Multiple sequence alignment - TraesCS3D01G308700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G308700 chr3D 100.000 4950 0 0 1 4950 422646345 422651294 0.000000e+00 9142.0
1 TraesCS3D01G308700 chr3D 98.770 244 3 0 4642 4885 422656500 422656743 7.610000e-118 435.0
2 TraesCS3D01G308700 chr3D 96.774 62 1 1 1995 2055 122572234 122572173 8.770000e-18 102.0
3 TraesCS3D01G308700 chr3A 93.871 2219 104 14 2051 4247 566326931 566324723 0.000000e+00 3315.0
4 TraesCS3D01G308700 chr3A 89.706 1224 75 25 589 1785 566328283 566327084 0.000000e+00 1515.0
5 TraesCS3D01G308700 chr3A 90.328 579 37 6 4317 4885 566324720 566324151 0.000000e+00 741.0
6 TraesCS3D01G308700 chr3A 86.928 153 8 1 1802 1954 566327096 566326956 1.430000e-35 161.0
7 TraesCS3D01G308700 chr3A 93.151 73 3 2 1983 2053 638911001 638911073 6.780000e-19 106.0
8 TraesCS3D01G308700 chr3B 92.693 2258 85 33 2052 4284 550730812 550733014 0.000000e+00 3182.0
9 TraesCS3D01G308700 chr3B 97.506 401 8 2 843 1241 550729657 550730057 0.000000e+00 684.0
10 TraesCS3D01G308700 chr3B 89.358 545 41 8 1242 1779 550730103 550730637 0.000000e+00 669.0
11 TraesCS3D01G308700 chr3B 87.247 494 28 15 4280 4773 550772340 550772798 9.430000e-147 531.0
12 TraesCS3D01G308700 chr3B 90.986 355 27 3 1 355 550721782 550722131 1.610000e-129 473.0
13 TraesCS3D01G308700 chr3B 80.537 447 41 22 409 846 550724938 550725347 8.050000e-78 302.0
14 TraesCS3D01G308700 chr3B 94.771 153 8 0 1802 1954 550730631 550730783 6.400000e-59 239.0
15 TraesCS3D01G308700 chr3B 89.474 133 3 4 4764 4885 550800462 550800594 1.840000e-34 158.0
16 TraesCS3D01G308700 chr7A 88.079 453 46 6 1253 1699 95652260 95652710 9.430000e-147 531.0
17 TraesCS3D01G308700 chr7A 92.568 148 11 0 1094 1241 95652068 95652215 3.880000e-51 213.0
18 TraesCS3D01G308700 chr7A 86.624 157 18 3 944 1098 95644837 95644992 2.370000e-38 171.0
19 TraesCS3D01G308700 chr7A 91.667 72 3 2 1992 2060 511498675 511498746 4.080000e-16 97.1
20 TraesCS3D01G308700 chr1A 74.438 356 79 10 3433 3787 516786899 516786555 5.170000e-30 143.0
21 TraesCS3D01G308700 chr1A 74.074 351 68 19 2978 3317 516787546 516787208 6.730000e-24 122.0
22 TraesCS3D01G308700 chr1A 71.264 348 84 11 2978 3318 516850148 516849810 1.910000e-09 75.0
23 TraesCS3D01G308700 chr1A 90.909 55 4 1 4257 4310 578471216 578471162 6.870000e-09 73.1
24 TraesCS3D01G308700 chr1B 84.211 133 20 1 3433 3565 568569130 568568999 1.450000e-25 128.0
25 TraesCS3D01G308700 chr1B 73.864 352 70 19 2978 3317 568569750 568569409 2.420000e-23 121.0
26 TraesCS3D01G308700 chr1B 79.817 109 22 0 2978 3086 568644106 568643998 4.110000e-11 80.5
27 TraesCS3D01G308700 chr5D 100.000 67 0 0 4884 4950 561168262 561168196 1.870000e-24 124.0
28 TraesCS3D01G308700 chr5D 100.000 66 0 0 4885 4950 561056936 561056871 6.730000e-24 122.0
29 TraesCS3D01G308700 chr2A 98.551 69 1 0 4882 4950 385406623 385406691 6.730000e-24 122.0
30 TraesCS3D01G308700 chr7D 98.529 68 1 0 4883 4950 376035223 376035156 2.420000e-23 121.0
31 TraesCS3D01G308700 chr7D 94.667 75 3 1 4876 4950 46113244 46113317 1.130000e-21 115.0
32 TraesCS3D01G308700 chr6D 98.529 68 1 0 4882 4949 325641788 325641721 2.420000e-23 121.0
33 TraesCS3D01G308700 chr6D 92.537 67 2 1 1993 2056 62122801 62122735 5.280000e-15 93.5
34 TraesCS3D01G308700 chr2B 92.941 85 3 3 4867 4950 140340663 140340581 2.420000e-23 121.0
35 TraesCS3D01G308700 chr2B 98.529 68 1 0 4883 4950 419209356 419209423 2.420000e-23 121.0
36 TraesCS3D01G308700 chr4D 97.143 70 2 0 4881 4950 74191787 74191856 8.700000e-23 119.0
37 TraesCS3D01G308700 chr1D 82.707 133 22 1 3433 3565 420554311 420554180 3.130000e-22 117.0
38 TraesCS3D01G308700 chr1D 73.371 353 71 19 2978 3317 420555042 420554700 5.240000e-20 110.0
39 TraesCS3D01G308700 chr1D 71.347 349 83 13 2978 3318 420565690 420565351 1.910000e-09 75.0
40 TraesCS3D01G308700 chr6B 91.566 83 5 2 1979 2059 14339429 14339511 4.050000e-21 113.0
41 TraesCS3D01G308700 chr4A 95.312 64 2 1 1994 2056 632915970 632915907 3.150000e-17 100.0
42 TraesCS3D01G308700 chr4B 92.647 68 2 3 1989 2053 43064306 43064239 1.470000e-15 95.3
43 TraesCS3D01G308700 chr4B 93.548 62 2 1 1995 2054 553950980 553950919 1.900000e-14 91.6
44 TraesCS3D01G308700 chr6A 91.304 69 4 1 1989 2055 9347257 9347325 5.280000e-15 93.5
45 TraesCS3D01G308700 chr7B 84.375 96 12 2 4218 4310 406892624 406892719 1.900000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G308700 chr3D 422646345 422651294 4949 False 9142.0 9142 100.00000 1 4950 1 chr3D.!!$F1 4949
1 TraesCS3D01G308700 chr3A 566324151 566328283 4132 True 1433.0 3315 90.20825 589 4885 4 chr3A.!!$R1 4296
2 TraesCS3D01G308700 chr3B 550729657 550733014 3357 False 1193.5 3182 93.58200 843 4284 4 chr3B.!!$F4 3441
3 TraesCS3D01G308700 chr3B 550721782 550725347 3565 False 387.5 473 85.76150 1 846 2 chr3B.!!$F3 845
4 TraesCS3D01G308700 chr7A 95652068 95652710 642 False 372.0 531 90.32350 1094 1699 2 chr7A.!!$F3 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.179045 CTCCAACCTCCATTAGCGGG 60.179 60.000 0.00 0.0 0.00 6.13 F
441 3195 0.542702 AAATCTGCCACACAAGGGGG 60.543 55.000 0.00 0.0 0.00 5.40 F
714 3482 0.618981 ACCGGACCAATCTTTCCCTC 59.381 55.000 9.46 0.0 0.00 4.30 F
726 3494 1.137872 CTTTCCCTCCGGATCAGTCAG 59.862 57.143 3.57 0.0 38.24 3.51 F
1794 4662 0.039035 AAGCCATTTAGTTCCCCGCA 59.961 50.000 0.00 0.0 0.00 5.69 F
1795 4663 0.039035 AGCCATTTAGTTCCCCGCAA 59.961 50.000 0.00 0.0 0.00 4.85 F
2010 4878 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 F
2011 4879 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 4643 0.039035 TGCGGGGAACTAAATGGCTT 59.961 50.000 0.00 0.0 0.00 4.35 R
1776 4644 0.039035 TTGCGGGGAACTAAATGGCT 59.961 50.000 0.00 0.0 0.00 4.75 R
1777 4645 0.892063 TTTGCGGGGAACTAAATGGC 59.108 50.000 0.00 0.0 0.00 4.40 R
2034 4902 0.896226 GTACTCCCTCCGTCAAAGCT 59.104 55.000 0.00 0.0 0.00 3.74 R
2654 5525 1.171308 CAGGTCTGGTTTCTGCATGG 58.829 55.000 0.00 0.0 0.00 3.66 R
2781 5652 1.377202 GCCACCTCCTTTCGCATGA 60.377 57.895 0.00 0.0 0.00 3.07 R
3838 6728 0.467804 GAGGGAGGGACTTGCTGATC 59.532 60.000 0.00 0.0 41.55 2.92 R
4024 6919 5.882557 ACAAACCAATTTACAATTTGGCACA 59.117 32.000 13.11 0.0 45.13 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.150536 GGTGTTTGGGTGGAGCAGA 59.849 57.895 0.00 0.00 0.00 4.26
29 30 0.251341 GGTGTTTGGGTGGAGCAGAT 60.251 55.000 0.00 0.00 0.00 2.90
66 67 7.150783 ACATTGTTTCTGCTCCTTTTCTATC 57.849 36.000 0.00 0.00 0.00 2.08
79 80 5.120208 TCCTTTTCTATCGCTTCTTTGTTCG 59.880 40.000 0.00 0.00 0.00 3.95
119 120 1.680735 GACATGTGCACCTGGTTGAAA 59.319 47.619 23.51 0.00 0.00 2.69
141 142 0.737019 GCGTCAAATACCCGTCCGAA 60.737 55.000 0.00 0.00 0.00 4.30
148 149 1.108132 ATACCCGTCCGAAGCCTCTC 61.108 60.000 0.00 0.00 0.00 3.20
159 160 1.283321 GAAGCCTCTCCAACCTCCATT 59.717 52.381 0.00 0.00 0.00 3.16
165 166 0.179045 CTCCAACCTCCATTAGCGGG 60.179 60.000 0.00 0.00 0.00 6.13
170 171 1.524621 CCTCCATTAGCGGGCACTG 60.525 63.158 0.00 0.00 38.10 3.66
179 180 1.166531 AGCGGGCACTGTGAAAGTTC 61.167 55.000 12.86 0.00 36.83 3.01
220 221 5.252547 TGAACTAGTTCAGCAAATATGCCA 58.747 37.500 30.07 7.37 44.13 4.92
221 222 5.123820 TGAACTAGTTCAGCAAATATGCCAC 59.876 40.000 30.07 3.83 44.13 5.01
246 247 3.007290 GCTTTTGCCCTCTTTCTCCAAAT 59.993 43.478 0.00 0.00 40.15 2.32
259 260 8.833231 TCTTTCTCCAAATAACAACTGAGTAG 57.167 34.615 0.00 0.00 0.00 2.57
261 262 6.109156 TCTCCAAATAACAACTGAGTAGCA 57.891 37.500 0.00 0.00 0.00 3.49
262 263 6.530120 TCTCCAAATAACAACTGAGTAGCAA 58.470 36.000 0.00 0.00 0.00 3.91
263 264 6.426937 TCTCCAAATAACAACTGAGTAGCAAC 59.573 38.462 0.00 0.00 0.00 4.17
264 265 6.058833 TCCAAATAACAACTGAGTAGCAACA 58.941 36.000 0.00 0.00 0.00 3.33
272 273 5.701290 ACAACTGAGTAGCAACATTTACCTC 59.299 40.000 0.00 0.00 0.00 3.85
279 280 1.463444 GCAACATTTACCTCGCTCGTT 59.537 47.619 0.00 0.00 0.00 3.85
310 311 5.332106 TCAGAGACCTAGGATCTTAGCAT 57.668 43.478 17.98 0.00 0.00 3.79
311 312 5.710646 TCAGAGACCTAGGATCTTAGCATT 58.289 41.667 17.98 0.00 0.00 3.56
333 334 5.999205 TGAGGTGCCACATTTCAAATATT 57.001 34.783 0.00 0.00 0.00 1.28
431 3185 5.509498 AGCATTAACCTAGAAAATCTGCCA 58.491 37.500 0.00 0.00 0.00 4.92
436 3190 4.098914 ACCTAGAAAATCTGCCACACAA 57.901 40.909 0.00 0.00 0.00 3.33
441 3195 0.542702 AAATCTGCCACACAAGGGGG 60.543 55.000 0.00 0.00 0.00 5.40
461 3215 1.703411 CTCCCCCACACACAACAAAT 58.297 50.000 0.00 0.00 0.00 2.32
495 3249 9.270576 CTATAATAAGATGCAACAAATCATCGC 57.729 33.333 0.00 0.00 42.76 4.58
498 3252 3.011818 AGATGCAACAAATCATCGCTCA 58.988 40.909 0.00 0.00 42.76 4.26
505 3259 3.504863 ACAAATCATCGCTCATTGCAAC 58.495 40.909 0.00 0.00 43.06 4.17
543 3302 1.069500 GTCACAACACCCGCAACATAC 60.069 52.381 0.00 0.00 0.00 2.39
574 3333 9.450807 AACTAATATGCATGCGAAAGATAAAAC 57.549 29.630 14.09 0.00 0.00 2.43
579 3338 4.095782 TGCATGCGAAAGATAAAACCCTAC 59.904 41.667 14.09 0.00 0.00 3.18
584 3343 4.510711 GCGAAAGATAAAACCCTACCTAGC 59.489 45.833 0.00 0.00 0.00 3.42
587 3346 5.632034 AAGATAAAACCCTACCTAGCCTG 57.368 43.478 0.00 0.00 0.00 4.85
658 3426 3.013921 GCCGAAACACCATCCAGAAATA 58.986 45.455 0.00 0.00 0.00 1.40
669 3437 7.042051 ACACCATCCAGAAATATCGATTTAACG 60.042 37.037 1.71 0.00 35.33 3.18
714 3482 0.618981 ACCGGACCAATCTTTCCCTC 59.381 55.000 9.46 0.00 0.00 4.30
726 3494 1.137872 CTTTCCCTCCGGATCAGTCAG 59.862 57.143 3.57 0.00 38.24 3.51
822 3621 3.361977 CGGGAAGGCCAAACCGTG 61.362 66.667 19.95 6.60 46.52 4.94
887 3693 3.966543 CGAAACCCACCCCCAGCT 61.967 66.667 0.00 0.00 0.00 4.24
972 3778 1.832167 GCCGCAGAGAGGAGAGGAT 60.832 63.158 0.00 0.00 0.00 3.24
1249 4100 1.757699 AGGTAATGTCCCTTCTCTCGC 59.242 52.381 0.00 0.00 0.00 5.03
1317 4169 1.275657 CTTCCGTGTGTGTCGTTGC 59.724 57.895 0.00 0.00 0.00 4.17
1319 4171 1.425267 TTCCGTGTGTGTCGTTGCTG 61.425 55.000 0.00 0.00 0.00 4.41
1736 4604 4.985044 TTTTACTTTGTCGAGCTACTGC 57.015 40.909 0.00 0.00 40.05 4.40
1740 4608 1.662629 CTTTGTCGAGCTACTGCCATG 59.337 52.381 0.00 0.00 40.80 3.66
1759 4627 3.815856 TGTGATTCTCTCCAGCTGATC 57.184 47.619 17.39 9.58 0.00 2.92
1763 4631 5.423290 TGTGATTCTCTCCAGCTGATCTTTA 59.577 40.000 17.39 0.00 0.00 1.85
1764 4632 5.984926 GTGATTCTCTCCAGCTGATCTTTAG 59.015 44.000 17.39 3.82 0.00 1.85
1767 4635 3.703556 TCTCTCCAGCTGATCTTTAGGTG 59.296 47.826 17.39 4.23 41.89 4.00
1768 4636 3.703556 CTCTCCAGCTGATCTTTAGGTGA 59.296 47.826 17.39 1.05 44.22 4.02
1769 4637 4.293494 TCTCCAGCTGATCTTTAGGTGAT 58.707 43.478 17.39 0.00 44.22 3.06
1771 4639 5.028549 TCCAGCTGATCTTTAGGTGATTC 57.971 43.478 17.39 0.00 44.22 2.52
1772 4640 4.471025 TCCAGCTGATCTTTAGGTGATTCA 59.529 41.667 17.39 0.00 44.22 2.57
1773 4641 5.045651 TCCAGCTGATCTTTAGGTGATTCAA 60.046 40.000 17.39 0.00 44.22 2.69
1774 4642 5.296283 CCAGCTGATCTTTAGGTGATTCAAG 59.704 44.000 17.39 0.00 44.22 3.02
1775 4643 6.111382 CAGCTGATCTTTAGGTGATTCAAGA 58.889 40.000 8.42 0.00 44.22 3.02
1776 4644 6.596888 CAGCTGATCTTTAGGTGATTCAAGAA 59.403 38.462 8.42 0.00 44.22 2.52
1777 4645 6.822676 AGCTGATCTTTAGGTGATTCAAGAAG 59.177 38.462 0.00 0.00 0.00 2.85
1778 4646 6.458070 GCTGATCTTTAGGTGATTCAAGAAGC 60.458 42.308 0.00 0.00 0.00 3.86
1779 4647 5.882557 TGATCTTTAGGTGATTCAAGAAGCC 59.117 40.000 0.00 0.00 0.00 4.35
1780 4648 5.241403 TCTTTAGGTGATTCAAGAAGCCA 57.759 39.130 0.00 0.00 0.00 4.75
1781 4649 5.819991 TCTTTAGGTGATTCAAGAAGCCAT 58.180 37.500 0.00 0.00 0.00 4.40
1782 4650 6.248433 TCTTTAGGTGATTCAAGAAGCCATT 58.752 36.000 0.00 0.00 0.00 3.16
1783 4651 6.721208 TCTTTAGGTGATTCAAGAAGCCATTT 59.279 34.615 0.00 0.00 0.00 2.32
1784 4652 7.888021 TCTTTAGGTGATTCAAGAAGCCATTTA 59.112 33.333 0.00 0.00 0.00 1.40
1785 4653 7.630242 TTAGGTGATTCAAGAAGCCATTTAG 57.370 36.000 0.00 0.00 0.00 1.85
1786 4654 5.574188 AGGTGATTCAAGAAGCCATTTAGT 58.426 37.500 0.00 0.00 0.00 2.24
1787 4655 6.012745 AGGTGATTCAAGAAGCCATTTAGTT 58.987 36.000 0.00 0.00 0.00 2.24
1788 4656 6.151817 AGGTGATTCAAGAAGCCATTTAGTTC 59.848 38.462 0.00 0.00 0.00 3.01
1789 4657 6.325596 GTGATTCAAGAAGCCATTTAGTTCC 58.674 40.000 0.00 0.00 0.00 3.62
1790 4658 5.418840 TGATTCAAGAAGCCATTTAGTTCCC 59.581 40.000 0.00 0.00 0.00 3.97
1791 4659 3.697166 TCAAGAAGCCATTTAGTTCCCC 58.303 45.455 0.00 0.00 0.00 4.81
1792 4660 2.420058 AGAAGCCATTTAGTTCCCCG 57.580 50.000 0.00 0.00 0.00 5.73
1793 4661 0.738975 GAAGCCATTTAGTTCCCCGC 59.261 55.000 0.00 0.00 0.00 6.13
1794 4662 0.039035 AAGCCATTTAGTTCCCCGCA 59.961 50.000 0.00 0.00 0.00 5.69
1795 4663 0.039035 AGCCATTTAGTTCCCCGCAA 59.961 50.000 0.00 0.00 0.00 4.85
1796 4664 0.892063 GCCATTTAGTTCCCCGCAAA 59.108 50.000 0.00 0.00 0.00 3.68
1797 4665 1.273886 GCCATTTAGTTCCCCGCAAAA 59.726 47.619 0.00 0.00 0.00 2.44
1798 4666 2.289133 GCCATTTAGTTCCCCGCAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
1934 4802 5.359194 TTTCTCATCTTGGATGGGTAGTC 57.641 43.478 7.20 0.00 0.00 2.59
1944 4812 5.546621 TGGATGGGTAGTCTGTAATTAGC 57.453 43.478 0.00 0.00 0.00 3.09
1954 4822 6.893958 AGTCTGTAATTAGCGAGACATTTG 57.106 37.500 16.20 0.00 37.83 2.32
1955 4823 6.631016 AGTCTGTAATTAGCGAGACATTTGA 58.369 36.000 16.20 0.00 37.83 2.69
1956 4824 7.097192 AGTCTGTAATTAGCGAGACATTTGAA 58.903 34.615 16.20 0.00 37.83 2.69
1957 4825 7.276658 AGTCTGTAATTAGCGAGACATTTGAAG 59.723 37.037 16.20 0.00 37.83 3.02
1959 4827 5.584649 TGTAATTAGCGAGACATTTGAAGGG 59.415 40.000 0.00 0.00 0.00 3.95
1960 4828 2.024176 TAGCGAGACATTTGAAGGGC 57.976 50.000 0.00 0.00 0.00 5.19
1961 4829 0.326264 AGCGAGACATTTGAAGGGCT 59.674 50.000 0.00 0.00 0.00 5.19
1962 4830 1.555075 AGCGAGACATTTGAAGGGCTA 59.445 47.619 0.00 0.00 0.00 3.93
1963 4831 1.936547 GCGAGACATTTGAAGGGCTAG 59.063 52.381 0.00 0.00 0.00 3.42
1964 4832 2.418746 GCGAGACATTTGAAGGGCTAGA 60.419 50.000 0.00 0.00 0.00 2.43
1965 4833 3.742640 GCGAGACATTTGAAGGGCTAGAT 60.743 47.826 0.00 0.00 0.00 1.98
1966 4834 4.446371 CGAGACATTTGAAGGGCTAGATT 58.554 43.478 0.00 0.00 0.00 2.40
1967 4835 5.601662 CGAGACATTTGAAGGGCTAGATTA 58.398 41.667 0.00 0.00 0.00 1.75
1968 4836 6.049149 CGAGACATTTGAAGGGCTAGATTAA 58.951 40.000 0.00 0.00 0.00 1.40
1969 4837 6.538742 CGAGACATTTGAAGGGCTAGATTAAA 59.461 38.462 0.00 0.00 0.00 1.52
1970 4838 7.254590 CGAGACATTTGAAGGGCTAGATTAAAG 60.255 40.741 0.00 0.00 0.00 1.85
1971 4839 7.406104 AGACATTTGAAGGGCTAGATTAAAGT 58.594 34.615 0.00 0.00 0.00 2.66
1972 4840 7.337942 AGACATTTGAAGGGCTAGATTAAAGTG 59.662 37.037 0.00 0.00 0.00 3.16
1973 4841 7.175104 ACATTTGAAGGGCTAGATTAAAGTGA 58.825 34.615 0.00 0.00 0.00 3.41
1994 4862 9.570468 AAGTGATAGATTGCATTCTTATCATGT 57.430 29.630 15.78 10.86 0.00 3.21
1999 4867 7.976135 AGATTGCATTCTTATCATGTACTCC 57.024 36.000 5.28 0.00 0.00 3.85
2000 4868 6.939163 AGATTGCATTCTTATCATGTACTCCC 59.061 38.462 5.28 0.00 0.00 4.30
2001 4869 5.894298 TGCATTCTTATCATGTACTCCCT 57.106 39.130 0.00 0.00 0.00 4.20
2002 4870 5.858381 TGCATTCTTATCATGTACTCCCTC 58.142 41.667 0.00 0.00 0.00 4.30
2003 4871 5.221722 TGCATTCTTATCATGTACTCCCTCC 60.222 44.000 0.00 0.00 0.00 4.30
2004 4872 5.473931 CATTCTTATCATGTACTCCCTCCG 58.526 45.833 0.00 0.00 0.00 4.63
2005 4873 4.180377 TCTTATCATGTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
2006 4874 4.142790 TCTTATCATGTACTCCCTCCGTC 58.857 47.826 0.00 0.00 0.00 4.79
2007 4875 1.705873 ATCATGTACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
2008 4876 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2009 4877 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2010 4878 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2011 4879 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2012 4880 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2013 4881 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2014 4882 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2015 4883 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2016 4884 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2017 4885 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2018 4886 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2019 4887 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2020 4888 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2021 4889 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2022 4890 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2023 4891 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2024 4892 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2025 4893 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2026 4894 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2027 4895 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2028 4896 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2029 4897 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2030 4898 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2031 4899 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2032 4900 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2033 4901 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2036 4904 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2037 4905 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2038 4906 6.163135 AGTGACTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
2039 4907 6.583562 AGTGACTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
2040 4908 6.480320 AGTGACTCAACTTTGTACTAGCTTTG 59.520 38.462 0.00 0.00 0.00 2.77
2041 4909 6.479001 GTGACTCAACTTTGTACTAGCTTTGA 59.521 38.462 0.00 0.00 0.00 2.69
2042 4910 6.479001 TGACTCAACTTTGTACTAGCTTTGAC 59.521 38.462 0.00 0.00 0.00 3.18
2043 4911 5.462398 ACTCAACTTTGTACTAGCTTTGACG 59.538 40.000 0.00 0.00 0.00 4.35
2044 4912 4.748102 TCAACTTTGTACTAGCTTTGACGG 59.252 41.667 0.00 0.00 0.00 4.79
2045 4913 4.595762 ACTTTGTACTAGCTTTGACGGA 57.404 40.909 0.00 0.00 0.00 4.69
2046 4914 4.557205 ACTTTGTACTAGCTTTGACGGAG 58.443 43.478 0.00 0.00 0.00 4.63
2047 4915 3.587797 TTGTACTAGCTTTGACGGAGG 57.412 47.619 0.00 0.00 0.00 4.30
2048 4916 1.822990 TGTACTAGCTTTGACGGAGGG 59.177 52.381 0.00 0.00 0.00 4.30
2049 4917 2.097825 GTACTAGCTTTGACGGAGGGA 58.902 52.381 0.00 0.00 0.00 4.20
2065 4933 3.454812 GGAGGGAGTACTATTTGGCTTCA 59.545 47.826 0.00 0.00 0.00 3.02
2077 4945 1.378762 GGCTTCAGTGTGGGGCTTA 59.621 57.895 0.00 0.00 0.00 3.09
2087 4955 3.824443 AGTGTGGGGCTTATGTTGTTTAC 59.176 43.478 0.00 0.00 0.00 2.01
2088 4956 3.570550 GTGTGGGGCTTATGTTGTTTACA 59.429 43.478 0.00 0.00 41.97 2.41
2106 4974 1.301244 AGTTGACTGGCTCACTGCG 60.301 57.895 0.00 0.00 44.05 5.18
2108 4976 2.807107 TTGACTGGCTCACTGCGGT 61.807 57.895 0.00 0.00 44.05 5.68
2110 4978 1.292223 GACTGGCTCACTGCGGTTA 59.708 57.895 0.00 0.00 44.05 2.85
2127 4998 5.221441 TGCGGTTATATATGTCTTCTGCACT 60.221 40.000 0.00 0.00 32.08 4.40
2130 5001 7.384115 GCGGTTATATATGTCTTCTGCACTTTA 59.616 37.037 0.00 0.00 0.00 1.85
2132 5003 8.713271 GGTTATATATGTCTTCTGCACTTTAGC 58.287 37.037 0.00 0.00 0.00 3.09
2165 5036 8.752005 ATTACAATATACTGTTCACAAGGCAT 57.248 30.769 0.00 0.00 0.00 4.40
2189 5060 0.961019 TTGTTCATGCAGGTTCTGGC 59.039 50.000 0.00 0.00 31.21 4.85
2198 5069 2.230660 GCAGGTTCTGGCAAAACTACT 58.769 47.619 3.38 0.00 31.21 2.57
2252 5123 7.631717 AAAGATAGGATTTAAACCAGCACTC 57.368 36.000 8.80 0.00 0.00 3.51
2431 5302 2.236893 TCACTGCAGCTACATGGAATCA 59.763 45.455 15.27 0.00 0.00 2.57
2458 5329 4.039124 CCAGTAAAAATTGCTGTTGAGGGT 59.961 41.667 7.29 0.00 41.13 4.34
2583 5454 3.247006 AGCAACGGTAATACACTCAGG 57.753 47.619 0.00 0.00 0.00 3.86
2616 5487 8.822805 ACTTTCAGTTATAACCTGATTACCTGA 58.177 33.333 12.05 3.50 0.00 3.86
2618 5489 9.444600 TTTCAGTTATAACCTGATTACCTGAAC 57.555 33.333 12.05 0.00 36.28 3.18
2619 5490 7.562135 TCAGTTATAACCTGATTACCTGAACC 58.438 38.462 12.05 0.00 29.22 3.62
2620 5491 7.181305 TCAGTTATAACCTGATTACCTGAACCA 59.819 37.037 12.05 0.00 29.22 3.67
2621 5492 7.827236 CAGTTATAACCTGATTACCTGAACCAA 59.173 37.037 12.05 0.00 0.00 3.67
2622 5493 8.387813 AGTTATAACCTGATTACCTGAACCAAA 58.612 33.333 12.05 0.00 0.00 3.28
2623 5494 9.185680 GTTATAACCTGATTACCTGAACCAAAT 57.814 33.333 4.11 0.00 0.00 2.32
2624 5495 5.982890 AACCTGATTACCTGAACCAAATG 57.017 39.130 0.00 0.00 0.00 2.32
2654 5525 2.604914 CTCACCTGCATTGTGACGATAC 59.395 50.000 13.51 0.00 37.80 2.24
2781 5652 7.040473 TGTAATTGTTACAAAAATGGACGGT 57.960 32.000 0.66 0.00 42.75 4.83
3118 6006 0.599558 TGTGGCGTCTACCTGTGTAC 59.400 55.000 0.00 0.00 0.00 2.90
3131 6019 2.832129 CCTGTGTACTCCCTTTAGCTGA 59.168 50.000 0.00 0.00 0.00 4.26
3565 6453 1.204704 CCATGACAGACGCAGGTAAGA 59.795 52.381 0.00 0.00 0.00 2.10
3593 6481 3.027170 GAGTCAACCCATGCGTGCG 62.027 63.158 0.00 0.00 0.00 5.34
3596 6484 2.030401 TCAACCCATGCGTGCGTAC 61.030 57.895 0.00 0.00 0.00 3.67
3601 6491 0.581529 CCCATGCGTGCGTACATTAG 59.418 55.000 4.09 0.00 0.00 1.73
3605 6495 3.307512 CCATGCGTGCGTACATTAGTAAA 59.692 43.478 4.09 0.00 30.67 2.01
3619 6509 9.091784 GTACATTAGTAAAACTAACACCCTAGC 57.908 37.037 1.79 0.00 42.78 3.42
3629 6519 2.154567 ACACCCTAGCGGTCTATTGA 57.845 50.000 0.00 0.00 43.58 2.57
3691 6581 3.273434 TCCAAAGCTGATGAAGGAATCG 58.727 45.455 1.45 0.00 0.00 3.34
3697 6587 2.064762 CTGATGAAGGAATCGCGGATC 58.935 52.381 6.13 4.72 0.00 3.36
3772 6662 2.415491 GGAAGAATACAAACGGCTTGCC 60.415 50.000 0.75 0.75 38.75 4.52
3802 6692 4.142491 TGGAGCAATGTAATAAAACGGCTG 60.142 41.667 0.00 0.00 0.00 4.85
3808 6698 6.616947 CAATGTAATAAAACGGCTGAGGAAA 58.383 36.000 0.00 0.00 0.00 3.13
3838 6728 1.135859 GGAAACACGAATGCTCAGCAG 60.136 52.381 5.13 0.00 43.65 4.24
4024 6919 8.037758 CAGAGTTTTGAACTAGAGGATACACAT 58.962 37.037 0.00 0.00 43.03 3.21
4071 6966 1.219935 GGTAACACTGTAGCCCCCG 59.780 63.158 0.00 0.00 0.00 5.73
4080 6975 0.912487 TGTAGCCCCCGATGGTTCTT 60.912 55.000 0.00 0.00 0.00 2.52
4091 6986 6.430000 CCCCCGATGGTTCTTATATAAAGTTG 59.570 42.308 0.00 0.00 0.00 3.16
4193 7088 8.297426 GCTAAACTTAAAGCACTTGAATTACCT 58.703 33.333 0.00 0.00 38.63 3.08
4196 7091 8.919777 AACTTAAAGCACTTGAATTACCTAGT 57.080 30.769 0.00 0.00 0.00 2.57
4200 7095 9.959749 TTAAAGCACTTGAATTACCTAGTTTTG 57.040 29.630 0.00 0.00 0.00 2.44
4279 7176 6.267471 AGAAATAACTGCACAGAAAAATGGGA 59.733 34.615 4.31 0.00 0.00 4.37
4280 7177 6.610075 AATAACTGCACAGAAAAATGGGAT 57.390 33.333 4.31 0.00 0.00 3.85
4282 7179 5.391312 AACTGCACAGAAAAATGGGATAC 57.609 39.130 4.31 0.00 0.00 2.24
4283 7180 4.666512 ACTGCACAGAAAAATGGGATACT 58.333 39.130 4.31 0.00 0.00 2.12
4285 7182 4.661222 TGCACAGAAAAATGGGATACTCA 58.339 39.130 0.00 0.00 0.00 3.41
4286 7183 4.458989 TGCACAGAAAAATGGGATACTCAC 59.541 41.667 0.00 0.00 0.00 3.51
4287 7184 4.458989 GCACAGAAAAATGGGATACTCACA 59.541 41.667 0.00 0.00 32.34 3.58
4288 7185 5.126061 GCACAGAAAAATGGGATACTCACAT 59.874 40.000 0.00 0.00 43.53 3.21
4290 7187 7.253422 CACAGAAAAATGGGATACTCACATTC 58.747 38.462 5.16 0.00 46.81 2.67
4291 7188 6.947733 ACAGAAAAATGGGATACTCACATTCA 59.052 34.615 5.16 0.00 46.81 2.57
4292 7189 7.451255 ACAGAAAAATGGGATACTCACATTCAA 59.549 33.333 5.16 0.00 46.81 2.69
4293 7190 8.306038 CAGAAAAATGGGATACTCACATTCAAA 58.694 33.333 5.16 0.00 46.81 2.69
4294 7191 8.306761 AGAAAAATGGGATACTCACATTCAAAC 58.693 33.333 5.16 0.00 46.81 2.93
4295 7192 7.781324 AAAATGGGATACTCACATTCAAACT 57.219 32.000 5.16 0.00 46.81 2.66
4296 7193 7.781324 AAATGGGATACTCACATTCAAACTT 57.219 32.000 5.16 0.00 46.81 2.66
4297 7194 7.396540 AATGGGATACTCACATTCAAACTTC 57.603 36.000 0.00 0.00 46.81 3.01
4298 7195 6.126863 TGGGATACTCACATTCAAACTTCT 57.873 37.500 0.00 0.00 0.00 2.85
4299 7196 5.939883 TGGGATACTCACATTCAAACTTCTG 59.060 40.000 0.00 0.00 0.00 3.02
4300 7197 5.163713 GGGATACTCACATTCAAACTTCTGC 60.164 44.000 0.00 0.00 0.00 4.26
4301 7198 5.412594 GGATACTCACATTCAAACTTCTGCA 59.587 40.000 0.00 0.00 0.00 4.41
4302 7199 6.072508 GGATACTCACATTCAAACTTCTGCAA 60.073 38.462 0.00 0.00 0.00 4.08
4303 7200 4.925068 ACTCACATTCAAACTTCTGCAAC 58.075 39.130 0.00 0.00 0.00 4.17
4304 7201 4.398988 ACTCACATTCAAACTTCTGCAACA 59.601 37.500 0.00 0.00 0.00 3.33
4305 7202 5.105797 ACTCACATTCAAACTTCTGCAACAA 60.106 36.000 0.00 0.00 0.00 2.83
4306 7203 5.342433 TCACATTCAAACTTCTGCAACAAG 58.658 37.500 3.92 3.92 0.00 3.16
4307 7204 4.026310 CACATTCAAACTTCTGCAACAAGC 60.026 41.667 5.19 0.00 45.96 4.01
4308 7205 4.142093 ACATTCAAACTTCTGCAACAAGCT 60.142 37.500 5.19 0.00 45.94 3.74
4309 7206 3.698029 TCAAACTTCTGCAACAAGCTC 57.302 42.857 5.19 0.00 45.94 4.09
4310 7207 3.282021 TCAAACTTCTGCAACAAGCTCT 58.718 40.909 5.19 0.00 45.94 4.09
4311 7208 3.313526 TCAAACTTCTGCAACAAGCTCTC 59.686 43.478 5.19 0.00 45.94 3.20
4312 7209 1.506493 ACTTCTGCAACAAGCTCTCG 58.494 50.000 5.19 0.00 45.94 4.04
4313 7210 1.069204 ACTTCTGCAACAAGCTCTCGA 59.931 47.619 5.19 0.00 45.94 4.04
4314 7211 2.138320 CTTCTGCAACAAGCTCTCGAA 58.862 47.619 0.00 0.00 45.94 3.71
4315 7212 2.238942 TCTGCAACAAGCTCTCGAAA 57.761 45.000 0.00 0.00 45.94 3.46
4321 7218 4.022935 TGCAACAAGCTCTCGAAATCATTT 60.023 37.500 0.00 0.00 45.94 2.32
4322 7219 4.919754 GCAACAAGCTCTCGAAATCATTTT 59.080 37.500 0.00 0.00 41.15 1.82
4452 7349 4.282195 AGTGCAATGGTAGGCTATCTCTAC 59.718 45.833 6.32 0.00 37.08 2.59
4455 7352 5.221521 TGCAATGGTAGGCTATCTCTACAAG 60.222 44.000 6.32 0.00 38.95 3.16
4475 7372 7.750229 ACAAGATTTCATCAGTAAGCTTGAA 57.250 32.000 16.68 0.00 45.51 2.69
4476 7373 8.169977 ACAAGATTTCATCAGTAAGCTTGAAA 57.830 30.769 16.68 10.27 45.51 2.69
4477 7374 8.632679 ACAAGATTTCATCAGTAAGCTTGAAAA 58.367 29.630 16.68 0.00 45.51 2.29
4478 7375 9.467258 CAAGATTTCATCAGTAAGCTTGAAAAA 57.533 29.630 9.86 4.96 45.51 1.94
4590 7487 8.892723 CAAGTTGTGGAATATATACTTTCTGCA 58.107 33.333 0.00 0.00 0.00 4.41
4591 7488 8.438676 AGTTGTGGAATATATACTTTCTGCAC 57.561 34.615 0.00 0.00 0.00 4.57
4617 7514 2.760634 TGCAGTCCGTGTCAATGTAT 57.239 45.000 0.00 0.00 0.00 2.29
4620 7517 4.180817 TGCAGTCCGTGTCAATGTATAAG 58.819 43.478 0.00 0.00 0.00 1.73
4630 7527 6.348132 CGTGTCAATGTATAAGCTTTGTCCAA 60.348 38.462 3.20 0.00 0.00 3.53
4633 7530 8.673711 TGTCAATGTATAAGCTTTGTCCAATAC 58.326 33.333 3.20 6.07 0.00 1.89
4683 7580 8.859090 AGAGACAAACATGAAAAATGATACCAA 58.141 29.630 0.00 0.00 0.00 3.67
4709 7606 5.841957 ATATGACCAAAACATGAAGAGCC 57.158 39.130 0.00 0.00 0.00 4.70
4733 7630 7.260603 CCTAATTCATGGAAATTGAACAGACC 58.739 38.462 3.29 0.00 36.02 3.85
4748 7645 4.134379 ACAGACCATCTACATGAAGCAG 57.866 45.455 0.00 0.00 30.57 4.24
4755 7652 5.048504 ACCATCTACATGAAGCAGTGTTTTG 60.049 40.000 0.00 0.00 30.57 2.44
4757 7654 6.149308 CCATCTACATGAAGCAGTGTTTTGTA 59.851 38.462 0.00 0.00 30.57 2.41
4762 7659 5.068987 ACATGAAGCAGTGTTTTGTAACCAT 59.931 36.000 0.00 0.00 33.15 3.55
4795 7692 5.127845 TCTCTGTTAAGTAGGCATGAGAAGG 59.872 44.000 0.00 0.00 0.00 3.46
4798 7695 5.734720 TGTTAAGTAGGCATGAGAAGGAAG 58.265 41.667 0.00 0.00 0.00 3.46
4820 7723 2.198406 TGTGAAACAGTACACGAGCAC 58.802 47.619 0.00 0.00 45.67 4.40
4824 7727 0.033504 AACAGTACACGAGCACCTGG 59.966 55.000 0.00 0.00 0.00 4.45
4827 7730 1.215647 GTACACGAGCACCTGGGAG 59.784 63.158 0.00 0.00 0.00 4.30
4833 7736 0.036010 CGAGCACCTGGGAGTTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
4836 7739 1.065126 AGCACCTGGGAGTTTGATAGC 60.065 52.381 0.00 0.00 0.00 2.97
4838 7741 2.684927 GCACCTGGGAGTTTGATAGCAT 60.685 50.000 0.00 0.00 0.00 3.79
4840 7743 2.846206 ACCTGGGAGTTTGATAGCATCA 59.154 45.455 0.00 0.00 37.55 3.07
4841 7744 3.209410 CCTGGGAGTTTGATAGCATCAC 58.791 50.000 0.00 0.00 39.39 3.06
4842 7745 3.118112 CCTGGGAGTTTGATAGCATCACT 60.118 47.826 0.00 0.00 39.39 3.41
4877 7782 6.575162 AACGAAGGCTACAGAATTTTGAAT 57.425 33.333 2.48 0.00 0.00 2.57
4878 7783 6.183309 ACGAAGGCTACAGAATTTTGAATC 57.817 37.500 2.48 0.00 0.00 2.52
4879 7784 5.940470 ACGAAGGCTACAGAATTTTGAATCT 59.060 36.000 2.48 0.00 0.00 2.40
4880 7785 6.092807 ACGAAGGCTACAGAATTTTGAATCTC 59.907 38.462 2.48 0.00 0.00 2.75
4881 7786 6.092670 CGAAGGCTACAGAATTTTGAATCTCA 59.907 38.462 2.48 0.00 0.00 3.27
4882 7787 6.998968 AGGCTACAGAATTTTGAATCTCAG 57.001 37.500 2.48 0.00 0.00 3.35
4883 7788 6.479884 AGGCTACAGAATTTTGAATCTCAGT 58.520 36.000 2.48 0.00 0.00 3.41
4885 7790 7.025963 GGCTACAGAATTTTGAATCTCAGTTG 58.974 38.462 2.48 0.00 0.00 3.16
4886 7791 7.308830 GGCTACAGAATTTTGAATCTCAGTTGT 60.309 37.037 2.48 0.00 0.00 3.32
4887 7792 7.748241 GCTACAGAATTTTGAATCTCAGTTGTC 59.252 37.037 2.48 0.00 0.00 3.18
4888 7793 6.662616 ACAGAATTTTGAATCTCAGTTGTCG 58.337 36.000 2.48 0.00 0.00 4.35
4889 7794 6.082338 CAGAATTTTGAATCTCAGTTGTCGG 58.918 40.000 0.00 0.00 0.00 4.79
4890 7795 5.182001 AGAATTTTGAATCTCAGTTGTCGGG 59.818 40.000 0.00 0.00 0.00 5.14
4891 7796 2.472695 TTGAATCTCAGTTGTCGGGG 57.527 50.000 0.00 0.00 0.00 5.73
4892 7797 1.639722 TGAATCTCAGTTGTCGGGGA 58.360 50.000 0.00 0.00 0.00 4.81
4893 7798 2.187958 TGAATCTCAGTTGTCGGGGAT 58.812 47.619 0.00 0.00 30.64 3.85
4894 7799 3.371034 TGAATCTCAGTTGTCGGGGATA 58.629 45.455 0.00 0.00 29.37 2.59
4895 7800 3.967326 TGAATCTCAGTTGTCGGGGATAT 59.033 43.478 0.00 0.00 29.37 1.63
4896 7801 5.144832 TGAATCTCAGTTGTCGGGGATATA 58.855 41.667 0.00 0.00 29.37 0.86
4897 7802 5.010719 TGAATCTCAGTTGTCGGGGATATAC 59.989 44.000 0.00 0.00 29.37 1.47
4898 7803 3.228453 TCTCAGTTGTCGGGGATATACC 58.772 50.000 0.00 0.00 38.08 2.73
4907 7812 3.688159 GGATATACCCCGCGGCGT 61.688 66.667 22.85 21.72 0.00 5.68
4908 7813 2.342650 GGATATACCCCGCGGCGTA 61.343 63.158 23.87 23.87 0.00 4.42
4909 7814 1.586028 GATATACCCCGCGGCGTAA 59.414 57.895 25.22 15.09 0.00 3.18
4910 7815 0.038343 GATATACCCCGCGGCGTAAA 60.038 55.000 25.22 7.33 0.00 2.01
4911 7816 0.319813 ATATACCCCGCGGCGTAAAC 60.320 55.000 25.22 0.00 0.00 2.01
4912 7817 2.362329 TATACCCCGCGGCGTAAACC 62.362 60.000 25.22 0.00 0.00 3.27
4920 7825 2.048316 GGCGTAAACCGGTCGGAA 60.048 61.111 16.90 0.00 38.96 4.30
4921 7826 2.096442 GGCGTAAACCGGTCGGAAG 61.096 63.158 16.90 0.00 38.96 3.46
4922 7827 1.373371 GCGTAAACCGGTCGGAAGT 60.373 57.895 16.90 3.26 38.96 3.01
4923 7828 0.109319 GCGTAAACCGGTCGGAAGTA 60.109 55.000 16.90 2.32 38.96 2.24
4924 7829 1.469767 GCGTAAACCGGTCGGAAGTAT 60.470 52.381 16.90 0.00 38.96 2.12
4925 7830 2.223479 GCGTAAACCGGTCGGAAGTATA 60.223 50.000 16.90 0.00 38.96 1.47
4926 7831 3.733684 GCGTAAACCGGTCGGAAGTATAA 60.734 47.826 16.90 0.00 38.96 0.98
4927 7832 3.791353 CGTAAACCGGTCGGAAGTATAAC 59.209 47.826 16.90 3.70 38.96 1.89
4928 7833 2.967599 AACCGGTCGGAAGTATAACC 57.032 50.000 16.90 0.00 38.96 2.85
4929 7834 1.114627 ACCGGTCGGAAGTATAACCC 58.885 55.000 16.90 0.00 38.96 4.11
4930 7835 0.031178 CCGGTCGGAAGTATAACCCG 59.969 60.000 2.83 0.00 44.22 5.28
4931 7836 0.031178 CGGTCGGAAGTATAACCCGG 59.969 60.000 0.00 0.00 43.16 5.73
4932 7837 0.249615 GGTCGGAAGTATAACCCGGC 60.250 60.000 0.00 0.00 46.29 6.13
4933 7838 0.249615 GTCGGAAGTATAACCCGGCC 60.250 60.000 0.00 0.00 41.74 6.13
4934 7839 1.300388 CGGAAGTATAACCCGGCCG 60.300 63.158 21.04 21.04 39.59 6.13
4935 7840 1.070275 GGAAGTATAACCCGGCCGG 59.930 63.158 37.99 37.99 37.81 6.13
4936 7841 1.402107 GGAAGTATAACCCGGCCGGA 61.402 60.000 45.44 27.01 37.50 5.14
4937 7842 0.249615 GAAGTATAACCCGGCCGGAC 60.250 60.000 45.44 32.77 37.50 4.79
4938 7843 0.688749 AAGTATAACCCGGCCGGACT 60.689 55.000 45.44 34.44 37.50 3.85
4939 7844 0.688749 AGTATAACCCGGCCGGACTT 60.689 55.000 45.44 33.59 37.50 3.01
4940 7845 0.531311 GTATAACCCGGCCGGACTTG 60.531 60.000 45.44 29.86 37.50 3.16
4941 7846 1.688269 TATAACCCGGCCGGACTTGG 61.688 60.000 45.44 29.46 37.50 3.61
4948 7853 2.358984 GCCGGACTTGGCGGTTTA 60.359 61.111 5.05 0.00 46.75 2.01
4949 7854 2.683859 GCCGGACTTGGCGGTTTAC 61.684 63.158 5.05 0.00 46.75 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.266772 AGAATATCTGCTCCACCCAAACA 59.733 43.478 0.00 0.00 0.00 2.83
13 14 3.629398 CAGAATATCTGCTCCACCCAAAC 59.371 47.826 0.00 0.00 37.72 2.93
28 29 7.013655 GCAGAAACAATGTATGTCCCAGAATAT 59.986 37.037 0.00 0.00 42.99 1.28
29 30 6.318648 GCAGAAACAATGTATGTCCCAGAATA 59.681 38.462 0.00 0.00 42.99 1.75
66 67 1.067199 GCCATGCGAACAAAGAAGCG 61.067 55.000 0.00 0.00 0.00 4.68
98 99 0.182299 TCAACCAGGTGCACATGTCA 59.818 50.000 27.83 7.67 0.00 3.58
141 142 2.122768 CTAATGGAGGTTGGAGAGGCT 58.877 52.381 0.00 0.00 0.00 4.58
148 149 1.823899 GCCCGCTAATGGAGGTTGG 60.824 63.158 0.00 0.00 32.76 3.77
159 160 0.107831 AACTTTCACAGTGCCCGCTA 59.892 50.000 0.00 0.00 35.12 4.26
165 166 4.110036 AGTTTTGGAACTTTCACAGTGC 57.890 40.909 0.00 0.00 43.48 4.40
179 180 8.621286 ACTAGTTCAACACTAATGAAGTTTTGG 58.379 33.333 2.32 0.00 43.27 3.28
220 221 1.133356 AGAAAGAGGGCAAAAGCCTGT 60.133 47.619 6.45 0.00 0.00 4.00
221 222 1.543358 GAGAAAGAGGGCAAAAGCCTG 59.457 52.381 6.45 0.00 0.00 4.85
229 230 4.380843 TGTTATTTGGAGAAAGAGGGCA 57.619 40.909 0.00 0.00 0.00 5.36
239 240 6.204688 TGTTGCTACTCAGTTGTTATTTGGAG 59.795 38.462 0.00 0.00 0.00 3.86
246 247 7.221450 AGGTAAATGTTGCTACTCAGTTGTTA 58.779 34.615 0.00 0.00 0.00 2.41
259 260 1.076332 ACGAGCGAGGTAAATGTTGC 58.924 50.000 0.00 0.00 0.00 4.17
261 262 5.927954 TTTTAACGAGCGAGGTAAATGTT 57.072 34.783 5.72 0.00 0.00 2.71
262 263 5.927954 TTTTTAACGAGCGAGGTAAATGT 57.072 34.783 5.72 0.00 0.00 2.71
287 288 5.332106 TGCTAAGATCCTAGGTCTCTGAT 57.668 43.478 9.08 1.72 0.00 2.90
288 289 4.797912 TGCTAAGATCCTAGGTCTCTGA 57.202 45.455 9.08 4.97 0.00 3.27
289 290 5.538053 TCAATGCTAAGATCCTAGGTCTCTG 59.462 44.000 9.08 8.42 0.00 3.35
290 291 5.710646 TCAATGCTAAGATCCTAGGTCTCT 58.289 41.667 9.08 9.57 0.00 3.10
291 292 5.047377 CCTCAATGCTAAGATCCTAGGTCTC 60.047 48.000 9.08 7.31 0.00 3.36
310 311 5.999205 ATATTTGAAATGTGGCACCTCAA 57.001 34.783 16.26 17.17 0.00 3.02
311 312 5.716228 AGAATATTTGAAATGTGGCACCTCA 59.284 36.000 16.26 12.20 0.00 3.86
404 2242 7.819415 GGCAGATTTTCTAGGTTAATGCTTTTT 59.181 33.333 0.00 0.00 0.00 1.94
405 2243 7.039082 TGGCAGATTTTCTAGGTTAATGCTTTT 60.039 33.333 0.00 0.00 0.00 2.27
406 2244 6.437162 TGGCAGATTTTCTAGGTTAATGCTTT 59.563 34.615 0.00 0.00 0.00 3.51
441 3195 1.040339 TTTGTTGTGTGTGGGGGAGC 61.040 55.000 0.00 0.00 0.00 4.70
478 3232 3.409851 TGAGCGATGATTTGTTGCATC 57.590 42.857 0.00 0.00 37.99 3.91
479 3233 4.109766 CAATGAGCGATGATTTGTTGCAT 58.890 39.130 0.00 0.00 0.00 3.96
495 3249 7.045483 CGTTTTCAACATTTTTGTTGCAATGAG 60.045 33.333 0.59 0.00 46.21 2.90
498 3252 6.522510 CACGTTTTCAACATTTTTGTTGCAAT 59.477 30.769 0.59 0.00 46.21 3.56
505 3259 6.145807 TGTGACACGTTTTCAACATTTTTG 57.854 33.333 0.22 0.00 0.00 2.44
552 3311 6.040842 AGGGTTTTATCTTTCGCATGCATATT 59.959 34.615 19.57 0.00 0.00 1.28
555 3314 3.701040 AGGGTTTTATCTTTCGCATGCAT 59.299 39.130 19.57 5.56 0.00 3.96
557 3316 3.782889 AGGGTTTTATCTTTCGCATGC 57.217 42.857 7.91 7.91 0.00 4.06
558 3317 4.881850 AGGTAGGGTTTTATCTTTCGCATG 59.118 41.667 0.00 0.00 0.00 4.06
559 3318 5.112129 AGGTAGGGTTTTATCTTTCGCAT 57.888 39.130 0.00 0.00 0.00 4.73
560 3319 4.563140 AGGTAGGGTTTTATCTTTCGCA 57.437 40.909 0.00 0.00 0.00 5.10
561 3320 4.510711 GCTAGGTAGGGTTTTATCTTTCGC 59.489 45.833 0.00 0.00 0.00 4.70
562 3321 5.055144 GGCTAGGTAGGGTTTTATCTTTCG 58.945 45.833 0.00 0.00 0.00 3.46
563 3322 6.056236 CAGGCTAGGTAGGGTTTTATCTTTC 58.944 44.000 0.00 0.00 0.00 2.62
587 3346 2.616376 TGTACCATGAACAATATGCCGC 59.384 45.455 0.00 0.00 0.00 6.53
594 3353 4.556501 CGTTTGCTGTGTACCATGAACAAT 60.557 41.667 0.00 0.00 0.00 2.71
602 3361 0.536233 ATGGCGTTTGCTGTGTACCA 60.536 50.000 0.00 0.00 42.25 3.25
658 3426 3.114065 GCGTTCCTCTCGTTAAATCGAT 58.886 45.455 0.00 0.00 39.12 3.59
669 3437 4.116878 GCCATGAGCGTTCCTCTC 57.883 61.111 0.00 0.00 41.35 3.20
714 3482 0.179073 AATTCGGCTGACTGATCCGG 60.179 55.000 0.00 0.00 43.10 5.14
726 3494 1.262950 GCAAAAACAACCCAATTCGGC 59.737 47.619 0.00 0.00 0.00 5.54
791 3565 3.215975 CCTTCCCGTGTGGAGTTAAAAA 58.784 45.455 0.00 0.00 46.24 1.94
792 3566 2.853705 CCTTCCCGTGTGGAGTTAAAA 58.146 47.619 0.00 0.00 46.24 1.52
793 3567 1.543871 GCCTTCCCGTGTGGAGTTAAA 60.544 52.381 0.00 0.00 46.24 1.52
795 3569 1.675219 GCCTTCCCGTGTGGAGTTA 59.325 57.895 0.00 0.00 46.24 2.24
1249 4100 0.249398 AACCTCTCCCCGAAATCACG 59.751 55.000 0.00 0.00 0.00 4.35
1494 4346 1.303309 GCGGATGCAGTTGCTAGAAT 58.697 50.000 5.62 0.00 42.66 2.40
1497 4349 2.182842 GGGCGGATGCAGTTGCTAG 61.183 63.158 5.62 0.00 45.35 3.42
1504 4356 0.179129 GTTCATTTGGGCGGATGCAG 60.179 55.000 0.00 0.00 45.35 4.41
1599 4459 7.276658 AGCTTAATCAGAACTAATCAAGTCACG 59.723 37.037 0.00 0.00 37.50 4.35
1690 4550 2.859165 TGAAGGTGACTAAGGCTTGG 57.141 50.000 10.69 9.94 42.68 3.61
1736 4604 2.169978 TCAGCTGGAGAGAATCACATGG 59.830 50.000 15.13 0.00 37.82 3.66
1740 4608 4.405116 AAGATCAGCTGGAGAGAATCAC 57.595 45.455 15.13 0.00 37.82 3.06
1759 4627 6.521151 AATGGCTTCTTGAATCACCTAAAG 57.479 37.500 0.00 0.00 0.00 1.85
1763 4631 5.574188 ACTAAATGGCTTCTTGAATCACCT 58.426 37.500 0.00 0.00 0.00 4.00
1764 4632 5.904362 ACTAAATGGCTTCTTGAATCACC 57.096 39.130 0.00 0.00 0.00 4.02
1767 4635 5.163509 GGGGAACTAAATGGCTTCTTGAATC 60.164 44.000 0.00 0.00 0.00 2.52
1768 4636 4.711846 GGGGAACTAAATGGCTTCTTGAAT 59.288 41.667 0.00 0.00 0.00 2.57
1769 4637 4.086457 GGGGAACTAAATGGCTTCTTGAA 58.914 43.478 0.00 0.00 0.00 2.69
1771 4639 2.423538 CGGGGAACTAAATGGCTTCTTG 59.576 50.000 0.00 0.00 0.00 3.02
1772 4640 2.723273 CGGGGAACTAAATGGCTTCTT 58.277 47.619 0.00 0.00 0.00 2.52
1773 4641 1.682087 GCGGGGAACTAAATGGCTTCT 60.682 52.381 0.00 0.00 0.00 2.85
1774 4642 0.738975 GCGGGGAACTAAATGGCTTC 59.261 55.000 0.00 0.00 0.00 3.86
1775 4643 0.039035 TGCGGGGAACTAAATGGCTT 59.961 50.000 0.00 0.00 0.00 4.35
1776 4644 0.039035 TTGCGGGGAACTAAATGGCT 59.961 50.000 0.00 0.00 0.00 4.75
1777 4645 0.892063 TTTGCGGGGAACTAAATGGC 59.108 50.000 0.00 0.00 0.00 4.40
1778 4646 3.669251 TTTTTGCGGGGAACTAAATGG 57.331 42.857 0.00 0.00 0.00 3.16
1798 4666 7.992608 ACAACTCCAATTAAATGGCTTCTTTTT 59.007 29.630 4.54 0.00 40.46 1.94
1799 4667 7.508687 ACAACTCCAATTAAATGGCTTCTTTT 58.491 30.769 4.54 0.00 40.46 2.27
1800 4668 7.066307 ACAACTCCAATTAAATGGCTTCTTT 57.934 32.000 4.54 0.00 40.46 2.52
1811 4679 8.684386 TGTTTGATCACTACAACTCCAATTAA 57.316 30.769 7.25 0.00 0.00 1.40
1934 4802 6.238211 CCCTTCAAATGTCTCGCTAATTACAG 60.238 42.308 0.00 0.00 0.00 2.74
1944 4812 3.526931 TCTAGCCCTTCAAATGTCTCG 57.473 47.619 0.00 0.00 0.00 4.04
1954 4822 9.213799 CAATCTATCACTTTAATCTAGCCCTTC 57.786 37.037 0.00 0.00 0.00 3.46
1955 4823 7.663493 GCAATCTATCACTTTAATCTAGCCCTT 59.337 37.037 0.00 0.00 0.00 3.95
1956 4824 7.164803 GCAATCTATCACTTTAATCTAGCCCT 58.835 38.462 0.00 0.00 0.00 5.19
1957 4825 6.936900 TGCAATCTATCACTTTAATCTAGCCC 59.063 38.462 0.00 0.00 0.00 5.19
1968 4836 9.570468 ACATGATAAGAATGCAATCTATCACTT 57.430 29.630 18.23 10.49 30.00 3.16
1973 4841 9.664332 GGAGTACATGATAAGAATGCAATCTAT 57.336 33.333 4.33 0.00 0.00 1.98
1993 4861 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1994 4862 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1995 4863 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1996 4864 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1997 4865 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1998 4866 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
1999 4867 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2000 4868 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2001 4869 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2002 4870 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2003 4871 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2004 4872 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2005 4873 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2006 4874 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2007 4875 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2010 4878 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2011 4879 8.368668 AGCTAGTACAAAGTTGAGTCACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2012 4880 7.897864 AGCTAGTACAAAGTTGAGTCACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2013 4881 7.286215 AGCTAGTACAAAGTTGAGTCACTTA 57.714 36.000 0.00 0.00 35.87 2.24
2014 4882 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
2015 4883 5.793030 AGCTAGTACAAAGTTGAGTCACT 57.207 39.130 0.00 0.00 0.00 3.41
2016 4884 6.479001 TCAAAGCTAGTACAAAGTTGAGTCAC 59.521 38.462 0.00 0.00 0.00 3.67
2017 4885 6.479001 GTCAAAGCTAGTACAAAGTTGAGTCA 59.521 38.462 0.00 0.00 0.00 3.41
2018 4886 6.345882 CGTCAAAGCTAGTACAAAGTTGAGTC 60.346 42.308 0.00 0.00 0.00 3.36
2019 4887 5.462398 CGTCAAAGCTAGTACAAAGTTGAGT 59.538 40.000 0.00 0.00 0.00 3.41
2020 4888 5.107453 CCGTCAAAGCTAGTACAAAGTTGAG 60.107 44.000 0.00 0.00 0.00 3.02
2021 4889 4.748102 CCGTCAAAGCTAGTACAAAGTTGA 59.252 41.667 0.00 0.00 0.00 3.18
2022 4890 4.748102 TCCGTCAAAGCTAGTACAAAGTTG 59.252 41.667 0.00 0.00 0.00 3.16
2023 4891 4.952460 TCCGTCAAAGCTAGTACAAAGTT 58.048 39.130 0.00 0.00 0.00 2.66
2024 4892 4.557205 CTCCGTCAAAGCTAGTACAAAGT 58.443 43.478 0.00 0.00 0.00 2.66
2025 4893 3.927142 CCTCCGTCAAAGCTAGTACAAAG 59.073 47.826 0.00 0.00 0.00 2.77
2026 4894 3.306502 CCCTCCGTCAAAGCTAGTACAAA 60.307 47.826 0.00 0.00 0.00 2.83
2027 4895 2.232941 CCCTCCGTCAAAGCTAGTACAA 59.767 50.000 0.00 0.00 0.00 2.41
2028 4896 1.822990 CCCTCCGTCAAAGCTAGTACA 59.177 52.381 0.00 0.00 0.00 2.90
2029 4897 2.097825 TCCCTCCGTCAAAGCTAGTAC 58.902 52.381 0.00 0.00 0.00 2.73
2030 4898 2.291411 ACTCCCTCCGTCAAAGCTAGTA 60.291 50.000 0.00 0.00 0.00 1.82
2031 4899 1.187087 CTCCCTCCGTCAAAGCTAGT 58.813 55.000 0.00 0.00 0.00 2.57
2032 4900 1.187087 ACTCCCTCCGTCAAAGCTAG 58.813 55.000 0.00 0.00 0.00 3.42
2033 4901 2.097825 GTACTCCCTCCGTCAAAGCTA 58.902 52.381 0.00 0.00 0.00 3.32
2034 4902 0.896226 GTACTCCCTCCGTCAAAGCT 59.104 55.000 0.00 0.00 0.00 3.74
2035 4903 0.896226 AGTACTCCCTCCGTCAAAGC 59.104 55.000 0.00 0.00 0.00 3.51
2036 4904 5.109903 CAAATAGTACTCCCTCCGTCAAAG 58.890 45.833 0.00 0.00 0.00 2.77
2037 4905 4.081309 CCAAATAGTACTCCCTCCGTCAAA 60.081 45.833 0.00 0.00 0.00 2.69
2038 4906 3.449737 CCAAATAGTACTCCCTCCGTCAA 59.550 47.826 0.00 0.00 0.00 3.18
2039 4907 3.028850 CCAAATAGTACTCCCTCCGTCA 58.971 50.000 0.00 0.00 0.00 4.35
2040 4908 2.223994 GCCAAATAGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
2041 4909 1.761198 GCCAAATAGTACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
2042 4910 2.040178 AGCCAAATAGTACTCCCTCCG 58.960 52.381 0.00 0.00 0.00 4.63
2043 4911 3.454812 TGAAGCCAAATAGTACTCCCTCC 59.545 47.826 0.00 0.00 0.00 4.30
2044 4912 4.162509 ACTGAAGCCAAATAGTACTCCCTC 59.837 45.833 0.00 0.00 0.00 4.30
2045 4913 4.080863 CACTGAAGCCAAATAGTACTCCCT 60.081 45.833 0.00 0.00 0.00 4.20
2046 4914 4.192317 CACTGAAGCCAAATAGTACTCCC 58.808 47.826 0.00 0.00 0.00 4.30
2047 4915 4.631813 CACACTGAAGCCAAATAGTACTCC 59.368 45.833 0.00 0.00 0.00 3.85
2048 4916 4.631813 CCACACTGAAGCCAAATAGTACTC 59.368 45.833 0.00 0.00 0.00 2.59
2049 4917 4.565652 CCCACACTGAAGCCAAATAGTACT 60.566 45.833 0.00 0.00 0.00 2.73
2065 4933 2.675658 AACAACATAAGCCCCACACT 57.324 45.000 0.00 0.00 0.00 3.55
2077 4945 4.207165 AGCCAGTCAACTGTAAACAACAT 58.793 39.130 9.19 0.00 42.27 2.71
2087 4955 1.563435 CGCAGTGAGCCAGTCAACTG 61.563 60.000 3.08 3.08 43.40 3.16
2088 4956 1.301244 CGCAGTGAGCCAGTCAACT 60.301 57.895 0.00 0.00 41.38 3.16
2104 4972 5.230942 AGTGCAGAAGACATATATAACCGC 58.769 41.667 0.00 0.00 0.00 5.68
2106 4974 8.713271 GCTAAAGTGCAGAAGACATATATAACC 58.287 37.037 0.00 0.00 0.00 2.85
2108 4976 9.481340 CAGCTAAAGTGCAGAAGACATATATAA 57.519 33.333 0.00 0.00 34.99 0.98
2110 4978 6.426328 GCAGCTAAAGTGCAGAAGACATATAT 59.574 38.462 0.00 0.00 40.86 0.86
2130 5001 8.455903 AACAGTATATTGTAATCAATGCAGCT 57.544 30.769 0.78 0.00 43.17 4.24
2132 5003 9.655769 GTGAACAGTATATTGTAATCAATGCAG 57.344 33.333 0.78 0.00 43.17 4.41
2150 5021 3.430042 AGATGATGCCTTGTGAACAGT 57.570 42.857 0.00 0.00 0.00 3.55
2165 5036 3.754850 CAGAACCTGCATGAACAAGATGA 59.245 43.478 0.00 0.00 0.00 2.92
2228 5099 6.316390 CGAGTGCTGGTTTAAATCCTATCTTT 59.684 38.462 0.00 0.00 0.00 2.52
2431 5302 6.071728 CCTCAACAGCAATTTTTACTGGATCT 60.072 38.462 0.00 0.00 35.70 2.75
2458 5329 8.413229 CAATTTTCTTTTCTAAACCTCTCCACA 58.587 33.333 0.00 0.00 0.00 4.17
2654 5525 1.171308 CAGGTCTGGTTTCTGCATGG 58.829 55.000 0.00 0.00 0.00 3.66
2781 5652 1.377202 GCCACCTCCTTTCGCATGA 60.377 57.895 0.00 0.00 0.00 3.07
3118 6006 1.872773 AGGAGGTCAGCTAAAGGGAG 58.127 55.000 0.00 0.00 0.00 4.30
3131 6019 3.511146 CCAATTGCACAATGTAAGGAGGT 59.489 43.478 0.00 0.00 0.00 3.85
3406 6294 9.921637 AAATAATCCACATTTGATACGTTGTTT 57.078 25.926 0.00 0.00 0.00 2.83
3443 6331 2.295885 CAGGCAACATGGAGAAGATCC 58.704 52.381 0.00 0.00 45.09 3.36
3593 6481 9.091784 GCTAGGGTGTTAGTTTTACTAATGTAC 57.908 37.037 2.92 0.00 42.06 2.90
3596 6484 6.257193 CCGCTAGGGTGTTAGTTTTACTAATG 59.743 42.308 6.02 0.00 42.06 1.90
3619 6509 2.098607 TGGACGTAAGCTCAATAGACCG 59.901 50.000 0.00 0.00 45.62 4.79
3629 6519 7.497595 TCTACAATGATATTTGGACGTAAGCT 58.502 34.615 0.00 0.00 45.62 3.74
3691 6581 1.822250 GAGCAATCCGAACGATCCGC 61.822 60.000 0.00 0.00 32.11 5.54
3697 6587 2.644555 ATCCCCGAGCAATCCGAACG 62.645 60.000 0.00 0.00 0.00 3.95
3772 6662 7.218773 CGTTTTATTACATTGCTCCACATCTTG 59.781 37.037 0.00 0.00 0.00 3.02
3802 6692 5.458779 CGTGTTTCCTTTGTTTGATTTCCTC 59.541 40.000 0.00 0.00 0.00 3.71
3808 6698 4.744631 GCATTCGTGTTTCCTTTGTTTGAT 59.255 37.500 0.00 0.00 0.00 2.57
3838 6728 0.467804 GAGGGAGGGACTTGCTGATC 59.532 60.000 0.00 0.00 41.55 2.92
4024 6919 5.882557 ACAAACCAATTTACAATTTGGCACA 59.117 32.000 13.11 0.00 45.13 4.57
4091 6986 7.382218 CCTTTACCAACAGACAATTCATTCAAC 59.618 37.037 0.00 0.00 0.00 3.18
4254 7151 6.267471 TCCCATTTTTCTGTGCAGTTATTTCT 59.733 34.615 0.00 0.00 0.00 2.52
4264 7161 4.458989 TGTGAGTATCCCATTTTTCTGTGC 59.541 41.667 0.00 0.00 0.00 4.57
4276 7173 5.163713 GCAGAAGTTTGAATGTGAGTATCCC 60.164 44.000 0.00 0.00 0.00 3.85
4279 7176 6.262944 TGTTGCAGAAGTTTGAATGTGAGTAT 59.737 34.615 0.00 0.00 0.00 2.12
4280 7177 5.588246 TGTTGCAGAAGTTTGAATGTGAGTA 59.412 36.000 0.00 0.00 0.00 2.59
4282 7179 4.923893 TGTTGCAGAAGTTTGAATGTGAG 58.076 39.130 0.00 0.00 0.00 3.51
4283 7180 4.979943 TGTTGCAGAAGTTTGAATGTGA 57.020 36.364 0.00 0.00 0.00 3.58
4285 7182 4.114794 GCTTGTTGCAGAAGTTTGAATGT 58.885 39.130 8.79 0.00 42.31 2.71
4286 7183 4.365723 AGCTTGTTGCAGAAGTTTGAATG 58.634 39.130 8.79 0.00 45.94 2.67
4287 7184 4.340381 AGAGCTTGTTGCAGAAGTTTGAAT 59.660 37.500 8.79 0.00 45.94 2.57
4288 7185 3.696051 AGAGCTTGTTGCAGAAGTTTGAA 59.304 39.130 8.79 0.00 45.94 2.69
4289 7186 3.282021 AGAGCTTGTTGCAGAAGTTTGA 58.718 40.909 8.79 0.00 45.94 2.69
4290 7187 3.625938 GAGAGCTTGTTGCAGAAGTTTG 58.374 45.455 8.79 0.00 45.94 2.93
4291 7188 2.289002 CGAGAGCTTGTTGCAGAAGTTT 59.711 45.455 8.79 0.00 45.94 2.66
4292 7189 1.869767 CGAGAGCTTGTTGCAGAAGTT 59.130 47.619 8.79 3.61 45.94 2.66
4293 7190 1.069204 TCGAGAGCTTGTTGCAGAAGT 59.931 47.619 8.79 0.00 45.94 3.01
4294 7191 1.788258 TCGAGAGCTTGTTGCAGAAG 58.212 50.000 0.00 3.70 45.94 2.85
4295 7192 2.238942 TTCGAGAGCTTGTTGCAGAA 57.761 45.000 0.00 0.00 45.94 3.02
4296 7193 2.238942 TTTCGAGAGCTTGTTGCAGA 57.761 45.000 0.00 0.00 45.94 4.26
4297 7194 2.481568 TGATTTCGAGAGCTTGTTGCAG 59.518 45.455 0.00 0.00 45.94 4.41
4298 7195 2.493035 TGATTTCGAGAGCTTGTTGCA 58.507 42.857 0.00 0.00 45.94 4.08
4299 7196 3.754188 ATGATTTCGAGAGCTTGTTGC 57.246 42.857 0.00 0.00 43.29 4.17
4300 7197 6.129009 CCAAAAATGATTTCGAGAGCTTGTTG 60.129 38.462 0.00 0.00 0.00 3.33
4301 7198 5.922544 CCAAAAATGATTTCGAGAGCTTGTT 59.077 36.000 0.00 0.00 0.00 2.83
4302 7199 5.010012 ACCAAAAATGATTTCGAGAGCTTGT 59.990 36.000 0.00 0.00 0.00 3.16
4303 7200 5.464168 ACCAAAAATGATTTCGAGAGCTTG 58.536 37.500 0.00 0.00 0.00 4.01
4304 7201 5.241506 TGACCAAAAATGATTTCGAGAGCTT 59.758 36.000 0.00 0.00 0.00 3.74
4305 7202 4.761739 TGACCAAAAATGATTTCGAGAGCT 59.238 37.500 0.00 0.00 0.00 4.09
4306 7203 5.046910 TGACCAAAAATGATTTCGAGAGC 57.953 39.130 0.00 0.00 0.00 4.09
4307 7204 6.261118 GGATGACCAAAAATGATTTCGAGAG 58.739 40.000 0.00 0.00 35.97 3.20
4308 7205 5.125417 GGGATGACCAAAAATGATTTCGAGA 59.875 40.000 0.00 0.00 39.85 4.04
4309 7206 5.343249 GGGATGACCAAAAATGATTTCGAG 58.657 41.667 0.00 0.00 39.85 4.04
4310 7207 5.323371 GGGATGACCAAAAATGATTTCGA 57.677 39.130 0.00 0.00 39.85 3.71
4342 7239 7.067494 GCAGATAATGTGGGATTGTTCTTTACT 59.933 37.037 0.00 0.00 0.00 2.24
4452 7349 9.467258 TTTTTCAAGCTTACTGATGAAATCTTG 57.533 29.630 9.23 0.00 45.81 3.02
4532 7429 2.542020 TTTGACTGCAGAATCGTCCA 57.458 45.000 23.35 0.00 0.00 4.02
4590 7487 1.333619 GACACGGACTGCAAAACATGT 59.666 47.619 0.00 0.00 0.00 3.21
4591 7488 1.333308 TGACACGGACTGCAAAACATG 59.667 47.619 0.00 0.00 0.00 3.21
4683 7580 8.416329 GGCTCTTCATGTTTTGGTCATATTTAT 58.584 33.333 0.00 0.00 0.00 1.40
4709 7606 7.829725 TGGTCTGTTCAATTTCCATGAATTAG 58.170 34.615 0.00 0.00 38.89 1.73
4733 7630 6.005583 ACAAAACACTGCTTCATGTAGATG 57.994 37.500 3.14 0.00 32.51 2.90
4762 7659 6.013725 TGCCTACTTAACAGAGATCCAAAAGA 60.014 38.462 0.00 0.00 0.00 2.52
4773 7670 5.023452 TCCTTCTCATGCCTACTTAACAGA 58.977 41.667 0.00 0.00 0.00 3.41
4795 7692 4.143305 GCTCGTGTACTGTTTCACATCTTC 60.143 45.833 13.28 0.00 34.66 2.87
4798 7695 3.057019 TGCTCGTGTACTGTTTCACATC 58.943 45.455 13.28 5.16 34.66 3.06
4808 7711 1.228769 TCCCAGGTGCTCGTGTACT 60.229 57.895 5.71 0.00 0.00 2.73
4820 7723 3.118112 AGTGATGCTATCAAACTCCCAGG 60.118 47.826 1.17 0.00 41.69 4.45
4873 7778 1.639722 TCCCCGACAACTGAGATTCA 58.360 50.000 0.00 0.00 0.00 2.57
4877 7782 3.228453 GGTATATCCCCGACAACTGAGA 58.772 50.000 0.00 0.00 0.00 3.27
4878 7783 3.662247 GGTATATCCCCGACAACTGAG 57.338 52.381 0.00 0.00 0.00 3.35
4890 7795 1.876497 TTACGCCGCGGGGTATATCC 61.876 60.000 43.35 18.95 41.87 2.59
4891 7796 0.038343 TTTACGCCGCGGGGTATATC 60.038 55.000 43.35 19.66 41.87 1.63
4892 7797 0.319813 GTTTACGCCGCGGGGTATAT 60.320 55.000 43.35 27.41 41.87 0.86
4893 7798 1.067250 GTTTACGCCGCGGGGTATA 59.933 57.895 43.35 37.33 41.87 1.47
4894 7799 2.202919 GTTTACGCCGCGGGGTAT 60.203 61.111 43.35 28.41 41.87 2.73
4895 7800 4.449568 GGTTTACGCCGCGGGGTA 62.450 66.667 41.10 41.10 41.53 3.69
4903 7808 2.048316 TTCCGACCGGTTTACGCC 60.048 61.111 9.42 0.00 42.52 5.68
4904 7809 0.109319 TACTTCCGACCGGTTTACGC 60.109 55.000 9.42 0.00 42.52 4.42
4905 7810 2.566952 ATACTTCCGACCGGTTTACG 57.433 50.000 9.42 8.07 43.80 3.18
4906 7811 4.112634 GGTTATACTTCCGACCGGTTTAC 58.887 47.826 9.42 0.00 36.47 2.01
4907 7812 3.132111 GGGTTATACTTCCGACCGGTTTA 59.868 47.826 9.42 0.00 36.47 2.01
4908 7813 2.093500 GGGTTATACTTCCGACCGGTTT 60.093 50.000 9.42 0.00 36.47 3.27
4909 7814 1.482182 GGGTTATACTTCCGACCGGTT 59.518 52.381 9.42 0.00 36.47 4.44
4910 7815 1.114627 GGGTTATACTTCCGACCGGT 58.885 55.000 6.92 6.92 36.47 5.28
4911 7816 0.031178 CGGGTTATACTTCCGACCGG 59.969 60.000 0.00 0.00 45.96 5.28
4912 7817 0.031178 CCGGGTTATACTTCCGACCG 59.969 60.000 0.00 0.00 45.96 4.79
4913 7818 0.249615 GCCGGGTTATACTTCCGACC 60.250 60.000 2.18 0.00 45.96 4.79
4914 7819 0.249615 GGCCGGGTTATACTTCCGAC 60.250 60.000 2.18 0.00 45.96 4.79
4915 7820 1.737355 CGGCCGGGTTATACTTCCGA 61.737 60.000 20.10 0.00 45.96 4.55
4916 7821 1.300388 CGGCCGGGTTATACTTCCG 60.300 63.158 20.10 0.00 43.05 4.30
4917 7822 1.070275 CCGGCCGGGTTATACTTCC 59.930 63.158 37.42 0.00 0.00 3.46
4918 7823 0.249615 GTCCGGCCGGGTTATACTTC 60.250 60.000 42.36 17.50 37.00 3.01
4919 7824 0.688749 AGTCCGGCCGGGTTATACTT 60.689 55.000 42.36 19.25 37.00 2.24
4920 7825 0.688749 AAGTCCGGCCGGGTTATACT 60.689 55.000 42.36 33.25 37.00 2.12
4921 7826 0.531311 CAAGTCCGGCCGGGTTATAC 60.531 60.000 42.36 31.58 37.00 1.47
4922 7827 1.688269 CCAAGTCCGGCCGGGTTATA 61.688 60.000 42.36 22.14 37.00 0.98
4923 7828 2.587889 CAAGTCCGGCCGGGTTAT 59.412 61.111 42.36 23.83 37.00 1.89
4924 7829 3.708544 CCAAGTCCGGCCGGGTTA 61.709 66.667 42.36 22.99 37.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.