Multiple sequence alignment - TraesCS3D01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G306700 chr3D 100.000 6782 0 0 1 6782 420468424 420461643 0.000000e+00 12525.0
1 TraesCS3D01G306700 chr3D 96.848 571 17 1 1 570 513878132 513878702 0.000000e+00 953.0
2 TraesCS3D01G306700 chr3D 76.923 130 28 1 443 570 554698517 554698646 9.430000e-09 73.1
3 TraesCS3D01G306700 chr3A 93.981 2492 127 12 1789 4269 530475087 530477566 0.000000e+00 3749.0
4 TraesCS3D01G306700 chr3A 92.864 1121 52 15 605 1725 530473990 530475082 0.000000e+00 1602.0
5 TraesCS3D01G306700 chr3A 95.519 848 25 4 4287 5132 530477630 530478466 0.000000e+00 1343.0
6 TraesCS3D01G306700 chr3A 91.226 1003 36 15 5213 6208 530478464 530479421 0.000000e+00 1317.0
7 TraesCS3D01G306700 chr3A 87.535 361 22 7 6261 6612 530480380 530480726 4.930000e-106 396.0
8 TraesCS3D01G306700 chr3A 84.058 276 28 8 1373 1648 731640284 731640543 1.130000e-62 252.0
9 TraesCS3D01G306700 chr3A 95.575 113 3 2 6665 6776 530481080 530481191 5.400000e-41 180.0
10 TraesCS3D01G306700 chr3A 96.703 91 3 0 6199 6289 530480284 530480374 1.180000e-32 152.0
11 TraesCS3D01G306700 chr3A 86.131 137 14 3 435 571 25010731 25010600 7.090000e-30 143.0
12 TraesCS3D01G306700 chr3A 93.023 86 6 0 351 436 25010864 25010779 7.140000e-25 126.0
13 TraesCS3D01G306700 chr3A 92.063 63 5 0 6608 6670 530481000 530481062 9.370000e-14 89.8
14 TraesCS3D01G306700 chr3A 93.878 49 3 0 4287 4335 438362300 438362252 2.620000e-09 75.0
15 TraesCS3D01G306700 chr3B 93.214 1901 67 16 875 2758 547344284 547342429 0.000000e+00 2739.0
16 TraesCS3D01G306700 chr3B 87.862 1590 115 25 5213 6757 547339995 547338439 0.000000e+00 1796.0
17 TraesCS3D01G306700 chr3B 88.427 1443 138 13 2849 4269 368598225 368599660 0.000000e+00 1712.0
18 TraesCS3D01G306700 chr3B 95.390 846 39 0 4287 5132 547340838 547339993 0.000000e+00 1347.0
19 TraesCS3D01G306700 chr3B 86.792 106 9 3 696 801 547344840 547344740 5.560000e-21 113.0
20 TraesCS3D01G306700 chr3B 93.878 49 3 0 4287 4335 424128903 424128951 2.620000e-09 75.0
21 TraesCS3D01G306700 chr2D 88.589 1446 135 14 2846 4269 364091333 364092770 0.000000e+00 1729.0
22 TraesCS3D01G306700 chr2D 95.652 92 4 0 5130 5221 14626041 14625950 1.520000e-31 148.0
23 TraesCS3D01G306700 chr2D 92.929 99 6 1 5129 5227 588164125 588164222 7.090000e-30 143.0
24 TraesCS3D01G306700 chr2D 85.185 81 12 0 491 571 88406162 88406082 4.360000e-12 84.2
25 TraesCS3D01G306700 chr2D 80.612 98 19 0 473 570 647192770 647192867 7.290000e-10 76.8
26 TraesCS3D01G306700 chr7A 88.435 1444 139 12 2846 4269 109351960 109350525 0.000000e+00 1716.0
27 TraesCS3D01G306700 chr7A 88.443 1445 135 15 2846 4269 319591997 319590564 0.000000e+00 1714.0
28 TraesCS3D01G306700 chr7A 78.788 132 26 2 440 569 51834504 51834373 3.370000e-13 87.9
29 TraesCS3D01G306700 chr7A 95.652 46 2 0 4287 4332 442269037 442269082 2.620000e-09 75.0
30 TraesCS3D01G306700 chr5A 88.390 1447 140 13 2844 4269 602839200 602837761 0.000000e+00 1716.0
31 TraesCS3D01G306700 chr5A 96.739 92 3 0 5130 5221 3296161 3296070 3.280000e-33 154.0
32 TraesCS3D01G306700 chr5A 95.652 92 4 0 5130 5221 3295012 3294921 1.520000e-31 148.0
33 TraesCS3D01G306700 chr5A 89.535 86 6 1 351 436 412520981 412521063 9.300000e-19 106.0
34 TraesCS3D01G306700 chr4A 88.390 1447 139 13 2844 4269 438239436 438240874 0.000000e+00 1714.0
35 TraesCS3D01G306700 chr4A 85.535 159 22 1 1369 1527 721724167 721724010 1.510000e-36 165.0
36 TraesCS3D01G306700 chr4A 94.624 93 5 0 5130 5222 663651231 663651323 1.970000e-30 145.0
37 TraesCS3D01G306700 chr2A 88.443 1445 136 14 2846 4269 578390480 578391914 0.000000e+00 1714.0
38 TraesCS3D01G306700 chr1A 88.382 1446 136 14 2845 4269 292063132 292061698 0.000000e+00 1711.0
39 TraesCS3D01G306700 chr1A 82.192 292 26 11 1 292 371573433 371573168 1.900000e-55 228.0
40 TraesCS3D01G306700 chr1A 86.000 100 11 2 109 206 588888834 588888932 3.350000e-18 104.0
41 TraesCS3D01G306700 chr4D 86.834 319 33 6 12 324 51860633 51860318 1.400000e-91 348.0
42 TraesCS3D01G306700 chr4D 78.125 128 28 0 443 570 505938381 505938254 1.570000e-11 82.4
43 TraesCS3D01G306700 chr4D 92.000 50 4 0 521 570 509205621 509205572 3.390000e-08 71.3
44 TraesCS3D01G306700 chr4D 91.667 48 2 2 524 570 24255081 24255035 1.580000e-06 65.8
45 TraesCS3D01G306700 chr4D 92.500 40 3 0 524 563 320591393 320591432 2.640000e-04 58.4
46 TraesCS3D01G306700 chr2B 88.298 282 28 4 12 292 50042952 50043229 3.920000e-87 333.0
47 TraesCS3D01G306700 chr2B 89.423 208 18 2 12 219 546783241 546783038 6.750000e-65 259.0
48 TraesCS3D01G306700 chr2B 88.722 133 13 1 442 574 748192748 748192618 1.960000e-35 161.0
49 TraesCS3D01G306700 chr2B 90.291 103 8 1 442 544 603307230 603307130 4.270000e-27 134.0
50 TraesCS3D01G306700 chr2B 94.186 86 5 0 351 436 37318096 37318011 1.530000e-26 132.0
51 TraesCS3D01G306700 chr2B 82.576 132 23 0 439 570 67303256 67303387 4.300000e-22 117.0
52 TraesCS3D01G306700 chr2B 88.372 86 7 1 351 436 748192905 748192823 4.330000e-17 100.0
53 TraesCS3D01G306700 chr2B 93.878 49 3 0 4287 4335 535577774 535577822 2.620000e-09 75.0
54 TraesCS3D01G306700 chr5D 90.795 239 20 1 12 248 355430129 355430367 1.100000e-82 318.0
55 TraesCS3D01G306700 chr5D 96.739 92 3 0 5130 5221 6375531 6375622 3.280000e-33 154.0
56 TraesCS3D01G306700 chr5D 91.765 85 6 1 352 436 480606110 480606027 4.300000e-22 117.0
57 TraesCS3D01G306700 chr5D 86.842 76 9 1 506 580 553227533 553227458 4.360000e-12 84.2
58 TraesCS3D01G306700 chr5D 86.842 76 9 1 506 580 553261891 553261816 4.360000e-12 84.2
59 TraesCS3D01G306700 chr5D 93.878 49 3 0 4287 4335 397623603 397623555 2.620000e-09 75.0
60 TraesCS3D01G306700 chr5D 76.923 130 28 1 443 570 505021397 505021268 9.430000e-09 73.1
61 TraesCS3D01G306700 chr5D 85.714 63 9 0 509 571 479389416 479389478 4.390000e-07 67.6
62 TraesCS3D01G306700 chr7D 92.627 217 16 0 3 219 182507369 182507585 5.110000e-81 313.0
63 TraesCS3D01G306700 chr7D 95.294 85 4 0 352 436 497009321 497009237 1.190000e-27 135.0
64 TraesCS3D01G306700 chr7D 76.923 130 28 1 443 570 548338358 548338229 9.430000e-09 73.1
65 TraesCS3D01G306700 chr7B 92.627 217 16 0 3 219 150928106 150928322 5.110000e-81 313.0
66 TraesCS3D01G306700 chr7B 80.321 249 27 11 351 577 690935076 690934828 1.170000e-37 169.0
67 TraesCS3D01G306700 chr7B 86.792 106 11 2 109 212 122284675 122284571 1.550000e-21 115.0
68 TraesCS3D01G306700 chr6A 94.475 181 9 1 1 181 286527493 286527672 1.860000e-70 278.0
69 TraesCS3D01G306700 chr1D 81.787 291 29 8 2 292 298312745 298312479 8.850000e-54 222.0
70 TraesCS3D01G306700 chr1D 95.294 85 4 0 352 436 159867830 159867746 1.190000e-27 135.0
71 TraesCS3D01G306700 chr1D 93.878 49 3 0 4287 4335 53384606 53384654 2.620000e-09 75.0
72 TraesCS3D01G306700 chr1D 76.515 132 31 0 439 570 114163077 114163208 9.430000e-09 73.1
73 TraesCS3D01G306700 chr1D 84.127 63 10 0 508 570 416840316 416840378 2.040000e-05 62.1
74 TraesCS3D01G306700 chr1D 100.000 31 0 0 521 551 144199168 144199198 2.640000e-04 58.4
75 TraesCS3D01G306700 chr4B 95.699 93 4 0 5130 5222 4233601 4233509 4.240000e-32 150.0
76 TraesCS3D01G306700 chr4B 78.838 241 29 10 351 570 577019974 577019735 7.090000e-30 143.0
77 TraesCS3D01G306700 chr4B 78.295 129 28 0 443 571 69934979 69935107 4.360000e-12 84.2
78 TraesCS3D01G306700 chr6D 96.667 90 2 1 5127 5215 427344851 427344940 1.520000e-31 148.0
79 TraesCS3D01G306700 chr6D 90.000 50 5 0 521 570 69407574 69407525 1.580000e-06 65.8
80 TraesCS3D01G306700 chr1B 96.591 88 3 0 5128 5215 151463397 151463484 5.480000e-31 147.0
81 TraesCS3D01G306700 chr1B 95.745 47 2 0 4289 4335 255500339 255500293 7.290000e-10 76.8
82 TraesCS3D01G306700 chr1B 89.286 56 5 1 523 577 51406027 51406082 1.220000e-07 69.4
83 TraesCS3D01G306700 chr6B 86.364 110 11 3 100 206 404128862 404128970 4.300000e-22 117.0
84 TraesCS3D01G306700 chr5B 89.773 88 6 1 351 438 44702854 44702938 7.190000e-20 110.0
85 TraesCS3D01G306700 chrUn 80.992 121 23 0 439 559 65689354 65689474 5.600000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G306700 chr3D 420461643 420468424 6781 True 12525.00 12525 100.00000 1 6782 1 chr3D.!!$R1 6781
1 TraesCS3D01G306700 chr3D 513878132 513878702 570 False 953.00 953 96.84800 1 570 1 chr3D.!!$F1 569
2 TraesCS3D01G306700 chr3A 530473990 530481191 7201 False 1103.60 3749 93.18325 605 6776 8 chr3A.!!$F2 6171
3 TraesCS3D01G306700 chr3B 368598225 368599660 1435 False 1712.00 1712 88.42700 2849 4269 1 chr3B.!!$F1 1420
4 TraesCS3D01G306700 chr3B 547338439 547344840 6401 True 1498.75 2739 90.81450 696 6757 4 chr3B.!!$R1 6061
5 TraesCS3D01G306700 chr2D 364091333 364092770 1437 False 1729.00 1729 88.58900 2846 4269 1 chr2D.!!$F1 1423
6 TraesCS3D01G306700 chr7A 109350525 109351960 1435 True 1716.00 1716 88.43500 2846 4269 1 chr7A.!!$R2 1423
7 TraesCS3D01G306700 chr7A 319590564 319591997 1433 True 1714.00 1714 88.44300 2846 4269 1 chr7A.!!$R3 1423
8 TraesCS3D01G306700 chr5A 602837761 602839200 1439 True 1716.00 1716 88.39000 2844 4269 1 chr5A.!!$R1 1425
9 TraesCS3D01G306700 chr4A 438239436 438240874 1438 False 1714.00 1714 88.39000 2844 4269 1 chr4A.!!$F1 1425
10 TraesCS3D01G306700 chr2A 578390480 578391914 1434 False 1714.00 1714 88.44300 2846 4269 1 chr2A.!!$F1 1423
11 TraesCS3D01G306700 chr1A 292061698 292063132 1434 True 1711.00 1711 88.38200 2845 4269 1 chr1A.!!$R1 1424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 1319 0.677731 ACTCGGCCCACATGTCATTG 60.678 55.000 0.00 0.00 0.00 2.82 F
900 1321 1.678635 CGGCCCACATGTCATTGGT 60.679 57.895 0.00 0.00 0.00 3.67 F
2534 2967 0.655733 GAACCGCATATGTTGGGACG 59.344 55.000 17.14 6.22 40.62 4.79 F
2976 3483 0.107165 GCTTACCCCTGTCCATGACC 60.107 60.000 0.00 0.00 0.00 4.02 F
3485 3998 0.609957 TTCTGCAGCATTGACCCTGG 60.610 55.000 9.47 0.00 0.00 4.45 F
4346 4946 0.391263 GACTCCTGTACCAAAGCCCG 60.391 60.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2149 0.038435 CACATTTCAATGCCGCACCA 60.038 50.000 0.00 0.00 40.04 4.17 R
2621 3058 1.878088 CACTGTCAACTGAGCTGCAAT 59.122 47.619 1.02 0.00 0.00 3.56 R
4271 4825 0.036577 CAAGGAGTCTGAGGCCACTG 60.037 60.000 5.01 2.33 0.00 3.66 R
4283 4837 0.178990 GGTGAAAGGTGGCAAGGAGT 60.179 55.000 0.00 0.00 0.00 3.85 R
4348 4948 1.929836 GCTTTGGTCTGAGACATAGCG 59.070 52.381 15.33 0.00 33.68 4.26 R
6124 6749 0.240945 ACGCATCTTTCCGCAAAAGG 59.759 50.000 8.30 0.00 43.88 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.234466 ACCTACTGCTTCTTGAGATGTTT 57.766 39.130 0.00 0.00 0.00 2.83
60 61 6.560253 TTCTTGAGATGTTTCCTTTGTAGC 57.440 37.500 0.00 0.00 0.00 3.58
74 75 4.150451 CCTTTGTAGCGAATTTGCTTTTGG 59.850 41.667 24.97 15.44 44.46 3.28
83 84 8.546597 AGCGAATTTGCTTTTGGTATAAATTT 57.453 26.923 14.80 0.00 44.46 1.82
200 201 8.927675 ACTAAACTTGGTGTCAAATGGTTATA 57.072 30.769 0.00 0.00 31.77 0.98
205 206 9.487790 AACTTGGTGTCAAATGGTTATATTTTG 57.512 29.630 0.00 0.00 31.77 2.44
206 207 7.602265 ACTTGGTGTCAAATGGTTATATTTTGC 59.398 33.333 0.00 0.00 31.77 3.68
315 317 1.324383 GACCAAAACATTGGGACCGT 58.676 50.000 11.92 0.00 46.23 4.83
324 326 1.069775 ATTGGGACCGTAACCCTTGT 58.930 50.000 0.00 0.00 46.82 3.16
391 393 8.547967 TCTTATGTGTTCTCACTTTTGGTATC 57.452 34.615 0.00 0.00 44.14 2.24
543 545 4.717313 GTTGGGACCGGCACCCTC 62.717 72.222 29.42 20.89 46.82 4.30
570 572 4.546570 CAATGCGTGATTCCGATCTAGTA 58.453 43.478 0.00 0.00 33.28 1.82
571 573 4.848562 ATGCGTGATTCCGATCTAGTAA 57.151 40.909 0.00 0.00 33.28 2.24
572 574 3.961182 TGCGTGATTCCGATCTAGTAAC 58.039 45.455 0.00 0.00 33.28 2.50
573 575 3.630769 TGCGTGATTCCGATCTAGTAACT 59.369 43.478 0.00 0.00 33.28 2.24
574 576 4.818005 TGCGTGATTCCGATCTAGTAACTA 59.182 41.667 0.00 0.00 33.28 2.24
575 577 5.472478 TGCGTGATTCCGATCTAGTAACTAT 59.528 40.000 0.00 0.00 33.28 2.12
576 578 6.652062 TGCGTGATTCCGATCTAGTAACTATA 59.348 38.462 0.00 0.00 33.28 1.31
577 579 7.173735 TGCGTGATTCCGATCTAGTAACTATAA 59.826 37.037 0.00 0.00 33.28 0.98
578 580 7.693120 GCGTGATTCCGATCTAGTAACTATAAG 59.307 40.741 0.00 0.00 33.28 1.73
579 581 8.176365 CGTGATTCCGATCTAGTAACTATAAGG 58.824 40.741 0.00 0.00 33.28 2.69
580 582 9.228949 GTGATTCCGATCTAGTAACTATAAGGA 57.771 37.037 0.00 0.00 33.28 3.36
581 583 9.228949 TGATTCCGATCTAGTAACTATAAGGAC 57.771 37.037 0.00 0.00 33.28 3.85
582 584 9.452287 GATTCCGATCTAGTAACTATAAGGACT 57.548 37.037 0.00 0.00 0.00 3.85
584 586 9.941325 TTCCGATCTAGTAACTATAAGGACTAG 57.059 37.037 10.04 10.04 41.77 2.57
589 591 8.187913 TCTAGTAACTATAAGGACTAGAGCGA 57.812 38.462 13.03 0.00 43.34 4.93
590 592 8.306038 TCTAGTAACTATAAGGACTAGAGCGAG 58.694 40.741 13.03 0.00 43.34 5.03
591 593 6.829849 AGTAACTATAAGGACTAGAGCGAGT 58.170 40.000 0.00 0.00 0.00 4.18
592 594 6.930722 AGTAACTATAAGGACTAGAGCGAGTC 59.069 42.308 0.00 7.66 44.39 3.36
593 595 4.309099 ACTATAAGGACTAGAGCGAGTCG 58.691 47.826 8.54 8.54 45.80 4.18
594 596 2.975732 TAAGGACTAGAGCGAGTCGA 57.024 50.000 18.61 0.00 45.80 4.20
595 597 2.110901 AAGGACTAGAGCGAGTCGAA 57.889 50.000 18.61 0.00 45.80 3.71
596 598 1.658994 AGGACTAGAGCGAGTCGAAG 58.341 55.000 18.61 9.68 45.80 3.79
597 599 1.207570 AGGACTAGAGCGAGTCGAAGA 59.792 52.381 18.61 0.00 45.80 2.87
598 600 2.008329 GGACTAGAGCGAGTCGAAGAA 58.992 52.381 18.61 0.00 45.80 2.52
599 601 2.031191 GGACTAGAGCGAGTCGAAGAAG 59.969 54.545 18.61 10.03 45.80 2.85
600 602 2.674357 GACTAGAGCGAGTCGAAGAAGT 59.326 50.000 18.61 13.23 39.69 3.01
601 603 2.417239 ACTAGAGCGAGTCGAAGAAGTG 59.583 50.000 18.61 1.97 39.69 3.16
602 604 1.240256 AGAGCGAGTCGAAGAAGTGT 58.760 50.000 18.61 0.00 39.69 3.55
603 605 1.068885 AGAGCGAGTCGAAGAAGTGTG 60.069 52.381 18.61 0.00 39.69 3.82
608 610 3.309388 CGAGTCGAAGAAGTGTGTCATT 58.691 45.455 6.73 0.00 39.69 2.57
615 617 4.692625 CGAAGAAGTGTGTCATTGATCCTT 59.307 41.667 0.00 0.00 0.00 3.36
617 619 4.583871 AGAAGTGTGTCATTGATCCTTCC 58.416 43.478 11.01 0.00 0.00 3.46
619 621 4.213564 AGTGTGTCATTGATCCTTCCTC 57.786 45.455 0.00 0.00 0.00 3.71
624 626 5.163269 TGTGTCATTGATCCTTCCTCATAGG 60.163 44.000 0.00 0.00 36.46 2.57
625 627 4.971282 TGTCATTGATCCTTCCTCATAGGT 59.029 41.667 0.00 0.00 36.53 3.08
627 629 6.069440 TGTCATTGATCCTTCCTCATAGGTTT 60.069 38.462 0.00 0.00 36.53 3.27
630 632 6.500589 TTGATCCTTCCTCATAGGTTTAGG 57.499 41.667 0.00 0.00 36.53 2.69
631 633 5.538877 TGATCCTTCCTCATAGGTTTAGGT 58.461 41.667 0.00 1.83 36.53 3.08
634 636 7.290248 TGATCCTTCCTCATAGGTTTAGGTAAG 59.710 40.741 0.00 0.00 36.53 2.34
636 638 6.610425 TCCTTCCTCATAGGTTTAGGTAAGTC 59.390 42.308 9.64 0.00 36.53 3.01
638 640 7.125963 CCTTCCTCATAGGTTTAGGTAAGTCTT 59.874 40.741 0.00 0.00 36.53 3.01
639 641 7.657023 TCCTCATAGGTTTAGGTAAGTCTTC 57.343 40.000 0.00 0.00 36.53 2.87
654 656 9.091220 AGGTAAGTCTTCTTGTAGTAGACAATT 57.909 33.333 13.56 5.29 46.95 2.32
686 688 4.749099 GTCATGCTAAGACCTCACATGATC 59.251 45.833 0.00 0.00 46.19 2.92
692 694 4.356405 AAGACCTCACATGATCAACACA 57.644 40.909 0.00 0.00 0.00 3.72
706 708 1.603802 CAACACACCAGAGCGTCAATT 59.396 47.619 0.00 0.00 0.00 2.32
713 715 3.003689 CACCAGAGCGTCAATTGTCTTTT 59.996 43.478 5.13 0.00 0.00 2.27
714 716 4.213270 CACCAGAGCGTCAATTGTCTTTTA 59.787 41.667 5.13 0.00 0.00 1.52
779 781 4.455606 AGGTATGAAAATCAGCTAGGTGC 58.544 43.478 17.20 3.41 43.29 5.01
802 870 5.107453 GCCTCTGATAAACCATTACGATTCG 60.107 44.000 4.14 4.14 0.00 3.34
803 871 5.983720 CCTCTGATAAACCATTACGATTCGT 59.016 40.000 16.86 16.86 44.35 3.85
804 872 6.479001 CCTCTGATAAACCATTACGATTCGTT 59.521 38.462 17.93 0.00 41.54 3.85
805 873 7.011109 CCTCTGATAAACCATTACGATTCGTTT 59.989 37.037 17.93 6.89 41.54 3.60
807 875 8.723311 TCTGATAAACCATTACGATTCGTTTTT 58.277 29.630 17.93 11.08 41.54 1.94
809 877 8.504815 TGATAAACCATTACGATTCGTTTTTGA 58.495 29.630 17.93 0.00 41.54 2.69
810 878 8.889849 ATAAACCATTACGATTCGTTTTTGAG 57.110 30.769 17.93 9.00 41.54 3.02
811 879 4.719040 ACCATTACGATTCGTTTTTGAGC 58.281 39.130 17.93 0.00 41.54 4.26
812 880 4.454504 ACCATTACGATTCGTTTTTGAGCT 59.545 37.500 17.93 0.00 41.54 4.09
813 881 5.048991 ACCATTACGATTCGTTTTTGAGCTT 60.049 36.000 17.93 0.00 41.54 3.74
814 882 6.148150 ACCATTACGATTCGTTTTTGAGCTTA 59.852 34.615 17.93 0.00 41.54 3.09
815 883 7.018826 CCATTACGATTCGTTTTTGAGCTTAA 58.981 34.615 17.93 1.66 41.54 1.85
816 884 7.535940 CCATTACGATTCGTTTTTGAGCTTAAA 59.464 33.333 17.93 0.00 41.54 1.52
817 885 7.825627 TTACGATTCGTTTTTGAGCTTAAAC 57.174 32.000 17.93 6.57 41.54 2.01
818 886 5.209977 ACGATTCGTTTTTGAGCTTAAACC 58.790 37.500 5.75 0.00 36.35 3.27
819 887 5.209240 CGATTCGTTTTTGAGCTTAAACCA 58.791 37.500 2.67 0.00 32.05 3.67
820 888 5.856455 CGATTCGTTTTTGAGCTTAAACCAT 59.144 36.000 2.67 2.21 32.05 3.55
821 889 6.032460 CGATTCGTTTTTGAGCTTAAACCATC 59.968 38.462 2.67 8.99 32.05 3.51
822 890 5.759506 TCGTTTTTGAGCTTAAACCATCA 57.240 34.783 2.67 0.00 32.05 3.07
823 891 5.516090 TCGTTTTTGAGCTTAAACCATCAC 58.484 37.500 2.67 0.00 32.05 3.06
824 892 4.378616 CGTTTTTGAGCTTAAACCATCACG 59.621 41.667 2.67 4.28 32.05 4.35
825 893 5.516090 GTTTTTGAGCTTAAACCATCACGA 58.484 37.500 2.67 0.00 0.00 4.35
826 894 5.957842 TTTTGAGCTTAAACCATCACGAT 57.042 34.783 2.67 0.00 0.00 3.73
827 895 5.957842 TTTGAGCTTAAACCATCACGATT 57.042 34.783 0.00 0.00 0.00 3.34
828 896 5.545658 TTGAGCTTAAACCATCACGATTC 57.454 39.130 0.00 0.00 0.00 2.52
829 897 3.616821 TGAGCTTAAACCATCACGATTCG 59.383 43.478 4.14 4.14 0.00 3.34
830 898 3.596214 AGCTTAAACCATCACGATTCGT 58.404 40.909 5.75 5.75 42.36 3.85
831 899 4.751060 AGCTTAAACCATCACGATTCGTA 58.249 39.130 11.99 1.34 38.32 3.43
832 900 5.172934 AGCTTAAACCATCACGATTCGTAA 58.827 37.500 11.99 0.00 38.32 3.18
833 901 5.063060 AGCTTAAACCATCACGATTCGTAAC 59.937 40.000 11.99 0.00 38.32 2.50
834 902 5.063060 GCTTAAACCATCACGATTCGTAACT 59.937 40.000 11.99 0.00 38.32 2.24
835 903 6.636666 TTAAACCATCACGATTCGTAACTC 57.363 37.500 11.99 0.00 38.32 3.01
836 904 3.861276 ACCATCACGATTCGTAACTCA 57.139 42.857 11.99 0.00 38.32 3.41
898 1319 0.677731 ACTCGGCCCACATGTCATTG 60.678 55.000 0.00 0.00 0.00 2.82
900 1321 1.678635 CGGCCCACATGTCATTGGT 60.679 57.895 0.00 0.00 0.00 3.67
908 1329 3.466836 CACATGTCATTGGTAGCCGTAT 58.533 45.455 0.00 0.00 0.00 3.06
916 1337 2.994186 TGGTAGCCGTATTTTCCTCC 57.006 50.000 0.00 0.00 0.00 4.30
924 1345 2.609350 CGTATTTTCCTCCGGACGAAA 58.391 47.619 20.50 20.50 0.00 3.46
925 1346 2.995258 CGTATTTTCCTCCGGACGAAAA 59.005 45.455 30.64 30.64 41.00 2.29
926 1347 3.619929 CGTATTTTCCTCCGGACGAAAAT 59.380 43.478 35.42 35.42 45.77 1.82
1062 1485 2.125912 CGTGCCCTCTCCAACTCG 60.126 66.667 0.00 0.00 0.00 4.18
1416 1839 2.710902 CGTCGACATCTCCAGGCCA 61.711 63.158 17.16 0.00 0.00 5.36
1458 1881 2.038863 TCCTGTGTGGATTGTACCCT 57.961 50.000 0.00 0.00 40.56 4.34
1560 1983 3.001406 GGTGGCGAGTACCAGGGT 61.001 66.667 0.00 0.00 41.46 4.34
1641 2064 3.570975 TGTTAACAGAGGAGCTTGTACGA 59.429 43.478 3.59 0.00 0.00 3.43
1759 2182 9.268268 GCATTGAAATGTGAAATCCATATGAAT 57.732 29.630 3.65 0.00 38.65 2.57
1818 2241 5.339008 GACCTGGTGTCATATGTGTAGAA 57.661 43.478 2.82 0.00 43.85 2.10
1832 2255 6.639632 ATGTGTAGAAGCTTTGTTGACAAT 57.360 33.333 0.00 0.00 35.55 2.71
1903 2328 9.710900 TTTATATGTTAGCTATGACATGACCTG 57.289 33.333 17.63 0.00 36.41 4.00
1904 2329 5.620738 ATGTTAGCTATGACATGACCTGT 57.379 39.130 9.74 0.00 42.15 4.00
1963 2388 4.570772 AGATGGTGGTTTCGTTCATAATCG 59.429 41.667 0.00 0.00 0.00 3.34
1986 2411 6.377146 TCGATCGATCATAAATGATGGTAGGA 59.623 38.462 24.40 5.45 46.84 2.94
1987 2412 6.694844 CGATCGATCATAAATGATGGTAGGAG 59.305 42.308 24.40 0.00 46.84 3.69
1988 2413 6.918067 TCGATCATAAATGATGGTAGGAGT 57.082 37.500 10.12 0.00 46.84 3.85
2224 2652 6.547880 TCATTGCCAAGTCCTTTTGTAGTTAA 59.452 34.615 0.00 0.00 0.00 2.01
2246 2674 9.448294 GTTAATACTCCGTAGTCACTATCTTTG 57.552 37.037 0.00 0.00 37.15 2.77
2346 2774 2.576832 GCCCTGCAACAATGGCTGT 61.577 57.895 0.00 0.00 40.77 4.40
2424 2852 2.093973 ACTGCTATCGTGTCTTGAAGGG 60.094 50.000 0.00 0.00 0.00 3.95
2485 2918 7.252708 CAATATGCACAATGCTGAAGAAGTTA 58.747 34.615 2.02 0.00 45.31 2.24
2486 2919 5.710513 ATGCACAATGCTGAAGAAGTTAA 57.289 34.783 2.02 0.00 45.31 2.01
2534 2967 0.655733 GAACCGCATATGTTGGGACG 59.344 55.000 17.14 6.22 40.62 4.79
2609 3046 1.411041 GTCGGTTATAGGAGCCCACT 58.589 55.000 0.00 0.00 0.00 4.00
2621 3058 0.112995 AGCCCACTCCAAATCTTGCA 59.887 50.000 0.00 0.00 0.00 4.08
2732 3169 2.039746 CACACTGACCTGGAATGGGTTA 59.960 50.000 0.00 0.00 37.17 2.85
2758 3257 0.179000 GCCTGGTTGGATCGATGTCT 59.821 55.000 0.54 0.00 38.35 3.41
2792 3291 1.606885 CCGCACCCATCAAGGCAATT 61.607 55.000 0.00 0.00 35.39 2.32
2795 3294 2.480073 CGCACCCATCAAGGCAATTTAG 60.480 50.000 0.00 0.00 35.39 1.85
2798 3297 3.768757 CACCCATCAAGGCAATTTAGGAA 59.231 43.478 0.00 0.00 35.39 3.36
2841 3340 3.575805 TCAAATTTCAGACCAAAGCCCT 58.424 40.909 0.00 0.00 0.00 5.19
2842 3341 4.735369 TCAAATTTCAGACCAAAGCCCTA 58.265 39.130 0.00 0.00 0.00 3.53
2931 3430 3.947834 CCCATAAGATCTCACAACCAACC 59.052 47.826 0.00 0.00 0.00 3.77
2965 3472 2.907042 ACATGGATAGCTAGCTTACCCC 59.093 50.000 24.88 18.01 0.00 4.95
2966 3473 3.177228 CATGGATAGCTAGCTTACCCCT 58.823 50.000 24.88 11.51 0.00 4.79
2976 3483 0.107165 GCTTACCCCTGTCCATGACC 60.107 60.000 0.00 0.00 0.00 4.02
2982 3489 0.987294 CCCTGTCCATGACCAGTTCT 59.013 55.000 0.00 0.00 0.00 3.01
3019 3526 4.399618 CAGTCCTTCGGATCTCTCTTTACA 59.600 45.833 0.00 0.00 32.73 2.41
3042 3549 2.443255 ACTCCTCCCATGTCAAGTTTGT 59.557 45.455 0.00 0.00 0.00 2.83
3063 3570 3.491766 TCTACCCCAACCTCTCTTGAT 57.508 47.619 0.00 0.00 0.00 2.57
3139 3646 3.385755 GCTGAATATGCCCAAACCATCTT 59.614 43.478 0.00 0.00 0.00 2.40
3271 3779 2.810650 CGCATCTCCACTACACCTAAC 58.189 52.381 0.00 0.00 0.00 2.34
3272 3780 2.427453 CGCATCTCCACTACACCTAACT 59.573 50.000 0.00 0.00 0.00 2.24
3273 3781 3.630769 CGCATCTCCACTACACCTAACTA 59.369 47.826 0.00 0.00 0.00 2.24
3274 3782 4.278669 CGCATCTCCACTACACCTAACTAT 59.721 45.833 0.00 0.00 0.00 2.12
3276 3784 5.986135 GCATCTCCACTACACCTAACTATTG 59.014 44.000 0.00 0.00 0.00 1.90
3277 3785 6.183360 GCATCTCCACTACACCTAACTATTGA 60.183 42.308 0.00 0.00 0.00 2.57
3279 3787 7.166691 TCTCCACTACACCTAACTATTGAAC 57.833 40.000 0.00 0.00 0.00 3.18
3320 3833 3.058293 CACTCAACGCCATACAACATTGT 60.058 43.478 2.32 2.32 44.86 2.71
3385 3898 2.298729 GGCACTCTCTTCTCTTGTCACT 59.701 50.000 0.00 0.00 0.00 3.41
3396 3909 3.134623 TCTCTTGTCACTGAGAAAGCCAA 59.865 43.478 3.08 0.00 36.52 4.52
3397 3910 3.879295 CTCTTGTCACTGAGAAAGCCAAA 59.121 43.478 0.00 0.00 32.44 3.28
3403 3916 3.316308 TCACTGAGAAAGCCAAAAAGCTC 59.684 43.478 0.00 0.00 44.11 4.09
3404 3917 3.317430 CACTGAGAAAGCCAAAAAGCTCT 59.683 43.478 0.00 0.00 44.11 4.09
3426 3939 2.511600 CACTTCATCCGTCCGGCC 60.512 66.667 0.00 0.00 34.68 6.13
3485 3998 0.609957 TTCTGCAGCATTGACCCTGG 60.610 55.000 9.47 0.00 0.00 4.45
3492 4005 0.740737 GCATTGACCCTGGATTTCGG 59.259 55.000 0.00 0.00 0.00 4.30
3504 4017 3.821033 CTGGATTTCGGAAGGTGTTCTTT 59.179 43.478 0.00 0.00 35.50 2.52
3594 4113 8.446273 CACCTCATGTACTTGATTTTAGTTCTG 58.554 37.037 11.50 0.00 0.00 3.02
3676 4200 2.548480 CCGACTATCATCGACTAGCACA 59.452 50.000 0.00 0.00 45.13 4.57
3796 4322 2.755103 CCCTTGGTGCAGTCCTATTTTC 59.245 50.000 0.00 0.00 0.00 2.29
3937 4463 1.006086 TGACATTGCGCGGTATCTTG 58.994 50.000 8.83 0.00 0.00 3.02
4188 4721 5.670485 ACTTTGAACATCCCCTTGTTTTTC 58.330 37.500 0.00 0.00 39.85 2.29
4276 4830 2.317530 GCTTAGTTAGCCCTCAGTGG 57.682 55.000 0.00 0.00 44.48 4.00
4283 4837 3.005539 GCCCTCAGTGGCCTCAGA 61.006 66.667 3.32 1.18 46.11 3.27
4293 4893 2.596851 GGCCTCAGACTCCTTGCCA 61.597 63.158 0.00 0.00 38.73 4.92
4301 4901 1.202818 AGACTCCTTGCCACCTTTCAC 60.203 52.381 0.00 0.00 0.00 3.18
4346 4946 0.391263 GACTCCTGTACCAAAGCCCG 60.391 60.000 0.00 0.00 0.00 6.13
4348 4948 0.391263 CTCCTGTACCAAAGCCCGTC 60.391 60.000 0.00 0.00 0.00 4.79
4432 5032 0.379669 GCATTCACTCCGGAAGCATG 59.620 55.000 5.23 8.66 0.00 4.06
4613 5213 2.424956 GCTTCTGGCTTATTTGGACCTG 59.575 50.000 0.00 0.00 38.06 4.00
4693 5293 2.501492 CCCTGTAGGTCGGAATCGT 58.499 57.895 0.00 0.00 37.69 3.73
4863 5465 6.600822 AGATCATTTACATTGTTCTCCAGTGG 59.399 38.462 1.40 1.40 35.23 4.00
5008 5610 2.982470 GTGCTGCTATTGTTTGCAACTC 59.018 45.455 0.00 0.00 38.81 3.01
5061 5663 0.811616 CCCTGGTATGCAGAAGCGAC 60.812 60.000 0.00 0.00 46.23 5.19
5063 5665 1.756375 CTGGTATGCAGAAGCGACGC 61.756 60.000 13.03 13.03 46.23 5.19
5129 5731 1.133792 ACTGGTGCTAGCCTTGTTTGT 60.134 47.619 13.29 0.00 0.00 2.83
5130 5732 2.105821 ACTGGTGCTAGCCTTGTTTGTA 59.894 45.455 13.29 0.00 0.00 2.41
5131 5733 2.484264 CTGGTGCTAGCCTTGTTTGTAC 59.516 50.000 13.29 0.00 0.00 2.90
5132 5734 2.105821 TGGTGCTAGCCTTGTTTGTACT 59.894 45.455 13.29 0.00 0.00 2.73
5133 5735 2.742589 GGTGCTAGCCTTGTTTGTACTC 59.257 50.000 13.29 0.00 0.00 2.59
5134 5736 2.742589 GTGCTAGCCTTGTTTGTACTCC 59.257 50.000 13.29 0.00 0.00 3.85
5135 5737 2.290071 TGCTAGCCTTGTTTGTACTCCC 60.290 50.000 13.29 0.00 0.00 4.30
5136 5738 2.027100 GCTAGCCTTGTTTGTACTCCCT 60.027 50.000 2.29 0.00 0.00 4.20
5137 5739 2.861147 AGCCTTGTTTGTACTCCCTC 57.139 50.000 0.00 0.00 0.00 4.30
5138 5740 2.339769 AGCCTTGTTTGTACTCCCTCT 58.660 47.619 0.00 0.00 0.00 3.69
5139 5741 2.039084 AGCCTTGTTTGTACTCCCTCTG 59.961 50.000 0.00 0.00 0.00 3.35
5140 5742 2.224548 GCCTTGTTTGTACTCCCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
5141 5743 3.007614 GCCTTGTTTGTACTCCCTCTGTA 59.992 47.826 0.00 0.00 0.00 2.74
5142 5744 4.504340 GCCTTGTTTGTACTCCCTCTGTAA 60.504 45.833 0.00 0.00 0.00 2.41
5143 5745 5.617252 CCTTGTTTGTACTCCCTCTGTAAA 58.383 41.667 0.00 0.00 0.00 2.01
5144 5746 5.701290 CCTTGTTTGTACTCCCTCTGTAAAG 59.299 44.000 0.00 0.00 0.00 1.85
5145 5747 6.463897 CCTTGTTTGTACTCCCTCTGTAAAGA 60.464 42.308 0.00 0.00 0.00 2.52
5146 5748 6.488769 TGTTTGTACTCCCTCTGTAAAGAA 57.511 37.500 0.00 0.00 0.00 2.52
5147 5749 6.891388 TGTTTGTACTCCCTCTGTAAAGAAA 58.109 36.000 0.00 0.00 0.00 2.52
5148 5750 7.514721 TGTTTGTACTCCCTCTGTAAAGAAAT 58.485 34.615 0.00 0.00 0.00 2.17
5149 5751 8.653191 TGTTTGTACTCCCTCTGTAAAGAAATA 58.347 33.333 0.00 0.00 0.00 1.40
5150 5752 9.668497 GTTTGTACTCCCTCTGTAAAGAAATAT 57.332 33.333 0.00 0.00 0.00 1.28
5156 5758 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
5157 5759 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
5158 5760 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
5159 5761 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
5160 5762 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5177 5779 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
5178 5780 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
5179 5781 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
5180 5782 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
5208 5810 8.488651 AACACTCTTATATTTGTTTACGGAGG 57.511 34.615 0.00 0.00 0.00 4.30
5209 5811 7.046033 ACACTCTTATATTTGTTTACGGAGGG 58.954 38.462 0.00 0.00 0.00 4.30
5210 5812 7.093201 ACACTCTTATATTTGTTTACGGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
5211 5813 7.767198 CACTCTTATATTTGTTTACGGAGGGAA 59.233 37.037 0.00 0.00 0.00 3.97
5470 6072 1.097232 TCATCAATGAGCCAAAGCCG 58.903 50.000 0.00 0.00 41.25 5.52
5481 6083 1.305930 CCAAAGCCGGAGTAAGGTGC 61.306 60.000 5.05 0.00 0.00 5.01
5537 6139 6.348622 GCAATATCTCATCTGCCTCATCTTTG 60.349 42.308 0.00 0.00 0.00 2.77
5554 6157 6.864685 TCATCTTTGTTGCATTGAAGTTCATC 59.135 34.615 6.36 0.18 0.00 2.92
5579 6182 9.639601 TCGGAACAAATATTGCTATCACTATAG 57.360 33.333 0.00 0.00 38.53 1.31
5589 6192 4.214332 TGCTATCACTATAGAGCAGTGTCG 59.786 45.833 6.78 0.00 43.21 4.35
5603 6206 3.186909 CAGTGTCGAGTGTTGAAACTCA 58.813 45.455 5.30 0.00 45.77 3.41
5632 6235 3.688694 TCTGTTACGTTATTGGGCTGT 57.311 42.857 0.00 0.00 0.00 4.40
5741 6347 2.388735 TCACTAGTATGAGCTGGGGTG 58.611 52.381 0.00 0.00 0.00 4.61
5807 6425 1.219124 GCCTCGCTCAAGATCACCA 59.781 57.895 0.00 0.00 0.00 4.17
5840 6458 1.111277 GGAAGTTGTTGCCTGTTGGT 58.889 50.000 0.00 0.00 35.27 3.67
5947 6569 6.017357 CCTTGTCTTTAGTTTTGACTGTACCC 60.017 42.308 0.00 0.00 0.00 3.69
6025 6650 3.073678 TGTTCATTGCATGTCGTTAGCT 58.926 40.909 0.00 0.00 0.00 3.32
6027 6652 4.091424 GTTCATTGCATGTCGTTAGCTTC 58.909 43.478 0.00 0.00 0.00 3.86
6144 6769 1.466950 CCTTTTGCGGAAAGATGCGTA 59.533 47.619 12.46 0.00 46.24 4.42
6204 6829 1.138859 TGTGGGTAGGCTCATCGAATG 59.861 52.381 0.00 0.00 0.00 2.67
6301 7832 5.186409 AGCTTTAGTCCTTCGTGTATACCAA 59.814 40.000 0.00 0.00 0.00 3.67
6321 7852 5.012148 ACCAAGCTAGTAAACATCTGTGACT 59.988 40.000 0.00 4.23 0.00 3.41
6323 7854 6.393990 CAAGCTAGTAAACATCTGTGACTCT 58.606 40.000 0.00 0.00 0.00 3.24
6368 7899 1.348064 TTCCCGCAGAGAAAAGGAGA 58.652 50.000 0.00 0.00 0.00 3.71
6444 7975 2.177977 GTAGATGAGACGCTGTCAACG 58.822 52.381 10.52 0.00 34.60 4.10
6562 8102 5.741040 CAGGATCAAAGCTTAATTTCGCTTC 59.259 40.000 12.49 3.17 45.03 3.86
6567 8107 3.350219 AGCTTAATTTCGCTTCCAGGA 57.650 42.857 0.00 0.00 31.17 3.86
6574 8114 1.626356 TTCGCTTCCAGGATCAGGGG 61.626 60.000 5.57 0.00 0.00 4.79
6575 8115 2.194326 GCTTCCAGGATCAGGGGC 59.806 66.667 0.00 1.35 0.00 5.80
6592 8132 2.172679 GGGCGAAGGTTAATTTTGGGA 58.827 47.619 0.00 0.00 0.00 4.37
6603 8143 6.663523 AGGTTAATTTTGGGAAATGACTCGAT 59.336 34.615 0.00 0.00 35.69 3.59
6623 8441 0.107654 GCCTAAGATCACCCAAGCGT 60.108 55.000 0.00 0.00 0.00 5.07
6736 8578 0.606401 ACAAACGTCATGGCTGGGAG 60.606 55.000 0.00 0.00 0.00 4.30
6766 8608 1.986378 CTCTACTACAAGCACGCACAC 59.014 52.381 0.00 0.00 0.00 3.82
6776 8618 1.446099 CACGCACACTGTATCGGCT 60.446 57.895 7.61 0.00 0.00 5.52
6777 8619 1.446099 ACGCACACTGTATCGGCTG 60.446 57.895 7.61 0.00 0.00 4.85
6778 8620 2.802667 CGCACACTGTATCGGCTGC 61.803 63.158 0.00 0.00 0.00 5.25
6779 8621 2.464459 GCACACTGTATCGGCTGCC 61.464 63.158 9.11 9.11 0.00 4.85
6780 8622 1.815421 CACACTGTATCGGCTGCCC 60.815 63.158 14.12 0.00 0.00 5.36
6781 8623 2.203070 CACTGTATCGGCTGCCCC 60.203 66.667 14.12 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.846779 AAAGCAAATTCGCTACAAAGGA 57.153 36.364 0.00 0.00 42.89 3.36
60 61 9.900264 GCTAAATTTATACCAAAAGCAAATTCG 57.100 29.630 0.00 0.00 30.58 3.34
83 84 4.437682 AGCAGCTACCCATTTTATGCTA 57.562 40.909 0.00 0.00 40.52 3.49
90 91 1.928868 AGCAAAGCAGCTACCCATTT 58.071 45.000 0.00 0.00 44.50 2.32
92 93 2.806945 TAAGCAAAGCAGCTACCCAT 57.193 45.000 0.00 0.00 45.89 4.00
200 201 4.660789 AACAGAAGCAAGACAGCAAAAT 57.339 36.364 0.00 0.00 36.85 1.82
205 206 4.552166 TTTGTAACAGAAGCAAGACAGC 57.448 40.909 0.00 0.00 0.00 4.40
206 207 9.121517 CATTAATTTGTAACAGAAGCAAGACAG 57.878 33.333 0.00 0.00 0.00 3.51
315 317 0.675522 GCGCCTTAGCACAAGGGTTA 60.676 55.000 16.40 0.00 39.83 2.85
324 326 4.585526 CGGGATCGCGCCTTAGCA 62.586 66.667 19.68 0.00 39.83 3.49
391 393 5.290885 TGATAACCATTCGACATGAAGTTCG 59.709 40.000 0.00 0.00 40.65 3.95
547 549 1.586422 AGATCGGAATCACGCATTGG 58.414 50.000 0.00 0.00 34.07 3.16
551 553 3.630769 AGTTACTAGATCGGAATCACGCA 59.369 43.478 0.00 0.00 34.07 5.24
555 557 9.228949 GTCCTTATAGTTACTAGATCGGAATCA 57.771 37.037 0.00 0.00 34.07 2.57
570 572 4.751098 CGACTCGCTCTAGTCCTTATAGTT 59.249 45.833 0.00 0.00 42.46 2.24
571 573 4.039004 TCGACTCGCTCTAGTCCTTATAGT 59.961 45.833 0.00 0.00 42.46 2.12
572 574 4.558178 TCGACTCGCTCTAGTCCTTATAG 58.442 47.826 0.00 0.00 42.46 1.31
573 575 4.597404 TCGACTCGCTCTAGTCCTTATA 57.403 45.455 0.00 0.00 42.46 0.98
574 576 3.472283 TCGACTCGCTCTAGTCCTTAT 57.528 47.619 0.00 0.00 42.46 1.73
575 577 2.975732 TCGACTCGCTCTAGTCCTTA 57.024 50.000 0.00 0.00 42.46 2.69
576 578 2.011222 CTTCGACTCGCTCTAGTCCTT 58.989 52.381 0.00 0.00 42.46 3.36
577 579 1.207570 TCTTCGACTCGCTCTAGTCCT 59.792 52.381 0.00 0.00 42.46 3.85
578 580 1.654317 TCTTCGACTCGCTCTAGTCC 58.346 55.000 0.00 0.00 42.46 3.85
579 581 2.674357 ACTTCTTCGACTCGCTCTAGTC 59.326 50.000 0.00 0.00 42.09 2.59
580 582 2.417239 CACTTCTTCGACTCGCTCTAGT 59.583 50.000 0.00 0.00 0.00 2.57
581 583 2.417239 ACACTTCTTCGACTCGCTCTAG 59.583 50.000 0.00 0.00 0.00 2.43
582 584 2.159824 CACACTTCTTCGACTCGCTCTA 59.840 50.000 0.00 0.00 0.00 2.43
583 585 1.068885 CACACTTCTTCGACTCGCTCT 60.069 52.381 0.00 0.00 0.00 4.09
584 586 1.332178 CACACTTCTTCGACTCGCTC 58.668 55.000 0.00 0.00 0.00 5.03
585 587 0.669077 ACACACTTCTTCGACTCGCT 59.331 50.000 0.00 0.00 0.00 4.93
586 588 1.053811 GACACACTTCTTCGACTCGC 58.946 55.000 0.00 0.00 0.00 5.03
587 589 2.401017 TGACACACTTCTTCGACTCG 57.599 50.000 0.00 0.00 0.00 4.18
588 590 4.299155 TCAATGACACACTTCTTCGACTC 58.701 43.478 0.00 0.00 0.00 3.36
589 591 4.322080 TCAATGACACACTTCTTCGACT 57.678 40.909 0.00 0.00 0.00 4.18
590 592 4.092091 GGATCAATGACACACTTCTTCGAC 59.908 45.833 0.00 0.00 0.00 4.20
591 593 4.021104 AGGATCAATGACACACTTCTTCGA 60.021 41.667 0.00 0.00 0.00 3.71
592 594 4.248859 AGGATCAATGACACACTTCTTCG 58.751 43.478 0.00 0.00 0.00 3.79
593 595 5.123027 GGAAGGATCAATGACACACTTCTTC 59.877 44.000 13.65 5.92 34.75 2.87
594 596 5.006386 GGAAGGATCAATGACACACTTCTT 58.994 41.667 13.65 0.00 34.75 2.52
595 597 4.288105 AGGAAGGATCAATGACACACTTCT 59.712 41.667 13.65 3.22 34.75 2.85
596 598 4.583871 AGGAAGGATCAATGACACACTTC 58.416 43.478 0.00 8.55 33.87 3.01
597 599 4.042062 TGAGGAAGGATCAATGACACACTT 59.958 41.667 0.00 0.00 0.00 3.16
598 600 3.584406 TGAGGAAGGATCAATGACACACT 59.416 43.478 0.00 0.00 0.00 3.55
599 601 3.942829 TGAGGAAGGATCAATGACACAC 58.057 45.455 0.00 0.00 0.00 3.82
600 602 4.849813 ATGAGGAAGGATCAATGACACA 57.150 40.909 0.00 0.00 0.00 3.72
601 603 5.163258 ACCTATGAGGAAGGATCAATGACAC 60.163 44.000 0.00 0.00 37.67 3.67
602 604 4.971282 ACCTATGAGGAAGGATCAATGACA 59.029 41.667 0.00 0.00 37.67 3.58
603 605 5.559148 ACCTATGAGGAAGGATCAATGAC 57.441 43.478 0.00 0.00 37.67 3.06
608 610 5.538877 ACCTAAACCTATGAGGAAGGATCA 58.461 41.667 15.53 0.00 37.67 2.92
615 617 7.420029 AGAAGACTTACCTAAACCTATGAGGA 58.580 38.462 0.00 0.00 37.67 3.71
617 619 8.532819 ACAAGAAGACTTACCTAAACCTATGAG 58.467 37.037 0.00 0.00 34.70 2.90
619 621 9.804758 CTACAAGAAGACTTACCTAAACCTATG 57.195 37.037 0.00 0.00 34.70 2.23
624 626 9.838975 GTCTACTACAAGAAGACTTACCTAAAC 57.161 37.037 0.00 0.00 37.30 2.01
625 627 9.578576 TGTCTACTACAAGAAGACTTACCTAAA 57.421 33.333 3.65 0.00 40.25 1.85
675 677 2.745821 CTGGTGTGTTGATCATGTGAGG 59.254 50.000 0.00 0.00 0.00 3.86
677 679 3.667360 CTCTGGTGTGTTGATCATGTGA 58.333 45.455 0.00 0.00 0.00 3.58
686 688 1.229428 ATTGACGCTCTGGTGTGTTG 58.771 50.000 0.00 0.00 36.19 3.33
692 694 2.550830 AAGACAATTGACGCTCTGGT 57.449 45.000 13.59 0.00 0.00 4.00
779 781 5.983720 ACGAATCGTAATGGTTTATCAGAGG 59.016 40.000 6.47 0.00 38.73 3.69
802 870 5.516090 TCGTGATGGTTTAAGCTCAAAAAC 58.484 37.500 9.61 9.61 35.34 2.43
803 871 5.759506 TCGTGATGGTTTAAGCTCAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
804 872 5.957842 ATCGTGATGGTTTAAGCTCAAAA 57.042 34.783 0.00 0.00 0.00 2.44
805 873 5.390461 CGAATCGTGATGGTTTAAGCTCAAA 60.390 40.000 0.00 0.00 0.00 2.69
807 875 3.616821 CGAATCGTGATGGTTTAAGCTCA 59.383 43.478 0.00 0.00 0.00 4.26
809 877 3.596214 ACGAATCGTGATGGTTTAAGCT 58.404 40.909 7.77 0.00 39.18 3.74
810 878 5.063060 AGTTACGAATCGTGATGGTTTAAGC 59.937 40.000 19.42 0.00 41.39 3.09
811 879 6.309494 TGAGTTACGAATCGTGATGGTTTAAG 59.691 38.462 19.42 0.00 41.39 1.85
812 880 6.157904 TGAGTTACGAATCGTGATGGTTTAA 58.842 36.000 19.42 0.00 41.39 1.52
813 881 5.712004 TGAGTTACGAATCGTGATGGTTTA 58.288 37.500 19.42 0.00 41.39 2.01
814 882 4.562082 TGAGTTACGAATCGTGATGGTTT 58.438 39.130 19.42 0.00 41.39 3.27
815 883 4.182693 TGAGTTACGAATCGTGATGGTT 57.817 40.909 19.42 0.00 41.39 3.67
816 884 3.861276 TGAGTTACGAATCGTGATGGT 57.139 42.857 19.42 0.00 41.39 3.55
817 885 4.032900 CCTTTGAGTTACGAATCGTGATGG 59.967 45.833 19.42 5.45 41.39 3.51
818 886 4.862574 TCCTTTGAGTTACGAATCGTGATG 59.137 41.667 19.42 0.25 41.39 3.07
819 887 5.068234 TCCTTTGAGTTACGAATCGTGAT 57.932 39.130 19.42 3.65 41.39 3.06
820 888 4.216902 TCTCCTTTGAGTTACGAATCGTGA 59.783 41.667 19.42 7.47 39.09 4.35
821 889 4.482386 TCTCCTTTGAGTTACGAATCGTG 58.518 43.478 19.42 0.00 39.09 4.35
822 890 4.778534 TCTCCTTTGAGTTACGAATCGT 57.221 40.909 14.28 14.28 40.59 3.73
823 891 6.073980 TGTTTTCTCCTTTGAGTTACGAATCG 60.074 38.462 0.00 0.00 39.75 3.34
824 892 7.070183 GTGTTTTCTCCTTTGAGTTACGAATC 58.930 38.462 0.00 0.00 39.75 2.52
825 893 6.292703 CGTGTTTTCTCCTTTGAGTTACGAAT 60.293 38.462 0.00 0.00 39.75 3.34
826 894 5.005971 CGTGTTTTCTCCTTTGAGTTACGAA 59.994 40.000 0.00 0.00 39.75 3.85
827 895 4.505191 CGTGTTTTCTCCTTTGAGTTACGA 59.495 41.667 0.00 0.00 39.75 3.43
828 896 4.318546 CCGTGTTTTCTCCTTTGAGTTACG 60.319 45.833 0.00 0.00 39.75 3.18
829 897 4.573607 ACCGTGTTTTCTCCTTTGAGTTAC 59.426 41.667 0.00 0.00 39.75 2.50
830 898 4.773013 ACCGTGTTTTCTCCTTTGAGTTA 58.227 39.130 0.00 0.00 39.75 2.24
831 899 3.617284 ACCGTGTTTTCTCCTTTGAGTT 58.383 40.909 0.00 0.00 39.75 3.01
832 900 3.277142 ACCGTGTTTTCTCCTTTGAGT 57.723 42.857 0.00 0.00 39.75 3.41
833 901 5.744666 TTAACCGTGTTTTCTCCTTTGAG 57.255 39.130 0.00 0.00 40.17 3.02
834 902 5.823570 TCATTAACCGTGTTTTCTCCTTTGA 59.176 36.000 0.00 0.00 0.00 2.69
835 903 6.017440 TCTCATTAACCGTGTTTTCTCCTTTG 60.017 38.462 0.00 0.00 0.00 2.77
836 904 6.059484 TCTCATTAACCGTGTTTTCTCCTTT 58.941 36.000 0.00 0.00 0.00 3.11
878 946 0.677731 AATGACATGTGGGCCGAGTG 60.678 55.000 1.15 0.00 0.00 3.51
879 947 0.677731 CAATGACATGTGGGCCGAGT 60.678 55.000 1.15 0.00 0.00 4.18
880 948 1.378882 CCAATGACATGTGGGCCGAG 61.379 60.000 1.15 0.00 0.00 4.63
898 1319 1.861971 CGGAGGAAAATACGGCTACC 58.138 55.000 0.00 0.00 0.00 3.18
916 1337 7.799447 TGTTTGTCTGTTTATTATTTTCGTCCG 59.201 33.333 0.00 0.00 0.00 4.79
924 1345 7.203910 TGCGGTTTGTTTGTCTGTTTATTATT 58.796 30.769 0.00 0.00 0.00 1.40
925 1346 6.740110 TGCGGTTTGTTTGTCTGTTTATTAT 58.260 32.000 0.00 0.00 0.00 1.28
926 1347 6.132791 TGCGGTTTGTTTGTCTGTTTATTA 57.867 33.333 0.00 0.00 0.00 0.98
1047 1470 3.706373 GGCGAGTTGGAGAGGGCA 61.706 66.667 0.00 0.00 0.00 5.36
1560 1983 4.471904 AATAACTCACTGGAAGATGCGA 57.528 40.909 0.00 0.00 37.43 5.10
1627 2050 4.995124 TGACTTTATCGTACAAGCTCCTC 58.005 43.478 0.00 0.00 0.00 3.71
1641 2064 9.209175 CTACTAAAACTGAAGCACTGACTTTAT 57.791 33.333 0.00 0.00 0.00 1.40
1726 2149 0.038435 CACATTTCAATGCCGCACCA 60.038 50.000 0.00 0.00 40.04 4.17
1729 2152 2.808523 TTTCACATTTCAATGCCGCA 57.191 40.000 0.00 0.00 40.04 5.69
1764 2187 8.579850 TCTGCCAACTGAATTAGTAAAATCAT 57.420 30.769 3.12 0.00 39.18 2.45
1818 2241 8.814038 ATCTAAAGGATATTGTCAACAAAGCT 57.186 30.769 0.00 0.00 39.55 3.74
1882 2307 5.620738 ACAGGTCATGTCATAGCTAACAT 57.379 39.130 5.40 5.40 37.75 2.71
1963 2388 7.551585 ACTCCTACCATCATTTATGATCGATC 58.448 38.462 18.72 18.72 45.23 3.69
1988 2413 9.838339 TGCCCTTATTAAAGTTTCAATTTGAAA 57.162 25.926 18.29 18.29 43.37 2.69
2224 2652 6.363065 TCCAAAGATAGTGACTACGGAGTAT 58.637 40.000 0.00 0.00 44.56 2.12
2246 2674 8.281893 CCATTTGTTCACAACATGTAAAATTCC 58.718 33.333 0.00 0.00 41.79 3.01
2424 2852 4.516698 CACATGCATTCTACACCCCTATTC 59.483 45.833 0.00 0.00 0.00 1.75
2609 3046 1.897133 AGCTGCAATGCAAGATTTGGA 59.103 42.857 9.92 0.00 38.41 3.53
2621 3058 1.878088 CACTGTCAACTGAGCTGCAAT 59.122 47.619 1.02 0.00 0.00 3.56
2662 3099 2.837498 TGCCACATCAGATATGAACCG 58.163 47.619 0.00 0.00 0.00 4.44
2664 3101 6.694411 GTCATTTTGCCACATCAGATATGAAC 59.306 38.462 0.00 0.00 0.00 3.18
2758 3257 3.199071 GGGTGCGGGATGATATATTGGTA 59.801 47.826 0.00 0.00 0.00 3.25
2792 3291 3.134574 ACAGTTCAACCGCATTCCTAA 57.865 42.857 0.00 0.00 0.00 2.69
2795 3294 3.907894 TTAACAGTTCAACCGCATTCC 57.092 42.857 0.00 0.00 0.00 3.01
2798 3297 5.182950 TGATGAATTAACAGTTCAACCGCAT 59.817 36.000 0.00 0.00 38.89 4.73
2965 3472 3.254166 CCAAAAGAACTGGTCATGGACAG 59.746 47.826 13.70 13.70 33.68 3.51
2966 3473 3.221771 CCAAAAGAACTGGTCATGGACA 58.778 45.455 6.40 0.00 33.68 4.02
2976 3483 6.127897 GGACTGGAATATCACCAAAAGAACTG 60.128 42.308 3.72 0.00 36.95 3.16
2982 3489 4.941263 CGAAGGACTGGAATATCACCAAAA 59.059 41.667 3.72 0.00 36.95 2.44
3019 3526 2.334006 ACTTGACATGGGAGGAGTCT 57.666 50.000 0.00 0.00 33.56 3.24
3042 3549 3.269592 TCAAGAGAGGTTGGGGTAGAA 57.730 47.619 0.00 0.00 0.00 2.10
3063 3570 5.291614 GGACGGCTAAAACGTGTTGATAATA 59.708 40.000 0.00 0.00 45.68 0.98
3139 3646 4.894784 AGAAGCTTGTCCAAAATCGTCTA 58.105 39.130 2.10 0.00 0.00 2.59
3243 3751 1.028330 AGTGGAGATGCGCATGTTGG 61.028 55.000 30.76 0.00 0.00 3.77
3271 3779 4.674362 GCCAACTAAAAGGCGGTTCAATAG 60.674 45.833 0.00 0.00 41.70 1.73
3272 3780 3.191791 GCCAACTAAAAGGCGGTTCAATA 59.808 43.478 0.00 0.00 41.70 1.90
3273 3781 2.029380 GCCAACTAAAAGGCGGTTCAAT 60.029 45.455 0.00 0.00 41.70 2.57
3274 3782 1.338655 GCCAACTAAAAGGCGGTTCAA 59.661 47.619 0.00 0.00 41.70 2.69
3276 3784 3.786809 GCCAACTAAAAGGCGGTTC 57.213 52.632 0.00 0.00 41.70 3.62
3320 3833 4.137872 GGACGGCGATTCGACCCA 62.138 66.667 16.62 0.00 38.61 4.51
3385 3898 2.035066 GCAGAGCTTTTTGGCTTTCTCA 59.965 45.455 0.00 0.00 43.20 3.27
3403 3916 2.434884 ACGGATGAAGTGGCGCAG 60.435 61.111 10.83 0.00 0.00 5.18
3404 3917 2.434185 GACGGATGAAGTGGCGCA 60.434 61.111 10.83 0.00 0.00 6.09
3485 3998 5.432885 TCAAAAGAACACCTTCCGAAATC 57.567 39.130 0.00 0.00 33.02 2.17
3492 4005 4.275196 GTGGTACCTCAAAAGAACACCTTC 59.725 45.833 14.36 0.00 33.02 3.46
3594 4113 5.220796 CCTTGTTATCGGTTTTAGGCTTAGC 60.221 44.000 0.00 0.00 0.00 3.09
3676 4200 1.825090 TGCTCTTTGCGGATGATGTT 58.175 45.000 0.00 0.00 46.63 2.71
3796 4322 3.126514 GCAACACTGATGACTTCCTGATG 59.873 47.826 0.00 0.00 0.00 3.07
3937 4463 6.349300 TCATTGACTTAAGAAGGCCTATGAC 58.651 40.000 5.16 0.00 34.86 3.06
4028 4556 1.003118 CTTGGAGGTCGACCATGGAAA 59.997 52.381 35.00 19.58 37.26 3.13
4188 4721 7.441458 GGCTGGAGTATATTAGTACCAAACTTG 59.559 40.741 0.00 0.00 39.80 3.16
4192 4744 7.626999 ATGGCTGGAGTATATTAGTACCAAA 57.373 36.000 0.00 0.00 0.00 3.28
4269 4823 0.614415 AGGAGTCTGAGGCCACTGAG 60.614 60.000 5.01 0.00 0.00 3.35
4271 4825 0.036577 CAAGGAGTCTGAGGCCACTG 60.037 60.000 5.01 2.33 0.00 3.66
4272 4826 1.835927 GCAAGGAGTCTGAGGCCACT 61.836 60.000 5.01 0.00 0.00 4.00
4273 4827 1.376553 GCAAGGAGTCTGAGGCCAC 60.377 63.158 5.01 0.00 0.00 5.01
4274 4828 2.596851 GGCAAGGAGTCTGAGGCCA 61.597 63.158 5.01 0.00 41.02 5.36
4275 4829 2.270527 GGCAAGGAGTCTGAGGCC 59.729 66.667 0.00 0.00 0.00 5.19
4276 4830 1.376553 GTGGCAAGGAGTCTGAGGC 60.377 63.158 0.00 0.00 0.00 4.70
4277 4831 1.197430 AGGTGGCAAGGAGTCTGAGG 61.197 60.000 0.00 0.00 0.00 3.86
4280 4834 1.202806 TGAAAGGTGGCAAGGAGTCTG 60.203 52.381 0.00 0.00 0.00 3.51
4281 4835 1.140312 TGAAAGGTGGCAAGGAGTCT 58.860 50.000 0.00 0.00 0.00 3.24
4283 4837 0.178990 GGTGAAAGGTGGCAAGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
4293 4893 4.295201 AGGCTTTAAAAAGGGTGAAAGGT 58.705 39.130 4.71 0.00 36.53 3.50
4301 4901 2.826128 GTCAGGGAGGCTTTAAAAAGGG 59.174 50.000 4.71 0.00 36.53 3.95
4346 4946 2.941453 TTGGTCTGAGACATAGCGAC 57.059 50.000 15.33 0.00 33.68 5.19
4348 4948 1.929836 GCTTTGGTCTGAGACATAGCG 59.070 52.381 15.33 0.00 33.68 4.26
4632 5232 2.573915 ACAAAAAGGCTGGGTTTGGAAA 59.426 40.909 17.67 0.00 36.72 3.13
4693 5293 6.472016 TCATATGTTTCAGCTAGGTCAACAA 58.528 36.000 16.40 9.18 31.39 2.83
4863 5465 4.918810 ATTCAAACAAAGGTGACTGGAC 57.081 40.909 0.00 0.00 42.68 4.02
4932 5534 6.128254 GGTTAGGATCAGTGCTTACAAGAAAC 60.128 42.308 0.00 0.00 28.35 2.78
4939 5541 4.162509 AGAAGGGTTAGGATCAGTGCTTAC 59.837 45.833 0.00 0.00 0.00 2.34
5061 5663 6.893995 CAGGCAATTAAAAATTAAACATCGCG 59.106 34.615 0.00 0.00 0.00 5.87
5063 5665 7.899330 CAGCAGGCAATTAAAAATTAAACATCG 59.101 33.333 0.00 0.00 0.00 3.84
5130 5732 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
5131 5733 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
5132 5734 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
5133 5735 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
5134 5736 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
5151 5753 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
5152 5754 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
5153 5755 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
5154 5756 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
5155 5757 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
5182 5784 8.943002 CCTCCGTAAACAAATATAAGAGTGTTT 58.057 33.333 5.98 5.98 44.23 2.83
5183 5785 7.551617 CCCTCCGTAAACAAATATAAGAGTGTT 59.448 37.037 0.00 0.00 35.77 3.32
5184 5786 7.046033 CCCTCCGTAAACAAATATAAGAGTGT 58.954 38.462 0.00 0.00 0.00 3.55
5185 5787 7.270047 TCCCTCCGTAAACAAATATAAGAGTG 58.730 38.462 0.00 0.00 0.00 3.51
5186 5788 7.427989 TCCCTCCGTAAACAAATATAAGAGT 57.572 36.000 0.00 0.00 0.00 3.24
5187 5789 8.904099 ATTCCCTCCGTAAACAAATATAAGAG 57.096 34.615 0.00 0.00 0.00 2.85
5188 5790 9.768662 GTATTCCCTCCGTAAACAAATATAAGA 57.231 33.333 0.00 0.00 0.00 2.10
5189 5791 9.550406 TGTATTCCCTCCGTAAACAAATATAAG 57.450 33.333 0.00 0.00 0.00 1.73
5191 5793 9.496873 CATGTATTCCCTCCGTAAACAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
5192 5794 8.215050 TCATGTATTCCCTCCGTAAACAAATAT 58.785 33.333 0.00 0.00 0.00 1.28
5193 5795 7.566569 TCATGTATTCCCTCCGTAAACAAATA 58.433 34.615 0.00 0.00 0.00 1.40
5194 5796 6.419791 TCATGTATTCCCTCCGTAAACAAAT 58.580 36.000 0.00 0.00 0.00 2.32
5195 5797 5.806818 TCATGTATTCCCTCCGTAAACAAA 58.193 37.500 0.00 0.00 0.00 2.83
5196 5798 5.423704 TCATGTATTCCCTCCGTAAACAA 57.576 39.130 0.00 0.00 0.00 2.83
5197 5799 5.623956 ATCATGTATTCCCTCCGTAAACA 57.376 39.130 0.00 0.00 0.00 2.83
5198 5800 9.148104 GTATTATCATGTATTCCCTCCGTAAAC 57.852 37.037 0.00 0.00 0.00 2.01
5199 5801 9.096823 AGTATTATCATGTATTCCCTCCGTAAA 57.903 33.333 0.00 0.00 0.00 2.01
5200 5802 8.660295 AGTATTATCATGTATTCCCTCCGTAA 57.340 34.615 0.00 0.00 0.00 3.18
5201 5803 9.758021 TTAGTATTATCATGTATTCCCTCCGTA 57.242 33.333 0.00 0.00 0.00 4.02
5202 5804 8.529476 GTTAGTATTATCATGTATTCCCTCCGT 58.471 37.037 0.00 0.00 0.00 4.69
5203 5805 8.528643 TGTTAGTATTATCATGTATTCCCTCCG 58.471 37.037 0.00 0.00 0.00 4.63
5522 6124 2.799017 TGCAACAAAGATGAGGCAGAT 58.201 42.857 0.00 0.00 35.40 2.90
5537 6139 3.829886 TCCGATGAACTTCAATGCAAC 57.170 42.857 0.00 0.00 0.00 4.17
5554 6157 9.639601 TCTATAGTGATAGCAATATTTGTTCCG 57.360 33.333 6.23 0.00 36.72 4.30
5560 6163 9.650539 CACTGCTCTATAGTGATAGCAATATTT 57.349 33.333 6.23 0.00 46.52 1.40
5579 6182 1.852942 TTCAACACTCGACACTGCTC 58.147 50.000 0.00 0.00 0.00 4.26
5581 6184 1.933853 AGTTTCAACACTCGACACTGC 59.066 47.619 0.00 0.00 0.00 4.40
5589 6192 3.313526 ACACATGCTGAGTTTCAACACTC 59.686 43.478 0.00 0.00 43.23 3.51
5603 6206 5.106712 CCAATAACGTAACAGAACACATGCT 60.107 40.000 0.00 0.00 0.00 3.79
5741 6347 4.759782 ACTGTACATCAACACTATGAGGC 58.240 43.478 0.00 0.00 34.59 4.70
5807 6425 1.215647 CTTCCGCAGTCGCCTTACT 59.784 57.895 0.00 0.00 33.11 2.24
5840 6458 4.338795 ACTCTCAATCCTCTGGGTTCTA 57.661 45.455 0.00 0.00 0.00 2.10
5947 6569 1.273327 GCATCCTCCAAAACACCAAGG 59.727 52.381 0.00 0.00 0.00 3.61
5953 6575 6.487668 CACTATCATATGCATCCTCCAAAACA 59.512 38.462 0.19 0.00 0.00 2.83
6025 6650 4.812476 CGGCGGCGGATCACAGAA 62.812 66.667 25.36 0.00 0.00 3.02
6027 6652 3.499929 ATACGGCGGCGGATCACAG 62.500 63.158 35.05 5.43 0.00 3.66
6122 6747 1.133025 CGCATCTTTCCGCAAAAGGAT 59.867 47.619 8.30 0.00 43.88 3.24
6123 6748 0.521291 CGCATCTTTCCGCAAAAGGA 59.479 50.000 8.30 0.00 43.88 3.36
6124 6749 0.240945 ACGCATCTTTCCGCAAAAGG 59.759 50.000 8.30 0.00 43.88 3.11
6131 6756 3.616821 TCTGAAATGTACGCATCTTTCCG 59.383 43.478 0.00 0.00 33.50 4.30
6144 6769 9.768662 AGCAAGAAAAATGTTTATCTGAAATGT 57.231 25.926 0.00 0.00 0.00 2.71
6204 6829 3.134127 GGAAGCCACGGCATCACC 61.134 66.667 14.67 6.40 44.88 4.02
6301 7832 5.712446 TCAGAGTCACAGATGTTTACTAGCT 59.288 40.000 0.00 0.00 0.00 3.32
6321 7852 2.727777 CGACAGTTTCGTTGTCTCAGA 58.272 47.619 4.16 0.00 43.24 3.27
6412 7943 7.478978 CAGCGTCTCATCTACGTACAATAATAG 59.521 40.741 0.00 0.00 42.26 1.73
6417 7948 3.377485 ACAGCGTCTCATCTACGTACAAT 59.623 43.478 0.00 0.00 42.26 2.71
6418 7949 2.745821 ACAGCGTCTCATCTACGTACAA 59.254 45.455 0.00 0.00 42.26 2.41
6419 7950 2.350804 GACAGCGTCTCATCTACGTACA 59.649 50.000 0.00 0.00 42.26 2.90
6420 7951 2.350804 TGACAGCGTCTCATCTACGTAC 59.649 50.000 9.49 0.00 42.26 3.67
6421 7952 2.624636 TGACAGCGTCTCATCTACGTA 58.375 47.619 9.49 0.00 42.26 3.57
6422 7953 1.450025 TGACAGCGTCTCATCTACGT 58.550 50.000 9.49 0.00 42.26 3.57
6423 7954 2.177977 GTTGACAGCGTCTCATCTACG 58.822 52.381 9.49 0.00 43.12 3.51
6444 7975 5.873712 CAGATGGGAATGAGCATACATCTAC 59.126 44.000 17.28 1.41 42.05 2.59
6526 8065 1.227002 GATCCTGAACCGCCGAGAC 60.227 63.158 0.00 0.00 0.00 3.36
6562 8102 2.507944 CTTCGCCCCTGATCCTGG 59.492 66.667 0.00 0.00 0.00 4.45
6567 8107 3.382083 AAATTAACCTTCGCCCCTGAT 57.618 42.857 0.00 0.00 0.00 2.90
6574 8114 5.347635 GTCATTTCCCAAAATTAACCTTCGC 59.652 40.000 0.00 0.00 32.69 4.70
6575 8115 6.687604 AGTCATTTCCCAAAATTAACCTTCG 58.312 36.000 0.00 0.00 32.69 3.79
6592 8132 5.053145 GTGATCTTAGGCATCGAGTCATTT 58.947 41.667 0.00 0.00 0.00 2.32
6603 8143 0.107703 CGCTTGGGTGATCTTAGGCA 60.108 55.000 0.00 0.00 0.00 4.75
6623 8441 1.887344 TATGCAGCCTGCTGACGTCA 61.887 55.000 22.64 18.88 46.30 4.35
6687 8529 4.734108 GCCTTGGCGTGTACTTAAAACAAA 60.734 41.667 0.00 0.00 0.00 2.83
6736 8578 4.142359 TGCTTGTAGTAGAGCTAGCTTGTC 60.142 45.833 20.42 11.77 39.60 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.