Multiple sequence alignment - TraesCS3D01G308900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G308900 chr3D 100.000 3546 0 0 1 3546 422732411 422728866 0.000000e+00 6549.0
1 TraesCS3D01G308900 chr3B 93.705 2891 133 26 1 2864 550982198 550979330 0.000000e+00 4285.0
2 TraesCS3D01G308900 chr3A 92.591 1849 73 19 1 1809 566138196 566140020 0.000000e+00 2597.0
3 TraesCS3D01G308900 chr3A 92.970 1010 62 5 1825 2830 566140111 566141115 0.000000e+00 1463.0
4 TraesCS3D01G308900 chr3A 88.750 160 17 1 2865 3024 566203291 566203449 1.000000e-45 195.0
5 TraesCS3D01G308900 chr2D 80.714 140 11 9 3028 3152 316121850 316121712 1.050000e-15 95.3
6 TraesCS3D01G308900 chr1D 86.585 82 7 4 3074 3153 173929869 173929948 1.750000e-13 87.9
7 TraesCS3D01G308900 chr5D 87.719 57 5 1 3046 3100 494496802 494496746 8.220000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G308900 chr3D 422728866 422732411 3545 True 6549 6549 100.0000 1 3546 1 chr3D.!!$R1 3545
1 TraesCS3D01G308900 chr3B 550979330 550982198 2868 True 4285 4285 93.7050 1 2864 1 chr3B.!!$R1 2863
2 TraesCS3D01G308900 chr3A 566138196 566141115 2919 False 2030 2597 92.7805 1 2830 2 chr3A.!!$F2 2829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 608 0.030101 TGCAAGCGGGAAAAGAAACG 59.970 50.0 0.0 0.0 0.0 3.60 F
1593 1639 0.107703 TCAATCCCATCAGACACCGC 60.108 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2033 0.326238 AGGAGAACCAGGCGGGAATA 60.326 55.0 11.67 0.0 41.15 1.75 R
2902 3039 0.035056 GACCCCCACTTGGTGATCTG 60.035 60.0 0.00 0.0 35.85 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 6.465439 AGGAAAATCAAAAGGAAAACGAGT 57.535 33.333 0.00 0.00 0.00 4.18
124 125 8.082242 AGGCAGTTTTGTTTTGTATGAACTATC 58.918 33.333 0.00 0.00 0.00 2.08
128 133 8.576442 AGTTTTGTTTTGTATGAACTATCAGGG 58.424 33.333 0.00 0.00 39.39 4.45
190 195 8.186709 GGTCTAATACCCTGTACAGCTATTAA 57.813 38.462 17.86 11.12 43.16 1.40
245 250 6.710295 TGCTAGTTATGCTTCTTTCAGTTCAA 59.290 34.615 0.00 0.00 0.00 2.69
286 293 7.603024 CAGAAAAAGAGGGTTCGTAGTTCTAAT 59.397 37.037 0.00 0.00 0.00 1.73
425 434 5.178252 CAGTTAACATTCACACCTGTCTGAG 59.822 44.000 8.61 0.00 0.00 3.35
435 444 5.070981 TCACACCTGTCTGAGAAAGATTCTT 59.929 40.000 0.00 0.00 40.87 2.52
468 477 7.916977 TGTAGCATTTGCACAAATCTCAATATC 59.083 33.333 5.64 0.00 45.16 1.63
590 608 0.030101 TGCAAGCGGGAAAAGAAACG 59.970 50.000 0.00 0.00 0.00 3.60
612 630 0.599728 GCGAGGCCTATTCTGCTGAG 60.600 60.000 4.42 0.00 0.00 3.35
758 783 1.815421 CTATCGGCGTGGCTGCTTT 60.815 57.895 6.85 0.00 34.49 3.51
825 850 2.359169 CCGCAGCCCAAGACCTCTA 61.359 63.158 0.00 0.00 0.00 2.43
896 930 2.013483 CGTCATCTCATCTCGGCGC 61.013 63.158 0.00 0.00 0.00 6.53
925 959 1.144913 TCCCTCAAACTTGTCCCCTTG 59.855 52.381 0.00 0.00 0.00 3.61
949 983 4.874396 TCGATATCCTGCGTTCTCGTATAT 59.126 41.667 0.00 0.00 39.49 0.86
959 993 1.605753 TCTCGTATATGTGCTCGGCT 58.394 50.000 0.00 0.00 0.00 5.52
975 1009 2.529619 GCTTGCGTGCTAGCTAGGC 61.530 63.158 22.10 16.66 40.61 3.93
1593 1639 0.107703 TCAATCCCATCAGACACCGC 60.108 55.000 0.00 0.00 0.00 5.68
1625 1671 9.947669 CATCTTCTTCTGGACATGATTTAATTC 57.052 33.333 0.00 0.00 0.00 2.17
1672 1722 2.103736 GCACGTAGCGGGGACTAC 59.896 66.667 0.00 0.00 39.35 2.73
1699 1749 2.671177 CGTCACCAAGGAAGCGCTG 61.671 63.158 12.58 0.00 0.00 5.18
1705 1755 1.271597 ACCAAGGAAGCGCTGAAGAAT 60.272 47.619 12.58 0.00 0.00 2.40
1777 1827 1.408822 GCCTTCGAGACCATCCCAAAT 60.409 52.381 0.00 0.00 0.00 2.32
1822 1943 6.090783 CACGCTCAATAGTTGTAGTCACTAA 58.909 40.000 0.00 0.00 0.00 2.24
1908 2033 1.821753 CTGGAGGAGAACGACATCAGT 59.178 52.381 0.00 0.00 0.00 3.41
2055 2180 1.438469 CTCCCAGGCTAATCCATGGA 58.562 55.000 18.88 18.88 36.07 3.41
2062 2187 1.412710 GGCTAATCCATGGACTCGTCA 59.587 52.381 18.99 0.00 34.01 4.35
2076 2201 4.047822 GACTCGTCATCTCCATTAGCAAG 58.952 47.826 0.00 0.00 0.00 4.01
2077 2202 3.181471 ACTCGTCATCTCCATTAGCAAGG 60.181 47.826 0.00 0.00 0.00 3.61
2078 2203 2.766263 TCGTCATCTCCATTAGCAAGGT 59.234 45.455 0.00 0.00 0.00 3.50
2097 2222 2.883730 GTGAATACGCGCGGCTGA 60.884 61.111 35.22 16.54 0.00 4.26
2160 2285 5.176958 ACTTAATCGTGTGCACTTGTTCTAC 59.823 40.000 19.41 4.72 0.00 2.59
2172 2297 2.254546 TGTTCTACACTTGCAGGTGG 57.745 50.000 29.74 15.13 41.09 4.61
2251 2376 1.343069 GAGTGGGTGGTGAGTTCTCT 58.657 55.000 1.53 0.00 0.00 3.10
2326 2456 1.007502 CACGGACCGTTCGTTGGTA 60.008 57.895 19.02 0.00 40.63 3.25
2530 2663 2.099831 GACGACGACTACCCTGCG 59.900 66.667 0.00 0.00 0.00 5.18
2546 2679 4.143333 CGGTGGCCGTCCTGTAGG 62.143 72.222 13.68 0.00 42.73 3.18
2595 2728 1.141881 CGATGCTGGCGTAGAGGTT 59.858 57.895 0.00 0.00 0.00 3.50
2606 2739 6.229936 TGGCGTAGAGGTTTATGTAAATCT 57.770 37.500 0.00 0.00 39.21 2.40
2644 2777 5.444613 CCTGTTGTGATGTAAATCGTTCTCG 60.445 44.000 0.00 0.00 38.55 4.04
2708 2842 6.045698 TCTAGTTTTAGTCGTATCTCTGCG 57.954 41.667 0.00 0.00 0.00 5.18
2759 2893 0.383949 TTTTGGCGGTGCTTTGAGTC 59.616 50.000 0.00 0.00 0.00 3.36
2762 2896 2.558313 GCGGTGCTTTGAGTCTGC 59.442 61.111 0.00 0.00 0.00 4.26
2864 3001 1.133181 TGCAGATGACAAGTGGGGGA 61.133 55.000 0.00 0.00 0.00 4.81
2865 3002 0.257039 GCAGATGACAAGTGGGGGAT 59.743 55.000 0.00 0.00 0.00 3.85
2866 3003 1.490490 GCAGATGACAAGTGGGGGATA 59.510 52.381 0.00 0.00 0.00 2.59
2867 3004 2.486191 GCAGATGACAAGTGGGGGATAG 60.486 54.545 0.00 0.00 0.00 2.08
2868 3005 2.774234 CAGATGACAAGTGGGGGATAGT 59.226 50.000 0.00 0.00 0.00 2.12
2869 3006 3.200825 CAGATGACAAGTGGGGGATAGTT 59.799 47.826 0.00 0.00 0.00 2.24
2870 3007 3.852578 AGATGACAAGTGGGGGATAGTTT 59.147 43.478 0.00 0.00 0.00 2.66
2871 3008 3.433306 TGACAAGTGGGGGATAGTTTG 57.567 47.619 0.00 0.00 0.00 2.93
2872 3009 2.983192 TGACAAGTGGGGGATAGTTTGA 59.017 45.455 0.00 0.00 0.00 2.69
2873 3010 3.009033 TGACAAGTGGGGGATAGTTTGAG 59.991 47.826 0.00 0.00 0.00 3.02
2874 3011 3.256704 ACAAGTGGGGGATAGTTTGAGA 58.743 45.455 0.00 0.00 0.00 3.27
2875 3012 3.264450 ACAAGTGGGGGATAGTTTGAGAG 59.736 47.826 0.00 0.00 0.00 3.20
2876 3013 2.482494 AGTGGGGGATAGTTTGAGAGG 58.518 52.381 0.00 0.00 0.00 3.69
2877 3014 1.490910 GTGGGGGATAGTTTGAGAGGG 59.509 57.143 0.00 0.00 0.00 4.30
2878 3015 1.141185 GGGGGATAGTTTGAGAGGGG 58.859 60.000 0.00 0.00 0.00 4.79
2879 3016 1.628327 GGGGGATAGTTTGAGAGGGGT 60.628 57.143 0.00 0.00 0.00 4.95
2880 3017 2.206223 GGGGATAGTTTGAGAGGGGTT 58.794 52.381 0.00 0.00 0.00 4.11
2881 3018 2.092375 GGGGATAGTTTGAGAGGGGTTG 60.092 54.545 0.00 0.00 0.00 3.77
2882 3019 2.844348 GGGATAGTTTGAGAGGGGTTGA 59.156 50.000 0.00 0.00 0.00 3.18
2883 3020 3.118223 GGGATAGTTTGAGAGGGGTTGAG 60.118 52.174 0.00 0.00 0.00 3.02
2884 3021 3.775316 GGATAGTTTGAGAGGGGTTGAGA 59.225 47.826 0.00 0.00 0.00 3.27
2885 3022 4.410555 GGATAGTTTGAGAGGGGTTGAGAT 59.589 45.833 0.00 0.00 0.00 2.75
2886 3023 3.990959 AGTTTGAGAGGGGTTGAGATC 57.009 47.619 0.00 0.00 0.00 2.75
2887 3024 2.573915 AGTTTGAGAGGGGTTGAGATCC 59.426 50.000 0.00 0.00 0.00 3.36
2888 3025 2.573915 GTTTGAGAGGGGTTGAGATCCT 59.426 50.000 0.00 0.00 0.00 3.24
2889 3026 2.649742 TGAGAGGGGTTGAGATCCTT 57.350 50.000 0.00 0.00 0.00 3.36
2890 3027 2.921221 TGAGAGGGGTTGAGATCCTTT 58.079 47.619 0.00 0.00 0.00 3.11
2891 3028 4.074799 TGAGAGGGGTTGAGATCCTTTA 57.925 45.455 0.00 0.00 0.00 1.85
2892 3029 3.775316 TGAGAGGGGTTGAGATCCTTTAC 59.225 47.826 0.00 0.00 0.00 2.01
2893 3030 3.775316 GAGAGGGGTTGAGATCCTTTACA 59.225 47.826 0.00 0.00 0.00 2.41
2894 3031 3.777522 AGAGGGGTTGAGATCCTTTACAG 59.222 47.826 0.00 0.00 0.00 2.74
2895 3032 3.519913 GAGGGGTTGAGATCCTTTACAGT 59.480 47.826 0.00 0.00 0.00 3.55
2896 3033 3.264450 AGGGGTTGAGATCCTTTACAGTG 59.736 47.826 0.00 0.00 0.00 3.66
2897 3034 3.010420 GGGTTGAGATCCTTTACAGTGC 58.990 50.000 0.00 0.00 0.00 4.40
2898 3035 3.559171 GGGTTGAGATCCTTTACAGTGCA 60.559 47.826 0.00 0.00 0.00 4.57
2899 3036 3.686726 GGTTGAGATCCTTTACAGTGCAG 59.313 47.826 0.00 0.00 0.00 4.41
2900 3037 4.319177 GTTGAGATCCTTTACAGTGCAGT 58.681 43.478 0.00 0.00 0.00 4.40
2901 3038 3.930336 TGAGATCCTTTACAGTGCAGTG 58.070 45.455 20.11 20.11 0.00 3.66
2902 3039 2.675348 GAGATCCTTTACAGTGCAGTGC 59.325 50.000 21.57 8.58 0.00 4.40
2903 3040 2.038952 AGATCCTTTACAGTGCAGTGCA 59.961 45.455 21.57 15.37 35.60 4.57
2904 3041 1.882912 TCCTTTACAGTGCAGTGCAG 58.117 50.000 20.42 10.70 40.08 4.41
2905 3042 1.416030 TCCTTTACAGTGCAGTGCAGA 59.584 47.619 20.42 6.70 40.08 4.26
2906 3043 2.038952 TCCTTTACAGTGCAGTGCAGAT 59.961 45.455 20.42 7.59 40.08 2.90
2907 3044 2.417933 CCTTTACAGTGCAGTGCAGATC 59.582 50.000 20.42 7.12 40.08 2.75
2908 3045 2.837532 TTACAGTGCAGTGCAGATCA 57.162 45.000 20.42 1.26 40.08 2.92
2909 3046 2.084610 TACAGTGCAGTGCAGATCAC 57.915 50.000 20.42 6.27 45.98 3.06
2910 3047 0.604780 ACAGTGCAGTGCAGATCACC 60.605 55.000 20.42 5.44 46.81 4.02
2911 3048 0.604511 CAGTGCAGTGCAGATCACCA 60.605 55.000 20.42 0.00 46.81 4.17
2912 3049 0.109153 AGTGCAGTGCAGATCACCAA 59.891 50.000 20.42 0.00 46.81 3.67
2913 3050 0.520404 GTGCAGTGCAGATCACCAAG 59.480 55.000 20.42 0.00 46.81 3.61
2914 3051 0.109153 TGCAGTGCAGATCACCAAGT 59.891 50.000 15.37 0.00 46.81 3.16
2915 3052 0.520404 GCAGTGCAGATCACCAAGTG 59.480 55.000 11.09 0.00 46.81 3.16
2916 3053 1.162698 CAGTGCAGATCACCAAGTGG 58.837 55.000 0.00 0.00 46.81 4.00
2917 3054 0.037303 AGTGCAGATCACCAAGTGGG 59.963 55.000 1.69 0.00 46.81 4.61
2918 3055 0.962356 GTGCAGATCACCAAGTGGGG 60.962 60.000 1.69 0.00 42.91 4.96
2919 3056 1.379044 GCAGATCACCAAGTGGGGG 60.379 63.158 0.00 0.00 43.74 5.40
2920 3057 2.078452 CAGATCACCAAGTGGGGGT 58.922 57.895 0.00 0.00 42.53 4.95
2922 3059 1.078426 GATCACCAAGTGGGGGTCG 60.078 63.158 0.00 0.00 39.25 4.79
2923 3060 2.536997 GATCACCAAGTGGGGGTCGG 62.537 65.000 0.00 0.00 39.25 4.79
2924 3061 4.344865 CACCAAGTGGGGGTCGGG 62.345 72.222 1.69 0.00 42.91 5.14
2925 3062 4.912299 ACCAAGTGGGGGTCGGGT 62.912 66.667 1.69 0.00 42.91 5.28
2926 3063 4.029809 CCAAGTGGGGGTCGGGTC 62.030 72.222 0.00 0.00 0.00 4.46
2927 3064 3.246112 CAAGTGGGGGTCGGGTCA 61.246 66.667 0.00 0.00 0.00 4.02
2928 3065 2.928396 AAGTGGGGGTCGGGTCAG 60.928 66.667 0.00 0.00 0.00 3.51
2932 3069 3.728373 GGGGGTCGGGTCAGCAAT 61.728 66.667 0.00 0.00 0.00 3.56
2933 3070 2.124695 GGGGTCGGGTCAGCAATC 60.125 66.667 0.00 0.00 0.00 2.67
2934 3071 2.511600 GGGTCGGGTCAGCAATCG 60.512 66.667 0.00 0.00 0.00 3.34
2935 3072 2.264794 GGTCGGGTCAGCAATCGT 59.735 61.111 0.00 0.00 0.00 3.73
2936 3073 2.100631 GGTCGGGTCAGCAATCGTG 61.101 63.158 0.00 0.00 0.00 4.35
2952 3089 5.630061 CAATCGTGCATCAATGAAACTACA 58.370 37.500 0.00 0.00 0.00 2.74
2953 3090 5.878332 ATCGTGCATCAATGAAACTACAA 57.122 34.783 0.00 0.00 0.00 2.41
2954 3091 5.281693 TCGTGCATCAATGAAACTACAAG 57.718 39.130 0.00 0.00 0.00 3.16
2955 3092 4.994217 TCGTGCATCAATGAAACTACAAGA 59.006 37.500 0.00 0.00 0.00 3.02
2956 3093 5.643348 TCGTGCATCAATGAAACTACAAGAT 59.357 36.000 0.00 0.00 0.00 2.40
2957 3094 6.816140 TCGTGCATCAATGAAACTACAAGATA 59.184 34.615 0.00 0.00 0.00 1.98
2958 3095 6.901887 CGTGCATCAATGAAACTACAAGATAC 59.098 38.462 0.00 0.00 0.00 2.24
2959 3096 7.201556 CGTGCATCAATGAAACTACAAGATACT 60.202 37.037 0.00 0.00 0.00 2.12
2960 3097 8.119226 GTGCATCAATGAAACTACAAGATACTC 58.881 37.037 0.00 0.00 0.00 2.59
2961 3098 7.823799 TGCATCAATGAAACTACAAGATACTCA 59.176 33.333 0.00 0.00 0.00 3.41
2962 3099 8.333908 GCATCAATGAAACTACAAGATACTCAG 58.666 37.037 0.00 0.00 0.00 3.35
2963 3100 7.834068 TCAATGAAACTACAAGATACTCAGC 57.166 36.000 0.00 0.00 0.00 4.26
2964 3101 7.615403 TCAATGAAACTACAAGATACTCAGCT 58.385 34.615 0.00 0.00 0.00 4.24
2965 3102 8.097038 TCAATGAAACTACAAGATACTCAGCTT 58.903 33.333 0.00 0.00 0.00 3.74
2966 3103 8.725148 CAATGAAACTACAAGATACTCAGCTTT 58.275 33.333 0.00 0.00 0.00 3.51
2967 3104 9.944376 AATGAAACTACAAGATACTCAGCTTTA 57.056 29.630 0.00 0.00 0.00 1.85
2969 3106 9.944376 TGAAACTACAAGATACTCAGCTTTATT 57.056 29.630 0.00 0.00 0.00 1.40
2971 3108 9.726438 AAACTACAAGATACTCAGCTTTATTGT 57.274 29.630 0.00 0.00 34.33 2.71
2972 3109 9.726438 AACTACAAGATACTCAGCTTTATTGTT 57.274 29.630 0.00 0.00 32.38 2.83
2976 3113 9.113838 ACAAGATACTCAGCTTTATTGTTATGG 57.886 33.333 0.00 0.00 0.00 2.74
2977 3114 8.562892 CAAGATACTCAGCTTTATTGTTATGGG 58.437 37.037 0.00 0.00 0.00 4.00
2978 3115 8.034313 AGATACTCAGCTTTATTGTTATGGGA 57.966 34.615 0.00 0.00 0.00 4.37
2979 3116 8.494433 AGATACTCAGCTTTATTGTTATGGGAA 58.506 33.333 0.00 0.00 0.00 3.97
2980 3117 9.120538 GATACTCAGCTTTATTGTTATGGGAAA 57.879 33.333 0.00 0.00 0.00 3.13
2981 3118 7.961326 ACTCAGCTTTATTGTTATGGGAAAT 57.039 32.000 0.00 0.00 0.00 2.17
2983 3120 9.125026 ACTCAGCTTTATTGTTATGGGAAATAG 57.875 33.333 0.00 0.00 0.00 1.73
2984 3121 8.463930 TCAGCTTTATTGTTATGGGAAATAGG 57.536 34.615 0.00 0.00 0.00 2.57
2985 3122 7.505585 TCAGCTTTATTGTTATGGGAAATAGGG 59.494 37.037 0.00 0.00 0.00 3.53
2986 3123 7.505585 CAGCTTTATTGTTATGGGAAATAGGGA 59.494 37.037 0.00 0.00 0.00 4.20
2987 3124 8.065007 AGCTTTATTGTTATGGGAAATAGGGAA 58.935 33.333 0.00 0.00 0.00 3.97
2988 3125 8.870116 GCTTTATTGTTATGGGAAATAGGGAAT 58.130 33.333 0.00 0.00 0.00 3.01
2991 3128 7.616528 ATTGTTATGGGAAATAGGGAATTGG 57.383 36.000 0.00 0.00 0.00 3.16
2992 3129 6.098716 TGTTATGGGAAATAGGGAATTGGT 57.901 37.500 0.00 0.00 0.00 3.67
2993 3130 6.507568 TGTTATGGGAAATAGGGAATTGGTT 58.492 36.000 0.00 0.00 0.00 3.67
2994 3131 6.382570 TGTTATGGGAAATAGGGAATTGGTTG 59.617 38.462 0.00 0.00 0.00 3.77
2995 3132 4.683766 TGGGAAATAGGGAATTGGTTGA 57.316 40.909 0.00 0.00 0.00 3.18
2996 3133 5.219468 TGGGAAATAGGGAATTGGTTGAT 57.781 39.130 0.00 0.00 0.00 2.57
2997 3134 4.961730 TGGGAAATAGGGAATTGGTTGATG 59.038 41.667 0.00 0.00 0.00 3.07
2998 3135 5.208121 GGGAAATAGGGAATTGGTTGATGA 58.792 41.667 0.00 0.00 0.00 2.92
2999 3136 5.660864 GGGAAATAGGGAATTGGTTGATGAA 59.339 40.000 0.00 0.00 0.00 2.57
3000 3137 6.156083 GGGAAATAGGGAATTGGTTGATGAAA 59.844 38.462 0.00 0.00 0.00 2.69
3001 3138 7.147497 GGGAAATAGGGAATTGGTTGATGAAAT 60.147 37.037 0.00 0.00 0.00 2.17
3002 3139 7.928167 GGAAATAGGGAATTGGTTGATGAAATC 59.072 37.037 0.00 0.00 45.83 2.17
3003 3140 8.613922 AAATAGGGAATTGGTTGATGAAATCT 57.386 30.769 0.00 0.00 45.81 2.40
3004 3141 5.927281 AGGGAATTGGTTGATGAAATCTG 57.073 39.130 0.00 0.00 45.81 2.90
3005 3142 5.582953 AGGGAATTGGTTGATGAAATCTGA 58.417 37.500 0.00 0.00 45.81 3.27
3006 3143 6.200114 AGGGAATTGGTTGATGAAATCTGAT 58.800 36.000 0.00 0.00 45.81 2.90
3007 3144 6.097839 AGGGAATTGGTTGATGAAATCTGATG 59.902 38.462 0.00 0.00 45.81 3.07
3008 3145 6.097270 GGGAATTGGTTGATGAAATCTGATGA 59.903 38.462 0.00 0.00 45.81 2.92
3009 3146 6.976925 GGAATTGGTTGATGAAATCTGATGAC 59.023 38.462 0.00 0.00 45.81 3.06
3010 3147 7.363181 GGAATTGGTTGATGAAATCTGATGACA 60.363 37.037 0.00 0.00 45.81 3.58
3011 3148 6.897706 TTGGTTGATGAAATCTGATGACAA 57.102 33.333 0.00 0.00 45.81 3.18
3012 3149 6.258230 TGGTTGATGAAATCTGATGACAAC 57.742 37.500 0.00 0.00 45.81 3.32
3013 3150 5.769162 TGGTTGATGAAATCTGATGACAACA 59.231 36.000 17.86 11.99 45.81 3.33
3014 3151 6.434965 TGGTTGATGAAATCTGATGACAACAT 59.565 34.615 17.86 9.56 45.81 2.71
3015 3152 6.750501 GGTTGATGAAATCTGATGACAACATG 59.249 38.462 17.86 0.00 45.81 3.21
3016 3153 7.362315 GGTTGATGAAATCTGATGACAACATGA 60.362 37.037 0.00 4.34 45.81 3.07
3017 3154 7.316544 TGATGAAATCTGATGACAACATGAG 57.683 36.000 0.00 0.00 45.81 2.90
3018 3155 7.107542 TGATGAAATCTGATGACAACATGAGA 58.892 34.615 0.00 0.00 46.87 3.27
3019 3156 7.608761 TGATGAAATCTGATGACAACATGAGAA 59.391 33.333 0.00 0.00 46.21 2.87
3020 3157 7.933215 TGAAATCTGATGACAACATGAGAAT 57.067 32.000 0.00 0.00 46.21 2.40
3021 3158 8.344446 TGAAATCTGATGACAACATGAGAATT 57.656 30.769 0.00 0.00 46.21 2.17
3022 3159 9.452287 TGAAATCTGATGACAACATGAGAATTA 57.548 29.630 0.00 0.00 46.21 1.40
3025 3162 9.676861 AATCTGATGACAACATGAGAATTAAGA 57.323 29.630 0.00 0.00 46.21 2.10
3026 3163 8.713737 TCTGATGACAACATGAGAATTAAGAG 57.286 34.615 0.00 0.00 42.04 2.85
3027 3164 8.316946 TCTGATGACAACATGAGAATTAAGAGT 58.683 33.333 0.00 0.00 42.04 3.24
3028 3165 8.484641 TGATGACAACATGAGAATTAAGAGTC 57.515 34.615 0.00 0.00 36.82 3.36
3029 3166 8.316946 TGATGACAACATGAGAATTAAGAGTCT 58.683 33.333 0.00 0.00 36.82 3.24
3030 3167 9.160496 GATGACAACATGAGAATTAAGAGTCTT 57.840 33.333 10.87 10.87 36.82 3.01
3031 3168 8.908786 TGACAACATGAGAATTAAGAGTCTTT 57.091 30.769 11.40 0.00 28.79 2.52
3032 3169 9.342308 TGACAACATGAGAATTAAGAGTCTTTT 57.658 29.630 11.40 0.00 28.79 2.27
3094 3231 7.706281 AGTATAGATTCACTCATTTGCTTCG 57.294 36.000 0.00 0.00 0.00 3.79
3095 3232 7.268586 AGTATAGATTCACTCATTTGCTTCGT 58.731 34.615 0.00 0.00 0.00 3.85
3096 3233 8.414003 AGTATAGATTCACTCATTTGCTTCGTA 58.586 33.333 0.00 0.00 0.00 3.43
3097 3234 9.197694 GTATAGATTCACTCATTTGCTTCGTAT 57.802 33.333 0.00 0.00 0.00 3.06
3098 3235 6.355397 AGATTCACTCATTTGCTTCGTATG 57.645 37.500 0.00 0.00 0.00 2.39
3099 3236 5.877012 AGATTCACTCATTTGCTTCGTATGT 59.123 36.000 0.00 0.00 0.00 2.29
3100 3237 7.041721 AGATTCACTCATTTGCTTCGTATGTA 58.958 34.615 0.00 0.00 0.00 2.29
3101 3238 6.403333 TTCACTCATTTGCTTCGTATGTAC 57.597 37.500 0.00 0.00 0.00 2.90
3102 3239 5.720202 TCACTCATTTGCTTCGTATGTACT 58.280 37.500 0.00 0.00 0.00 2.73
3103 3240 5.805486 TCACTCATTTGCTTCGTATGTACTC 59.195 40.000 0.00 0.00 0.00 2.59
3104 3241 5.807520 CACTCATTTGCTTCGTATGTACTCT 59.192 40.000 0.00 0.00 0.00 3.24
3105 3242 6.020281 CACTCATTTGCTTCGTATGTACTCTC 60.020 42.308 0.00 0.00 0.00 3.20
3106 3243 6.127591 ACTCATTTGCTTCGTATGTACTCTCT 60.128 38.462 0.00 0.00 0.00 3.10
3107 3244 6.631016 TCATTTGCTTCGTATGTACTCTCTT 58.369 36.000 0.00 0.00 0.00 2.85
3108 3245 7.768240 TCATTTGCTTCGTATGTACTCTCTTA 58.232 34.615 0.00 0.00 0.00 2.10
3109 3246 8.414003 TCATTTGCTTCGTATGTACTCTCTTAT 58.586 33.333 0.00 0.00 0.00 1.73
3110 3247 9.035607 CATTTGCTTCGTATGTACTCTCTTATT 57.964 33.333 0.00 0.00 0.00 1.40
3111 3248 7.987268 TTGCTTCGTATGTACTCTCTTATTG 57.013 36.000 0.00 0.00 0.00 1.90
3112 3249 7.329588 TGCTTCGTATGTACTCTCTTATTGA 57.670 36.000 0.00 0.00 0.00 2.57
3113 3250 7.768240 TGCTTCGTATGTACTCTCTTATTGAA 58.232 34.615 0.00 0.00 0.00 2.69
3114 3251 8.248253 TGCTTCGTATGTACTCTCTTATTGAAA 58.752 33.333 0.00 0.00 0.00 2.69
3115 3252 9.250624 GCTTCGTATGTACTCTCTTATTGAAAT 57.749 33.333 0.00 0.00 0.00 2.17
3248 3385 9.419297 TGGAACATATATGACTTATTACTTCGC 57.581 33.333 19.63 4.73 0.00 4.70
3249 3386 9.419297 GGAACATATATGACTTATTACTTCGCA 57.581 33.333 19.63 0.00 0.00 5.10
3306 3443 7.964604 AGATGTTTTGTAGGTTAGTTCAGTC 57.035 36.000 0.00 0.00 0.00 3.51
3307 3444 7.736893 AGATGTTTTGTAGGTTAGTTCAGTCT 58.263 34.615 0.00 0.00 0.00 3.24
3308 3445 8.867097 AGATGTTTTGTAGGTTAGTTCAGTCTA 58.133 33.333 0.00 0.00 0.00 2.59
3309 3446 9.485206 GATGTTTTGTAGGTTAGTTCAGTCTAA 57.515 33.333 0.00 0.00 0.00 2.10
3310 3447 9.841295 ATGTTTTGTAGGTTAGTTCAGTCTAAA 57.159 29.630 0.00 0.00 32.70 1.85
3311 3448 9.669887 TGTTTTGTAGGTTAGTTCAGTCTAAAA 57.330 29.630 0.00 0.00 32.70 1.52
3314 3451 9.669887 TTTGTAGGTTAGTTCAGTCTAAAAACA 57.330 29.630 0.00 0.00 32.70 2.83
3315 3452 9.841295 TTGTAGGTTAGTTCAGTCTAAAAACAT 57.159 29.630 0.00 0.00 32.70 2.71
3316 3453 9.841295 TGTAGGTTAGTTCAGTCTAAAAACATT 57.159 29.630 0.00 0.00 32.70 2.71
3353 3490 9.896645 ACACAGAGATAGAATTTGATTATGTGT 57.103 29.630 0.00 0.00 40.91 3.72
3455 3592 5.458041 TTATATGTTGAGGTACGTAGGCC 57.542 43.478 0.00 0.00 0.00 5.19
3456 3593 1.861982 ATGTTGAGGTACGTAGGCCT 58.138 50.000 11.78 11.78 39.53 5.19
3457 3594 1.636148 TGTTGAGGTACGTAGGCCTT 58.364 50.000 12.58 0.00 37.16 4.35
3458 3595 2.806434 TGTTGAGGTACGTAGGCCTTA 58.194 47.619 12.58 0.00 37.16 2.69
3459 3596 3.368248 TGTTGAGGTACGTAGGCCTTAT 58.632 45.455 12.58 0.00 37.16 1.73
3460 3597 3.382546 TGTTGAGGTACGTAGGCCTTATC 59.617 47.826 12.58 0.00 37.16 1.75
3461 3598 2.224606 TGAGGTACGTAGGCCTTATCG 58.775 52.381 12.58 16.55 37.16 2.92
3462 3599 0.957362 AGGTACGTAGGCCTTATCGC 59.043 55.000 12.58 0.00 33.51 4.58
3463 3600 0.670162 GGTACGTAGGCCTTATCGCA 59.330 55.000 12.58 1.61 0.00 5.10
3464 3601 1.271656 GGTACGTAGGCCTTATCGCAT 59.728 52.381 12.58 1.93 0.00 4.73
3465 3602 2.288640 GGTACGTAGGCCTTATCGCATT 60.289 50.000 12.58 1.21 0.00 3.56
3466 3603 1.865865 ACGTAGGCCTTATCGCATTG 58.134 50.000 12.58 0.00 0.00 2.82
3467 3604 1.138266 ACGTAGGCCTTATCGCATTGT 59.862 47.619 12.58 0.00 0.00 2.71
3468 3605 1.526887 CGTAGGCCTTATCGCATTGTG 59.473 52.381 12.58 0.00 0.00 3.33
3469 3606 2.801699 CGTAGGCCTTATCGCATTGTGA 60.802 50.000 12.58 1.78 0.00 3.58
3470 3607 1.959042 AGGCCTTATCGCATTGTGAG 58.041 50.000 0.00 0.00 0.00 3.51
3471 3608 0.947244 GGCCTTATCGCATTGTGAGG 59.053 55.000 6.05 3.16 0.00 3.86
3472 3609 1.668419 GCCTTATCGCATTGTGAGGT 58.332 50.000 6.05 0.00 0.00 3.85
3473 3610 1.331756 GCCTTATCGCATTGTGAGGTG 59.668 52.381 6.05 0.00 0.00 4.00
3474 3611 1.942657 CCTTATCGCATTGTGAGGTGG 59.057 52.381 6.05 3.90 0.00 4.61
3475 3612 2.419990 CCTTATCGCATTGTGAGGTGGA 60.420 50.000 6.05 0.00 0.00 4.02
3476 3613 3.270027 CTTATCGCATTGTGAGGTGGAA 58.730 45.455 6.05 0.00 0.00 3.53
3477 3614 2.425143 ATCGCATTGTGAGGTGGAAT 57.575 45.000 6.05 0.00 0.00 3.01
3478 3615 1.452110 TCGCATTGTGAGGTGGAATG 58.548 50.000 0.00 0.00 0.00 2.67
3479 3616 0.179156 CGCATTGTGAGGTGGAATGC 60.179 55.000 0.00 0.00 45.57 3.56
3480 3617 1.180029 GCATTGTGAGGTGGAATGCT 58.820 50.000 0.00 0.00 45.57 3.79
3481 3618 1.547372 GCATTGTGAGGTGGAATGCTT 59.453 47.619 0.00 0.00 45.57 3.91
3482 3619 2.754552 GCATTGTGAGGTGGAATGCTTA 59.245 45.455 0.00 0.00 45.57 3.09
3483 3620 3.428045 GCATTGTGAGGTGGAATGCTTAC 60.428 47.826 0.00 0.00 45.57 2.34
3484 3621 3.500448 TTGTGAGGTGGAATGCTTACA 57.500 42.857 0.00 0.00 0.00 2.41
3485 3622 2.778299 TGTGAGGTGGAATGCTTACAC 58.222 47.619 3.44 3.44 0.00 2.90
3486 3623 1.732259 GTGAGGTGGAATGCTTACACG 59.268 52.381 5.52 0.00 36.02 4.49
3487 3624 1.346395 TGAGGTGGAATGCTTACACGT 59.654 47.619 6.27 6.27 36.02 4.49
3488 3625 2.224426 TGAGGTGGAATGCTTACACGTT 60.224 45.455 7.56 0.00 36.02 3.99
3489 3626 2.151202 AGGTGGAATGCTTACACGTTG 58.849 47.619 5.52 0.00 36.02 4.10
3490 3627 2.147958 GGTGGAATGCTTACACGTTGA 58.852 47.619 5.52 0.00 36.02 3.18
3491 3628 2.747446 GGTGGAATGCTTACACGTTGAT 59.253 45.455 5.52 0.00 36.02 2.57
3492 3629 3.426159 GGTGGAATGCTTACACGTTGATG 60.426 47.826 5.52 0.00 36.02 3.07
3493 3630 3.188460 GTGGAATGCTTACACGTTGATGT 59.812 43.478 0.00 0.00 36.56 3.06
3494 3631 3.818210 TGGAATGCTTACACGTTGATGTT 59.182 39.130 0.00 0.00 33.85 2.71
3495 3632 4.998033 TGGAATGCTTACACGTTGATGTTA 59.002 37.500 0.00 0.00 33.85 2.41
3496 3633 5.470437 TGGAATGCTTACACGTTGATGTTAA 59.530 36.000 0.00 0.00 33.85 2.01
3497 3634 6.150307 TGGAATGCTTACACGTTGATGTTAAT 59.850 34.615 0.00 0.00 33.85 1.40
3498 3635 7.027161 GGAATGCTTACACGTTGATGTTAATT 58.973 34.615 0.00 0.00 33.85 1.40
3499 3636 7.218204 GGAATGCTTACACGTTGATGTTAATTC 59.782 37.037 0.00 0.00 33.85 2.17
3500 3637 5.613812 TGCTTACACGTTGATGTTAATTCG 58.386 37.500 0.00 0.00 33.85 3.34
3501 3638 5.405873 TGCTTACACGTTGATGTTAATTCGA 59.594 36.000 0.00 0.00 33.85 3.71
3502 3639 6.073711 TGCTTACACGTTGATGTTAATTCGAA 60.074 34.615 0.00 0.00 33.85 3.71
3503 3640 6.793203 GCTTACACGTTGATGTTAATTCGAAA 59.207 34.615 0.00 0.00 33.85 3.46
3504 3641 7.321746 GCTTACACGTTGATGTTAATTCGAAAA 59.678 33.333 0.00 0.00 33.85 2.29
3505 3642 9.160576 CTTACACGTTGATGTTAATTCGAAAAA 57.839 29.630 0.00 0.00 33.85 1.94
3506 3643 9.666626 TTACACGTTGATGTTAATTCGAAAAAT 57.333 25.926 0.00 0.00 33.85 1.82
3508 3645 9.666626 ACACGTTGATGTTAATTCGAAAAATAA 57.333 25.926 0.00 0.00 0.00 1.40
3524 3661 9.015577 TCGAAAAATAAATCGTTTCCAATATGC 57.984 29.630 0.00 0.00 39.91 3.14
3525 3662 8.802856 CGAAAAATAAATCGTTTCCAATATGCA 58.197 29.630 0.00 0.00 34.48 3.96
3527 3664 9.868277 AAAAATAAATCGTTTCCAATATGCAGA 57.132 25.926 0.00 0.00 0.00 4.26
3528 3665 9.520204 AAAATAAATCGTTTCCAATATGCAGAG 57.480 29.630 0.00 0.00 0.00 3.35
3529 3666 5.505173 AAATCGTTTCCAATATGCAGAGG 57.495 39.130 0.00 0.00 0.00 3.69
3530 3667 3.904800 TCGTTTCCAATATGCAGAGGA 57.095 42.857 0.00 0.00 0.00 3.71
3531 3668 3.797039 TCGTTTCCAATATGCAGAGGAG 58.203 45.455 0.00 0.00 0.00 3.69
3532 3669 3.197766 TCGTTTCCAATATGCAGAGGAGT 59.802 43.478 0.00 0.00 0.00 3.85
3533 3670 4.404394 TCGTTTCCAATATGCAGAGGAGTA 59.596 41.667 0.00 0.00 0.00 2.59
3534 3671 4.508124 CGTTTCCAATATGCAGAGGAGTAC 59.492 45.833 0.00 0.00 0.00 2.73
3535 3672 5.428253 GTTTCCAATATGCAGAGGAGTACA 58.572 41.667 0.00 0.00 0.00 2.90
3536 3673 5.894298 TTCCAATATGCAGAGGAGTACAT 57.106 39.130 0.00 0.00 0.00 2.29
3537 3674 5.474578 TCCAATATGCAGAGGAGTACATC 57.525 43.478 0.00 0.00 0.00 3.06
3538 3675 5.150715 TCCAATATGCAGAGGAGTACATCT 58.849 41.667 0.00 0.00 37.67 2.90
3539 3676 5.244851 TCCAATATGCAGAGGAGTACATCTC 59.755 44.000 0.00 1.37 42.07 2.75
3540 3677 5.159925 CAATATGCAGAGGAGTACATCTCG 58.840 45.833 0.00 0.33 43.60 4.04
3541 3678 1.393603 TGCAGAGGAGTACATCTCGG 58.606 55.000 9.87 9.87 43.60 4.63
3542 3679 0.671251 GCAGAGGAGTACATCTCGGG 59.329 60.000 13.93 9.92 43.60 5.14
3543 3680 2.024825 GCAGAGGAGTACATCTCGGGT 61.025 57.143 13.93 0.00 43.60 5.28
3544 3681 1.950909 CAGAGGAGTACATCTCGGGTC 59.049 57.143 0.00 0.00 43.60 4.46
3545 3682 1.133730 AGAGGAGTACATCTCGGGTCC 60.134 57.143 0.00 0.00 43.60 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 1.171308 CTGATCCAAGCAACACCCTG 58.829 55.000 0.00 0.00 0.00 4.45
128 133 3.191162 TGCAATACTGATCCAAGCAACAC 59.809 43.478 0.00 0.00 0.00 3.32
190 195 7.765307 TCGACGATACCTGAAGTTTTACTTAT 58.235 34.615 0.00 0.00 38.80 1.73
245 250 4.817318 TTTTCTGTGGCAAAAACCTCTT 57.183 36.364 0.00 0.00 0.00 2.85
286 293 4.268359 AGATTGGCCTGTTTTTGCAAAAA 58.732 34.783 28.85 28.85 35.67 1.94
425 434 9.905171 AAATGCTACAAAGAGAAAGAATCTTTC 57.095 29.630 23.99 23.99 43.42 2.62
435 444 5.512753 TTGTGCAAATGCTACAAAGAGAA 57.487 34.783 15.85 0.00 42.66 2.87
468 477 4.330250 ACACTGAGAACCATTTGATCTGG 58.670 43.478 0.00 0.00 39.80 3.86
515 524 7.096640 CGTTTCTGCACTGAATTAACGAAAATT 60.097 33.333 0.00 0.00 32.65 1.82
592 610 1.953138 CAGCAGAATAGGCCTCGCG 60.953 63.158 9.68 0.00 0.00 5.87
896 930 5.470047 ACAAGTTTGAGGGAGTAGTAGTG 57.530 43.478 0.00 0.00 0.00 2.74
925 959 1.002684 ACGAGAACGCAGGATATCGAC 60.003 52.381 0.00 0.00 43.96 4.20
959 993 2.202743 CGCCTAGCTAGCACGCAA 60.203 61.111 18.83 0.00 0.00 4.85
1426 1472 2.267961 GACCGGCCTTCCACGAAT 59.732 61.111 0.00 0.00 0.00 3.34
1593 1639 4.226427 TGTCCAGAAGAAGATGAATGGG 57.774 45.455 0.00 0.00 0.00 4.00
1699 1749 1.740025 CGCCTCCTGTGGAAATTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
1777 1827 0.606401 GTGCCTGTGCTTCCAGCTTA 60.606 55.000 0.00 0.00 42.97 3.09
1908 2033 0.326238 AGGAGAACCAGGCGGGAATA 60.326 55.000 11.67 0.00 41.15 1.75
1987 2112 3.842923 CCTGCAGGAGTCGGCGAT 61.843 66.667 29.88 1.58 36.88 4.58
2055 2180 3.181471 CCTTGCTAATGGAGATGACGAGT 60.181 47.826 0.00 0.00 0.00 4.18
2062 2187 2.846206 TCACCACCTTGCTAATGGAGAT 59.154 45.455 5.31 0.00 36.94 2.75
2076 2201 3.560278 CCGCGCGTATTCACCACC 61.560 66.667 29.95 0.00 0.00 4.61
2077 2202 4.218478 GCCGCGCGTATTCACCAC 62.218 66.667 29.95 2.24 0.00 4.16
2078 2203 4.444838 AGCCGCGCGTATTCACCA 62.445 61.111 29.95 0.00 0.00 4.17
2097 2222 2.370349 AGTAGTATGCAGCGTGAGACT 58.630 47.619 0.00 0.00 0.00 3.24
2160 2285 3.730761 GCTCGCCACCTGCAAGTG 61.731 66.667 8.56 8.56 41.33 3.16
2172 2297 3.918220 CACGATCGGCTTGCTCGC 61.918 66.667 20.98 0.00 39.76 5.03
2251 2376 3.011085 CAGCTGTTGCCAAGAGACA 57.989 52.632 5.67 0.00 40.80 3.41
2326 2456 2.661866 GAGTCCTGCAACGCACGT 60.662 61.111 0.00 0.00 33.79 4.49
2510 2643 3.130160 AGGGTAGTCGTCGTCGGC 61.130 66.667 0.00 0.00 42.44 5.54
2530 2663 3.782443 CCCTACAGGACGGCCACC 61.782 72.222 11.69 5.58 38.24 4.61
2595 2728 6.260050 GGCCATGAGAACGAAGATTTACATAA 59.740 38.462 0.00 0.00 0.00 1.90
2606 2739 0.400213 AACAGGGCCATGAGAACGAA 59.600 50.000 26.87 0.00 0.00 3.85
2644 2777 3.585862 TCGTCATAACAGAAAGAGCCAC 58.414 45.455 0.00 0.00 0.00 5.01
2708 2842 0.602905 ACAAGCTAGACCGCAACACC 60.603 55.000 0.00 0.00 0.00 4.16
2759 2893 3.187700 GAGTATTACAACCACCTCGCAG 58.812 50.000 0.00 0.00 0.00 5.18
2762 2896 2.805845 CCGAGTATTACAACCACCTCG 58.194 52.381 0.00 0.00 0.00 4.63
2864 3001 4.410555 GGATCTCAACCCCTCTCAAACTAT 59.589 45.833 0.00 0.00 0.00 2.12
2865 3002 3.775316 GGATCTCAACCCCTCTCAAACTA 59.225 47.826 0.00 0.00 0.00 2.24
2866 3003 2.573915 GGATCTCAACCCCTCTCAAACT 59.426 50.000 0.00 0.00 0.00 2.66
2867 3004 2.573915 AGGATCTCAACCCCTCTCAAAC 59.426 50.000 0.00 0.00 0.00 2.93
2868 3005 2.921221 AGGATCTCAACCCCTCTCAAA 58.079 47.619 0.00 0.00 0.00 2.69
2869 3006 2.649742 AGGATCTCAACCCCTCTCAA 57.350 50.000 0.00 0.00 0.00 3.02
2870 3007 2.649742 AAGGATCTCAACCCCTCTCA 57.350 50.000 0.00 0.00 0.00 3.27
2871 3008 3.775316 TGTAAAGGATCTCAACCCCTCTC 59.225 47.826 0.00 0.00 0.00 3.20
2872 3009 3.777522 CTGTAAAGGATCTCAACCCCTCT 59.222 47.826 0.00 0.00 0.00 3.69
2873 3010 3.519913 ACTGTAAAGGATCTCAACCCCTC 59.480 47.826 0.00 0.00 0.00 4.30
2874 3011 3.264450 CACTGTAAAGGATCTCAACCCCT 59.736 47.826 0.00 0.00 0.00 4.79
2875 3012 3.610911 CACTGTAAAGGATCTCAACCCC 58.389 50.000 0.00 0.00 0.00 4.95
2876 3013 3.010420 GCACTGTAAAGGATCTCAACCC 58.990 50.000 0.00 0.00 0.00 4.11
2877 3014 3.674997 TGCACTGTAAAGGATCTCAACC 58.325 45.455 0.00 0.00 0.00 3.77
2878 3015 4.153117 CACTGCACTGTAAAGGATCTCAAC 59.847 45.833 0.00 0.00 0.00 3.18
2879 3016 4.318332 CACTGCACTGTAAAGGATCTCAA 58.682 43.478 0.00 0.00 0.00 3.02
2880 3017 3.866066 GCACTGCACTGTAAAGGATCTCA 60.866 47.826 0.00 0.00 0.00 3.27
2881 3018 2.675348 GCACTGCACTGTAAAGGATCTC 59.325 50.000 0.00 0.00 0.00 2.75
2882 3019 2.038952 TGCACTGCACTGTAAAGGATCT 59.961 45.455 0.00 0.00 31.71 2.75
2883 3020 2.417933 CTGCACTGCACTGTAAAGGATC 59.582 50.000 0.00 0.00 33.79 3.36
2884 3021 2.038952 TCTGCACTGCACTGTAAAGGAT 59.961 45.455 0.00 0.00 33.79 3.24
2885 3022 1.416030 TCTGCACTGCACTGTAAAGGA 59.584 47.619 0.00 0.00 33.79 3.36
2886 3023 1.882912 TCTGCACTGCACTGTAAAGG 58.117 50.000 0.00 0.00 33.79 3.11
2887 3024 3.069289 TGATCTGCACTGCACTGTAAAG 58.931 45.455 0.00 0.00 33.79 1.85
2888 3025 2.807967 GTGATCTGCACTGCACTGTAAA 59.192 45.455 0.00 0.00 44.27 2.01
2889 3026 2.416747 GTGATCTGCACTGCACTGTAA 58.583 47.619 0.00 0.00 44.27 2.41
2890 3027 1.338105 GGTGATCTGCACTGCACTGTA 60.338 52.381 0.00 0.00 46.86 2.74
2891 3028 0.604780 GGTGATCTGCACTGCACTGT 60.605 55.000 0.00 0.00 46.86 3.55
2892 3029 0.604511 TGGTGATCTGCACTGCACTG 60.605 55.000 0.00 0.00 46.86 3.66
2893 3030 0.109153 TTGGTGATCTGCACTGCACT 59.891 50.000 0.00 0.00 46.86 4.40
2894 3031 0.520404 CTTGGTGATCTGCACTGCAC 59.480 55.000 0.00 0.00 46.86 4.57
2895 3032 0.109153 ACTTGGTGATCTGCACTGCA 59.891 50.000 3.11 3.11 46.86 4.41
2896 3033 0.520404 CACTTGGTGATCTGCACTGC 59.480 55.000 0.00 0.00 46.86 4.40
2897 3034 1.162698 CCACTTGGTGATCTGCACTG 58.837 55.000 0.00 0.00 46.86 3.66
2898 3035 0.037303 CCCACTTGGTGATCTGCACT 59.963 55.000 0.00 0.00 46.86 4.40
2899 3036 0.962356 CCCCACTTGGTGATCTGCAC 60.962 60.000 0.00 0.00 46.98 4.57
2900 3037 1.379916 CCCCACTTGGTGATCTGCA 59.620 57.895 0.00 0.00 35.23 4.41
2901 3038 1.379044 CCCCCACTTGGTGATCTGC 60.379 63.158 0.00 0.00 35.23 4.26
2902 3039 0.035056 GACCCCCACTTGGTGATCTG 60.035 60.000 0.00 0.00 35.85 2.90
2903 3040 1.553690 CGACCCCCACTTGGTGATCT 61.554 60.000 0.00 0.00 35.85 2.75
2904 3041 1.078426 CGACCCCCACTTGGTGATC 60.078 63.158 0.00 0.00 35.85 2.92
2905 3042 2.602676 CCGACCCCCACTTGGTGAT 61.603 63.158 0.00 0.00 35.85 3.06
2906 3043 3.246112 CCGACCCCCACTTGGTGA 61.246 66.667 0.00 0.00 35.85 4.02
2907 3044 4.344865 CCCGACCCCCACTTGGTG 62.345 72.222 0.00 0.00 35.85 4.17
2908 3045 4.912299 ACCCGACCCCCACTTGGT 62.912 66.667 0.00 0.00 39.32 3.67
2909 3046 4.029809 GACCCGACCCCCACTTGG 62.030 72.222 0.00 0.00 0.00 3.61
2910 3047 3.246112 TGACCCGACCCCCACTTG 61.246 66.667 0.00 0.00 0.00 3.16
2911 3048 2.928396 CTGACCCGACCCCCACTT 60.928 66.667 0.00 0.00 0.00 3.16
2915 3052 3.699134 GATTGCTGACCCGACCCCC 62.699 68.421 0.00 0.00 0.00 5.40
2916 3053 2.124695 GATTGCTGACCCGACCCC 60.125 66.667 0.00 0.00 0.00 4.95
2917 3054 2.511600 CGATTGCTGACCCGACCC 60.512 66.667 0.00 0.00 0.00 4.46
2918 3055 2.100631 CACGATTGCTGACCCGACC 61.101 63.158 0.00 0.00 0.00 4.79
2919 3056 2.740714 GCACGATTGCTGACCCGAC 61.741 63.158 0.00 0.00 46.17 4.79
2920 3057 2.434185 GCACGATTGCTGACCCGA 60.434 61.111 0.00 0.00 46.17 5.14
2929 3066 5.630061 TGTAGTTTCATTGATGCACGATTG 58.370 37.500 0.00 0.00 0.00 2.67
2930 3067 5.878332 TGTAGTTTCATTGATGCACGATT 57.122 34.783 0.00 0.00 0.00 3.34
2931 3068 5.643348 TCTTGTAGTTTCATTGATGCACGAT 59.357 36.000 0.00 0.00 0.00 3.73
2932 3069 4.994217 TCTTGTAGTTTCATTGATGCACGA 59.006 37.500 0.00 0.00 0.00 4.35
2933 3070 5.281693 TCTTGTAGTTTCATTGATGCACG 57.718 39.130 0.00 0.00 0.00 5.34
2934 3071 7.978982 AGTATCTTGTAGTTTCATTGATGCAC 58.021 34.615 0.00 0.00 0.00 4.57
2935 3072 7.823799 TGAGTATCTTGTAGTTTCATTGATGCA 59.176 33.333 0.00 0.00 34.92 3.96
2936 3073 8.201554 TGAGTATCTTGTAGTTTCATTGATGC 57.798 34.615 0.00 0.00 34.92 3.91
2937 3074 8.333908 GCTGAGTATCTTGTAGTTTCATTGATG 58.666 37.037 0.00 0.00 34.92 3.07
2938 3075 8.263640 AGCTGAGTATCTTGTAGTTTCATTGAT 58.736 33.333 0.00 0.00 34.92 2.57
2939 3076 7.615403 AGCTGAGTATCTTGTAGTTTCATTGA 58.385 34.615 0.00 0.00 34.92 2.57
2940 3077 7.840342 AGCTGAGTATCTTGTAGTTTCATTG 57.160 36.000 0.00 0.00 34.92 2.82
2941 3078 8.854614 AAAGCTGAGTATCTTGTAGTTTCATT 57.145 30.769 0.00 0.00 34.92 2.57
2943 3080 9.944376 AATAAAGCTGAGTATCTTGTAGTTTCA 57.056 29.630 0.00 0.00 34.92 2.69
2945 3082 9.726438 ACAATAAAGCTGAGTATCTTGTAGTTT 57.274 29.630 0.00 0.00 34.92 2.66
2946 3083 9.726438 AACAATAAAGCTGAGTATCTTGTAGTT 57.274 29.630 0.00 0.00 34.92 2.24
2950 3087 9.113838 CCATAACAATAAAGCTGAGTATCTTGT 57.886 33.333 0.00 0.00 34.92 3.16
2951 3088 8.562892 CCCATAACAATAAAGCTGAGTATCTTG 58.437 37.037 0.00 0.00 34.92 3.02
2952 3089 8.494433 TCCCATAACAATAAAGCTGAGTATCTT 58.506 33.333 0.00 0.00 34.92 2.40
2953 3090 8.034313 TCCCATAACAATAAAGCTGAGTATCT 57.966 34.615 0.00 0.00 34.92 1.98
2954 3091 8.677148 TTCCCATAACAATAAAGCTGAGTATC 57.323 34.615 0.00 0.00 0.00 2.24
2955 3092 9.646522 ATTTCCCATAACAATAAAGCTGAGTAT 57.353 29.630 0.00 0.00 0.00 2.12
2957 3094 7.961326 ATTTCCCATAACAATAAAGCTGAGT 57.039 32.000 0.00 0.00 0.00 3.41
2958 3095 8.571336 CCTATTTCCCATAACAATAAAGCTGAG 58.429 37.037 0.00 0.00 0.00 3.35
2959 3096 7.505585 CCCTATTTCCCATAACAATAAAGCTGA 59.494 37.037 0.00 0.00 0.00 4.26
2960 3097 7.505585 TCCCTATTTCCCATAACAATAAAGCTG 59.494 37.037 0.00 0.00 0.00 4.24
2961 3098 7.591821 TCCCTATTTCCCATAACAATAAAGCT 58.408 34.615 0.00 0.00 0.00 3.74
2962 3099 7.833285 TCCCTATTTCCCATAACAATAAAGC 57.167 36.000 0.00 0.00 0.00 3.51
2965 3102 9.153479 CCAATTCCCTATTTCCCATAACAATAA 57.847 33.333 0.00 0.00 0.00 1.40
2966 3103 8.293216 ACCAATTCCCTATTTCCCATAACAATA 58.707 33.333 0.00 0.00 0.00 1.90
2967 3104 7.138934 ACCAATTCCCTATTTCCCATAACAAT 58.861 34.615 0.00 0.00 0.00 2.71
2968 3105 6.507568 ACCAATTCCCTATTTCCCATAACAA 58.492 36.000 0.00 0.00 0.00 2.83
2969 3106 6.098716 ACCAATTCCCTATTTCCCATAACA 57.901 37.500 0.00 0.00 0.00 2.41
2970 3107 6.609616 TCAACCAATTCCCTATTTCCCATAAC 59.390 38.462 0.00 0.00 0.00 1.89
2971 3108 6.746894 TCAACCAATTCCCTATTTCCCATAA 58.253 36.000 0.00 0.00 0.00 1.90
2972 3109 6.348478 TCAACCAATTCCCTATTTCCCATA 57.652 37.500 0.00 0.00 0.00 2.74
2973 3110 5.219468 TCAACCAATTCCCTATTTCCCAT 57.781 39.130 0.00 0.00 0.00 4.00
2974 3111 4.683766 TCAACCAATTCCCTATTTCCCA 57.316 40.909 0.00 0.00 0.00 4.37
2975 3112 5.208121 TCATCAACCAATTCCCTATTTCCC 58.792 41.667 0.00 0.00 0.00 3.97
2976 3113 6.790232 TTCATCAACCAATTCCCTATTTCC 57.210 37.500 0.00 0.00 0.00 3.13
2977 3114 8.699130 AGATTTCATCAACCAATTCCCTATTTC 58.301 33.333 0.00 0.00 0.00 2.17
2978 3115 8.480501 CAGATTTCATCAACCAATTCCCTATTT 58.519 33.333 0.00 0.00 0.00 1.40
2979 3116 7.840716 TCAGATTTCATCAACCAATTCCCTATT 59.159 33.333 0.00 0.00 0.00 1.73
2980 3117 7.356680 TCAGATTTCATCAACCAATTCCCTAT 58.643 34.615 0.00 0.00 0.00 2.57
2981 3118 6.730447 TCAGATTTCATCAACCAATTCCCTA 58.270 36.000 0.00 0.00 0.00 3.53
2982 3119 5.582953 TCAGATTTCATCAACCAATTCCCT 58.417 37.500 0.00 0.00 0.00 4.20
2983 3120 5.920193 TCAGATTTCATCAACCAATTCCC 57.080 39.130 0.00 0.00 0.00 3.97
2984 3121 6.976925 GTCATCAGATTTCATCAACCAATTCC 59.023 38.462 0.00 0.00 0.00 3.01
2985 3122 7.541162 TGTCATCAGATTTCATCAACCAATTC 58.459 34.615 0.00 0.00 0.00 2.17
2986 3123 7.470935 TGTCATCAGATTTCATCAACCAATT 57.529 32.000 0.00 0.00 0.00 2.32
2987 3124 7.039574 TGTTGTCATCAGATTTCATCAACCAAT 60.040 33.333 0.00 0.00 34.84 3.16
2988 3125 6.264970 TGTTGTCATCAGATTTCATCAACCAA 59.735 34.615 0.00 0.00 34.84 3.67
2989 3126 5.769162 TGTTGTCATCAGATTTCATCAACCA 59.231 36.000 0.00 0.00 34.84 3.67
2990 3127 6.258230 TGTTGTCATCAGATTTCATCAACC 57.742 37.500 0.00 0.00 34.84 3.77
2991 3128 7.532571 TCATGTTGTCATCAGATTTCATCAAC 58.467 34.615 0.00 0.00 35.83 3.18
2992 3129 7.608761 TCTCATGTTGTCATCAGATTTCATCAA 59.391 33.333 0.00 0.00 26.58 2.57
2993 3130 7.107542 TCTCATGTTGTCATCAGATTTCATCA 58.892 34.615 0.00 0.00 26.58 3.07
2994 3131 7.549615 TCTCATGTTGTCATCAGATTTCATC 57.450 36.000 0.00 0.00 26.58 2.92
2995 3132 7.933215 TTCTCATGTTGTCATCAGATTTCAT 57.067 32.000 0.00 0.00 31.66 2.57
2996 3133 7.933215 ATTCTCATGTTGTCATCAGATTTCA 57.067 32.000 0.00 0.00 31.66 2.69
2999 3136 9.676861 TCTTAATTCTCATGTTGTCATCAGATT 57.323 29.630 0.00 0.00 31.66 2.40
3000 3137 9.327628 CTCTTAATTCTCATGTTGTCATCAGAT 57.672 33.333 0.00 0.00 31.66 2.90
3001 3138 8.316946 ACTCTTAATTCTCATGTTGTCATCAGA 58.683 33.333 0.00 0.00 29.61 3.27
3002 3139 8.489990 ACTCTTAATTCTCATGTTGTCATCAG 57.510 34.615 0.00 0.00 31.15 2.90
3003 3140 8.316946 AGACTCTTAATTCTCATGTTGTCATCA 58.683 33.333 0.00 0.00 31.15 3.07
3004 3141 8.715191 AGACTCTTAATTCTCATGTTGTCATC 57.285 34.615 0.00 0.00 31.15 2.92
3005 3142 9.512588 AAAGACTCTTAATTCTCATGTTGTCAT 57.487 29.630 0.00 0.00 34.21 3.06
3006 3143 8.908786 AAAGACTCTTAATTCTCATGTTGTCA 57.091 30.769 0.00 0.00 0.00 3.58
3068 3205 9.249457 CGAAGCAAATGAGTGAATCTATACTTA 57.751 33.333 0.00 0.00 0.00 2.24
3069 3206 7.766278 ACGAAGCAAATGAGTGAATCTATACTT 59.234 33.333 0.00 0.00 0.00 2.24
3070 3207 7.268586 ACGAAGCAAATGAGTGAATCTATACT 58.731 34.615 0.00 0.00 0.00 2.12
3071 3208 7.470289 ACGAAGCAAATGAGTGAATCTATAC 57.530 36.000 0.00 0.00 0.00 1.47
3072 3209 9.196552 CATACGAAGCAAATGAGTGAATCTATA 57.803 33.333 0.00 0.00 0.00 1.31
3073 3210 7.712639 ACATACGAAGCAAATGAGTGAATCTAT 59.287 33.333 0.00 0.00 0.00 1.98
3074 3211 7.041721 ACATACGAAGCAAATGAGTGAATCTA 58.958 34.615 0.00 0.00 0.00 1.98
3075 3212 5.877012 ACATACGAAGCAAATGAGTGAATCT 59.123 36.000 0.00 0.00 0.00 2.40
3076 3213 6.111768 ACATACGAAGCAAATGAGTGAATC 57.888 37.500 0.00 0.00 0.00 2.52
3077 3214 6.818644 AGTACATACGAAGCAAATGAGTGAAT 59.181 34.615 0.00 0.00 0.00 2.57
3078 3215 6.163476 AGTACATACGAAGCAAATGAGTGAA 58.837 36.000 0.00 0.00 0.00 3.18
3079 3216 5.720202 AGTACATACGAAGCAAATGAGTGA 58.280 37.500 0.00 0.00 0.00 3.41
3080 3217 5.807520 AGAGTACATACGAAGCAAATGAGTG 59.192 40.000 0.00 0.00 0.00 3.51
3081 3218 5.967088 AGAGTACATACGAAGCAAATGAGT 58.033 37.500 0.00 0.00 0.00 3.41
3082 3219 6.269315 AGAGAGTACATACGAAGCAAATGAG 58.731 40.000 0.00 0.00 0.00 2.90
3083 3220 6.208988 AGAGAGTACATACGAAGCAAATGA 57.791 37.500 0.00 0.00 0.00 2.57
3084 3221 6.893958 AAGAGAGTACATACGAAGCAAATG 57.106 37.500 0.00 0.00 0.00 2.32
3085 3222 9.035607 CAATAAGAGAGTACATACGAAGCAAAT 57.964 33.333 0.00 0.00 0.00 2.32
3086 3223 8.248253 TCAATAAGAGAGTACATACGAAGCAAA 58.752 33.333 0.00 0.00 0.00 3.68
3087 3224 7.768240 TCAATAAGAGAGTACATACGAAGCAA 58.232 34.615 0.00 0.00 0.00 3.91
3088 3225 7.329588 TCAATAAGAGAGTACATACGAAGCA 57.670 36.000 0.00 0.00 0.00 3.91
3089 3226 8.630278 TTTCAATAAGAGAGTACATACGAAGC 57.370 34.615 0.00 0.00 0.00 3.86
3198 3335 9.943163 CCAAATTTTGGTATTTTTCGTTCAATT 57.057 25.926 18.34 0.00 45.93 2.32
3222 3359 9.419297 GCGAAGTAATAAGTCATATATGTTCCA 57.581 33.333 12.42 0.00 0.00 3.53
3223 3360 9.419297 TGCGAAGTAATAAGTCATATATGTTCC 57.581 33.333 12.42 2.75 0.00 3.62
3280 3417 9.485206 GACTGAACTAACCTACAAAACATCTTA 57.515 33.333 0.00 0.00 0.00 2.10
3281 3418 8.211629 AGACTGAACTAACCTACAAAACATCTT 58.788 33.333 0.00 0.00 0.00 2.40
3282 3419 7.736893 AGACTGAACTAACCTACAAAACATCT 58.263 34.615 0.00 0.00 0.00 2.90
3283 3420 7.964604 AGACTGAACTAACCTACAAAACATC 57.035 36.000 0.00 0.00 0.00 3.06
3284 3421 9.841295 TTTAGACTGAACTAACCTACAAAACAT 57.159 29.630 0.00 0.00 32.99 2.71
3285 3422 9.669887 TTTTAGACTGAACTAACCTACAAAACA 57.330 29.630 0.00 0.00 32.99 2.83
3288 3425 9.669887 TGTTTTTAGACTGAACTAACCTACAAA 57.330 29.630 0.00 0.00 32.99 2.83
3289 3426 9.841295 ATGTTTTTAGACTGAACTAACCTACAA 57.159 29.630 0.00 0.00 32.99 2.41
3290 3427 9.841295 AATGTTTTTAGACTGAACTAACCTACA 57.159 29.630 0.00 0.00 32.99 2.74
3327 3464 9.896645 ACACATAATCAAATTCTATCTCTGTGT 57.103 29.630 0.00 0.00 37.92 3.72
3342 3479 9.695526 ACGTACTTTACAACTACACATAATCAA 57.304 29.630 0.00 0.00 0.00 2.57
3429 3566 8.255905 GGCCTACGTACCTCAACATATAATTAT 58.744 37.037 2.97 2.97 0.00 1.28
3430 3567 7.452501 AGGCCTACGTACCTCAACATATAATTA 59.547 37.037 1.29 0.00 0.00 1.40
3431 3568 6.269307 AGGCCTACGTACCTCAACATATAATT 59.731 38.462 1.29 0.00 0.00 1.40
3432 3569 5.778750 AGGCCTACGTACCTCAACATATAAT 59.221 40.000 1.29 0.00 0.00 1.28
3433 3570 5.142639 AGGCCTACGTACCTCAACATATAA 58.857 41.667 1.29 0.00 0.00 0.98
3434 3571 4.733165 AGGCCTACGTACCTCAACATATA 58.267 43.478 1.29 0.00 0.00 0.86
3435 3572 3.573695 AGGCCTACGTACCTCAACATAT 58.426 45.455 1.29 0.00 0.00 1.78
3436 3573 3.022557 AGGCCTACGTACCTCAACATA 57.977 47.619 1.29 0.00 0.00 2.29
3437 3574 1.861982 AGGCCTACGTACCTCAACAT 58.138 50.000 1.29 0.00 0.00 2.71
3438 3575 1.636148 AAGGCCTACGTACCTCAACA 58.364 50.000 5.16 0.00 34.31 3.33
3439 3576 3.549625 CGATAAGGCCTACGTACCTCAAC 60.550 52.174 5.16 0.62 34.31 3.18
3440 3577 2.620115 CGATAAGGCCTACGTACCTCAA 59.380 50.000 5.16 0.00 34.31 3.02
3441 3578 2.224606 CGATAAGGCCTACGTACCTCA 58.775 52.381 5.16 0.00 34.31 3.86
3442 3579 1.068679 GCGATAAGGCCTACGTACCTC 60.069 57.143 21.68 7.07 34.31 3.85
3443 3580 0.957362 GCGATAAGGCCTACGTACCT 59.043 55.000 21.68 0.00 38.14 3.08
3444 3581 0.670162 TGCGATAAGGCCTACGTACC 59.330 55.000 21.68 10.59 0.00 3.34
3445 3582 2.719426 ATGCGATAAGGCCTACGTAC 57.281 50.000 21.68 8.07 0.00 3.67
3446 3583 2.363038 ACAATGCGATAAGGCCTACGTA 59.637 45.455 21.68 19.17 0.00 3.57
3447 3584 1.138266 ACAATGCGATAAGGCCTACGT 59.862 47.619 21.68 4.89 0.00 3.57
3448 3585 1.526887 CACAATGCGATAAGGCCTACG 59.473 52.381 5.16 14.13 0.00 3.51
3449 3586 2.802816 CTCACAATGCGATAAGGCCTAC 59.197 50.000 5.16 0.00 0.00 3.18
3450 3587 2.224281 CCTCACAATGCGATAAGGCCTA 60.224 50.000 5.16 0.00 0.00 3.93
3451 3588 1.475751 CCTCACAATGCGATAAGGCCT 60.476 52.381 0.00 0.00 0.00 5.19
3452 3589 0.947244 CCTCACAATGCGATAAGGCC 59.053 55.000 0.00 0.00 0.00 5.19
3453 3590 1.331756 CACCTCACAATGCGATAAGGC 59.668 52.381 0.00 0.00 0.00 4.35
3454 3591 1.942657 CCACCTCACAATGCGATAAGG 59.057 52.381 0.00 0.00 0.00 2.69
3455 3592 2.905075 TCCACCTCACAATGCGATAAG 58.095 47.619 0.00 0.00 0.00 1.73
3456 3593 3.342377 TTCCACCTCACAATGCGATAA 57.658 42.857 0.00 0.00 0.00 1.75
3457 3594 3.205338 CATTCCACCTCACAATGCGATA 58.795 45.455 0.00 0.00 0.00 2.92
3458 3595 2.019249 CATTCCACCTCACAATGCGAT 58.981 47.619 0.00 0.00 0.00 4.58
3459 3596 1.452110 CATTCCACCTCACAATGCGA 58.548 50.000 0.00 0.00 0.00 5.10
3460 3597 0.179156 GCATTCCACCTCACAATGCG 60.179 55.000 0.43 0.00 42.12 4.73
3461 3598 3.727419 GCATTCCACCTCACAATGC 57.273 52.632 0.43 0.43 44.07 3.56
3462 3599 3.758023 TGTAAGCATTCCACCTCACAATG 59.242 43.478 0.00 0.00 0.00 2.82
3463 3600 3.758554 GTGTAAGCATTCCACCTCACAAT 59.241 43.478 0.00 0.00 0.00 2.71
3464 3601 3.146066 GTGTAAGCATTCCACCTCACAA 58.854 45.455 0.00 0.00 0.00 3.33
3465 3602 2.778299 GTGTAAGCATTCCACCTCACA 58.222 47.619 0.00 0.00 0.00 3.58
3466 3603 1.732259 CGTGTAAGCATTCCACCTCAC 59.268 52.381 0.00 0.00 0.00 3.51
3467 3604 1.346395 ACGTGTAAGCATTCCACCTCA 59.654 47.619 0.00 0.00 0.00 3.86
3468 3605 2.094762 ACGTGTAAGCATTCCACCTC 57.905 50.000 0.00 0.00 0.00 3.85
3469 3606 2.151202 CAACGTGTAAGCATTCCACCT 58.849 47.619 0.00 0.00 0.00 4.00
3470 3607 2.147958 TCAACGTGTAAGCATTCCACC 58.852 47.619 0.00 0.00 0.00 4.61
3471 3608 3.188460 ACATCAACGTGTAAGCATTCCAC 59.812 43.478 0.00 0.00 0.00 4.02
3472 3609 3.407698 ACATCAACGTGTAAGCATTCCA 58.592 40.909 0.00 0.00 0.00 3.53
3473 3610 4.419522 AACATCAACGTGTAAGCATTCC 57.580 40.909 0.00 0.00 0.00 3.01
3474 3611 7.045612 CGAATTAACATCAACGTGTAAGCATTC 60.046 37.037 0.00 0.00 0.00 2.67
3475 3612 6.740905 CGAATTAACATCAACGTGTAAGCATT 59.259 34.615 0.00 0.00 0.00 3.56
3476 3613 6.091577 TCGAATTAACATCAACGTGTAAGCAT 59.908 34.615 0.00 0.00 0.00 3.79
3477 3614 5.405873 TCGAATTAACATCAACGTGTAAGCA 59.594 36.000 0.00 0.00 0.00 3.91
3478 3615 5.849858 TCGAATTAACATCAACGTGTAAGC 58.150 37.500 0.00 0.00 0.00 3.09
3479 3616 8.702408 TTTTCGAATTAACATCAACGTGTAAG 57.298 30.769 0.00 0.00 0.00 2.34
3480 3617 9.666626 ATTTTTCGAATTAACATCAACGTGTAA 57.333 25.926 0.00 0.00 0.00 2.41
3482 3619 9.666626 TTATTTTTCGAATTAACATCAACGTGT 57.333 25.926 0.00 0.00 0.00 4.49
3498 3635 9.015577 GCATATTGGAAACGATTTATTTTTCGA 57.984 29.630 0.00 0.00 38.67 3.71
3499 3636 8.802856 TGCATATTGGAAACGATTTATTTTTCG 58.197 29.630 0.00 0.00 41.04 3.46
3501 3638 9.868277 TCTGCATATTGGAAACGATTTATTTTT 57.132 25.926 0.00 0.00 35.53 1.94
3502 3639 9.520204 CTCTGCATATTGGAAACGATTTATTTT 57.480 29.630 0.00 0.00 35.53 1.82
3503 3640 8.137437 CCTCTGCATATTGGAAACGATTTATTT 58.863 33.333 0.00 0.00 35.53 1.40
3504 3641 7.502226 TCCTCTGCATATTGGAAACGATTTATT 59.498 33.333 0.00 0.00 35.53 1.40
3505 3642 6.998074 TCCTCTGCATATTGGAAACGATTTAT 59.002 34.615 0.00 0.00 35.53 1.40
3506 3643 6.353323 TCCTCTGCATATTGGAAACGATTTA 58.647 36.000 0.00 0.00 35.53 1.40
3507 3644 5.192927 TCCTCTGCATATTGGAAACGATTT 58.807 37.500 0.00 0.00 35.53 2.17
3508 3645 4.780815 TCCTCTGCATATTGGAAACGATT 58.219 39.130 0.00 0.00 35.53 3.34
3509 3646 4.141620 ACTCCTCTGCATATTGGAAACGAT 60.142 41.667 0.00 0.00 38.31 3.73
3510 3647 3.197766 ACTCCTCTGCATATTGGAAACGA 59.802 43.478 0.00 0.00 0.00 3.85
3511 3648 3.535561 ACTCCTCTGCATATTGGAAACG 58.464 45.455 0.00 0.00 0.00 3.60
3512 3649 5.428253 TGTACTCCTCTGCATATTGGAAAC 58.572 41.667 0.00 0.00 0.00 2.78
3513 3650 5.692115 TGTACTCCTCTGCATATTGGAAA 57.308 39.130 0.00 0.00 0.00 3.13
3514 3651 5.604231 AGATGTACTCCTCTGCATATTGGAA 59.396 40.000 0.00 0.00 0.00 3.53
3515 3652 5.150715 AGATGTACTCCTCTGCATATTGGA 58.849 41.667 0.00 0.00 0.00 3.53
3516 3653 5.477510 GAGATGTACTCCTCTGCATATTGG 58.522 45.833 0.00 0.00 39.53 3.16
3517 3654 5.159925 CGAGATGTACTCCTCTGCATATTG 58.840 45.833 11.42 0.00 42.18 1.90
3518 3655 4.219507 CCGAGATGTACTCCTCTGCATATT 59.780 45.833 11.42 0.00 42.18 1.28
3519 3656 3.761218 CCGAGATGTACTCCTCTGCATAT 59.239 47.826 11.42 0.00 42.18 1.78
3520 3657 3.149981 CCGAGATGTACTCCTCTGCATA 58.850 50.000 11.42 0.00 42.18 3.14
3521 3658 1.959985 CCGAGATGTACTCCTCTGCAT 59.040 52.381 11.42 0.00 42.18 3.96
3522 3659 1.393603 CCGAGATGTACTCCTCTGCA 58.606 55.000 11.42 0.00 42.18 4.41
3523 3660 0.671251 CCCGAGATGTACTCCTCTGC 59.329 60.000 11.42 0.00 42.18 4.26
3524 3661 1.950909 GACCCGAGATGTACTCCTCTG 59.049 57.143 11.42 6.55 42.18 3.35
3525 3662 1.133730 GGACCCGAGATGTACTCCTCT 60.134 57.143 11.42 3.94 42.18 3.69
3526 3663 1.320507 GGACCCGAGATGTACTCCTC 58.679 60.000 0.00 0.00 42.18 3.71
3527 3664 3.516911 GGACCCGAGATGTACTCCT 57.483 57.895 0.00 0.00 42.18 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.