.98
2545 2606 1.453928 GGGAGCGGCTGCCTTTTAT 60.454 57.895 30.51 0.00 44.31 1.40
2546 2607 2.045340 GGGAGCGGCTGCCTTTTA 60.045 61.111 30.51 0.00 44.31 1.52
2560 2621 2.621070 GCTAGGTTATCTCCATGGGGA 58.379 52.381 18.95 18.95 42.29 4.81
2561 2622 1.630878 GGCTAGGTTATCTCCATGGGG 59.369 57.143 13.02 9.18 0.00 4.96
2562 2623 1.276421 CGGCTAGGTTATCTCCATGGG 59.724 57.143 13.02 2.57 0.00 4.00
2563 2624 1.338200 GCGGCTAGGTTATCTCCATGG 60.338 57.143 4.97 4.97 0.00 3.66
2564 2625 1.338200 GGCGGCTAGGTTATCTCCATG 60.338 57.143 0.00 0.00 0.00 3.66
2565 2626 0.977395 GGCGGCTAGGTTATCTCCAT 59.023 55.000 0.00 0.00 0.00 3.41
2566 2627 1.461091 CGGCGGCTAGGTTATCTCCA 61.461 60.000 7.61 0.00 0.00 3.86
2567 2628 1.289380 CGGCGGCTAGGTTATCTCC 59.711 63.158 7.61 0.00 0.00 3.71
2568 2629 1.373121 GCGGCGGCTAGGTTATCTC 60.373 63.158 9.78 0.00 35.83 2.75
2569 2630 2.735237 GCGGCGGCTAGGTTATCT 59.265 61.111 9.78 0.00 35.83 1.98
2570 2631 2.357154 GGCGGCGGCTAGGTTATC 60.357 66.667 27.22 0.00 39.81 1.75
2571 2632 2.842936 AGGCGGCGGCTAGGTTAT 60.843 61.111 35.47 9.02 36.44 1.89
2572 2633 3.534056 GAGGCGGCGGCTAGGTTA 61.534 66.667 36.29 0.00 38.98 2.85
2583 2644 4.200283 GAGTGCTCGAGGAGGCGG 62.200 72.222 15.58 0.00 0.00 6.13
2584 2645 4.200283 GGAGTGCTCGAGGAGGCG 62.200 72.222 15.58 0.00 0.00 5.52
2585 2646 3.844090 GGGAGTGCTCGAGGAGGC 61.844 72.222 15.58 5.98 0.00 4.70
2586 2647 3.522731 CGGGAGTGCTCGAGGAGG 61.523 72.222 15.58 0.00 41.67 4.30
2587 2648 4.200283 GCGGGAGTGCTCGAGGAG 62.200 72.222 15.58 0.00 41.67 3.69
2589 2650 4.803426 GTGCGGGAGTGCTCGAGG 62.803 72.222 15.58 0.00 41.67 4.63
2590 2651 3.691744 GAGTGCGGGAGTGCTCGAG 62.692 68.421 8.45 8.45 41.67 4.04
2591 2652 3.749064 GAGTGCGGGAGTGCTCGA 61.749 66.667 0.00 0.00 41.67 4.04
2634 2695 4.200283 GAGAGAGGTGAGGGCGCG 62.200 72.222 0.00 0.00 0.00 6.86
2635 2696 2.757917 AGAGAGAGGTGAGGGCGC 60.758 66.667 0.00 0.00 0.00 6.53
2636 2697 2.124693 GGAGAGAGAGGTGAGGGCG 61.125 68.421 0.00 0.00 0.00 6.13
2637 2698 1.760480 GGGAGAGAGAGGTGAGGGC 60.760 68.421 0.00 0.00 0.00 5.19
2638 2699 1.075600 GGGGAGAGAGAGGTGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
2639 2700 0.106217 GAGGGGAGAGAGAGGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
2640 2701 0.106217 GGAGGGGAGAGAGAGGTGAG 60.106 65.000 0.00 0.00 0.00 3.51
2641 2702 0.851332 TGGAGGGGAGAGAGAGGTGA 60.851 60.000 0.00 0.00 0.00 4.02
2642 2703 0.041833 TTGGAGGGGAGAGAGAGGTG 59.958 60.000 0.00 0.00 0.00 4.00
2643 2704 0.793617 TTTGGAGGGGAGAGAGAGGT 59.206 55.000 0.00 0.00 0.00 3.85
2644 2705 1.199615 GTTTGGAGGGGAGAGAGAGG 58.800 60.000 0.00 0.00 0.00 3.69
2645 2706 1.199615 GGTTTGGAGGGGAGAGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
2646 2707 0.252742 GGGTTTGGAGGGGAGAGAGA 60.253 60.000 0.00 0.00 0.00 3.10
2647 2708 0.252927 AGGGTTTGGAGGGGAGAGAG 60.253 60.000 0.00 0.00 0.00 3.20
2648 2709 1.098589 TAGGGTTTGGAGGGGAGAGA 58.901 55.000 0.00 0.00 0.00 3.10
2649 2710 1.205055 GTAGGGTTTGGAGGGGAGAG 58.795 60.000 0.00 0.00 0.00 3.20
2650 2711 0.253020 GGTAGGGTTTGGAGGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
2651 2712 1.279749 GGGTAGGGTTTGGAGGGGAG 61.280 65.000 0.00 0.00 0.00 4.30
2652 2713 1.230050 GGGTAGGGTTTGGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
2653 2714 2.314215 GGGGTAGGGTTTGGAGGGG 61.314 68.421 0.00 0.00 0.00 4.79
2654 2715 2.676265 CGGGGTAGGGTTTGGAGGG 61.676 68.421 0.00 0.00 0.00 4.30
2655 2716 2.995547 CGGGGTAGGGTTTGGAGG 59.004 66.667 0.00 0.00 0.00 4.30
2656 2717 2.271173 GCGGGGTAGGGTTTGGAG 59.729 66.667 0.00 0.00 0.00 3.86
2657 2718 3.332385 GGCGGGGTAGGGTTTGGA 61.332 66.667 0.00 0.00 0.00 3.53
2658 2719 4.789123 CGGCGGGGTAGGGTTTGG 62.789 72.222 0.00 0.00 0.00 3.28
2694 2755 4.512914 GAGGCAGGGGATGGGTGC 62.513 72.222 0.00 0.00 36.42 5.01
2695 2756 3.016971 TGAGGCAGGGGATGGGTG 61.017 66.667 0.00 0.00 0.00 4.61
2696 2757 3.017581 GTGAGGCAGGGGATGGGT 61.018 66.667 0.00 0.00 0.00 4.51
2697 2758 4.181010 CGTGAGGCAGGGGATGGG 62.181 72.222 0.00 0.00 0.00 4.00
2698 2759 4.864334 GCGTGAGGCAGGGGATGG 62.864 72.222 0.00 0.00 42.87 3.51
2708 2769 1.043116 TCTAGATGGGTGGCGTGAGG 61.043 60.000 0.00 0.00 0.00 3.86
2709 2770 0.387202 CTCTAGATGGGTGGCGTGAG 59.613 60.000 0.00 0.00 0.00 3.51
2710 2771 0.033503 TCTCTAGATGGGTGGCGTGA 60.034 55.000 0.00 0.00 0.00 4.35
2711 2772 0.387202 CTCTCTAGATGGGTGGCGTG 59.613 60.000 0.00 0.00 0.00 5.34
2712 2773 0.259065 TCTCTCTAGATGGGTGGCGT 59.741 55.000 0.00 0.00 0.00 5.68
2713 2774 1.626686 ATCTCTCTAGATGGGTGGCG 58.373 55.000 0.00 0.00 41.08 5.69
2721 2782 0.902516 GCGGCCCCATCTCTCTAGAT 60.903 60.000 0.00 0.00 43.54 1.98
2722 2783 1.531840 GCGGCCCCATCTCTCTAGA 60.532 63.158 0.00 0.00 35.80 2.43
2723 2784 2.925262 CGCGGCCCCATCTCTCTAG 61.925 68.421 0.00 0.00 0.00 2.43
2724 2785 2.912542 CGCGGCCCCATCTCTCTA 60.913 66.667 0.00 0.00 0.00 2.43
2757 2818 1.796749 GAAGACGAGACGACGGCAC 60.797 63.158 2.19 0.00 44.44 5.01
2758 2819 1.964891 AGAAGACGAGACGACGGCA 60.965 57.895 2.19 0.00 44.44 5.69
2759 2820 1.512310 CAGAAGACGAGACGACGGC 60.512 63.158 0.00 0.00 42.10 5.68
2760 2821 1.512310 GCAGAAGACGAGACGACGG 60.512 63.158 0.00 0.00 37.61 4.79
2761 2822 1.512310 GGCAGAAGACGAGACGACG 60.512 63.158 0.00 0.00 39.31 5.12
2762 2823 4.461784 GGCAGAAGACGAGACGAC 57.538 61.111 0.00 0.00 0.00 4.34
2815 2876 4.899239 GATGGGTGCCCGAGCGAG 62.899 72.222 2.44 0.00 44.31 5.03
2818 2879 4.554036 GAGGATGGGTGCCCGAGC 62.554 72.222 2.44 0.00 39.42 5.03
2819 2880 4.227134 CGAGGATGGGTGCCCGAG 62.227 72.222 2.44 0.00 39.42 4.63
2824 2885 4.554036 GAGGCCGAGGATGGGTGC 62.554 72.222 0.00 0.00 35.77 5.01
2825 2886 3.083349 TGAGGCCGAGGATGGGTG 61.083 66.667 0.00 0.00 35.77 4.61
2826 2887 3.083997 GTGAGGCCGAGGATGGGT 61.084 66.667 0.00 0.00 35.77 4.51
2827 2888 3.083349 TGTGAGGCCGAGGATGGG 61.083 66.667 0.00 0.00 36.85 4.00
2828 2889 2.187946 GTGTGAGGCCGAGGATGG 59.812 66.667 0.00 0.00 0.00 3.51
2829 2890 2.187946 GGTGTGAGGCCGAGGATG 59.812 66.667 0.00 0.00 0.00 3.51
2830 2891 2.284625 TGGTGTGAGGCCGAGGAT 60.285 61.111 0.00 0.00 0.00 3.24
2831 2892 3.311110 GTGGTGTGAGGCCGAGGA 61.311 66.667 0.00 0.00 0.00 3.71
2832 2893 4.394712 GGTGGTGTGAGGCCGAGG 62.395 72.222 0.00 0.00 0.00 4.63
2833 2894 4.394712 GGGTGGTGTGAGGCCGAG 62.395 72.222 0.00 0.00 0.00 4.63
2835 2896 3.976701 GATGGGTGGTGTGAGGCCG 62.977 68.421 0.00 0.00 0.00 6.13
2836 2897 1.271840 TAGATGGGTGGTGTGAGGCC 61.272 60.000 0.00 0.00 0.00 5.19
2837 2898 0.179000 CTAGATGGGTGGTGTGAGGC 59.821 60.000 0.00 0.00 0.00 4.70
2838 2899 1.759445 CTCTAGATGGGTGGTGTGAGG 59.241 57.143 0.00 0.00 0.00 3.86
2839 2900 2.692557 CTCTCTAGATGGGTGGTGTGAG 59.307 54.545 0.00 0.00 0.00 3.51
2840 2901 2.311841 TCTCTCTAGATGGGTGGTGTGA 59.688 50.000 0.00 0.00 0.00 3.58
2841 2902 2.739943 TCTCTCTAGATGGGTGGTGTG 58.260 52.381 0.00 0.00 0.00 3.82
2842 2903 3.697190 ATCTCTCTAGATGGGTGGTGT 57.303 47.619 0.00 0.00 41.08 4.16
2851 2912 0.870313 TGGCCCCCATCTCTCTAGAT 59.130 55.000 0.00 0.00 43.54 1.98
2852 2913 0.105453 GTGGCCCCCATCTCTCTAGA 60.105 60.000 0.00 0.00 35.28 2.43
2853 2914 1.467678 CGTGGCCCCCATCTCTCTAG 61.468 65.000 0.00 0.00 35.28 2.43
2854 2915 1.457643 CGTGGCCCCCATCTCTCTA 60.458 63.158 0.00 0.00 35.28 2.43
2855 2916 2.765807 CGTGGCCCCCATCTCTCT 60.766 66.667 0.00 0.00 35.28 3.10
2856 2917 3.866582 CCGTGGCCCCCATCTCTC 61.867 72.222 0.00 0.00 35.28 3.20
2864 2925 4.489771 CTCATCACCCGTGGCCCC 62.490 72.222 0.00 0.00 0.00 5.80
2865 2926 4.489771 CCTCATCACCCGTGGCCC 62.490 72.222 0.00 0.00 0.00 5.80
2868 2929 4.838152 CGGCCTCATCACCCGTGG 62.838 72.222 0.00 0.00 37.36 4.94
2869 2930 4.838152 CCGGCCTCATCACCCGTG 62.838 72.222 0.00 0.00 40.38 4.94
2874 2935 4.148825 AGACGCCGGCCTCATCAC 62.149 66.667 23.46 4.46 0.00 3.06
2875 2936 3.838271 GAGACGCCGGCCTCATCA 61.838 66.667 23.46 0.00 0.00 3.07
2876 2937 3.157217 ATGAGACGCCGGCCTCATC 62.157 63.158 31.07 22.07 44.28 2.92
2877 2938 3.157252 ATGAGACGCCGGCCTCAT 61.157 61.111 31.07 31.07 43.20 2.90
2878 2939 3.838271 GATGAGACGCCGGCCTCA 61.838 66.667 29.79 29.79 42.78 3.86
2879 2940 4.933064 CGATGAGACGCCGGCCTC 62.933 72.222 23.46 22.46 0.00 4.70
2883 2944 4.570663 GGGACGATGAGACGCCGG 62.571 72.222 0.00 0.00 36.70 6.13
2896 2957 2.182030 CCTCGCAGAAGACGGGAC 59.818 66.667 0.00 0.00 34.09 4.46
2897 2958 2.282958 ACCTCGCAGAAGACGGGA 60.283 61.111 0.00 0.00 34.09 5.14
2898 2959 2.182030 GACCTCGCAGAAGACGGG 59.818 66.667 0.00 0.00 34.09 5.28
2899 2960 2.202492 CGACCTCGCAGAAGACGG 60.202 66.667 0.00 0.00 34.09 4.79
2900 2961 1.226156 CTCGACCTCGCAGAAGACG 60.226 63.158 0.00 0.00 39.60 4.18
2901 2962 1.137825 CCTCGACCTCGCAGAAGAC 59.862 63.158 0.00 0.00 39.60 3.01
2902 2963 1.002502 TCCTCGACCTCGCAGAAGA 60.003 57.895 0.00 0.00 39.60 2.87
2903 2964 1.027255 TCTCCTCGACCTCGCAGAAG 61.027 60.000 0.00 0.00 39.60 2.85
2904 2965 1.002502 TCTCCTCGACCTCGCAGAA 60.003 57.895 0.00 0.00 39.60 3.02
2905 2966 1.450491 CTCTCCTCGACCTCGCAGA 60.450 63.158 0.00 0.00 39.60 4.26
2906 2967 3.106552 CTCTCCTCGACCTCGCAG 58.893 66.667 0.00 0.00 39.60 5.18
2907 2968 3.134792 GCTCTCCTCGACCTCGCA 61.135 66.667 0.00 0.00 39.60 5.10
2908 2969 3.894947 GGCTCTCCTCGACCTCGC 61.895 72.222 0.00 0.00 39.60 5.03
2909 2970 1.388065 ATTGGCTCTCCTCGACCTCG 61.388 60.000 0.00 0.00 41.45 4.63
2910 2971 0.387565 GATTGGCTCTCCTCGACCTC 59.612 60.000 0.00 0.00 0.00 3.85
2911 2972 1.045911 GGATTGGCTCTCCTCGACCT 61.046 60.000 0.00 0.00 0.00 3.85
2912 2973 1.443828 GGATTGGCTCTCCTCGACC 59.556 63.158 0.00 0.00 0.00 4.79
2913 2974 1.330655 TGGGATTGGCTCTCCTCGAC 61.331 60.000 6.00 0.00 33.05 4.20
2914 2975 1.001631 TGGGATTGGCTCTCCTCGA 59.998 57.895 6.00 0.00 33.05 4.04
2915 2976 1.144936 GTGGGATTGGCTCTCCTCG 59.855 63.158 6.00 0.00 33.05 4.63
2916 2977 0.985490 AGGTGGGATTGGCTCTCCTC 60.985 60.000 6.00 1.37 33.05 3.71
2917 2978 0.985490 GAGGTGGGATTGGCTCTCCT 60.985 60.000 6.00 0.00 33.05 3.69
2918 2979 1.529309 GAGGTGGGATTGGCTCTCC 59.471 63.158 0.00 0.00 0.00 3.71
2919 2980 1.144936 CGAGGTGGGATTGGCTCTC 59.855 63.158 0.00 0.00 0.00 3.20
2920 2981 3.036429 GCGAGGTGGGATTGGCTCT 62.036 63.158 0.00 0.00 0.00 4.09
2921 2982 2.514824 GCGAGGTGGGATTGGCTC 60.515 66.667 0.00 0.00 0.00 4.70
2922 2983 4.115199 GGCGAGGTGGGATTGGCT 62.115 66.667 0.00 0.00 0.00 4.75
2989 3050 1.810606 CGACATCCAGATCGAGGGGG 61.811 65.000 7.30 0.00 40.86 5.40
2990 3051 1.662608 CGACATCCAGATCGAGGGG 59.337 63.158 7.30 0.00 40.86 4.79
2991 3052 1.006805 GCGACATCCAGATCGAGGG 60.007 63.158 7.30 1.60 40.86 4.30
2992 3053 1.006805 GGCGACATCCAGATCGAGG 60.007 63.158 0.00 1.18 40.86 4.63
2993 3054 1.371022 CGGCGACATCCAGATCGAG 60.371 63.158 0.00 0.00 40.86 4.04
2994 3055 2.060004 GACGGCGACATCCAGATCGA 62.060 60.000 16.62 0.00 40.86 3.59
2995 3056 1.658717 GACGGCGACATCCAGATCG 60.659 63.158 16.62 0.00 41.32 3.69
2996 3057 1.658717 CGACGGCGACATCCAGATC 60.659 63.158 16.62 0.00 40.82 2.75
2997 3058 2.413351 CGACGGCGACATCCAGAT 59.587 61.111 16.62 0.00 40.82 2.90
2998 3059 4.492160 GCGACGGCGACATCCAGA 62.492 66.667 18.90 0.00 40.82 3.86
3017 3078 3.680786 GCGAAGGGGGCAAACCAC 61.681 66.667 0.00 0.00 45.96 4.16
3018 3079 4.986708 GGCGAAGGGGGCAAACCA 62.987 66.667 0.00 0.00 42.91 3.67
3019 3080 4.678743 AGGCGAAGGGGGCAAACC 62.679 66.667 0.00 0.00 39.11 3.27
3020 3081 3.062466 GAGGCGAAGGGGGCAAAC 61.062 66.667 0.00 0.00 34.40 2.93
3021 3082 2.764637 GAAGAGGCGAAGGGGGCAAA 62.765 60.000 0.00 0.00 34.40 3.68
3022 3083 3.256960 AAGAGGCGAAGGGGGCAA 61.257 61.111 0.00 0.00 34.40 4.52
3023 3084 2.815684 TAGAAGAGGCGAAGGGGGCA 62.816 60.000 0.00 0.00 34.40 5.36
3024 3085 1.411651 ATAGAAGAGGCGAAGGGGGC 61.412 60.000 0.00 0.00 0.00 5.80
3025 3086 0.682292 GATAGAAGAGGCGAAGGGGG 59.318 60.000 0.00 0.00 0.00 5.40
3026 3087 0.682292 GGATAGAAGAGGCGAAGGGG 59.318 60.000 0.00 0.00 0.00 4.79
3027 3088 1.342819 CTGGATAGAAGAGGCGAAGGG 59.657 57.143 0.00 0.00 0.00 3.95
3028 3089 1.270041 GCTGGATAGAAGAGGCGAAGG 60.270 57.143 0.00 0.00 0.00 3.46
3029 3090 1.270041 GGCTGGATAGAAGAGGCGAAG 60.270 57.143 0.00 0.00 0.00 3.79
3030 3091 0.753262 GGCTGGATAGAAGAGGCGAA 59.247 55.000 0.00 0.00 0.00 4.70
3031 3092 2.431023 GGCTGGATAGAAGAGGCGA 58.569 57.895 0.00 0.00 0.00 5.54
3033 3094 0.249657 CACGGCTGGATAGAAGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
3034 3095 1.115467 ACACGGCTGGATAGAAGAGG 58.885 55.000 0.00 0.00 0.00 3.69
3035 3096 3.381908 AGTTACACGGCTGGATAGAAGAG 59.618 47.826 0.00 0.00 0.00 2.85
3036 3097 3.362706 AGTTACACGGCTGGATAGAAGA 58.637 45.455 0.00 0.00 0.00 2.87
3037 3098 3.707793 GAGTTACACGGCTGGATAGAAG 58.292 50.000 0.00 0.00 0.00 2.85
3038 3099 2.098607 CGAGTTACACGGCTGGATAGAA 59.901 50.000 0.00 0.00 0.00 2.10
3039 3100 1.674441 CGAGTTACACGGCTGGATAGA 59.326 52.381 0.00 0.00 0.00 1.98
3040 3101 1.674441 TCGAGTTACACGGCTGGATAG 59.326 52.381 2.06 0.00 0.00 2.08
3041 3102 1.674441 CTCGAGTTACACGGCTGGATA 59.326 52.381 3.62 0.00 0.00 2.59
3042 3103 0.456221 CTCGAGTTACACGGCTGGAT 59.544 55.000 3.62 0.00 0.00 3.41
3043 3104 1.880894 CTCGAGTTACACGGCTGGA 59.119 57.895 3.62 0.00 0.00 3.86
3044 3105 1.805945 GCTCGAGTTACACGGCTGG 60.806 63.158 15.13 0.00 0.00 4.85
3045 3106 1.805945 GGCTCGAGTTACACGGCTG 60.806 63.158 15.13 0.00 0.00 4.85
3046 3107 2.572284 GGCTCGAGTTACACGGCT 59.428 61.111 15.13 0.00 0.00 5.52
3047 3108 2.879462 CGGCTCGAGTTACACGGC 60.879 66.667 15.13 4.96 0.00 5.68
3048 3109 2.202570 CCGGCTCGAGTTACACGG 60.203 66.667 15.13 15.58 35.01 4.94
3049 3110 2.879462 GCCGGCTCGAGTTACACG 60.879 66.667 22.15 10.81 0.00 4.49
3050 3111 0.739813 ATTGCCGGCTCGAGTTACAC 60.740 55.000 29.70 1.08 0.00 2.90
3051 3112 0.818938 TATTGCCGGCTCGAGTTACA 59.181 50.000 29.70 0.00 0.00 2.41
3052 3113 2.059541 GATATTGCCGGCTCGAGTTAC 58.940 52.381 29.70 7.75 0.00 2.50
3053 3114 1.000506 GGATATTGCCGGCTCGAGTTA 59.999 52.381 29.70 10.21 0.00 2.24
3054 3115 0.249911 GGATATTGCCGGCTCGAGTT 60.250 55.000 29.70 7.47 0.00 3.01
3055 3116 1.367840 GGATATTGCCGGCTCGAGT 59.632 57.895 29.70 9.92 0.00 4.18
3056 3117 0.668706 CTGGATATTGCCGGCTCGAG 60.669 60.000 29.70 18.76 0.00 4.04
3057 3118 1.367471 CTGGATATTGCCGGCTCGA 59.633 57.895 29.70 12.99 0.00 4.04
3058 3119 3.957260 CTGGATATTGCCGGCTCG 58.043 61.111 29.70 0.72 0.00 5.03
3062 3123 0.599558 CCATTGCTGGATATTGCCGG 59.400 55.000 0.00 0.00 46.37 6.13
3063 3124 0.038892 GCCATTGCTGGATATTGCCG 60.039 55.000 0.00 0.00 46.37 5.69
3064 3125 0.038892 CGCCATTGCTGGATATTGCC 60.039 55.000 0.00 0.00 46.37 4.52
3065 3126 0.665369 GCGCCATTGCTGGATATTGC 60.665 55.000 0.00 0.00 46.37 3.56
3066 3127 0.386352 CGCGCCATTGCTGGATATTG 60.386 55.000 0.00 0.00 46.37 1.90
3067 3128 1.518056 CCGCGCCATTGCTGGATATT 61.518 55.000 0.00 0.00 46.37 1.28
3068 3129 1.968017 CCGCGCCATTGCTGGATAT 60.968 57.895 0.00 0.00 46.37 1.63
3069 3130 2.591429 CCGCGCCATTGCTGGATA 60.591 61.111 0.00 0.00 46.37 2.59
3085 3146 2.032681 AAGGCAGAGTTGACCGCC 59.967 61.111 0.00 0.00 45.23 6.13
3086 3147 2.035442 GGAAGGCAGAGTTGACCGC 61.035 63.158 0.00 0.00 30.13 5.68
3087 3148 1.376037 GGGAAGGCAGAGTTGACCG 60.376 63.158 0.00 0.00 30.13 4.79
3088 3149 1.376037 CGGGAAGGCAGAGTTGACC 60.376 63.158 0.00 0.00 30.13 4.02
3089 3150 0.390472 CTCGGGAAGGCAGAGTTGAC 60.390 60.000 0.00 0.00 0.00 3.18
3090 3151 1.975327 CTCGGGAAGGCAGAGTTGA 59.025 57.895 0.00 0.00 0.00 3.18
3091 3152 1.743252 GCTCGGGAAGGCAGAGTTG 60.743 63.158 0.00 0.00 34.69 3.16
3092 3153 2.665603 GCTCGGGAAGGCAGAGTT 59.334 61.111 0.00 0.00 34.69 3.01
3100 3161 4.194720 CTCGTCGGGCTCGGGAAG 62.195 72.222 5.94 0.00 36.95 3.46
3101 3162 4.728110 TCTCGTCGGGCTCGGGAA 62.728 66.667 5.94 0.00 34.79 3.97
3102 3163 4.728110 TTCTCGTCGGGCTCGGGA 62.728 66.667 5.94 2.86 35.96 5.14
3103 3164 4.194720 CTTCTCGTCGGGCTCGGG 62.195 72.222 5.94 0.00 36.95 5.14
3104 3165 4.194720 CCTTCTCGTCGGGCTCGG 62.195 72.222 5.94 0.00 36.95 4.63
3105 3166 4.194720 CCCTTCTCGTCGGGCTCG 62.195 72.222 0.00 0.00 32.83 5.03
3106 3167 3.839432 CCCCTTCTCGTCGGGCTC 61.839 72.222 0.00 0.00 39.22 4.70
3107 3168 4.698625 ACCCCTTCTCGTCGGGCT 62.699 66.667 0.00 0.00 40.86 5.19
3108 3169 3.703127 AACCCCTTCTCGTCGGGC 61.703 66.667 0.00 0.00 40.86 6.13
3109 3170 2.264794 CAACCCCTTCTCGTCGGG 59.735 66.667 0.00 0.00 43.05 5.14
3110 3171 2.434359 GCAACCCCTTCTCGTCGG 60.434 66.667 0.00 0.00 0.00 4.79
3111 3172 2.809601 CGCAACCCCTTCTCGTCG 60.810 66.667 0.00 0.00 0.00 5.12
3112 3173 3.119096 GCGCAACCCCTTCTCGTC 61.119 66.667 0.30 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.