Multiple sequence alignment - TraesCS3D01G308000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G308000 chr3D 100.000 2825 0 0 1 2825 421665532 421668356 0.000000e+00 5217.0
1 TraesCS3D01G308000 chr3D 100.000 56 0 0 698 753 421666284 421666229 1.380000e-18 104.0
2 TraesCS3D01G308000 chr3D 92.157 51 2 2 723 773 600716025 600716073 1.400000e-08 71.3
3 TraesCS3D01G308000 chr3A 96.907 679 12 2 754 1432 529206736 529206067 0.000000e+00 1129.0
4 TraesCS3D01G308000 chr3A 92.154 701 25 12 1 698 529207411 529206738 0.000000e+00 963.0
5 TraesCS3D01G308000 chr3A 86.250 880 97 13 1511 2369 529205987 529205111 0.000000e+00 933.0
6 TraesCS3D01G308000 chr3A 80.879 387 58 11 2443 2821 1918317 1917939 9.900000e-75 291.0
7 TraesCS3D01G308000 chr3A 80.463 389 55 16 2443 2821 439733018 439733395 7.710000e-71 278.0
8 TraesCS3D01G308000 chr3A 88.679 53 5 1 714 765 416192298 416192350 2.350000e-06 63.9
9 TraesCS3D01G308000 chr3B 95.588 680 13 9 754 1432 549032545 549033208 0.000000e+00 1074.0
10 TraesCS3D01G308000 chr3B 96.890 418 13 0 1511 1928 549033279 549033696 0.000000e+00 701.0
11 TraesCS3D01G308000 chr3B 93.906 361 22 0 1 361 549025625 549025985 1.910000e-151 545.0
12 TraesCS3D01G308000 chr3B 78.063 351 38 18 360 698 549032220 549032543 4.810000e-43 185.0
13 TraesCS3D01G308000 chr6A 85.352 355 40 8 2472 2823 613249339 613249684 9.620000e-95 357.0
14 TraesCS3D01G308000 chr7D 84.511 368 46 8 2443 2804 444374498 444374860 1.240000e-93 353.0
15 TraesCS3D01G308000 chr7D 80.206 389 60 11 2446 2825 193991055 193990675 2.770000e-70 276.0
16 TraesCS3D01G308000 chrUn 81.282 390 54 16 2443 2825 111131658 111132035 5.920000e-77 298.0
17 TraesCS3D01G308000 chr5A 81.818 363 51 10 2443 2798 667930644 667930998 9.900000e-75 291.0
18 TraesCS3D01G308000 chr1A 80.720 389 56 13 2443 2821 581866703 581867082 4.610000e-73 285.0
19 TraesCS3D01G308000 chr1A 93.333 45 1 2 691 734 584993932 584993975 6.530000e-07 65.8
20 TraesCS3D01G308000 chr7A 80.463 389 56 15 2444 2821 579565753 579566132 2.140000e-71 279.0
21 TraesCS3D01G308000 chr5B 89.394 66 6 1 688 753 386653856 386653920 6.490000e-12 82.4
22 TraesCS3D01G308000 chr5B 92.857 42 1 2 690 731 496801933 496801894 3.040000e-05 60.2
23 TraesCS3D01G308000 chr2B 78.626 131 21 5 519 643 47643607 47643736 2.330000e-11 80.5
24 TraesCS3D01G308000 chr6B 91.525 59 1 4 698 756 447894964 447895018 8.390000e-11 78.7
25 TraesCS3D01G308000 chr6B 87.097 62 5 3 697 757 289177460 289177519 1.820000e-07 67.6
26 TraesCS3D01G308000 chr4D 86.111 72 2 4 691 755 19465616 19465546 1.400000e-08 71.3
27 TraesCS3D01G308000 chr1D 87.931 58 7 0 697 754 22889955 22889898 5.050000e-08 69.4
28 TraesCS3D01G308000 chr1D 95.238 42 1 1 690 731 58438879 58438839 6.530000e-07 65.8
29 TraesCS3D01G308000 chr2A 91.304 46 2 2 720 764 17927535 17927579 8.450000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G308000 chr3D 421665532 421668356 2824 False 5217.000000 5217 100.000000 1 2825 1 chr3D.!!$F1 2824
1 TraesCS3D01G308000 chr3A 529205111 529207411 2300 True 1008.333333 1129 91.770333 1 2369 3 chr3A.!!$R2 2368
2 TraesCS3D01G308000 chr3B 549032220 549033696 1476 False 653.333333 1074 90.180333 360 1928 3 chr3B.!!$F2 1568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 886 0.31716 TTGTCTTCCGTGAGCGTGAT 59.683 50.0 0.0 0.0 36.15 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 2527 0.032678 CCACACACTTCTCTCAGCGT 59.967 55.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.267084 GTAATTCCTTCCAAGCAAATTTTGTTA 57.733 29.630 10.65 0.00 0.00 2.41
86 87 4.026356 ACAAGAATGTTGGCTAGCTTCT 57.974 40.909 15.72 12.23 35.91 2.85
267 268 1.061131 CACAACAGATCGATTCGCCAC 59.939 52.381 0.00 0.00 0.00 5.01
330 331 9.383519 TCTCTTAAATATGTTGACAATGGAGTC 57.616 33.333 0.00 0.00 38.99 3.36
369 370 2.040412 ACACATTCCCTTCCTCTGTTCC 59.960 50.000 0.00 0.00 0.00 3.62
442 453 4.744137 CAGCAACAATCGAAATCACCAAAA 59.256 37.500 0.00 0.00 0.00 2.44
454 465 6.697019 CGAAATCACCAAAATTCAGTGTTCTT 59.303 34.615 0.00 0.00 33.21 2.52
469 480 2.941720 TGTTCTTGGTTTGCATTTTGGC 59.058 40.909 0.00 0.00 0.00 4.52
505 516 8.871686 AAACATTCACTAGAATTCAACCAAAC 57.128 30.769 8.44 0.00 42.46 2.93
591 605 7.602753 ACTGAAAGGCAAATATTTTAGTGTCC 58.397 34.615 0.00 0.00 39.30 4.02
593 607 7.957002 TGAAAGGCAAATATTTTAGTGTCCAA 58.043 30.769 0.00 0.00 0.00 3.53
605 637 7.815840 TTTTAGTGTCCAATGAAATCACTGA 57.184 32.000 0.00 0.00 39.27 3.41
606 638 7.815840 TTTAGTGTCCAATGAAATCACTGAA 57.184 32.000 0.00 0.00 39.27 3.02
607 639 8.408043 TTTAGTGTCCAATGAAATCACTGAAT 57.592 30.769 0.00 0.00 39.27 2.57
608 640 6.906157 AGTGTCCAATGAAATCACTGAATT 57.094 33.333 0.00 0.00 37.85 2.17
609 641 7.294017 AGTGTCCAATGAAATCACTGAATTT 57.706 32.000 0.00 0.00 37.85 1.82
610 642 7.729116 AGTGTCCAATGAAATCACTGAATTTT 58.271 30.769 0.00 0.00 37.85 1.82
611 643 8.859090 AGTGTCCAATGAAATCACTGAATTTTA 58.141 29.630 0.00 0.00 37.85 1.52
612 644 9.643693 GTGTCCAATGAAATCACTGAATTTTAT 57.356 29.630 0.00 0.00 0.00 1.40
644 676 7.502226 TCTCATTGAAAGTGAAAACCATACACT 59.498 33.333 0.00 0.00 45.02 3.55
645 677 7.424803 TCATTGAAAGTGAAAACCATACACTG 58.575 34.615 0.00 0.00 42.81 3.66
700 732 9.219603 TGAATCTTTCACGAGAAAATTGATACT 57.780 29.630 9.31 0.00 42.78 2.12
701 733 9.695884 GAATCTTTCACGAGAAAATTGATACTC 57.304 33.333 9.31 2.14 42.78 2.59
702 734 7.596749 TCTTTCACGAGAAAATTGATACTCC 57.403 36.000 9.31 0.00 42.78 3.85
703 735 6.594159 TCTTTCACGAGAAAATTGATACTCCC 59.406 38.462 9.31 0.00 42.78 4.30
704 736 5.677319 TCACGAGAAAATTGATACTCCCT 57.323 39.130 0.00 0.00 0.00 4.20
705 737 5.661458 TCACGAGAAAATTGATACTCCCTC 58.339 41.667 0.00 0.00 0.00 4.30
706 738 4.811557 CACGAGAAAATTGATACTCCCTCC 59.188 45.833 0.00 0.00 0.00 4.30
707 739 4.051922 CGAGAAAATTGATACTCCCTCCG 58.948 47.826 0.00 0.00 0.00 4.63
708 740 4.441634 CGAGAAAATTGATACTCCCTCCGT 60.442 45.833 0.00 0.00 0.00 4.69
709 741 5.024785 AGAAAATTGATACTCCCTCCGTC 57.975 43.478 0.00 0.00 0.00 4.79
710 742 3.840124 AAATTGATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
711 743 1.718280 ATTGATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
712 744 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
713 745 0.561184 TGATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
714 746 1.784593 TGATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
715 747 2.178325 TGATACTCCCTCCGTCCCATAA 59.822 50.000 0.00 0.00 0.00 1.90
716 748 3.181410 TGATACTCCCTCCGTCCCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
717 749 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
718 750 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
719 751 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
720 752 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
721 753 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
722 754 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
723 755 3.389983 CCCTCCGTCCCATAATGTAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
724 756 4.377897 CCTCCGTCCCATAATGTAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
725 757 4.049186 CTCCGTCCCATAATGTAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
726 758 3.448301 TCCGTCCCATAATGTAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
727 759 4.081531 TCCGTCCCATAATGTAAGAACGTT 60.082 41.667 0.00 0.00 38.41 3.99
728 760 4.269363 CCGTCCCATAATGTAAGAACGTTC 59.731 45.833 20.71 20.71 36.28 3.95
729 761 5.107133 CGTCCCATAATGTAAGAACGTTCT 58.893 41.667 24.93 24.93 39.74 3.01
731 763 6.753279 CGTCCCATAATGTAAGAACGTTCTTA 59.247 38.462 35.56 35.56 45.17 2.10
742 774 6.980051 AAGAACGTTCTTACATTATGGGAC 57.020 37.500 35.80 3.16 45.17 4.46
743 775 5.107133 AGAACGTTCTTACATTATGGGACG 58.893 41.667 24.93 0.00 32.55 4.79
744 776 3.788937 ACGTTCTTACATTATGGGACGG 58.211 45.455 5.92 0.00 0.00 4.79
745 777 3.448301 ACGTTCTTACATTATGGGACGGA 59.552 43.478 5.92 0.00 0.00 4.69
746 778 4.049186 CGTTCTTACATTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
747 779 4.377897 GTTCTTACATTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
748 780 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
749 781 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
750 782 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
751 783 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
752 784 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
791 823 2.226674 GCTTGGTGTGGTTTCTAGCTTC 59.773 50.000 0.00 0.00 0.00 3.86
853 886 0.317160 TTGTCTTCCGTGAGCGTGAT 59.683 50.000 0.00 0.00 36.15 3.06
939 972 4.351054 GGACCCACCCACCAGCTG 62.351 72.222 6.78 6.78 0.00 4.24
1115 1151 4.405671 GAGGGAGCAGCAGCAGCA 62.406 66.667 12.92 0.00 45.49 4.41
1116 1152 4.411981 AGGGAGCAGCAGCAGCAG 62.412 66.667 12.92 0.00 45.49 4.24
1432 1468 2.352805 CCCTCCAGCACCAGGTTC 59.647 66.667 0.00 0.00 0.00 3.62
1433 1469 2.046892 CCTCCAGCACCAGGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
1434 1470 2.743928 CTCCAGCACCAGGTTCGC 60.744 66.667 0.00 0.00 0.00 4.70
1435 1471 3.241530 TCCAGCACCAGGTTCGCT 61.242 61.111 0.00 0.00 36.10 4.93
1436 1472 2.281761 CCAGCACCAGGTTCGCTT 60.282 61.111 1.48 0.00 32.48 4.68
1437 1473 2.328099 CCAGCACCAGGTTCGCTTC 61.328 63.158 1.48 0.00 32.48 3.86
1438 1474 2.357517 AGCACCAGGTTCGCTTCG 60.358 61.111 0.00 0.00 29.87 3.79
1440 1476 2.251642 GCACCAGGTTCGCTTCGTT 61.252 57.895 0.00 0.00 0.00 3.85
1441 1477 1.860078 CACCAGGTTCGCTTCGTTC 59.140 57.895 0.00 0.00 0.00 3.95
1443 1479 1.004918 CCAGGTTCGCTTCGTTCCT 60.005 57.895 0.00 0.00 33.62 3.36
1444 1480 1.014564 CCAGGTTCGCTTCGTTCCTC 61.015 60.000 0.00 0.00 31.99 3.71
1445 1481 0.038159 CAGGTTCGCTTCGTTCCTCT 60.038 55.000 0.00 0.00 31.99 3.69
1446 1482 0.244178 AGGTTCGCTTCGTTCCTCTC 59.756 55.000 0.00 0.00 0.00 3.20
1447 1483 0.038526 GGTTCGCTTCGTTCCTCTCA 60.039 55.000 0.00 0.00 0.00 3.27
1448 1484 1.604693 GGTTCGCTTCGTTCCTCTCAA 60.605 52.381 0.00 0.00 0.00 3.02
1449 1485 2.132762 GTTCGCTTCGTTCCTCTCAAA 58.867 47.619 0.00 0.00 0.00 2.69
1450 1486 2.737252 GTTCGCTTCGTTCCTCTCAAAT 59.263 45.455 0.00 0.00 0.00 2.32
1451 1487 2.337583 TCGCTTCGTTCCTCTCAAATG 58.662 47.619 0.00 0.00 0.00 2.32
1453 1489 1.131315 GCTTCGTTCCTCTCAAATGGC 59.869 52.381 0.00 0.00 0.00 4.40
1454 1490 1.394917 CTTCGTTCCTCTCAAATGGCG 59.605 52.381 0.00 0.00 0.00 5.69
1455 1491 1.019278 TCGTTCCTCTCAAATGGCGC 61.019 55.000 0.00 0.00 0.00 6.53
1456 1492 1.021390 CGTTCCTCTCAAATGGCGCT 61.021 55.000 7.64 0.00 0.00 5.92
1457 1493 0.449388 GTTCCTCTCAAATGGCGCTG 59.551 55.000 7.64 0.00 0.00 5.18
1458 1494 0.324614 TTCCTCTCAAATGGCGCTGA 59.675 50.000 7.64 1.38 0.00 4.26
1459 1495 0.543277 TCCTCTCAAATGGCGCTGAT 59.457 50.000 7.64 0.00 0.00 2.90
1460 1496 0.661552 CCTCTCAAATGGCGCTGATG 59.338 55.000 7.64 1.75 0.00 3.07
1461 1497 0.661552 CTCTCAAATGGCGCTGATGG 59.338 55.000 7.64 0.00 0.00 3.51
1462 1498 0.035152 TCTCAAATGGCGCTGATGGT 60.035 50.000 7.64 0.00 0.00 3.55
1463 1499 1.209261 TCTCAAATGGCGCTGATGGTA 59.791 47.619 7.64 0.00 0.00 3.25
1464 1500 1.331756 CTCAAATGGCGCTGATGGTAC 59.668 52.381 7.64 0.00 0.00 3.34
1465 1501 0.381801 CAAATGGCGCTGATGGTACC 59.618 55.000 7.64 4.43 0.00 3.34
1466 1502 0.751643 AAATGGCGCTGATGGTACCC 60.752 55.000 10.07 0.00 0.00 3.69
1467 1503 2.940890 AATGGCGCTGATGGTACCCG 62.941 60.000 10.07 6.28 0.00 5.28
1468 1504 3.845259 GGCGCTGATGGTACCCGA 61.845 66.667 10.07 0.00 0.00 5.14
1469 1505 2.185867 GCGCTGATGGTACCCGAA 59.814 61.111 10.07 0.00 0.00 4.30
1470 1506 1.448893 GCGCTGATGGTACCCGAAA 60.449 57.895 10.07 0.00 0.00 3.46
1471 1507 1.022451 GCGCTGATGGTACCCGAAAA 61.022 55.000 10.07 0.00 0.00 2.29
1472 1508 0.725117 CGCTGATGGTACCCGAAAAC 59.275 55.000 10.07 0.00 0.00 2.43
1473 1509 0.725117 GCTGATGGTACCCGAAAACG 59.275 55.000 10.07 0.00 0.00 3.60
1474 1510 1.673626 GCTGATGGTACCCGAAAACGA 60.674 52.381 10.07 0.00 0.00 3.85
1475 1511 2.690786 CTGATGGTACCCGAAAACGAA 58.309 47.619 10.07 0.00 0.00 3.85
1476 1512 3.068560 CTGATGGTACCCGAAAACGAAA 58.931 45.455 10.07 0.00 0.00 3.46
1477 1513 3.474600 TGATGGTACCCGAAAACGAAAA 58.525 40.909 10.07 0.00 0.00 2.29
1478 1514 3.250521 TGATGGTACCCGAAAACGAAAAC 59.749 43.478 10.07 0.00 0.00 2.43
1479 1515 1.596727 TGGTACCCGAAAACGAAAACG 59.403 47.619 10.07 0.00 0.00 3.60
1480 1516 1.660052 GGTACCCGAAAACGAAAACGC 60.660 52.381 0.00 0.00 0.00 4.84
1481 1517 1.004079 GTACCCGAAAACGAAAACGCA 60.004 47.619 0.00 0.00 0.00 5.24
1482 1518 0.450983 ACCCGAAAACGAAAACGCAA 59.549 45.000 0.00 0.00 0.00 4.85
1506 1551 0.738389 AAAAACTGTGCTCACACCCG 59.262 50.000 0.00 0.00 46.86 5.28
1507 1552 1.101049 AAAACTGTGCTCACACCCGG 61.101 55.000 0.00 0.00 46.86 5.73
1508 1553 1.978455 AAACTGTGCTCACACCCGGA 61.978 55.000 0.73 0.00 46.86 5.14
1509 1554 2.357517 CTGTGCTCACACCCGGAC 60.358 66.667 0.73 0.00 46.86 4.79
1542 1615 4.154347 CAGGGCCAGCTCTCCGTC 62.154 72.222 6.18 0.00 0.00 4.79
1545 1618 2.442272 GGCCAGCTCTCCGTCCTA 60.442 66.667 0.00 0.00 0.00 2.94
1680 1753 2.163010 GGTGAACTACGACGATCTTCCA 59.837 50.000 0.00 0.00 0.00 3.53
1846 1919 7.041984 TGTGAAAACACGTGTAATTGCATAGTA 60.042 33.333 23.69 4.29 0.00 1.82
1905 1978 3.365364 GGATTATGCGGTGATGCTTAAGC 60.365 47.826 20.84 20.84 39.04 3.09
1989 2062 6.067217 AGTGTTACAATCCTTAGGCAAGAT 57.933 37.500 0.00 0.00 33.20 2.40
2006 2079 6.269307 AGGCAAGATATACTTAATACACGGGT 59.731 38.462 0.00 0.00 37.03 5.28
2009 2082 7.525029 GCAAGATATACTTAATACACGGGTCCT 60.525 40.741 0.00 0.00 37.03 3.85
2012 2085 5.786264 ATACTTAATACACGGGTCCTCTG 57.214 43.478 0.00 0.00 0.00 3.35
2013 2086 2.167900 ACTTAATACACGGGTCCTCTGC 59.832 50.000 0.00 0.00 0.00 4.26
2015 2088 1.956629 AATACACGGGTCCTCTGCCG 61.957 60.000 0.00 0.00 0.00 5.69
2017 2090 4.135153 CACGGGTCCTCTGCCGAG 62.135 72.222 0.00 0.00 37.01 4.63
2021 2094 4.459089 GGTCCTCTGCCGAGCCAC 62.459 72.222 0.00 0.00 35.90 5.01
2025 2098 2.031012 CTCTGCCGAGCCACACAA 59.969 61.111 0.00 0.00 0.00 3.33
2026 2099 1.376424 CTCTGCCGAGCCACACAAT 60.376 57.895 0.00 0.00 0.00 2.71
2027 2100 0.957395 CTCTGCCGAGCCACACAATT 60.957 55.000 0.00 0.00 0.00 2.32
2031 2104 1.094785 GCCGAGCCACACAATTGTAT 58.905 50.000 11.53 0.00 33.30 2.29
2035 2108 3.525537 CGAGCCACACAATTGTATCTCT 58.474 45.455 11.53 6.54 33.95 3.10
2036 2109 4.441495 CCGAGCCACACAATTGTATCTCTA 60.441 45.833 11.53 0.00 33.95 2.43
2037 2110 5.109210 CGAGCCACACAATTGTATCTCTAA 58.891 41.667 11.53 0.00 33.95 2.10
2038 2111 5.233050 CGAGCCACACAATTGTATCTCTAAG 59.767 44.000 11.53 0.00 33.95 2.18
2039 2112 4.878397 AGCCACACAATTGTATCTCTAAGC 59.122 41.667 11.53 6.14 33.30 3.09
2042 2115 5.233050 CCACACAATTGTATCTCTAAGCGAG 59.767 44.000 11.53 0.00 36.29 5.03
2082 2158 4.601019 GCAATCTGCAACGCTATTACATT 58.399 39.130 0.00 0.00 44.26 2.71
2085 2161 6.857964 GCAATCTGCAACGCTATTACATTTAT 59.142 34.615 0.00 0.00 44.26 1.40
2095 2171 9.988350 AACGCTATTACATTTATGAAGTTTCTG 57.012 29.630 0.00 0.00 0.00 3.02
2096 2172 8.612619 ACGCTATTACATTTATGAAGTTTCTGG 58.387 33.333 0.00 0.00 0.00 3.86
2097 2173 8.070171 CGCTATTACATTTATGAAGTTTCTGGG 58.930 37.037 0.00 0.00 0.00 4.45
2098 2174 8.352942 GCTATTACATTTATGAAGTTTCTGGGG 58.647 37.037 0.00 0.00 0.00 4.96
2102 2178 7.174107 ACATTTATGAAGTTTCTGGGGAATG 57.826 36.000 0.00 0.00 0.00 2.67
2103 2179 6.155049 ACATTTATGAAGTTTCTGGGGAATGG 59.845 38.462 0.00 0.00 0.00 3.16
2106 2182 3.496331 TGAAGTTTCTGGGGAATGGAAC 58.504 45.455 0.00 0.00 0.00 3.62
2123 2199 5.471556 TGGAACACTCTATCGGTTGTAAA 57.528 39.130 0.00 0.00 0.00 2.01
2124 2200 6.045072 TGGAACACTCTATCGGTTGTAAAT 57.955 37.500 0.00 0.00 0.00 1.40
2159 2235 6.819649 TCAACTACTAAATGACCATAAACCGG 59.180 38.462 0.00 0.00 0.00 5.28
2178 2254 6.696441 ACCGGTCTATCTAAACTAGAACTG 57.304 41.667 0.00 0.00 38.50 3.16
2179 2255 5.593502 ACCGGTCTATCTAAACTAGAACTGG 59.406 44.000 0.00 9.08 38.50 4.00
2183 2259 7.916450 CGGTCTATCTAAACTAGAACTGGAAAG 59.084 40.741 0.00 0.00 38.50 2.62
2197 2273 8.729805 AGAACTGGAAAGATAAGATAAAGCAG 57.270 34.615 0.00 0.00 0.00 4.24
2198 2274 8.325046 AGAACTGGAAAGATAAGATAAAGCAGT 58.675 33.333 0.00 0.00 0.00 4.40
2199 2275 8.499403 AACTGGAAAGATAAGATAAAGCAGTC 57.501 34.615 0.00 0.00 0.00 3.51
2200 2276 6.758886 ACTGGAAAGATAAGATAAAGCAGTCG 59.241 38.462 0.00 0.00 0.00 4.18
2223 2299 5.420409 GAAGAATCGGACTGAACCATAACT 58.580 41.667 0.00 0.00 0.00 2.24
2224 2300 4.759782 AGAATCGGACTGAACCATAACTG 58.240 43.478 0.00 0.00 0.00 3.16
2239 2331 0.674895 AACTGGGAGAAGCGTCATGC 60.675 55.000 1.61 0.00 46.98 4.06
2255 2347 3.437741 GTCATGCCGATCATCAATGCATA 59.562 43.478 0.00 0.00 40.46 3.14
2263 2355 6.543736 CCGATCATCAATGCATAAATCTCTG 58.456 40.000 0.00 0.00 0.00 3.35
2272 2364 7.825761 TCAATGCATAAATCTCTGTCTCAAGAA 59.174 33.333 0.00 0.00 0.00 2.52
2275 2367 5.578727 GCATAAATCTCTGTCTCAAGAACGT 59.421 40.000 0.00 0.00 0.00 3.99
2283 2375 1.789464 GTCTCAAGAACGTCACTGCAG 59.211 52.381 13.48 13.48 0.00 4.41
2294 2386 6.482308 AGAACGTCACTGCAGTTAAATAAGTT 59.518 34.615 18.94 15.50 0.00 2.66
2296 2388 4.846137 CGTCACTGCAGTTAAATAAGTTGC 59.154 41.667 18.94 0.00 0.00 4.17
2303 2395 5.577554 TGCAGTTAAATAAGTTGCGATACGA 59.422 36.000 0.00 0.00 0.00 3.43
2317 2409 4.504097 TGCGATACGATGAGAAAATGACTG 59.496 41.667 0.00 0.00 0.00 3.51
2320 2412 6.074088 GCGATACGATGAGAAAATGACTGAAT 60.074 38.462 0.00 0.00 0.00 2.57
2321 2413 7.497404 CGATACGATGAGAAAATGACTGAATC 58.503 38.462 0.00 0.00 0.00 2.52
2322 2414 7.168135 CGATACGATGAGAAAATGACTGAATCA 59.832 37.037 0.00 0.00 43.13 2.57
2333 2425 0.992072 ACTGAATCATCGCGTTGTCG 59.008 50.000 16.21 7.33 40.37 4.35
2340 2432 1.133598 TCATCGCGTTGTCGTAGGATT 59.866 47.619 16.21 0.00 39.49 3.01
2343 2435 4.213906 TCATCGCGTTGTCGTAGGATTATA 59.786 41.667 16.21 0.00 39.49 0.98
2349 2441 4.741676 CGTTGTCGTAGGATTATACCAACC 59.258 45.833 8.07 0.00 30.42 3.77
2355 2447 1.232621 GGATTATACCAACCGCCGCC 61.233 60.000 0.00 0.00 0.00 6.13
2369 2461 3.274586 CGCCGTGCCATCATCCTG 61.275 66.667 0.00 0.00 0.00 3.86
2370 2462 2.903855 GCCGTGCCATCATCCTGG 60.904 66.667 0.00 0.00 39.45 4.45
2371 2463 2.910360 CCGTGCCATCATCCTGGA 59.090 61.111 0.00 0.00 38.69 3.86
2372 2464 1.453235 CCGTGCCATCATCCTGGAT 59.547 57.895 2.57 2.57 38.69 3.41
2373 2465 0.604780 CCGTGCCATCATCCTGGATC 60.605 60.000 6.13 0.00 38.69 3.36
2374 2466 0.604780 CGTGCCATCATCCTGGATCC 60.605 60.000 6.13 4.20 38.69 3.36
2375 2467 0.475475 GTGCCATCATCCTGGATCCA 59.525 55.000 15.27 15.27 38.69 3.41
2376 2468 1.075050 GTGCCATCATCCTGGATCCAT 59.925 52.381 16.63 0.00 38.69 3.41
2377 2469 1.353358 TGCCATCATCCTGGATCCATC 59.647 52.381 16.63 0.00 38.69 3.51
2378 2470 1.634459 GCCATCATCCTGGATCCATCT 59.366 52.381 16.63 0.00 38.69 2.90
2379 2471 2.842496 GCCATCATCCTGGATCCATCTA 59.158 50.000 16.63 3.95 38.69 1.98
2380 2472 3.370315 GCCATCATCCTGGATCCATCTAC 60.370 52.174 16.63 0.00 38.69 2.59
2381 2473 4.102598 CCATCATCCTGGATCCATCTACT 58.897 47.826 16.63 0.00 38.69 2.57
2382 2474 4.081031 CCATCATCCTGGATCCATCTACTG 60.081 50.000 16.63 9.00 38.69 2.74
2383 2475 4.475919 TCATCCTGGATCCATCTACTGA 57.524 45.455 16.63 11.14 0.00 3.41
2384 2476 4.819610 TCATCCTGGATCCATCTACTGAA 58.180 43.478 16.63 0.00 0.00 3.02
2385 2477 5.218959 TCATCCTGGATCCATCTACTGAAA 58.781 41.667 16.63 0.00 0.00 2.69
2386 2478 5.306419 TCATCCTGGATCCATCTACTGAAAG 59.694 44.000 16.63 0.00 42.29 2.62
2387 2479 3.389329 TCCTGGATCCATCTACTGAAAGC 59.611 47.826 16.63 0.00 37.60 3.51
2388 2480 3.135348 CCTGGATCCATCTACTGAAAGCA 59.865 47.826 16.63 0.00 37.60 3.91
2389 2481 4.125703 CTGGATCCATCTACTGAAAGCAC 58.874 47.826 16.63 0.00 37.60 4.40
2390 2482 3.519107 TGGATCCATCTACTGAAAGCACA 59.481 43.478 11.44 0.00 37.60 4.57
2391 2483 4.125703 GGATCCATCTACTGAAAGCACAG 58.874 47.826 6.95 0.00 42.78 3.66
2393 2485 4.193826 TCCATCTACTGAAAGCACAGTC 57.806 45.455 12.93 0.00 46.36 3.51
2394 2486 3.578282 TCCATCTACTGAAAGCACAGTCA 59.422 43.478 12.93 4.38 46.36 3.41
2395 2487 4.223700 TCCATCTACTGAAAGCACAGTCAT 59.776 41.667 12.93 6.08 46.36 3.06
2396 2488 5.422012 TCCATCTACTGAAAGCACAGTCATA 59.578 40.000 12.93 3.44 46.36 2.15
2397 2489 6.098838 TCCATCTACTGAAAGCACAGTCATAT 59.901 38.462 12.93 5.15 46.36 1.78
2398 2490 6.765036 CCATCTACTGAAAGCACAGTCATATT 59.235 38.462 12.93 0.00 46.36 1.28
2399 2491 7.254692 CCATCTACTGAAAGCACAGTCATATTG 60.255 40.741 12.93 7.05 46.36 1.90
2400 2492 4.691860 ACTGAAAGCACAGTCATATTGC 57.308 40.909 5.60 0.00 46.36 3.56
2401 2493 4.074259 ACTGAAAGCACAGTCATATTGCA 58.926 39.130 5.60 0.00 46.36 4.08
2402 2494 4.703575 ACTGAAAGCACAGTCATATTGCAT 59.296 37.500 5.60 0.00 46.36 3.96
2403 2495 4.989044 TGAAAGCACAGTCATATTGCATG 58.011 39.130 0.00 0.00 38.81 4.06
2404 2496 4.142337 TGAAAGCACAGTCATATTGCATGG 60.142 41.667 0.00 0.00 38.81 3.66
2405 2497 3.286329 AGCACAGTCATATTGCATGGA 57.714 42.857 0.00 0.00 38.81 3.41
2406 2498 3.211865 AGCACAGTCATATTGCATGGAG 58.788 45.455 0.00 0.00 38.81 3.86
2407 2499 2.292569 GCACAGTCATATTGCATGGAGG 59.707 50.000 0.00 0.00 36.22 4.30
2408 2500 3.548770 CACAGTCATATTGCATGGAGGT 58.451 45.455 0.00 0.00 0.00 3.85
2409 2501 3.314357 CACAGTCATATTGCATGGAGGTG 59.686 47.826 0.00 0.00 0.00 4.00
2410 2502 2.292569 CAGTCATATTGCATGGAGGTGC 59.707 50.000 0.00 0.00 45.25 5.01
2416 2508 2.677524 GCATGGAGGTGCAAGCCA 60.678 61.111 5.97 5.97 44.43 4.75
2417 2509 2.277591 GCATGGAGGTGCAAGCCAA 61.278 57.895 7.43 0.00 44.43 4.52
2418 2510 1.888018 CATGGAGGTGCAAGCCAAG 59.112 57.895 7.43 0.36 34.95 3.61
2419 2511 1.304713 ATGGAGGTGCAAGCCAAGG 60.305 57.895 7.43 0.00 34.95 3.61
2420 2512 2.085343 ATGGAGGTGCAAGCCAAGGT 62.085 55.000 7.43 0.00 34.95 3.50
2421 2513 1.378762 GGAGGTGCAAGCCAAGGTA 59.621 57.895 0.00 0.00 32.25 3.08
2422 2514 0.251165 GGAGGTGCAAGCCAAGGTAA 60.251 55.000 0.00 0.00 32.25 2.85
2423 2515 1.616159 GAGGTGCAAGCCAAGGTAAA 58.384 50.000 0.00 0.00 32.25 2.01
2424 2516 1.960689 GAGGTGCAAGCCAAGGTAAAA 59.039 47.619 0.00 0.00 32.25 1.52
2425 2517 1.686587 AGGTGCAAGCCAAGGTAAAAC 59.313 47.619 0.00 0.00 32.25 2.43
2426 2518 1.686587 GGTGCAAGCCAAGGTAAAACT 59.313 47.619 0.00 0.00 0.00 2.66
2427 2519 2.102420 GGTGCAAGCCAAGGTAAAACTT 59.898 45.455 0.00 0.00 0.00 2.66
2428 2520 3.319689 GGTGCAAGCCAAGGTAAAACTTA 59.680 43.478 0.00 0.00 0.00 2.24
2429 2521 4.546570 GTGCAAGCCAAGGTAAAACTTAG 58.453 43.478 0.00 0.00 0.00 2.18
2430 2522 3.572255 TGCAAGCCAAGGTAAAACTTAGG 59.428 43.478 0.00 0.00 0.00 2.69
2431 2523 3.056821 GCAAGCCAAGGTAAAACTTAGGG 60.057 47.826 0.00 0.00 0.00 3.53
2432 2524 2.803956 AGCCAAGGTAAAACTTAGGGC 58.196 47.619 1.76 1.76 38.90 5.19
2433 2525 2.109304 AGCCAAGGTAAAACTTAGGGCA 59.891 45.455 10.68 0.00 40.26 5.36
2434 2526 3.096852 GCCAAGGTAAAACTTAGGGCAT 58.903 45.455 4.65 0.00 38.63 4.40
2435 2527 4.017867 AGCCAAGGTAAAACTTAGGGCATA 60.018 41.667 10.68 0.00 40.26 3.14
2436 2528 4.097437 GCCAAGGTAAAACTTAGGGCATAC 59.903 45.833 4.65 0.00 38.63 2.39
2437 2529 4.334481 CCAAGGTAAAACTTAGGGCATACG 59.666 45.833 0.00 0.00 0.00 3.06
2438 2530 3.538591 AGGTAAAACTTAGGGCATACGC 58.461 45.455 0.00 0.00 37.44 4.42
2439 2531 3.199289 AGGTAAAACTTAGGGCATACGCT 59.801 43.478 0.00 0.00 42.59 5.07
2440 2532 3.311596 GGTAAAACTTAGGGCATACGCTG 59.688 47.826 0.00 0.00 39.80 5.18
2441 2533 3.343941 AAAACTTAGGGCATACGCTGA 57.656 42.857 0.00 0.00 39.80 4.26
2442 2534 2.604046 AACTTAGGGCATACGCTGAG 57.396 50.000 0.73 0.73 44.94 3.35
2443 2535 1.776662 ACTTAGGGCATACGCTGAGA 58.223 50.000 8.57 0.00 42.91 3.27
2444 2536 1.683917 ACTTAGGGCATACGCTGAGAG 59.316 52.381 8.57 0.00 42.91 3.20
2445 2537 1.957177 CTTAGGGCATACGCTGAGAGA 59.043 52.381 0.00 0.00 42.91 3.10
2446 2538 2.067365 TAGGGCATACGCTGAGAGAA 57.933 50.000 0.00 0.00 39.80 2.87
2447 2539 0.749649 AGGGCATACGCTGAGAGAAG 59.250 55.000 0.00 0.00 37.75 2.85
2448 2540 0.461961 GGGCATACGCTGAGAGAAGT 59.538 55.000 0.00 0.00 38.60 3.01
2449 2541 1.565305 GGCATACGCTGAGAGAAGTG 58.435 55.000 0.00 0.00 38.60 3.16
2450 2542 1.134965 GGCATACGCTGAGAGAAGTGT 60.135 52.381 0.00 0.00 43.20 3.55
2451 2543 1.923204 GCATACGCTGAGAGAAGTGTG 59.077 52.381 0.83 0.00 40.96 3.82
2452 2544 2.672478 GCATACGCTGAGAGAAGTGTGT 60.672 50.000 0.83 0.00 40.96 3.72
2453 2545 2.706555 TACGCTGAGAGAAGTGTGTG 57.293 50.000 0.83 0.00 40.96 3.82
2454 2546 0.032678 ACGCTGAGAGAAGTGTGTGG 59.967 55.000 0.00 0.00 39.40 4.17
2455 2547 0.315251 CGCTGAGAGAAGTGTGTGGA 59.685 55.000 0.00 0.00 0.00 4.02
2456 2548 1.067283 CGCTGAGAGAAGTGTGTGGAT 60.067 52.381 0.00 0.00 0.00 3.41
2457 2549 2.344950 GCTGAGAGAAGTGTGTGGATG 58.655 52.381 0.00 0.00 0.00 3.51
2458 2550 2.028658 GCTGAGAGAAGTGTGTGGATGA 60.029 50.000 0.00 0.00 0.00 2.92
2459 2551 3.555795 GCTGAGAGAAGTGTGTGGATGAA 60.556 47.826 0.00 0.00 0.00 2.57
2460 2552 3.993081 CTGAGAGAAGTGTGTGGATGAAC 59.007 47.826 0.00 0.00 0.00 3.18
2461 2553 3.244215 TGAGAGAAGTGTGTGGATGAACC 60.244 47.826 0.00 0.00 39.54 3.62
2462 2554 2.039084 AGAGAAGTGTGTGGATGAACCC 59.961 50.000 0.00 0.00 38.00 4.11
2463 2555 1.774254 AGAAGTGTGTGGATGAACCCA 59.226 47.619 0.00 0.00 38.00 4.51
2464 2556 2.376518 AGAAGTGTGTGGATGAACCCAT 59.623 45.455 0.00 0.00 38.66 4.00
2465 2557 2.205022 AGTGTGTGGATGAACCCATG 57.795 50.000 0.00 0.00 38.66 3.66
2466 2558 1.704628 AGTGTGTGGATGAACCCATGA 59.295 47.619 0.00 0.00 38.66 3.07
2467 2559 2.086869 GTGTGTGGATGAACCCATGAG 58.913 52.381 0.00 0.00 38.66 2.90
2468 2560 1.098050 GTGTGGATGAACCCATGAGC 58.902 55.000 0.00 0.00 38.66 4.26
2469 2561 0.697658 TGTGGATGAACCCATGAGCA 59.302 50.000 0.00 0.00 38.66 4.26
2470 2562 1.098050 GTGGATGAACCCATGAGCAC 58.902 55.000 0.00 0.00 38.66 4.40
2471 2563 0.697658 TGGATGAACCCATGAGCACA 59.302 50.000 0.00 0.00 38.00 4.57
2472 2564 1.285667 TGGATGAACCCATGAGCACAT 59.714 47.619 0.00 0.00 38.00 3.21
2482 2574 2.592102 ATGAGCACATGAACCCAGTT 57.408 45.000 0.00 0.00 35.21 3.16
2483 2575 2.363306 TGAGCACATGAACCCAGTTT 57.637 45.000 0.00 0.00 0.00 2.66
2484 2576 2.665165 TGAGCACATGAACCCAGTTTT 58.335 42.857 0.00 0.00 0.00 2.43
2485 2577 3.826524 TGAGCACATGAACCCAGTTTTA 58.173 40.909 0.00 0.00 0.00 1.52
2486 2578 4.211125 TGAGCACATGAACCCAGTTTTAA 58.789 39.130 0.00 0.00 0.00 1.52
2487 2579 4.646945 TGAGCACATGAACCCAGTTTTAAA 59.353 37.500 0.00 0.00 0.00 1.52
2488 2580 5.127845 TGAGCACATGAACCCAGTTTTAAAA 59.872 36.000 0.00 0.00 0.00 1.52
2489 2581 5.983540 AGCACATGAACCCAGTTTTAAAAA 58.016 33.333 1.31 0.00 0.00 1.94
2490 2582 5.815222 AGCACATGAACCCAGTTTTAAAAAC 59.185 36.000 1.31 0.00 0.00 2.43
2491 2583 5.815222 GCACATGAACCCAGTTTTAAAAACT 59.185 36.000 1.31 0.00 0.00 2.66
2492 2584 6.315144 GCACATGAACCCAGTTTTAAAAACTT 59.685 34.615 1.31 0.00 0.00 2.66
2493 2585 7.492994 GCACATGAACCCAGTTTTAAAAACTTA 59.507 33.333 1.31 0.00 0.00 2.24
2494 2586 9.541143 CACATGAACCCAGTTTTAAAAACTTAT 57.459 29.630 1.31 0.00 0.00 1.73
2542 2634 7.426929 AAAAGTCTCACACATACATCTTCAC 57.573 36.000 0.00 0.00 0.00 3.18
2543 2635 5.728637 AGTCTCACACATACATCTTCACA 57.271 39.130 0.00 0.00 0.00 3.58
2544 2636 6.291648 AGTCTCACACATACATCTTCACAT 57.708 37.500 0.00 0.00 0.00 3.21
2545 2637 6.705302 AGTCTCACACATACATCTTCACATT 58.295 36.000 0.00 0.00 0.00 2.71
2546 2638 6.815641 AGTCTCACACATACATCTTCACATTC 59.184 38.462 0.00 0.00 0.00 2.67
2547 2639 6.815641 GTCTCACACATACATCTTCACATTCT 59.184 38.462 0.00 0.00 0.00 2.40
2548 2640 7.976175 GTCTCACACATACATCTTCACATTCTA 59.024 37.037 0.00 0.00 0.00 2.10
2549 2641 8.699130 TCTCACACATACATCTTCACATTCTAT 58.301 33.333 0.00 0.00 0.00 1.98
2550 2642 8.652810 TCACACATACATCTTCACATTCTATG 57.347 34.615 0.00 0.00 0.00 2.23
2551 2643 8.260114 TCACACATACATCTTCACATTCTATGT 58.740 33.333 0.00 0.00 46.22 2.29
2561 2653 3.610040 ACATTCTATGTGCACGGAGAA 57.390 42.857 26.35 26.35 43.01 2.87
2562 2654 3.937814 ACATTCTATGTGCACGGAGAAA 58.062 40.909 27.32 16.15 43.01 2.52
2563 2655 3.935203 ACATTCTATGTGCACGGAGAAAG 59.065 43.478 27.32 25.29 43.01 2.62
2564 2656 3.678056 TTCTATGTGCACGGAGAAAGT 57.322 42.857 23.64 2.94 0.00 2.66
2565 2657 3.678056 TCTATGTGCACGGAGAAAGTT 57.322 42.857 15.94 0.00 0.00 2.66
2566 2658 4.002906 TCTATGTGCACGGAGAAAGTTT 57.997 40.909 15.94 0.00 0.00 2.66
2567 2659 3.994392 TCTATGTGCACGGAGAAAGTTTC 59.006 43.478 15.94 7.57 0.00 2.78
2568 2660 2.031258 TGTGCACGGAGAAAGTTTCA 57.969 45.000 17.65 0.00 0.00 2.69
2569 2661 1.668751 TGTGCACGGAGAAAGTTTCAC 59.331 47.619 17.65 11.15 0.00 3.18
2570 2662 0.934496 TGCACGGAGAAAGTTTCACG 59.066 50.000 22.86 22.86 37.98 4.35
2571 2663 0.234884 GCACGGAGAAAGTTTCACGG 59.765 55.000 25.95 21.20 36.87 4.94
2572 2664 1.860676 CACGGAGAAAGTTTCACGGA 58.139 50.000 25.95 0.00 36.87 4.69
2573 2665 2.206750 CACGGAGAAAGTTTCACGGAA 58.793 47.619 25.95 0.00 36.87 4.30
2574 2666 2.610374 CACGGAGAAAGTTTCACGGAAA 59.390 45.455 25.95 0.00 36.87 3.13
2575 2667 3.064271 CACGGAGAAAGTTTCACGGAAAA 59.936 43.478 25.95 0.00 36.87 2.29
2576 2668 3.690628 ACGGAGAAAGTTTCACGGAAAAA 59.309 39.130 25.95 0.00 36.87 1.94
2577 2669 4.337274 ACGGAGAAAGTTTCACGGAAAAAT 59.663 37.500 25.95 9.96 36.87 1.82
2578 2670 5.528320 ACGGAGAAAGTTTCACGGAAAAATA 59.472 36.000 25.95 0.00 36.87 1.40
2579 2671 6.038492 ACGGAGAAAGTTTCACGGAAAAATAA 59.962 34.615 25.95 0.00 36.87 1.40
2580 2672 6.358822 CGGAGAAAGTTTCACGGAAAAATAAC 59.641 38.462 17.65 0.00 33.14 1.89
2581 2673 7.423199 GGAGAAAGTTTCACGGAAAAATAACT 58.577 34.615 17.65 0.00 33.14 2.24
2582 2674 7.919091 GGAGAAAGTTTCACGGAAAAATAACTT 59.081 33.333 17.65 0.00 37.41 2.66
2583 2675 8.851960 AGAAAGTTTCACGGAAAAATAACTTC 57.148 30.769 17.65 0.00 35.46 3.01
2584 2676 8.683615 AGAAAGTTTCACGGAAAAATAACTTCT 58.316 29.630 17.65 0.00 35.46 2.85
2585 2677 9.297586 GAAAGTTTCACGGAAAAATAACTTCTT 57.702 29.630 10.81 0.00 35.46 2.52
2586 2678 8.628882 AAGTTTCACGGAAAAATAACTTCTTG 57.371 30.769 0.00 0.00 33.14 3.02
2587 2679 7.200455 AGTTTCACGGAAAAATAACTTCTTGG 58.800 34.615 1.37 0.00 33.14 3.61
2588 2680 6.702716 TTCACGGAAAAATAACTTCTTGGT 57.297 33.333 0.00 0.00 0.00 3.67
2589 2681 6.308371 TCACGGAAAAATAACTTCTTGGTC 57.692 37.500 0.00 0.00 0.00 4.02
2590 2682 5.049954 TCACGGAAAAATAACTTCTTGGTCG 60.050 40.000 0.00 0.00 0.00 4.79
2591 2683 4.214758 ACGGAAAAATAACTTCTTGGTCGG 59.785 41.667 0.00 0.00 0.00 4.79
2592 2684 4.482386 GGAAAAATAACTTCTTGGTCGGC 58.518 43.478 0.00 0.00 0.00 5.54
2593 2685 4.482386 GAAAAATAACTTCTTGGTCGGCC 58.518 43.478 0.00 0.00 0.00 6.13
2594 2686 2.124277 AATAACTTCTTGGTCGGCCC 57.876 50.000 2.12 0.00 0.00 5.80
2595 2687 0.107848 ATAACTTCTTGGTCGGCCCG 60.108 55.000 2.12 0.00 35.15 6.13
2596 2688 1.474332 TAACTTCTTGGTCGGCCCGT 61.474 55.000 2.12 0.00 35.15 5.28
2597 2689 2.742372 CTTCTTGGTCGGCCCGTG 60.742 66.667 2.12 0.00 35.15 4.94
2601 2693 4.877619 TTGGTCGGCCCGTGCAAA 62.878 61.111 2.12 0.00 40.13 3.68
2602 2694 4.877619 TGGTCGGCCCGTGCAAAA 62.878 61.111 2.12 0.00 40.13 2.44
2603 2695 3.597728 GGTCGGCCCGTGCAAAAA 61.598 61.111 1.63 0.00 40.13 1.94
2636 2728 9.995003 AAAATTTGTTGTGGAATGCTATTTAGA 57.005 25.926 0.00 0.00 0.00 2.10
2637 2729 9.995003 AAATTTGTTGTGGAATGCTATTTAGAA 57.005 25.926 0.00 0.00 0.00 2.10
2638 2730 9.643693 AATTTGTTGTGGAATGCTATTTAGAAG 57.356 29.630 0.00 0.00 0.00 2.85
2639 2731 6.194796 TGTTGTGGAATGCTATTTAGAAGC 57.805 37.500 0.00 0.00 40.50 3.86
2651 2743 7.885297 TGCTATTTAGAAGCACTGAAATTTGT 58.115 30.769 0.00 0.00 44.78 2.83
2652 2744 8.023128 TGCTATTTAGAAGCACTGAAATTTGTC 58.977 33.333 0.00 0.00 44.78 3.18
2653 2745 8.239998 GCTATTTAGAAGCACTGAAATTTGTCT 58.760 33.333 0.00 0.00 39.83 3.41
2656 2748 9.822185 ATTTAGAAGCACTGAAATTTGTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
2657 2749 9.651913 TTTAGAAGCACTGAAATTTGTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
2679 2771 5.913137 TTGAGGAGCAAAACAAAAAGAGA 57.087 34.783 0.00 0.00 32.46 3.10
2680 2772 6.469782 TTGAGGAGCAAAACAAAAAGAGAT 57.530 33.333 0.00 0.00 32.46 2.75
2681 2773 6.469782 TGAGGAGCAAAACAAAAAGAGATT 57.530 33.333 0.00 0.00 0.00 2.40
2682 2774 6.877236 TGAGGAGCAAAACAAAAAGAGATTT 58.123 32.000 0.00 0.00 0.00 2.17
2683 2775 7.330262 TGAGGAGCAAAACAAAAAGAGATTTT 58.670 30.769 0.00 0.00 41.93 1.82
2684 2776 7.492344 TGAGGAGCAAAACAAAAAGAGATTTTC 59.508 33.333 0.00 0.00 39.20 2.29
2685 2777 7.559486 AGGAGCAAAACAAAAAGAGATTTTCT 58.441 30.769 0.00 0.00 39.20 2.52
2686 2778 7.708322 AGGAGCAAAACAAAAAGAGATTTTCTC 59.292 33.333 0.00 0.00 43.70 2.87
2687 2779 7.492344 GGAGCAAAACAAAAAGAGATTTTCTCA 59.508 33.333 7.24 0.00 45.73 3.27
2688 2780 8.189709 AGCAAAACAAAAAGAGATTTTCTCAC 57.810 30.769 7.24 0.00 45.73 3.51
2689 2781 7.818930 AGCAAAACAAAAAGAGATTTTCTCACA 59.181 29.630 7.24 0.00 45.73 3.58
2690 2782 8.442384 GCAAAACAAAAAGAGATTTTCTCACAA 58.558 29.630 7.24 0.00 45.73 3.33
2693 2785 9.874205 AAACAAAAAGAGATTTTCTCACAATCA 57.126 25.926 7.24 0.00 45.73 2.57
2706 2798 7.928908 TTCTCACAATCATAAAACTTTGTGC 57.071 32.000 9.20 0.00 45.30 4.57
2707 2799 6.446318 TCTCACAATCATAAAACTTTGTGCC 58.554 36.000 9.20 0.00 45.30 5.01
2708 2800 5.218885 TCACAATCATAAAACTTTGTGCCG 58.781 37.500 9.20 0.00 45.30 5.69
2709 2801 3.987220 ACAATCATAAAACTTTGTGCCGC 59.013 39.130 0.00 0.00 31.45 6.53
2710 2802 2.323939 TCATAAAACTTTGTGCCGCG 57.676 45.000 0.00 0.00 30.49 6.46
2711 2803 0.707822 CATAAAACTTTGTGCCGCGC 59.292 50.000 0.00 0.00 0.00 6.86
2712 2804 0.312416 ATAAAACTTTGTGCCGCGCA 59.688 45.000 8.75 1.51 35.60 6.09
2721 2813 2.866750 TGCCGCGCACACTTATTG 59.133 55.556 8.75 0.00 31.71 1.90
2722 2814 2.576847 GCCGCGCACACTTATTGC 60.577 61.111 8.75 0.00 36.57 3.56
2723 2815 2.866750 CCGCGCACACTTATTGCA 59.133 55.556 8.75 0.00 40.20 4.08
2724 2816 1.208870 CCGCGCACACTTATTGCAA 59.791 52.632 8.75 0.00 40.20 4.08
2725 2817 0.386605 CCGCGCACACTTATTGCAAA 60.387 50.000 8.75 0.00 40.20 3.68
2726 2818 0.976963 CGCGCACACTTATTGCAAAG 59.023 50.000 8.75 0.00 40.20 2.77
2727 2819 1.399599 CGCGCACACTTATTGCAAAGA 60.400 47.619 8.75 0.00 40.20 2.52
2728 2820 2.728846 CGCGCACACTTATTGCAAAGAT 60.729 45.455 8.75 0.00 40.20 2.40
2729 2821 3.485051 CGCGCACACTTATTGCAAAGATA 60.485 43.478 8.75 0.00 40.20 1.98
2730 2822 4.601019 GCGCACACTTATTGCAAAGATAT 58.399 39.130 1.71 0.00 40.20 1.63
2731 2823 5.558083 CGCGCACACTTATTGCAAAGATATA 60.558 40.000 8.75 0.00 40.20 0.86
2732 2824 6.373779 GCGCACACTTATTGCAAAGATATAT 58.626 36.000 1.71 0.00 40.20 0.86
2733 2825 6.303970 GCGCACACTTATTGCAAAGATATATG 59.696 38.462 1.71 0.00 40.20 1.78
2734 2826 6.303970 CGCACACTTATTGCAAAGATATATGC 59.696 38.462 1.71 7.91 40.20 3.14
2809 2901 7.945033 TTTTTGAAAAGTGAGTTCATATGGC 57.055 32.000 2.13 0.00 35.03 4.40
2810 2902 5.643379 TTGAAAAGTGAGTTCATATGGCC 57.357 39.130 2.13 0.00 35.03 5.36
2811 2903 4.016444 TGAAAAGTGAGTTCATATGGCCC 58.984 43.478 0.00 0.00 30.08 5.80
2812 2904 4.263905 TGAAAAGTGAGTTCATATGGCCCT 60.264 41.667 0.00 0.00 30.08 5.19
2813 2905 3.287867 AAGTGAGTTCATATGGCCCTG 57.712 47.619 0.00 0.00 0.00 4.45
2814 2906 1.133976 AGTGAGTTCATATGGCCCTGC 60.134 52.381 0.00 0.00 0.00 4.85
2815 2907 0.179048 TGAGTTCATATGGCCCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
2816 2908 0.179045 GAGTTCATATGGCCCTGCGT 60.179 55.000 0.00 0.00 0.00 5.24
2817 2909 0.464373 AGTTCATATGGCCCTGCGTG 60.464 55.000 0.00 0.00 0.00 5.34
2818 2910 1.823470 TTCATATGGCCCTGCGTGC 60.823 57.895 0.00 0.00 0.00 5.34
2819 2911 2.516695 CATATGGCCCTGCGTGCA 60.517 61.111 0.00 0.00 0.00 4.57
2820 2912 2.203252 ATATGGCCCTGCGTGCAG 60.203 61.111 14.82 14.82 43.26 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.513692 TCTTGTAAAGTACAAACAGCGCAT 59.486 37.500 11.47 0.00 46.90 4.73
86 87 9.919416 TGAAATGAAGGAATAATAACTCATCCA 57.081 29.630 0.00 0.00 32.47 3.41
267 268 4.932200 AGTAAGAAACAAGCCTCATTCTCG 59.068 41.667 0.00 0.00 31.20 4.04
330 331 0.381801 GTGCCCAACTGACAACACAG 59.618 55.000 0.00 0.00 42.78 3.66
369 370 5.230942 ACATAAACCAGAGAAGAGACAACG 58.769 41.667 0.00 0.00 0.00 4.10
442 453 4.942761 ATGCAAACCAAGAACACTGAAT 57.057 36.364 0.00 0.00 0.00 2.57
454 465 3.495806 CCCTTTAGCCAAAATGCAAACCA 60.496 43.478 0.00 0.00 0.00 3.67
469 480 6.173339 TCTAGTGAATGTTTCAGCCCTTTAG 58.827 40.000 0.00 0.00 41.01 1.85
531 542 9.589111 TGCACTTTCAGTAATACACGATATTTA 57.411 29.630 0.00 0.00 0.00 1.40
535 546 6.034150 CGTTGCACTTTCAGTAATACACGATA 59.966 38.462 0.00 0.00 0.00 2.92
544 555 5.090083 GTCAAAACGTTGCACTTTCAGTAA 58.910 37.500 0.00 0.00 34.50 2.24
556 567 3.143807 TGCCTTTCAGTCAAAACGTTG 57.856 42.857 0.00 0.00 35.95 4.10
557 568 3.859411 TTGCCTTTCAGTCAAAACGTT 57.141 38.095 0.00 0.00 0.00 3.99
559 570 7.406799 AAATATTTGCCTTTCAGTCAAAACG 57.593 32.000 0.00 0.00 34.00 3.60
584 598 8.408043 AAATTCAGTGATTTCATTGGACACTA 57.592 30.769 0.00 0.00 39.33 2.74
611 643 9.264719 GGTTTTCACTTTCAATGAGATTTCAAT 57.735 29.630 0.00 0.00 36.78 2.57
612 644 8.256605 TGGTTTTCACTTTCAATGAGATTTCAA 58.743 29.630 0.00 0.00 36.78 2.69
613 645 7.780064 TGGTTTTCACTTTCAATGAGATTTCA 58.220 30.769 0.00 0.00 37.81 2.69
614 646 8.822652 ATGGTTTTCACTTTCAATGAGATTTC 57.177 30.769 0.00 0.00 0.00 2.17
615 647 9.696917 GTATGGTTTTCACTTTCAATGAGATTT 57.303 29.630 0.00 0.00 0.00 2.17
616 648 8.859090 TGTATGGTTTTCACTTTCAATGAGATT 58.141 29.630 0.00 0.00 0.00 2.40
617 649 8.299570 GTGTATGGTTTTCACTTTCAATGAGAT 58.700 33.333 0.00 0.00 0.00 2.75
618 650 7.502226 AGTGTATGGTTTTCACTTTCAATGAGA 59.498 33.333 0.00 0.00 39.00 3.27
623 655 6.559810 CACAGTGTATGGTTTTCACTTTCAA 58.440 36.000 0.00 0.00 39.89 2.69
629 661 2.621055 TGGCACAGTGTATGGTTTTCAC 59.379 45.455 1.61 0.00 0.00 3.18
685 717 4.051922 CGGAGGGAGTATCAATTTTCTCG 58.948 47.826 0.00 0.00 36.25 4.04
698 730 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
699 731 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
700 732 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
701 733 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
702 734 4.377897 GTTCTTACATTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
703 735 4.049186 CGTTCTTACATTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
704 736 3.448301 ACGTTCTTACATTATGGGACGGA 59.552 43.478 5.92 0.00 0.00 4.69
705 737 3.788937 ACGTTCTTACATTATGGGACGG 58.211 45.455 5.92 0.00 0.00 4.79
706 738 5.107133 AGAACGTTCTTACATTATGGGACG 58.893 41.667 24.93 0.00 32.55 4.79
707 739 6.980051 AAGAACGTTCTTACATTATGGGAC 57.020 37.500 35.80 3.16 45.17 4.46
718 750 6.753279 CGTCCCATAATGTAAGAACGTTCTTA 59.247 38.462 35.56 35.56 45.17 2.10
720 752 5.107133 CGTCCCATAATGTAAGAACGTTCT 58.893 41.667 24.93 24.93 39.74 3.01
721 753 4.269363 CCGTCCCATAATGTAAGAACGTTC 59.731 45.833 20.71 20.71 36.28 3.95
722 754 4.081531 TCCGTCCCATAATGTAAGAACGTT 60.082 41.667 0.00 0.00 38.41 3.99
723 755 3.448301 TCCGTCCCATAATGTAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
724 756 4.049186 CTCCGTCCCATAATGTAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
725 757 4.377897 CCTCCGTCCCATAATGTAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
726 758 3.389983 CCCTCCGTCCCATAATGTAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
727 759 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
728 760 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
729 761 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
730 762 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
731 763 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
732 764 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
733 765 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
734 766 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
735 767 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
736 768 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
737 769 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
738 770 0.540133 GGATCTACTCCCTCCGTCCC 60.540 65.000 0.00 0.00 38.19 4.46
739 771 0.890090 CGGATCTACTCCCTCCGTCC 60.890 65.000 2.18 0.00 45.30 4.79
740 772 2.631427 CGGATCTACTCCCTCCGTC 58.369 63.158 2.18 0.00 45.30 4.79
741 773 4.903026 CGGATCTACTCCCTCCGT 57.097 61.111 2.18 0.00 45.30 4.69
743 775 1.700739 TCTCTCGGATCTACTCCCTCC 59.299 57.143 0.00 0.00 41.49 4.30
744 776 3.181448 ACTTCTCTCGGATCTACTCCCTC 60.181 52.174 0.00 0.00 41.49 4.30
745 777 2.781174 ACTTCTCTCGGATCTACTCCCT 59.219 50.000 0.00 0.00 41.49 4.20
746 778 3.217681 ACTTCTCTCGGATCTACTCCC 57.782 52.381 0.00 0.00 41.49 4.30
747 779 4.200874 TCAACTTCTCTCGGATCTACTCC 58.799 47.826 0.00 0.00 41.07 3.85
748 780 4.261031 GCTCAACTTCTCTCGGATCTACTC 60.261 50.000 0.00 0.00 0.00 2.59
749 781 3.630312 GCTCAACTTCTCTCGGATCTACT 59.370 47.826 0.00 0.00 0.00 2.57
750 782 3.630312 AGCTCAACTTCTCTCGGATCTAC 59.370 47.826 0.00 0.00 0.00 2.59
751 783 3.892284 AGCTCAACTTCTCTCGGATCTA 58.108 45.455 0.00 0.00 0.00 1.98
752 784 2.733956 AGCTCAACTTCTCTCGGATCT 58.266 47.619 0.00 0.00 0.00 2.75
791 823 0.871163 CTGTTTGCCTTGTTGCCGTG 60.871 55.000 0.00 0.00 0.00 4.94
824 857 1.269413 ACGGAAGACAACGGTAGTGTG 60.269 52.381 0.00 0.00 0.00 3.82
825 858 1.035139 ACGGAAGACAACGGTAGTGT 58.965 50.000 0.00 0.00 0.00 3.55
826 859 1.001048 TCACGGAAGACAACGGTAGTG 60.001 52.381 0.00 0.00 0.00 2.74
939 972 1.336517 GCGAGTTTTAAAAGGGGTGGC 60.337 52.381 0.00 0.00 0.00 5.01
1432 1468 1.394917 CCATTTGAGAGGAACGAAGCG 59.605 52.381 0.00 0.00 0.00 4.68
1433 1469 1.131315 GCCATTTGAGAGGAACGAAGC 59.869 52.381 0.00 0.00 0.00 3.86
1434 1470 1.394917 CGCCATTTGAGAGGAACGAAG 59.605 52.381 0.00 0.00 0.00 3.79
1435 1471 1.438651 CGCCATTTGAGAGGAACGAA 58.561 50.000 0.00 0.00 0.00 3.85
1436 1472 1.019278 GCGCCATTTGAGAGGAACGA 61.019 55.000 0.00 0.00 0.00 3.85
1437 1473 1.021390 AGCGCCATTTGAGAGGAACG 61.021 55.000 2.29 0.00 0.00 3.95
1438 1474 0.449388 CAGCGCCATTTGAGAGGAAC 59.551 55.000 2.29 0.00 0.00 3.62
1440 1476 0.543277 ATCAGCGCCATTTGAGAGGA 59.457 50.000 2.29 0.00 0.00 3.71
1441 1477 0.661552 CATCAGCGCCATTTGAGAGG 59.338 55.000 2.29 0.00 0.00 3.69
1443 1479 0.035152 ACCATCAGCGCCATTTGAGA 60.035 50.000 2.29 0.00 0.00 3.27
1444 1480 1.331756 GTACCATCAGCGCCATTTGAG 59.668 52.381 2.29 0.00 0.00 3.02
1445 1481 1.378531 GTACCATCAGCGCCATTTGA 58.621 50.000 2.29 0.40 0.00 2.69
1446 1482 0.381801 GGTACCATCAGCGCCATTTG 59.618 55.000 7.15 0.00 0.00 2.32
1447 1483 2.793831 GGTACCATCAGCGCCATTT 58.206 52.632 7.15 0.00 0.00 2.32
1448 1484 4.559502 GGTACCATCAGCGCCATT 57.440 55.556 7.15 0.00 0.00 3.16
1455 1491 7.790451 CGTTTTCGTTTTCGGGTACCATCAG 62.790 48.000 15.35 1.80 44.22 2.90
1456 1492 6.079778 CGTTTTCGTTTTCGGGTACCATCA 62.080 45.833 15.35 0.00 44.22 3.07
1457 1493 3.665060 CGTTTTCGTTTTCGGGTACCATC 60.665 47.826 15.35 0.00 44.22 3.51
1458 1494 2.223845 CGTTTTCGTTTTCGGGTACCAT 59.776 45.455 15.35 0.00 44.22 3.55
1459 1495 1.596727 CGTTTTCGTTTTCGGGTACCA 59.403 47.619 15.35 0.00 44.22 3.25
1460 1496 1.660052 GCGTTTTCGTTTTCGGGTACC 60.660 52.381 2.17 2.17 46.34 3.34
1461 1497 1.004079 TGCGTTTTCGTTTTCGGGTAC 60.004 47.619 0.00 0.00 46.03 3.34
1462 1498 1.293924 TGCGTTTTCGTTTTCGGGTA 58.706 45.000 0.00 0.00 46.03 3.69
1463 1499 0.450983 TTGCGTTTTCGTTTTCGGGT 59.549 45.000 0.00 0.00 46.03 5.28
1464 1500 1.117234 CTTGCGTTTTCGTTTTCGGG 58.883 50.000 0.00 0.00 46.03 5.14
1465 1501 1.817609 ACTTGCGTTTTCGTTTTCGG 58.182 45.000 0.00 0.00 46.03 4.30
1466 1502 4.977414 TTTACTTGCGTTTTCGTTTTCG 57.023 36.364 0.00 0.00 46.03 3.46
1487 1523 0.738389 CGGGTGTGAGCACAGTTTTT 59.262 50.000 3.12 0.00 46.95 1.94
1488 1524 1.101049 CCGGGTGTGAGCACAGTTTT 61.101 55.000 3.12 0.00 46.95 2.43
1507 1552 2.787567 GGAGGAGCGCTACCTGGTC 61.788 68.421 26.44 14.35 37.93 4.02
1508 1553 2.760385 GGAGGAGCGCTACCTGGT 60.760 66.667 26.44 4.05 37.93 4.00
1509 1554 2.759973 TGGAGGAGCGCTACCTGG 60.760 66.667 26.44 0.00 37.93 4.45
1542 1615 2.814336 GTTGAAGAGCTGGGTTTGTAGG 59.186 50.000 0.00 0.00 0.00 3.18
1545 1618 2.301346 CAGTTGAAGAGCTGGGTTTGT 58.699 47.619 0.00 0.00 0.00 2.83
1680 1753 1.003355 CATGAAGTCCACGGCCTGT 60.003 57.895 0.00 0.00 0.00 4.00
1846 1919 6.932400 ACTTCACATCATGACATTGCAAAAAT 59.068 30.769 1.71 0.00 36.92 1.82
1860 1933 5.359009 CCTTAATGGAAGCACTTCACATCAT 59.641 40.000 12.21 3.88 41.20 2.45
1891 1964 0.924090 GACTCGCTTAAGCATCACCG 59.076 55.000 26.29 9.62 42.21 4.94
1962 2035 8.764558 TCTTGCCTAAGGATTGTAACACTATAA 58.235 33.333 0.00 0.00 34.59 0.98
1963 2036 8.313944 TCTTGCCTAAGGATTGTAACACTATA 57.686 34.615 0.00 0.00 34.59 1.31
1966 2039 5.499004 TCTTGCCTAAGGATTGTAACACT 57.501 39.130 0.00 0.00 34.59 3.55
1967 2040 8.989980 GTATATCTTGCCTAAGGATTGTAACAC 58.010 37.037 0.00 0.00 34.59 3.32
1978 2051 9.355215 CCGTGTATTAAGTATATCTTGCCTAAG 57.645 37.037 0.00 0.00 37.56 2.18
1982 2055 6.461640 ACCCGTGTATTAAGTATATCTTGCC 58.538 40.000 0.00 0.00 37.56 4.52
1989 2062 5.242393 GCAGAGGACCCGTGTATTAAGTATA 59.758 44.000 0.00 0.00 0.00 1.47
1999 2072 4.988716 TCGGCAGAGGACCCGTGT 62.989 66.667 0.00 0.00 44.63 4.49
2000 2073 4.135153 CTCGGCAGAGGACCCGTG 62.135 72.222 5.89 0.00 44.63 4.94
2006 2079 3.695606 GTGTGGCTCGGCAGAGGA 61.696 66.667 15.89 0.00 44.51 3.71
2009 2082 1.073025 AATTGTGTGGCTCGGCAGA 59.927 52.632 0.00 0.00 0.00 4.26
2012 2085 1.064060 GATACAATTGTGTGGCTCGGC 59.936 52.381 21.42 0.00 38.82 5.54
2013 2086 2.609459 GAGATACAATTGTGTGGCTCGG 59.391 50.000 21.42 0.00 38.82 4.63
2015 2088 5.007136 GCTTAGAGATACAATTGTGTGGCTC 59.993 44.000 21.42 16.52 38.82 4.70
2017 2090 4.260375 CGCTTAGAGATACAATTGTGTGGC 60.260 45.833 21.42 8.41 38.82 5.01
2036 2109 3.951979 GCAATGTATAGTTGCTCGCTT 57.048 42.857 13.06 0.00 46.34 4.68
2057 2130 3.855689 AATAGCGTTGCAGATTGCTTT 57.144 38.095 8.93 0.33 45.31 3.51
2059 2132 3.270027 TGTAATAGCGTTGCAGATTGCT 58.730 40.909 8.71 8.71 45.31 3.91
2060 2133 3.673746 TGTAATAGCGTTGCAGATTGC 57.326 42.857 0.00 0.00 45.29 3.56
2061 2134 8.069574 TCATAAATGTAATAGCGTTGCAGATTG 58.930 33.333 0.00 0.00 0.00 2.67
2071 2144 8.070171 CCCAGAAACTTCATAAATGTAATAGCG 58.930 37.037 0.00 0.00 0.00 4.26
2079 2152 6.380846 TCCATTCCCCAGAAACTTCATAAATG 59.619 38.462 0.00 0.00 35.09 2.32
2082 2158 5.528600 TCCATTCCCCAGAAACTTCATAA 57.471 39.130 0.00 0.00 35.09 1.90
2085 2161 3.117322 TGTTCCATTCCCCAGAAACTTCA 60.117 43.478 0.00 0.00 35.09 3.02
2095 2171 2.224305 CCGATAGAGTGTTCCATTCCCC 60.224 54.545 0.00 0.00 39.76 4.81
2096 2172 2.434702 ACCGATAGAGTGTTCCATTCCC 59.565 50.000 0.00 0.00 39.76 3.97
2097 2173 3.821421 ACCGATAGAGTGTTCCATTCC 57.179 47.619 0.00 0.00 39.76 3.01
2098 2174 4.504858 ACAACCGATAGAGTGTTCCATTC 58.495 43.478 0.00 0.00 39.76 2.67
2102 2178 7.763071 AGTTATTTACAACCGATAGAGTGTTCC 59.237 37.037 0.00 0.00 35.13 3.62
2103 2179 8.699283 AGTTATTTACAACCGATAGAGTGTTC 57.301 34.615 0.00 0.00 35.13 3.18
2137 2213 6.303903 ACCGGTTTATGGTCATTTAGTAGT 57.696 37.500 0.00 0.00 33.35 2.73
2156 2232 5.826737 TCCAGTTCTAGTTTAGATAGACCGG 59.173 44.000 0.00 0.00 34.22 5.28
2178 2254 7.707035 TCTTCGACTGCTTTATCTTATCTTTCC 59.293 37.037 0.00 0.00 0.00 3.13
2179 2255 8.635877 TCTTCGACTGCTTTATCTTATCTTTC 57.364 34.615 0.00 0.00 0.00 2.62
2199 2275 2.363788 TGGTTCAGTCCGATTCTTCG 57.636 50.000 0.00 0.00 45.08 3.79
2200 2276 5.292101 CAGTTATGGTTCAGTCCGATTCTTC 59.708 44.000 0.00 0.00 0.00 2.87
2208 2284 2.838202 TCTCCCAGTTATGGTTCAGTCC 59.162 50.000 0.00 0.00 46.10 3.85
2213 2289 2.280628 CGCTTCTCCCAGTTATGGTTC 58.719 52.381 0.00 0.00 46.10 3.62
2223 2299 2.268920 GGCATGACGCTTCTCCCA 59.731 61.111 0.00 0.00 41.91 4.37
2224 2300 2.650813 ATCGGCATGACGCTTCTCCC 62.651 60.000 18.42 0.00 41.91 4.30
2226 2302 0.528466 TGATCGGCATGACGCTTCTC 60.528 55.000 18.42 10.67 41.91 2.87
2227 2303 0.105593 ATGATCGGCATGACGCTTCT 59.894 50.000 18.42 0.00 41.91 2.85
2228 2304 0.510359 GATGATCGGCATGACGCTTC 59.490 55.000 18.42 16.09 41.91 3.86
2234 2326 1.970092 TGCATTGATGATCGGCATGA 58.030 45.000 0.00 0.00 37.34 3.07
2239 2331 6.148976 ACAGAGATTTATGCATTGATGATCGG 59.851 38.462 3.54 0.59 0.00 4.18
2255 2347 4.985409 GTGACGTTCTTGAGACAGAGATTT 59.015 41.667 0.00 0.00 0.00 2.17
2263 2355 1.789464 CTGCAGTGACGTTCTTGAGAC 59.211 52.381 5.25 0.00 0.00 3.36
2272 2364 5.560183 GCAACTTATTTAACTGCAGTGACGT 60.560 40.000 22.49 7.12 33.19 4.34
2275 2367 4.752604 TCGCAACTTATTTAACTGCAGTGA 59.247 37.500 22.49 10.83 33.19 3.41
2283 2375 8.057812 TCTCATCGTATCGCAACTTATTTAAC 57.942 34.615 0.00 0.00 0.00 2.01
2294 2386 4.504097 CAGTCATTTTCTCATCGTATCGCA 59.496 41.667 0.00 0.00 0.00 5.10
2296 2388 6.812481 TTCAGTCATTTTCTCATCGTATCG 57.188 37.500 0.00 0.00 0.00 2.92
2317 2409 1.517276 CCTACGACAACGCGATGATTC 59.483 52.381 23.89 10.00 43.96 2.52
2320 2412 0.736636 ATCCTACGACAACGCGATGA 59.263 50.000 23.89 0.00 43.96 2.92
2321 2413 1.556564 AATCCTACGACAACGCGATG 58.443 50.000 15.93 15.61 43.96 3.84
2322 2414 3.637998 ATAATCCTACGACAACGCGAT 57.362 42.857 15.93 0.00 43.96 4.58
2325 2417 3.968649 TGGTATAATCCTACGACAACGC 58.031 45.455 0.00 0.00 43.96 4.84
2326 2418 4.741676 GGTTGGTATAATCCTACGACAACG 59.258 45.833 0.00 0.00 45.75 4.10
2329 2421 3.243501 GCGGTTGGTATAATCCTACGACA 60.244 47.826 0.00 0.00 34.87 4.35
2333 2425 2.680577 CGGCGGTTGGTATAATCCTAC 58.319 52.381 0.00 0.00 33.68 3.18
2340 2432 3.459965 ACGGCGGCGGTTGGTATA 61.460 61.111 35.05 0.00 0.00 1.47
2355 2447 0.604780 GGATCCAGGATGATGGCACG 60.605 60.000 6.70 0.00 39.69 5.34
2369 2461 4.125703 CTGTGCTTTCAGTAGATGGATCC 58.874 47.826 4.20 4.20 0.00 3.36
2370 2462 4.764172 ACTGTGCTTTCAGTAGATGGATC 58.236 43.478 7.71 0.00 45.31 3.36
2371 2463 4.223700 TGACTGTGCTTTCAGTAGATGGAT 59.776 41.667 9.06 0.00 46.81 3.41
2372 2464 3.578282 TGACTGTGCTTTCAGTAGATGGA 59.422 43.478 9.06 0.00 46.81 3.41
2373 2465 3.930336 TGACTGTGCTTTCAGTAGATGG 58.070 45.455 9.06 0.00 46.81 3.51
2374 2466 7.628235 CAATATGACTGTGCTTTCAGTAGATG 58.372 38.462 9.06 3.38 46.81 2.90
2375 2467 6.259608 GCAATATGACTGTGCTTTCAGTAGAT 59.740 38.462 9.06 7.61 46.81 1.98
2376 2468 5.582269 GCAATATGACTGTGCTTTCAGTAGA 59.418 40.000 9.06 2.06 46.81 2.59
2377 2469 5.352293 TGCAATATGACTGTGCTTTCAGTAG 59.648 40.000 9.06 0.00 46.81 2.57
2378 2470 5.244755 TGCAATATGACTGTGCTTTCAGTA 58.755 37.500 9.06 0.00 46.81 2.74
2380 2472 4.690184 TGCAATATGACTGTGCTTTCAG 57.310 40.909 0.00 0.00 39.09 3.02
2381 2473 4.142337 CCATGCAATATGACTGTGCTTTCA 60.142 41.667 0.00 0.00 39.09 2.69
2382 2474 4.096833 TCCATGCAATATGACTGTGCTTTC 59.903 41.667 0.00 0.00 39.09 2.62
2383 2475 4.018490 TCCATGCAATATGACTGTGCTTT 58.982 39.130 0.00 0.00 39.09 3.51
2384 2476 3.623703 TCCATGCAATATGACTGTGCTT 58.376 40.909 0.00 0.00 39.09 3.91
2385 2477 3.211865 CTCCATGCAATATGACTGTGCT 58.788 45.455 0.00 0.00 39.09 4.40
2386 2478 2.292569 CCTCCATGCAATATGACTGTGC 59.707 50.000 0.00 0.00 38.78 4.57
2387 2479 3.314357 CACCTCCATGCAATATGACTGTG 59.686 47.826 0.00 0.00 0.00 3.66
2388 2480 3.548770 CACCTCCATGCAATATGACTGT 58.451 45.455 0.00 0.00 0.00 3.55
2389 2481 2.292569 GCACCTCCATGCAATATGACTG 59.707 50.000 0.00 0.00 45.39 3.51
2390 2482 2.579873 GCACCTCCATGCAATATGACT 58.420 47.619 0.00 0.00 45.39 3.41
2399 2491 2.221906 CTTGGCTTGCACCTCCATGC 62.222 60.000 2.06 0.00 46.32 4.06
2400 2492 1.601419 CCTTGGCTTGCACCTCCATG 61.601 60.000 2.06 4.78 0.00 3.66
2401 2493 1.304713 CCTTGGCTTGCACCTCCAT 60.305 57.895 2.06 0.00 0.00 3.41
2402 2494 1.422977 TACCTTGGCTTGCACCTCCA 61.423 55.000 0.00 0.00 0.00 3.86
2403 2495 0.251165 TTACCTTGGCTTGCACCTCC 60.251 55.000 0.00 0.00 0.00 4.30
2404 2496 1.616159 TTTACCTTGGCTTGCACCTC 58.384 50.000 0.00 0.00 0.00 3.85
2405 2497 1.686587 GTTTTACCTTGGCTTGCACCT 59.313 47.619 0.00 0.00 0.00 4.00
2406 2498 1.686587 AGTTTTACCTTGGCTTGCACC 59.313 47.619 0.00 0.00 0.00 5.01
2407 2499 3.452755 AAGTTTTACCTTGGCTTGCAC 57.547 42.857 0.00 0.00 0.00 4.57
2408 2500 3.572255 CCTAAGTTTTACCTTGGCTTGCA 59.428 43.478 0.00 0.00 0.00 4.08
2409 2501 3.056821 CCCTAAGTTTTACCTTGGCTTGC 60.057 47.826 0.00 0.00 0.00 4.01
2410 2502 3.056821 GCCCTAAGTTTTACCTTGGCTTG 60.057 47.826 0.00 0.00 33.13 4.01
2411 2503 3.162666 GCCCTAAGTTTTACCTTGGCTT 58.837 45.455 0.00 0.00 33.13 4.35
2412 2504 2.109304 TGCCCTAAGTTTTACCTTGGCT 59.891 45.455 0.00 0.00 35.56 4.75
2413 2505 2.521126 TGCCCTAAGTTTTACCTTGGC 58.479 47.619 0.00 0.00 35.26 4.52
2414 2506 4.334481 CGTATGCCCTAAGTTTTACCTTGG 59.666 45.833 0.00 0.00 0.00 3.61
2415 2507 4.201881 GCGTATGCCCTAAGTTTTACCTTG 60.202 45.833 0.00 0.00 33.98 3.61
2416 2508 3.943381 GCGTATGCCCTAAGTTTTACCTT 59.057 43.478 0.00 0.00 33.98 3.50
2417 2509 3.199289 AGCGTATGCCCTAAGTTTTACCT 59.801 43.478 2.51 0.00 44.31 3.08
2418 2510 3.311596 CAGCGTATGCCCTAAGTTTTACC 59.688 47.826 2.51 0.00 44.31 2.85
2419 2511 4.186159 TCAGCGTATGCCCTAAGTTTTAC 58.814 43.478 2.51 0.00 44.31 2.01
2420 2512 4.160814 TCTCAGCGTATGCCCTAAGTTTTA 59.839 41.667 2.51 0.00 44.31 1.52
2421 2513 3.055385 TCTCAGCGTATGCCCTAAGTTTT 60.055 43.478 2.51 0.00 44.31 2.43
2422 2514 2.500098 TCTCAGCGTATGCCCTAAGTTT 59.500 45.455 2.51 0.00 44.31 2.66
2423 2515 2.101582 CTCTCAGCGTATGCCCTAAGTT 59.898 50.000 2.51 0.00 44.31 2.66
2424 2516 1.683917 CTCTCAGCGTATGCCCTAAGT 59.316 52.381 2.51 0.00 44.31 2.24
2425 2517 1.957177 TCTCTCAGCGTATGCCCTAAG 59.043 52.381 2.51 0.00 44.31 2.18
2426 2518 2.067365 TCTCTCAGCGTATGCCCTAA 57.933 50.000 2.51 0.00 44.31 2.69
2427 2519 1.957177 CTTCTCTCAGCGTATGCCCTA 59.043 52.381 2.51 0.00 44.31 3.53
2428 2520 0.749649 CTTCTCTCAGCGTATGCCCT 59.250 55.000 2.51 0.00 44.31 5.19
2429 2521 0.461961 ACTTCTCTCAGCGTATGCCC 59.538 55.000 2.51 0.00 44.31 5.36
2430 2522 1.134965 ACACTTCTCTCAGCGTATGCC 60.135 52.381 2.51 0.00 44.31 4.40
2431 2523 1.923204 CACACTTCTCTCAGCGTATGC 59.077 52.381 0.00 0.00 43.24 3.14
2432 2524 2.919859 CACACACTTCTCTCAGCGTATG 59.080 50.000 0.00 0.00 0.00 2.39
2433 2525 2.094494 CCACACACTTCTCTCAGCGTAT 60.094 50.000 0.00 0.00 0.00 3.06
2434 2526 1.269723 CCACACACTTCTCTCAGCGTA 59.730 52.381 0.00 0.00 0.00 4.42
2435 2527 0.032678 CCACACACTTCTCTCAGCGT 59.967 55.000 0.00 0.00 0.00 5.07
2436 2528 0.315251 TCCACACACTTCTCTCAGCG 59.685 55.000 0.00 0.00 0.00 5.18
2437 2529 2.028658 TCATCCACACACTTCTCTCAGC 60.029 50.000 0.00 0.00 0.00 4.26
2438 2530 3.949842 TCATCCACACACTTCTCTCAG 57.050 47.619 0.00 0.00 0.00 3.35
2439 2531 3.244215 GGTTCATCCACACACTTCTCTCA 60.244 47.826 0.00 0.00 35.97 3.27
2440 2532 3.330267 GGTTCATCCACACACTTCTCTC 58.670 50.000 0.00 0.00 35.97 3.20
2441 2533 2.039084 GGGTTCATCCACACACTTCTCT 59.961 50.000 0.00 0.00 38.11 3.10
2442 2534 2.224523 TGGGTTCATCCACACACTTCTC 60.225 50.000 0.00 0.00 38.11 2.87
2443 2535 1.774254 TGGGTTCATCCACACACTTCT 59.226 47.619 0.00 0.00 38.11 2.85
2444 2536 2.270352 TGGGTTCATCCACACACTTC 57.730 50.000 0.00 0.00 38.11 3.01
2445 2537 2.108075 TCATGGGTTCATCCACACACTT 59.892 45.455 0.00 0.00 39.97 3.16
2446 2538 1.704628 TCATGGGTTCATCCACACACT 59.295 47.619 0.00 0.00 39.97 3.55
2447 2539 2.086869 CTCATGGGTTCATCCACACAC 58.913 52.381 0.00 0.00 39.97 3.82
2448 2540 1.614051 GCTCATGGGTTCATCCACACA 60.614 52.381 0.00 0.00 39.97 3.72
2449 2541 1.098050 GCTCATGGGTTCATCCACAC 58.902 55.000 0.00 0.00 39.97 3.82
2450 2542 0.697658 TGCTCATGGGTTCATCCACA 59.302 50.000 0.00 0.00 39.97 4.17
2451 2543 1.098050 GTGCTCATGGGTTCATCCAC 58.902 55.000 0.00 0.00 39.97 4.02
2452 2544 0.697658 TGTGCTCATGGGTTCATCCA 59.302 50.000 0.00 0.00 41.60 3.41
2453 2545 1.679680 CATGTGCTCATGGGTTCATCC 59.320 52.381 18.85 0.00 45.30 3.51
2463 2555 2.592102 AACTGGGTTCATGTGCTCAT 57.408 45.000 0.00 0.00 34.21 2.90
2464 2556 2.363306 AAACTGGGTTCATGTGCTCA 57.637 45.000 0.00 0.00 0.00 4.26
2465 2557 4.846779 TTAAAACTGGGTTCATGTGCTC 57.153 40.909 0.00 0.00 0.00 4.26
2466 2558 5.606348 TTTTAAAACTGGGTTCATGTGCT 57.394 34.783 0.00 0.00 0.00 4.40
2467 2559 5.815222 AGTTTTTAAAACTGGGTTCATGTGC 59.185 36.000 20.54 0.00 0.00 4.57
2468 2560 7.841915 AAGTTTTTAAAACTGGGTTCATGTG 57.158 32.000 21.68 0.00 0.00 3.21
2517 2609 7.498900 TGTGAAGATGTATGTGTGAGACTTTTT 59.501 33.333 0.00 0.00 0.00 1.94
2518 2610 6.992123 TGTGAAGATGTATGTGTGAGACTTTT 59.008 34.615 0.00 0.00 0.00 2.27
2519 2611 6.524734 TGTGAAGATGTATGTGTGAGACTTT 58.475 36.000 0.00 0.00 0.00 2.66
2520 2612 6.101650 TGTGAAGATGTATGTGTGAGACTT 57.898 37.500 0.00 0.00 0.00 3.01
2521 2613 5.728637 TGTGAAGATGTATGTGTGAGACT 57.271 39.130 0.00 0.00 0.00 3.24
2522 2614 6.815641 AGAATGTGAAGATGTATGTGTGAGAC 59.184 38.462 0.00 0.00 0.00 3.36
2523 2615 6.939622 AGAATGTGAAGATGTATGTGTGAGA 58.060 36.000 0.00 0.00 0.00 3.27
2524 2616 8.762426 CATAGAATGTGAAGATGTATGTGTGAG 58.238 37.037 0.00 0.00 0.00 3.51
2525 2617 8.260114 ACATAGAATGTGAAGATGTATGTGTGA 58.740 33.333 0.00 0.00 43.01 3.58
2526 2618 8.429493 ACATAGAATGTGAAGATGTATGTGTG 57.571 34.615 0.00 0.00 43.01 3.82
2541 2633 3.610040 TTCTCCGTGCACATAGAATGT 57.390 42.857 21.04 0.00 46.22 2.71
2542 2634 3.935203 ACTTTCTCCGTGCACATAGAATG 59.065 43.478 26.22 26.22 32.39 2.67
2543 2635 4.207891 ACTTTCTCCGTGCACATAGAAT 57.792 40.909 23.89 12.62 0.00 2.40
2544 2636 3.678056 ACTTTCTCCGTGCACATAGAA 57.322 42.857 21.04 21.04 0.00 2.10
2545 2637 3.678056 AACTTTCTCCGTGCACATAGA 57.322 42.857 18.64 15.32 0.00 1.98
2546 2638 3.745975 TGAAACTTTCTCCGTGCACATAG 59.254 43.478 18.64 13.12 0.00 2.23
2547 2639 3.496884 GTGAAACTTTCTCCGTGCACATA 59.503 43.478 18.64 2.50 0.00 2.29
2548 2640 2.290641 GTGAAACTTTCTCCGTGCACAT 59.709 45.455 18.64 0.00 0.00 3.21
2549 2641 1.668751 GTGAAACTTTCTCCGTGCACA 59.331 47.619 18.64 0.00 0.00 4.57
2550 2642 1.332904 CGTGAAACTTTCTCCGTGCAC 60.333 52.381 6.82 6.82 31.75 4.57
2551 2643 0.934496 CGTGAAACTTTCTCCGTGCA 59.066 50.000 3.22 0.00 31.75 4.57
2552 2644 0.234884 CCGTGAAACTTTCTCCGTGC 59.765 55.000 3.22 0.00 31.75 5.34
2553 2645 1.860676 TCCGTGAAACTTTCTCCGTG 58.139 50.000 3.22 1.60 31.75 4.94
2554 2646 2.607631 TTCCGTGAAACTTTCTCCGT 57.392 45.000 3.22 0.00 31.75 4.69
2555 2647 3.955771 TTTTCCGTGAAACTTTCTCCG 57.044 42.857 3.22 5.42 30.83 4.63
2556 2648 7.423199 AGTTATTTTTCCGTGAAACTTTCTCC 58.577 34.615 3.22 0.00 30.83 3.71
2557 2649 8.851960 AAGTTATTTTTCCGTGAAACTTTCTC 57.148 30.769 3.22 0.00 34.44 2.87
2558 2650 8.683615 AGAAGTTATTTTTCCGTGAAACTTTCT 58.316 29.630 3.22 0.00 37.31 2.52
2559 2651 8.851960 AGAAGTTATTTTTCCGTGAAACTTTC 57.148 30.769 0.00 0.00 37.31 2.62
2560 2652 9.083080 CAAGAAGTTATTTTTCCGTGAAACTTT 57.917 29.630 0.00 0.00 37.31 2.66
2561 2653 7.704899 CCAAGAAGTTATTTTTCCGTGAAACTT 59.295 33.333 0.00 0.00 39.24 2.66
2562 2654 7.147966 ACCAAGAAGTTATTTTTCCGTGAAACT 60.148 33.333 0.00 0.00 30.83 2.66
2563 2655 6.976349 ACCAAGAAGTTATTTTTCCGTGAAAC 59.024 34.615 0.00 0.00 30.83 2.78
2564 2656 7.102847 ACCAAGAAGTTATTTTTCCGTGAAA 57.897 32.000 0.00 0.00 0.00 2.69
2565 2657 6.512091 CGACCAAGAAGTTATTTTTCCGTGAA 60.512 38.462 0.00 0.00 0.00 3.18
2566 2658 5.049954 CGACCAAGAAGTTATTTTTCCGTGA 60.050 40.000 0.00 0.00 0.00 4.35
2567 2659 5.144359 CGACCAAGAAGTTATTTTTCCGTG 58.856 41.667 0.00 0.00 0.00 4.94
2568 2660 4.214758 CCGACCAAGAAGTTATTTTTCCGT 59.785 41.667 0.00 0.00 0.00 4.69
2569 2661 4.719040 CCGACCAAGAAGTTATTTTTCCG 58.281 43.478 0.00 0.00 0.00 4.30
2570 2662 4.482386 GCCGACCAAGAAGTTATTTTTCC 58.518 43.478 0.00 0.00 0.00 3.13
2571 2663 4.482386 GGCCGACCAAGAAGTTATTTTTC 58.518 43.478 0.00 0.00 35.26 2.29
2572 2664 3.257375 GGGCCGACCAAGAAGTTATTTTT 59.743 43.478 0.00 0.00 39.85 1.94
2573 2665 2.823747 GGGCCGACCAAGAAGTTATTTT 59.176 45.455 0.00 0.00 39.85 1.82
2574 2666 2.443416 GGGCCGACCAAGAAGTTATTT 58.557 47.619 0.00 0.00 39.85 1.40
2575 2667 1.677820 CGGGCCGACCAAGAAGTTATT 60.678 52.381 24.41 0.00 40.22 1.40
2576 2668 0.107848 CGGGCCGACCAAGAAGTTAT 60.108 55.000 24.41 0.00 40.22 1.89
2577 2669 1.294138 CGGGCCGACCAAGAAGTTA 59.706 57.895 24.41 0.00 40.22 2.24
2578 2670 2.032071 CGGGCCGACCAAGAAGTT 59.968 61.111 24.41 0.00 40.22 2.66
2579 2671 3.239253 ACGGGCCGACCAAGAAGT 61.239 61.111 35.78 2.80 40.22 3.01
2580 2672 2.742372 CACGGGCCGACCAAGAAG 60.742 66.667 35.78 7.43 40.22 2.85
2584 2676 4.877619 TTTGCACGGGCCGACCAA 62.878 61.111 35.78 28.63 40.22 3.67
2585 2677 4.877619 TTTTGCACGGGCCGACCA 62.878 61.111 35.78 24.70 40.22 4.02
2586 2678 3.597728 TTTTTGCACGGGCCGACC 61.598 61.111 35.78 22.28 40.13 4.79
2610 2702 9.995003 TCTAAATAGCATTCCACAACAAATTTT 57.005 25.926 0.00 0.00 0.00 1.82
2611 2703 9.995003 TTCTAAATAGCATTCCACAACAAATTT 57.005 25.926 0.00 0.00 0.00 1.82
2612 2704 9.643693 CTTCTAAATAGCATTCCACAACAAATT 57.356 29.630 0.00 0.00 0.00 1.82
2613 2705 7.761249 GCTTCTAAATAGCATTCCACAACAAAT 59.239 33.333 0.00 0.00 38.51 2.32
2614 2706 7.090173 GCTTCTAAATAGCATTCCACAACAAA 58.910 34.615 0.00 0.00 38.51 2.83
2615 2707 6.208402 TGCTTCTAAATAGCATTCCACAACAA 59.792 34.615 0.00 0.00 43.30 2.83
2616 2708 5.709631 TGCTTCTAAATAGCATTCCACAACA 59.290 36.000 0.00 0.00 43.30 3.33
2617 2709 6.194796 TGCTTCTAAATAGCATTCCACAAC 57.805 37.500 0.00 0.00 43.30 3.32
2626 2718 7.885297 ACAAATTTCAGTGCTTCTAAATAGCA 58.115 30.769 0.00 0.00 45.78 3.49
2627 2719 8.239998 AGACAAATTTCAGTGCTTCTAAATAGC 58.760 33.333 0.00 0.00 39.10 2.97
2630 2722 9.822185 AAAAGACAAATTTCAGTGCTTCTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
2631 2723 9.651913 AAAAAGACAAATTTCAGTGCTTCTAAA 57.348 25.926 0.00 0.00 0.00 1.85
2656 2748 6.279513 TCTCTTTTTGTTTTGCTCCTCAAA 57.720 33.333 0.00 0.00 42.50 2.69
2657 2749 5.913137 TCTCTTTTTGTTTTGCTCCTCAA 57.087 34.783 0.00 0.00 0.00 3.02
2658 2750 6.469782 AATCTCTTTTTGTTTTGCTCCTCA 57.530 33.333 0.00 0.00 0.00 3.86
2659 2751 7.708322 AGAAAATCTCTTTTTGTTTTGCTCCTC 59.292 33.333 0.00 0.00 37.65 3.71
2660 2752 7.559486 AGAAAATCTCTTTTTGTTTTGCTCCT 58.441 30.769 0.00 0.00 37.65 3.69
2661 2753 7.492344 TGAGAAAATCTCTTTTTGTTTTGCTCC 59.508 33.333 8.68 0.00 43.73 4.70
2662 2754 8.323854 GTGAGAAAATCTCTTTTTGTTTTGCTC 58.676 33.333 8.68 0.00 43.73 4.26
2663 2755 7.818930 TGTGAGAAAATCTCTTTTTGTTTTGCT 59.181 29.630 8.68 0.00 43.73 3.91
2664 2756 7.962917 TGTGAGAAAATCTCTTTTTGTTTTGC 58.037 30.769 8.68 0.00 43.73 3.68
2667 2759 9.874205 TGATTGTGAGAAAATCTCTTTTTGTTT 57.126 25.926 8.68 0.00 43.73 2.83
2687 2779 3.987220 GCGGCACAAAGTTTTATGATTGT 59.013 39.130 0.00 0.00 36.49 2.71
2688 2780 3.059306 CGCGGCACAAAGTTTTATGATTG 59.941 43.478 0.00 0.00 0.00 2.67
2689 2781 3.241701 CGCGGCACAAAGTTTTATGATT 58.758 40.909 0.00 0.00 0.00 2.57
2690 2782 2.862512 CGCGGCACAAAGTTTTATGAT 58.137 42.857 0.00 0.00 0.00 2.45
2691 2783 1.664588 GCGCGGCACAAAGTTTTATGA 60.665 47.619 8.83 0.00 0.00 2.15
2692 2784 0.707822 GCGCGGCACAAAGTTTTATG 59.292 50.000 8.83 0.00 0.00 1.90
2693 2785 0.312416 TGCGCGGCACAAAGTTTTAT 59.688 45.000 8.83 0.00 31.71 1.40
2694 2786 1.728069 TGCGCGGCACAAAGTTTTA 59.272 47.368 8.83 0.00 31.71 1.52
2695 2787 2.492090 TGCGCGGCACAAAGTTTT 59.508 50.000 8.83 0.00 31.71 2.43
2704 2796 2.866750 CAATAAGTGTGCGCGGCA 59.133 55.556 8.83 3.20 35.60 5.69
2705 2797 2.576847 GCAATAAGTGTGCGCGGC 60.577 61.111 8.83 0.00 31.20 6.53
2706 2798 0.386605 TTTGCAATAAGTGTGCGCGG 60.387 50.000 8.83 0.00 45.27 6.46
2707 2799 0.976963 CTTTGCAATAAGTGTGCGCG 59.023 50.000 0.00 0.00 45.27 6.86
2708 2800 2.330231 TCTTTGCAATAAGTGTGCGC 57.670 45.000 0.00 0.00 45.27 6.09
2709 2801 6.303970 GCATATATCTTTGCAATAAGTGTGCG 59.696 38.462 0.00 0.00 45.27 5.34
2710 2802 7.140705 TGCATATATCTTTGCAATAAGTGTGC 58.859 34.615 0.00 7.03 45.30 4.57
2785 2877 6.928492 GGCCATATGAACTCACTTTTCAAAAA 59.072 34.615 3.65 0.00 36.57 1.94
2786 2878 6.454795 GGCCATATGAACTCACTTTTCAAAA 58.545 36.000 3.65 0.00 36.57 2.44
2787 2879 5.047377 GGGCCATATGAACTCACTTTTCAAA 60.047 40.000 4.39 0.00 36.57 2.69
2788 2880 4.462483 GGGCCATATGAACTCACTTTTCAA 59.538 41.667 4.39 0.00 36.57 2.69
2789 2881 4.016444 GGGCCATATGAACTCACTTTTCA 58.984 43.478 4.39 0.00 37.38 2.69
2790 2882 4.096984 CAGGGCCATATGAACTCACTTTTC 59.903 45.833 6.18 0.00 0.00 2.29
2791 2883 4.019174 CAGGGCCATATGAACTCACTTTT 58.981 43.478 6.18 0.00 0.00 2.27
2792 2884 3.624777 CAGGGCCATATGAACTCACTTT 58.375 45.455 6.18 0.00 0.00 2.66
2793 2885 2.684927 GCAGGGCCATATGAACTCACTT 60.685 50.000 6.18 0.00 0.00 3.16
2794 2886 1.133976 GCAGGGCCATATGAACTCACT 60.134 52.381 6.18 0.00 0.00 3.41
2795 2887 1.312815 GCAGGGCCATATGAACTCAC 58.687 55.000 6.18 0.00 0.00 3.51
2796 2888 0.179048 CGCAGGGCCATATGAACTCA 60.179 55.000 6.18 0.00 0.00 3.41
2797 2889 0.179045 ACGCAGGGCCATATGAACTC 60.179 55.000 6.18 0.00 0.00 3.01
2798 2890 0.464373 CACGCAGGGCCATATGAACT 60.464 55.000 6.18 0.00 0.00 3.01
2799 2891 2.024918 CACGCAGGGCCATATGAAC 58.975 57.895 6.18 0.00 0.00 3.18
2800 2892 1.823470 GCACGCAGGGCCATATGAA 60.823 57.895 6.18 0.00 0.00 2.57
2801 2893 2.203195 GCACGCAGGGCCATATGA 60.203 61.111 6.18 0.00 0.00 2.15
2802 2894 2.516695 TGCACGCAGGGCCATATG 60.517 61.111 6.18 0.40 0.00 1.78
2803 2895 2.203252 CTGCACGCAGGGCCATAT 60.203 61.111 11.29 0.00 40.17 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.