Multiple sequence alignment - TraesCS3D01G305600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G305600 chr3D 100.000 3856 0 0 1 3856 419589899 419586044 0.000000e+00 7121.0
1 TraesCS3D01G305600 chr3D 90.647 139 11 2 3719 3856 459885623 459885486 2.370000e-42 183.0
2 TraesCS3D01G305600 chr3D 91.262 103 7 1 1 103 263804187 263804087 5.190000e-29 139.0
3 TraesCS3D01G305600 chr3D 90.291 103 8 2 1 103 33135048 33134948 2.420000e-27 134.0
4 TraesCS3D01G305600 chr3D 91.837 49 3 1 3636 3684 419580842 419580795 2.490000e-07 67.6
5 TraesCS3D01G305600 chr3A 93.195 2219 89 21 950 3144 531629430 531631610 0.000000e+00 3205.0
6 TraesCS3D01G305600 chr3A 93.902 246 15 0 3470 3715 531631994 531632239 4.700000e-99 372.0
7 TraesCS3D01G305600 chr3A 91.803 183 10 3 551 732 531627100 531627278 2.300000e-62 250.0
8 TraesCS3D01G305600 chr3A 87.215 219 15 2 3314 3519 531631764 531631982 1.790000e-58 237.0
9 TraesCS3D01G305600 chr3A 90.441 136 13 0 3721 3856 643158429 643158564 3.060000e-41 180.0
10 TraesCS3D01G305600 chr3A 94.118 102 6 0 216 317 531626777 531626878 5.160000e-34 156.0
11 TraesCS3D01G305600 chr3A 83.200 125 9 2 761 885 531627540 531627652 1.890000e-18 104.0
12 TraesCS3D01G305600 chr3A 92.000 50 3 1 3636 3685 531632293 531632341 6.910000e-08 69.4
13 TraesCS3D01G305600 chr3B 90.668 2454 140 40 592 3028 545805524 545807905 0.000000e+00 3181.0
14 TraesCS3D01G305600 chr3B 87.097 403 25 13 3320 3715 545807942 545808324 7.650000e-117 431.0
15 TraesCS3D01G305600 chr3B 92.000 50 3 1 3636 3685 545808374 545808422 6.910000e-08 69.4
16 TraesCS3D01G305600 chr3B 83.099 71 11 1 376 445 730786813 730786743 3.220000e-06 63.9
17 TraesCS3D01G305600 chr1D 88.537 1483 168 2 1229 2710 14719183 14717702 0.000000e+00 1796.0
18 TraesCS3D01G305600 chr1D 89.655 145 13 2 3713 3856 11356659 11356802 2.370000e-42 183.0
19 TraesCS3D01G305600 chr1D 89.041 146 14 2 3712 3856 156282962 156283106 3.060000e-41 180.0
20 TraesCS3D01G305600 chr1D 90.385 104 7 1 1 104 415486957 415487057 2.420000e-27 134.0
21 TraesCS3D01G305600 chr1A 88.027 1495 179 0 1218 2712 15324701 15326195 0.000000e+00 1770.0
22 TraesCS3D01G305600 chrUn 84.712 1511 217 10 1218 2716 289483399 289484907 0.000000e+00 1498.0
23 TraesCS3D01G305600 chrUn 84.712 1511 217 10 1218 2716 296679646 296681154 0.000000e+00 1498.0
24 TraesCS3D01G305600 chrUn 81.003 658 61 36 592 1233 267218803 267219412 7.550000e-127 464.0
25 TraesCS3D01G305600 chr4D 84.761 1483 210 15 1238 2707 506852996 506854475 0.000000e+00 1472.0
26 TraesCS3D01G305600 chr4D 79.310 145 25 4 398 539 28840276 28840134 3.170000e-16 97.1
27 TraesCS3D01G305600 chr2B 83.114 1445 239 5 1234 2676 787528742 787527301 0.000000e+00 1312.0
28 TraesCS3D01G305600 chr2B 89.655 58 6 0 385 442 669198300 669198357 1.490000e-09 75.0
29 TraesCS3D01G305600 chr4B 84.627 1314 187 14 1390 2693 664357594 664356286 0.000000e+00 1293.0
30 TraesCS3D01G305600 chr5A 98.026 152 3 0 3705 3856 618958171 618958020 8.210000e-67 265.0
31 TraesCS3D01G305600 chr5A 92.233 103 6 1 1 103 457088120 457088220 1.120000e-30 145.0
32 TraesCS3D01G305600 chr1B 96.154 130 5 0 3721 3850 631954298 631954169 3.020000e-51 213.0
33 TraesCS3D01G305600 chr1B 91.346 104 7 1 1 104 306592597 306592496 1.440000e-29 141.0
34 TraesCS3D01G305600 chr1B 90.291 103 9 1 1 103 41698307 41698408 2.420000e-27 134.0
35 TraesCS3D01G305600 chr1B 94.118 51 3 0 411 461 288052069 288052119 1.150000e-10 78.7
36 TraesCS3D01G305600 chr6A 90.441 136 11 2 3710 3845 126917527 126917660 1.100000e-40 178.0
37 TraesCS3D01G305600 chr6A 91.262 103 8 1 1 103 442032933 442032832 5.190000e-29 139.0
38 TraesCS3D01G305600 chr5B 89.130 138 14 1 3714 3851 436236468 436236332 1.840000e-38 171.0
39 TraesCS3D01G305600 chr5B 83.333 108 14 2 386 489 327610098 327609991 3.170000e-16 97.1
40 TraesCS3D01G305600 chr4A 89.683 126 13 0 3720 3845 446769907 446769782 1.110000e-35 161.0
41 TraesCS3D01G305600 chr2D 90.291 103 10 0 1 103 368697045 368697147 6.720000e-28 135.0
42 TraesCS3D01G305600 chr5D 90.385 104 7 2 1 104 447504554 447504654 2.420000e-27 134.0
43 TraesCS3D01G305600 chr5D 79.268 164 28 4 386 545 357397642 357397481 4.070000e-20 110.0
44 TraesCS3D01G305600 chr2A 81.250 144 21 4 385 522 751762820 751762677 1.130000e-20 111.0
45 TraesCS3D01G305600 chr6B 80.488 123 13 6 405 521 720960010 720960127 2.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G305600 chr3D 419586044 419589899 3855 True 7121.000000 7121 100.000000 1 3856 1 chr3D.!!$R4 3855
1 TraesCS3D01G305600 chr3A 531626777 531632341 5564 False 627.628571 3205 90.776143 216 3715 7 chr3A.!!$F2 3499
2 TraesCS3D01G305600 chr3B 545805524 545808422 2898 False 1227.133333 3181 89.921667 592 3715 3 chr3B.!!$F1 3123
3 TraesCS3D01G305600 chr1D 14717702 14719183 1481 True 1796.000000 1796 88.537000 1229 2710 1 chr1D.!!$R1 1481
4 TraesCS3D01G305600 chr1A 15324701 15326195 1494 False 1770.000000 1770 88.027000 1218 2712 1 chr1A.!!$F1 1494
5 TraesCS3D01G305600 chrUn 289483399 289484907 1508 False 1498.000000 1498 84.712000 1218 2716 1 chrUn.!!$F2 1498
6 TraesCS3D01G305600 chrUn 296679646 296681154 1508 False 1498.000000 1498 84.712000 1218 2716 1 chrUn.!!$F3 1498
7 TraesCS3D01G305600 chrUn 267218803 267219412 609 False 464.000000 464 81.003000 592 1233 1 chrUn.!!$F1 641
8 TraesCS3D01G305600 chr4D 506852996 506854475 1479 False 1472.000000 1472 84.761000 1238 2707 1 chr4D.!!$F1 1469
9 TraesCS3D01G305600 chr2B 787527301 787528742 1441 True 1312.000000 1312 83.114000 1234 2676 1 chr2B.!!$R1 1442
10 TraesCS3D01G305600 chr4B 664356286 664357594 1308 True 1293.000000 1293 84.627000 1390 2693 1 chr4B.!!$R1 1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 616 0.296056 GTCGAGCGAGAAAAGCATCG 59.704 55.0 0.00 0.0 41.79 3.84 F
1127 3155 0.106708 GAGCGCATCTCCCCACATTA 59.893 55.0 11.47 0.0 35.77 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 4334 2.437359 AGCCACATCTTGAGCGCC 60.437 61.111 2.29 0.0 0.0 6.53 R
3068 5123 0.179100 CATCACCAGCGACGAGGATT 60.179 55.000 12.91 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
67 68 5.599359 TTTCGATTTTACTGTTCATGCGA 57.401 34.783 0.00 0.00 0.00 5.10
68 69 5.599359 TTCGATTTTACTGTTCATGCGAA 57.401 34.783 0.00 0.00 33.55 4.70
69 70 5.599359 TCGATTTTACTGTTCATGCGAAA 57.401 34.783 0.00 0.00 31.43 3.46
70 71 5.617609 TCGATTTTACTGTTCATGCGAAAG 58.382 37.500 0.00 0.00 31.43 2.62
84 85 1.143305 CGAAAGCATATGAGCTCGGG 58.857 55.000 9.64 0.00 45.89 5.14
85 86 1.539065 CGAAAGCATATGAGCTCGGGT 60.539 52.381 9.64 1.27 45.89 5.28
86 87 1.869767 GAAAGCATATGAGCTCGGGTG 59.130 52.381 9.64 8.35 45.89 4.61
87 88 0.533755 AAGCATATGAGCTCGGGTGC 60.534 55.000 22.13 22.13 45.89 5.01
88 89 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
89 90 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
90 91 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
91 92 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
92 93 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
93 94 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
94 95 1.817099 GAGCTCGGGTGCAGAATGG 60.817 63.158 0.00 0.00 35.86 3.16
95 96 2.244117 GAGCTCGGGTGCAGAATGGA 62.244 60.000 0.00 0.00 35.86 3.41
105 106 2.426522 TGCAGAATGGACTTTTCGAGG 58.573 47.619 0.00 0.00 35.86 4.63
106 107 1.740025 GCAGAATGGACTTTTCGAGGG 59.260 52.381 0.00 0.00 35.86 4.30
107 108 2.876079 GCAGAATGGACTTTTCGAGGGT 60.876 50.000 0.00 0.00 35.86 4.34
108 109 3.618997 GCAGAATGGACTTTTCGAGGGTA 60.619 47.826 0.00 0.00 35.86 3.69
109 110 4.184629 CAGAATGGACTTTTCGAGGGTAG 58.815 47.826 0.00 0.00 0.00 3.18
110 111 4.081642 CAGAATGGACTTTTCGAGGGTAGA 60.082 45.833 0.00 0.00 0.00 2.59
111 112 4.160626 AGAATGGACTTTTCGAGGGTAGAG 59.839 45.833 0.00 0.00 0.00 2.43
112 113 3.165087 TGGACTTTTCGAGGGTAGAGA 57.835 47.619 0.00 0.00 0.00 3.10
113 114 2.824341 TGGACTTTTCGAGGGTAGAGAC 59.176 50.000 0.00 0.00 0.00 3.36
114 115 2.166050 GGACTTTTCGAGGGTAGAGACC 59.834 54.545 0.00 0.00 46.13 3.85
115 116 3.090790 GACTTTTCGAGGGTAGAGACCT 58.909 50.000 0.00 0.00 46.09 3.85
116 117 3.508426 ACTTTTCGAGGGTAGAGACCTT 58.492 45.455 0.00 0.00 46.09 3.50
117 118 3.902467 ACTTTTCGAGGGTAGAGACCTTT 59.098 43.478 0.00 0.00 46.09 3.11
118 119 4.347292 ACTTTTCGAGGGTAGAGACCTTTT 59.653 41.667 0.00 0.00 46.09 2.27
119 120 4.968971 TTTCGAGGGTAGAGACCTTTTT 57.031 40.909 0.00 0.00 46.09 1.94
200 201 8.062231 CAGTTCGTTATAAACTGCAGTATAGG 57.938 38.462 22.01 10.78 44.94 2.57
201 202 6.700520 AGTTCGTTATAAACTGCAGTATAGGC 59.299 38.462 22.01 10.59 35.68 3.93
202 203 6.151663 TCGTTATAAACTGCAGTATAGGCA 57.848 37.500 22.01 2.10 39.32 4.75
203 204 6.755206 TCGTTATAAACTGCAGTATAGGCAT 58.245 36.000 22.01 9.49 41.06 4.40
204 205 6.866770 TCGTTATAAACTGCAGTATAGGCATC 59.133 38.462 22.01 6.31 41.06 3.91
205 206 6.090898 CGTTATAAACTGCAGTATAGGCATCC 59.909 42.308 22.01 2.24 41.06 3.51
206 207 5.832539 ATAAACTGCAGTATAGGCATCCT 57.167 39.130 22.01 0.00 41.06 3.24
207 208 6.935240 ATAAACTGCAGTATAGGCATCCTA 57.065 37.500 22.01 0.00 41.06 2.94
208 209 5.630415 AAACTGCAGTATAGGCATCCTAA 57.370 39.130 22.01 0.00 39.77 2.69
209 210 5.630415 AACTGCAGTATAGGCATCCTAAA 57.370 39.130 22.01 0.00 39.77 1.85
210 211 5.630415 ACTGCAGTATAGGCATCCTAAAA 57.370 39.130 20.16 0.00 39.77 1.52
211 212 5.615289 ACTGCAGTATAGGCATCCTAAAAG 58.385 41.667 20.16 0.00 39.77 2.27
212 213 4.973168 TGCAGTATAGGCATCCTAAAAGG 58.027 43.478 0.00 0.00 39.77 3.11
213 214 4.202461 TGCAGTATAGGCATCCTAAAAGGG 60.202 45.833 0.00 0.00 39.77 3.95
214 215 4.202472 GCAGTATAGGCATCCTAAAAGGGT 60.202 45.833 0.00 0.00 39.77 4.34
227 228 2.990740 AAAGGGTCCTAATGGTGCAA 57.009 45.000 0.00 0.00 34.23 4.08
233 234 5.528337 AGGGTCCTAATGGTGCAATTTTAT 58.472 37.500 0.00 0.00 34.23 1.40
258 259 6.467723 AAGTATGTAACAGCTCAGTTTTCG 57.532 37.500 0.00 0.00 33.07 3.46
263 264 5.117584 TGTAACAGCTCAGTTTTCGGTAAA 58.882 37.500 0.00 0.00 33.07 2.01
309 310 8.888579 TCATCGATTAAGGGTAAGAATTTCTC 57.111 34.615 0.00 0.00 0.00 2.87
310 311 7.652105 TCATCGATTAAGGGTAAGAATTTCTCG 59.348 37.037 0.00 0.00 0.00 4.04
318 331 5.127356 AGGGTAAGAATTTCTCGATCGAACT 59.873 40.000 19.92 8.65 0.00 3.01
353 370 6.675026 TGCATCATCAAGCATAAGAATTAGC 58.325 36.000 0.00 0.00 35.51 3.09
355 372 6.294342 GCATCATCAAGCATAAGAATTAGCCA 60.294 38.462 0.00 0.00 31.76 4.75
356 373 7.654568 CATCATCAAGCATAAGAATTAGCCAA 58.345 34.615 0.00 0.00 31.76 4.52
357 374 7.031226 TCATCAAGCATAAGAATTAGCCAAC 57.969 36.000 0.00 0.00 31.76 3.77
358 375 6.602803 TCATCAAGCATAAGAATTAGCCAACA 59.397 34.615 0.00 0.00 31.76 3.33
392 455 9.780186 TTAAACATAAAAATTTGGGTGGTTAGG 57.220 29.630 0.00 0.00 0.00 2.69
393 456 7.381789 AACATAAAAATTTGGGTGGTTAGGT 57.618 32.000 0.00 0.00 0.00 3.08
394 457 6.999950 ACATAAAAATTTGGGTGGTTAGGTC 58.000 36.000 0.00 0.00 0.00 3.85
395 458 6.785466 ACATAAAAATTTGGGTGGTTAGGTCT 59.215 34.615 0.00 0.00 0.00 3.85
396 459 7.291416 ACATAAAAATTTGGGTGGTTAGGTCTT 59.709 33.333 0.00 0.00 0.00 3.01
397 460 8.808092 CATAAAAATTTGGGTGGTTAGGTCTTA 58.192 33.333 0.00 0.00 0.00 2.10
398 461 6.911250 AAAATTTGGGTGGTTAGGTCTTAG 57.089 37.500 0.00 0.00 0.00 2.18
401 464 2.173519 TGGGTGGTTAGGTCTTAGTCG 58.826 52.381 0.00 0.00 0.00 4.18
403 466 2.165234 GGGTGGTTAGGTCTTAGTCGAC 59.835 54.545 7.70 7.70 0.00 4.20
409 472 5.479375 TGGTTAGGTCTTAGTCGACTGAAAT 59.521 40.000 28.12 11.39 34.38 2.17
410 473 6.014840 TGGTTAGGTCTTAGTCGACTGAAATT 60.015 38.462 28.12 11.23 34.38 1.82
411 474 6.872547 GGTTAGGTCTTAGTCGACTGAAATTT 59.127 38.462 28.12 11.72 34.38 1.82
420 483 9.959775 CTTAGTCGACTGAAATTTAATCAAGTC 57.040 33.333 28.12 0.00 0.00 3.01
423 486 7.872993 AGTCGACTGAAATTTAATCAAGTCTCA 59.127 33.333 19.30 0.00 0.00 3.27
425 488 9.219603 TCGACTGAAATTTAATCAAGTCTCAAT 57.780 29.630 10.65 0.00 0.00 2.57
434 497 8.675705 TTTAATCAAGTCTCAATCAAGTGACA 57.324 30.769 0.00 0.00 35.17 3.58
435 498 8.853077 TTAATCAAGTCTCAATCAAGTGACAT 57.147 30.769 0.00 0.00 35.17 3.06
437 500 8.853077 AATCAAGTCTCAATCAAGTGACATAA 57.147 30.769 0.00 0.00 35.17 1.90
439 502 7.216494 TCAAGTCTCAATCAAGTGACATAACA 58.784 34.615 0.00 0.00 35.17 2.41
440 503 7.879677 TCAAGTCTCAATCAAGTGACATAACAT 59.120 33.333 0.00 0.00 35.17 2.71
441 504 9.154847 CAAGTCTCAATCAAGTGACATAACATA 57.845 33.333 0.00 0.00 35.17 2.29
442 505 8.709386 AGTCTCAATCAAGTGACATAACATAC 57.291 34.615 0.00 0.00 35.17 2.39
443 506 8.314021 AGTCTCAATCAAGTGACATAACATACA 58.686 33.333 0.00 0.00 35.17 2.29
444 507 8.935844 GTCTCAATCAAGTGACATAACATACAA 58.064 33.333 0.00 0.00 33.47 2.41
445 508 9.154847 TCTCAATCAAGTGACATAACATACAAG 57.845 33.333 0.00 0.00 0.00 3.16
446 509 9.154847 CTCAATCAAGTGACATAACATACAAGA 57.845 33.333 0.00 0.00 0.00 3.02
447 510 9.154847 TCAATCAAGTGACATAACATACAAGAG 57.845 33.333 0.00 0.00 0.00 2.85
449 512 8.939201 ATCAAGTGACATAACATACAAGAGAG 57.061 34.615 0.00 0.00 0.00 3.20
450 513 8.122472 TCAAGTGACATAACATACAAGAGAGA 57.878 34.615 0.00 0.00 0.00 3.10
451 514 8.585018 TCAAGTGACATAACATACAAGAGAGAA 58.415 33.333 0.00 0.00 0.00 2.87
452 515 8.867935 CAAGTGACATAACATACAAGAGAGAAG 58.132 37.037 0.00 0.00 0.00 2.85
454 517 8.807118 AGTGACATAACATACAAGAGAGAAGAA 58.193 33.333 0.00 0.00 0.00 2.52
455 518 9.424319 GTGACATAACATACAAGAGAGAAGAAA 57.576 33.333 0.00 0.00 0.00 2.52
456 519 9.996554 TGACATAACATACAAGAGAGAAGAAAA 57.003 29.630 0.00 0.00 0.00 2.29
489 552 2.857592 AATTGCACGGATCTCAATGC 57.142 45.000 0.00 0.00 38.59 3.56
490 553 1.753930 ATTGCACGGATCTCAATGCA 58.246 45.000 8.86 8.86 45.94 3.96
491 554 3.246403 TGCACGGATCTCAATGCAA 57.754 47.368 10.05 0.00 44.72 4.08
492 555 1.089112 TGCACGGATCTCAATGCAAG 58.911 50.000 10.05 0.00 44.72 4.01
493 556 1.089920 GCACGGATCTCAATGCAAGT 58.910 50.000 0.00 0.00 38.00 3.16
494 557 1.470098 GCACGGATCTCAATGCAAGTT 59.530 47.619 0.00 0.00 38.00 2.66
495 558 2.476854 GCACGGATCTCAATGCAAGTTC 60.477 50.000 0.00 0.00 38.00 3.01
496 559 3.005554 CACGGATCTCAATGCAAGTTCT 58.994 45.455 0.00 0.00 0.00 3.01
497 560 3.063180 CACGGATCTCAATGCAAGTTCTC 59.937 47.826 0.00 0.00 0.00 2.87
498 561 3.264947 CGGATCTCAATGCAAGTTCTCA 58.735 45.455 0.00 0.00 0.00 3.27
499 562 3.063180 CGGATCTCAATGCAAGTTCTCAC 59.937 47.826 0.00 0.00 0.00 3.51
500 563 3.063180 GGATCTCAATGCAAGTTCTCACG 59.937 47.826 0.00 0.00 0.00 4.35
501 564 3.385193 TCTCAATGCAAGTTCTCACGA 57.615 42.857 0.00 0.00 0.00 4.35
502 565 3.930336 TCTCAATGCAAGTTCTCACGAT 58.070 40.909 0.00 0.00 0.00 3.73
503 566 5.072040 TCTCAATGCAAGTTCTCACGATA 57.928 39.130 0.00 0.00 0.00 2.92
504 567 5.664457 TCTCAATGCAAGTTCTCACGATAT 58.336 37.500 0.00 0.00 0.00 1.63
505 568 6.805713 TCTCAATGCAAGTTCTCACGATATA 58.194 36.000 0.00 0.00 0.00 0.86
506 569 7.264947 TCTCAATGCAAGTTCTCACGATATAA 58.735 34.615 0.00 0.00 0.00 0.98
507 570 7.222805 TCTCAATGCAAGTTCTCACGATATAAC 59.777 37.037 0.00 0.00 0.00 1.89
508 571 6.816140 TCAATGCAAGTTCTCACGATATAACA 59.184 34.615 0.00 0.00 0.00 2.41
509 572 7.495606 TCAATGCAAGTTCTCACGATATAACAT 59.504 33.333 0.00 0.00 0.00 2.71
510 573 6.588348 TGCAAGTTCTCACGATATAACATG 57.412 37.500 0.00 0.00 0.00 3.21
511 574 6.337356 TGCAAGTTCTCACGATATAACATGA 58.663 36.000 0.00 0.00 0.00 3.07
512 575 6.816140 TGCAAGTTCTCACGATATAACATGAA 59.184 34.615 0.00 0.00 0.00 2.57
513 576 7.495606 TGCAAGTTCTCACGATATAACATGAAT 59.504 33.333 0.00 0.00 0.00 2.57
514 577 8.338259 GCAAGTTCTCACGATATAACATGAATT 58.662 33.333 0.00 0.00 0.00 2.17
515 578 9.642312 CAAGTTCTCACGATATAACATGAATTG 57.358 33.333 0.00 0.00 0.00 2.32
516 579 9.599866 AAGTTCTCACGATATAACATGAATTGA 57.400 29.630 0.00 0.00 0.00 2.57
517 580 9.254133 AGTTCTCACGATATAACATGAATTGAG 57.746 33.333 0.00 3.26 0.00 3.02
518 581 9.249457 GTTCTCACGATATAACATGAATTGAGA 57.751 33.333 0.00 5.45 36.15 3.27
519 582 8.803201 TCTCACGATATAACATGAATTGAGAC 57.197 34.615 0.00 0.00 33.69 3.36
520 583 8.633561 TCTCACGATATAACATGAATTGAGACT 58.366 33.333 0.00 0.00 33.69 3.24
521 584 9.254133 CTCACGATATAACATGAATTGAGACTT 57.746 33.333 0.00 0.00 31.50 3.01
525 588 9.995379 CGATATAACATGAATTGAGACTTAACG 57.005 33.333 0.00 0.00 0.00 3.18
530 593 8.955061 AACATGAATTGAGACTTAACGAAATG 57.045 30.769 0.00 0.00 0.00 2.32
531 594 8.099364 ACATGAATTGAGACTTAACGAAATGT 57.901 30.769 0.00 0.00 0.00 2.71
532 595 8.567948 ACATGAATTGAGACTTAACGAAATGTT 58.432 29.630 0.00 0.00 44.78 2.71
535 598 9.268268 TGAATTGAGACTTAACGAAATGTTAGT 57.732 29.630 0.00 0.00 43.63 2.24
536 599 9.742552 GAATTGAGACTTAACGAAATGTTAGTC 57.257 33.333 0.00 0.00 43.63 2.59
537 600 6.922980 TGAGACTTAACGAAATGTTAGTCG 57.077 37.500 0.00 0.00 43.63 4.18
538 601 6.671190 TGAGACTTAACGAAATGTTAGTCGA 58.329 36.000 0.00 0.00 43.63 4.20
539 602 6.800408 TGAGACTTAACGAAATGTTAGTCGAG 59.200 38.462 0.00 0.00 43.63 4.04
540 603 5.572126 AGACTTAACGAAATGTTAGTCGAGC 59.428 40.000 0.00 0.00 43.63 5.03
541 604 4.322804 ACTTAACGAAATGTTAGTCGAGCG 59.677 41.667 0.00 0.00 43.63 5.03
542 605 2.624316 ACGAAATGTTAGTCGAGCGA 57.376 45.000 0.00 0.00 39.64 4.93
543 606 2.516923 ACGAAATGTTAGTCGAGCGAG 58.483 47.619 0.00 0.00 39.64 5.03
544 607 2.161012 ACGAAATGTTAGTCGAGCGAGA 59.839 45.455 0.00 0.00 39.64 4.04
545 608 3.168963 CGAAATGTTAGTCGAGCGAGAA 58.831 45.455 0.00 0.00 39.64 2.87
546 609 3.606777 CGAAATGTTAGTCGAGCGAGAAA 59.393 43.478 0.00 0.00 39.64 2.52
547 610 4.089493 CGAAATGTTAGTCGAGCGAGAAAA 59.911 41.667 0.00 0.00 39.64 2.29
548 611 5.517037 AAATGTTAGTCGAGCGAGAAAAG 57.483 39.130 0.00 0.00 0.00 2.27
549 612 2.325761 TGTTAGTCGAGCGAGAAAAGC 58.674 47.619 0.00 0.00 0.00 3.51
550 613 2.287970 TGTTAGTCGAGCGAGAAAAGCA 60.288 45.455 0.00 0.00 37.01 3.91
551 614 2.924290 GTTAGTCGAGCGAGAAAAGCAT 59.076 45.455 0.00 0.00 37.01 3.79
552 615 1.634702 AGTCGAGCGAGAAAAGCATC 58.365 50.000 0.00 0.00 37.01 3.91
553 616 0.296056 GTCGAGCGAGAAAAGCATCG 59.704 55.000 0.00 0.00 41.79 3.84
576 639 4.154918 GGACTGAATCAGAATTTCGCTTGT 59.845 41.667 18.20 0.00 35.18 3.16
577 640 5.351465 GGACTGAATCAGAATTTCGCTTGTA 59.649 40.000 18.20 0.00 35.18 2.41
578 641 6.170675 ACTGAATCAGAATTTCGCTTGTAC 57.829 37.500 18.20 0.00 35.18 2.90
612 675 0.595095 CGTACCTACCGGCTATCACC 59.405 60.000 0.00 0.00 0.00 4.02
673 738 2.035237 TTGAGACGTGGCTTCCCGTT 62.035 55.000 0.00 0.00 37.44 4.44
683 748 1.497278 CTTCCCGTTGCACGACATG 59.503 57.895 9.75 0.00 46.05 3.21
697 762 0.391661 GACATGCACCGTGACTCCAT 60.392 55.000 1.65 0.00 0.00 3.41
720 785 3.829601 TGGGTTAGTTTATTGTGCCCAAG 59.170 43.478 0.00 0.00 41.21 3.61
739 950 1.946475 GCCTACGGACAGGTGGAGTC 61.946 65.000 2.47 0.00 38.05 3.36
759 972 1.734465 CAGTTCTGACTTGGGATTCGC 59.266 52.381 0.00 0.00 32.54 4.70
777 1076 2.513204 TAGCTAGCTCGACCGCGT 60.513 61.111 23.26 0.00 38.98 6.01
806 1105 2.356553 TCCGGACGTCGCTTTTGG 60.357 61.111 9.92 4.51 37.59 3.28
821 1120 2.933878 TTTGGCGCCTCACAACTCGT 62.934 55.000 29.70 0.00 0.00 4.18
828 1127 2.155155 CGCCTCACAACTCGTCTTAAAC 59.845 50.000 0.00 0.00 0.00 2.01
829 1128 2.479275 GCCTCACAACTCGTCTTAAACC 59.521 50.000 0.00 0.00 0.00 3.27
831 1130 3.493699 CCTCACAACTCGTCTTAAACCCA 60.494 47.826 0.00 0.00 0.00 4.51
833 1132 2.220133 CACAACTCGTCTTAAACCCACG 59.780 50.000 0.00 0.00 34.78 4.94
904 1221 2.382519 CGTTCATGCGCTACTAGTACC 58.617 52.381 9.73 0.00 0.00 3.34
910 1227 1.770085 GCGCTACTAGTACCGCTCGT 61.770 60.000 27.45 0.00 42.83 4.18
985 3001 5.309806 CCCCAACTGTATAAATAGCTACCCT 59.690 44.000 0.00 0.00 0.00 4.34
986 3002 6.183361 CCCCAACTGTATAAATAGCTACCCTT 60.183 42.308 0.00 0.00 0.00 3.95
997 3013 1.972660 GCTACCCTTGCCGTCCTGAT 61.973 60.000 0.00 0.00 0.00 2.90
1049 3074 2.286242 CGCTAGCAGCAATTGATCACTG 60.286 50.000 16.45 7.99 42.58 3.66
1070 3095 0.107703 TCAGCAGGCCCATTAACTCG 60.108 55.000 0.00 0.00 0.00 4.18
1110 3138 2.376956 GCTTGATAGCAGTACGTCGAG 58.623 52.381 0.00 0.00 46.95 4.04
1117 3145 1.062685 CAGTACGTCGAGCGCATCT 59.937 57.895 11.47 0.00 46.11 2.90
1124 3152 4.147449 CGAGCGCATCTCCCCACA 62.147 66.667 11.47 0.00 38.62 4.17
1125 3153 2.507944 GAGCGCATCTCCCCACAT 59.492 61.111 11.47 0.00 35.77 3.21
1126 3154 1.153086 GAGCGCATCTCCCCACATT 60.153 57.895 11.47 0.00 35.77 2.71
1127 3155 0.106708 GAGCGCATCTCCCCACATTA 59.893 55.000 11.47 0.00 35.77 1.90
1130 3158 1.747206 GCGCATCTCCCCACATTAACT 60.747 52.381 0.30 0.00 0.00 2.24
1168 3196 4.077188 GCAGTGCTTCGACGCCAC 62.077 66.667 11.76 9.49 0.00 5.01
1169 3197 3.414700 CAGTGCTTCGACGCCACC 61.415 66.667 11.76 0.00 0.00 4.61
1170 3198 3.923864 AGTGCTTCGACGCCACCA 61.924 61.111 11.76 0.00 0.00 4.17
2012 4040 0.942410 GTAAACTCTGCACCGTCGCA 60.942 55.000 0.00 0.00 40.32 5.10
2411 4439 2.434185 TTCGAGGACATGGTGCGC 60.434 61.111 0.00 0.00 0.00 6.09
2634 4668 4.057428 GCACGCTCACGGAGGAGT 62.057 66.667 3.56 0.00 46.04 3.85
2724 4762 3.328382 TCTACAGCGTGCTTGGTTAAT 57.672 42.857 0.00 0.00 0.00 1.40
2728 4766 2.360801 ACAGCGTGCTTGGTTAATGTTT 59.639 40.909 0.00 0.00 0.00 2.83
2785 4834 9.995003 TTGCAAACAAACTTGATCCTAATTAAT 57.005 25.926 0.00 0.00 31.21 1.40
2800 4849 9.853177 ATCCTAATTAATTCTCGACCTCAATTT 57.147 29.630 3.39 0.00 0.00 1.82
2827 4879 5.413213 TCGGAACCACGATGATTTGTATTTT 59.587 36.000 0.00 0.00 38.06 1.82
2869 4924 8.387354 CAATTTATTGATGACGTGTACTGCTTA 58.613 33.333 0.00 0.00 40.14 3.09
2898 4953 4.517285 TCACTCTGTTTGCAGTTTTCTCT 58.483 39.130 0.00 0.00 43.05 3.10
2899 4954 4.943705 TCACTCTGTTTGCAGTTTTCTCTT 59.056 37.500 0.00 0.00 43.05 2.85
2900 4955 5.065218 TCACTCTGTTTGCAGTTTTCTCTTC 59.935 40.000 0.00 0.00 43.05 2.87
2901 4956 5.065731 CACTCTGTTTGCAGTTTTCTCTTCT 59.934 40.000 0.00 0.00 43.05 2.85
2902 4957 5.649831 ACTCTGTTTGCAGTTTTCTCTTCTT 59.350 36.000 0.00 0.00 43.05 2.52
2903 4958 6.151817 ACTCTGTTTGCAGTTTTCTCTTCTTT 59.848 34.615 0.00 0.00 43.05 2.52
2904 4959 6.924111 TCTGTTTGCAGTTTTCTCTTCTTTT 58.076 32.000 0.00 0.00 43.05 2.27
2905 4960 7.378181 TCTGTTTGCAGTTTTCTCTTCTTTTT 58.622 30.769 0.00 0.00 43.05 1.94
2958 5013 2.740714 CGCCCGTTTCAGCAGCTAC 61.741 63.158 0.00 0.00 0.00 3.58
3003 5058 0.532573 TGCGTGGGCAGTTTCAAAAA 59.467 45.000 0.00 0.00 46.21 1.94
3054 5109 4.793216 GTGGTATGATTTTTCACACGATGC 59.207 41.667 0.00 0.00 0.00 3.91
3055 5110 4.457257 TGGTATGATTTTTCACACGATGCA 59.543 37.500 0.00 0.00 0.00 3.96
3056 5111 4.793216 GGTATGATTTTTCACACGATGCAC 59.207 41.667 0.00 0.00 0.00 4.57
3057 5112 4.771590 ATGATTTTTCACACGATGCACT 57.228 36.364 0.00 0.00 0.00 4.40
3058 5113 4.145876 TGATTTTTCACACGATGCACTC 57.854 40.909 0.00 0.00 0.00 3.51
3059 5114 3.814842 TGATTTTTCACACGATGCACTCT 59.185 39.130 0.00 0.00 0.00 3.24
3068 5123 2.031769 CACGATGCACTCTTTTTGCTCA 60.032 45.455 0.00 0.00 40.86 4.26
3071 5126 3.850273 CGATGCACTCTTTTTGCTCAATC 59.150 43.478 0.00 0.00 40.86 2.67
3072 5127 3.648339 TGCACTCTTTTTGCTCAATCC 57.352 42.857 0.00 0.00 40.86 3.01
3073 5128 3.225104 TGCACTCTTTTTGCTCAATCCT 58.775 40.909 0.00 0.00 40.86 3.24
3076 5131 3.499918 CACTCTTTTTGCTCAATCCTCGT 59.500 43.478 0.00 0.00 0.00 4.18
3077 5132 3.748568 ACTCTTTTTGCTCAATCCTCGTC 59.251 43.478 0.00 0.00 0.00 4.20
3078 5133 2.736721 TCTTTTTGCTCAATCCTCGTCG 59.263 45.455 0.00 0.00 0.00 5.12
3079 5134 0.796312 TTTTGCTCAATCCTCGTCGC 59.204 50.000 0.00 0.00 0.00 5.19
3080 5135 0.037326 TTTGCTCAATCCTCGTCGCT 60.037 50.000 0.00 0.00 0.00 4.93
3081 5136 0.737367 TTGCTCAATCCTCGTCGCTG 60.737 55.000 0.00 0.00 0.00 5.18
3082 5137 1.880340 GCTCAATCCTCGTCGCTGG 60.880 63.158 0.00 0.00 0.00 4.85
3083 5138 1.513158 CTCAATCCTCGTCGCTGGT 59.487 57.895 4.48 0.00 0.00 4.00
3084 5139 0.803768 CTCAATCCTCGTCGCTGGTG 60.804 60.000 4.48 0.00 0.00 4.17
3085 5140 1.215382 CAATCCTCGTCGCTGGTGA 59.785 57.895 4.48 0.00 0.00 4.02
3086 5141 0.179100 CAATCCTCGTCGCTGGTGAT 60.179 55.000 4.48 0.00 0.00 3.06
3087 5142 0.179100 AATCCTCGTCGCTGGTGATG 60.179 55.000 4.48 0.00 0.00 3.07
3088 5143 2.021068 ATCCTCGTCGCTGGTGATGG 62.021 60.000 3.93 0.64 0.00 3.51
3089 5144 2.710902 CCTCGTCGCTGGTGATGGA 61.711 63.158 3.93 0.00 0.00 3.41
3099 5154 1.938577 CTGGTGATGGATTCAAGCGAG 59.061 52.381 0.00 0.00 35.70 5.03
3122 5177 3.715628 ATTGCTGGATAATTGGCGAAC 57.284 42.857 0.00 0.00 0.00 3.95
3144 5199 3.491619 CCGAGGACAACTCAGATGGTATG 60.492 52.174 0.00 0.00 46.98 2.39
3145 5200 3.381590 CGAGGACAACTCAGATGGTATGA 59.618 47.826 0.00 0.00 46.98 2.15
3146 5201 4.038522 CGAGGACAACTCAGATGGTATGAT 59.961 45.833 0.00 0.00 46.98 2.45
3147 5202 5.452496 CGAGGACAACTCAGATGGTATGATT 60.452 44.000 0.00 0.00 46.98 2.57
3167 5266 2.570442 TTTTGTGCTGAAACGAACCC 57.430 45.000 0.00 0.00 0.00 4.11
3168 5267 1.464734 TTTGTGCTGAAACGAACCCA 58.535 45.000 0.00 0.00 0.00 4.51
3170 5269 1.686355 TGTGCTGAAACGAACCCATT 58.314 45.000 0.00 0.00 0.00 3.16
3171 5270 2.852449 TGTGCTGAAACGAACCCATTA 58.148 42.857 0.00 0.00 0.00 1.90
3173 5272 2.161609 GTGCTGAAACGAACCCATTAGG 59.838 50.000 0.00 0.00 43.78 2.69
3188 5287 5.665459 CCCATTAGGTTCAAGTCTAGACTG 58.335 45.833 25.83 18.45 41.58 3.51
3189 5288 5.395768 CCCATTAGGTTCAAGTCTAGACTGG 60.396 48.000 25.83 22.75 41.58 4.00
3195 5294 1.751351 TCAAGTCTAGACTGGGCATCG 59.249 52.381 25.83 8.87 41.58 3.84
3196 5295 1.115467 AAGTCTAGACTGGGCATCGG 58.885 55.000 25.83 0.00 41.58 4.18
3245 5344 9.684448 TTTATATTTTTCTGCAATGTTCGTTCA 57.316 25.926 0.00 0.00 0.00 3.18
3247 5346 4.630894 TTTTCTGCAATGTTCGTTCAGT 57.369 36.364 0.00 0.00 0.00 3.41
3248 5347 3.607422 TTCTGCAATGTTCGTTCAGTG 57.393 42.857 0.00 5.90 36.64 3.66
3249 5348 2.832563 TCTGCAATGTTCGTTCAGTGA 58.167 42.857 12.25 0.00 35.78 3.41
3250 5349 3.202097 TCTGCAATGTTCGTTCAGTGAA 58.798 40.909 0.08 0.08 35.78 3.18
3251 5350 3.625313 TCTGCAATGTTCGTTCAGTGAAA 59.375 39.130 7.25 0.00 35.78 2.69
3252 5351 4.095632 TCTGCAATGTTCGTTCAGTGAAAA 59.904 37.500 7.25 0.00 35.78 2.29
3253 5352 4.738124 TGCAATGTTCGTTCAGTGAAAAA 58.262 34.783 7.25 2.50 35.78 1.94
3254 5353 4.797868 TGCAATGTTCGTTCAGTGAAAAAG 59.202 37.500 7.25 2.63 35.78 2.27
3255 5354 5.034152 GCAATGTTCGTTCAGTGAAAAAGA 58.966 37.500 7.25 5.07 35.78 2.52
3256 5355 5.687285 GCAATGTTCGTTCAGTGAAAAAGAT 59.313 36.000 7.25 6.60 35.78 2.40
3257 5356 6.855914 GCAATGTTCGTTCAGTGAAAAAGATA 59.144 34.615 7.25 1.66 35.78 1.98
3258 5357 7.149128 GCAATGTTCGTTCAGTGAAAAAGATAC 60.149 37.037 7.25 8.97 35.78 2.24
3259 5358 7.730364 ATGTTCGTTCAGTGAAAAAGATACT 57.270 32.000 7.25 0.00 0.00 2.12
3260 5359 7.173863 TGTTCGTTCAGTGAAAAAGATACTC 57.826 36.000 7.25 0.00 0.00 2.59
3261 5360 6.984474 TGTTCGTTCAGTGAAAAAGATACTCT 59.016 34.615 7.25 0.00 0.00 3.24
3262 5361 7.494625 TGTTCGTTCAGTGAAAAAGATACTCTT 59.505 33.333 7.25 0.00 38.59 2.85
3263 5362 7.639162 TCGTTCAGTGAAAAAGATACTCTTC 57.361 36.000 7.25 0.00 35.27 2.87
3264 5363 7.434492 TCGTTCAGTGAAAAAGATACTCTTCT 58.566 34.615 7.25 0.00 35.27 2.85
3265 5364 8.573885 TCGTTCAGTGAAAAAGATACTCTTCTA 58.426 33.333 7.25 0.00 35.27 2.10
3266 5365 8.855279 CGTTCAGTGAAAAAGATACTCTTCTAG 58.145 37.037 7.25 0.00 35.27 2.43
3267 5366 9.915629 GTTCAGTGAAAAAGATACTCTTCTAGA 57.084 33.333 7.25 0.00 35.27 2.43
3268 5367 9.915629 TTCAGTGAAAAAGATACTCTTCTAGAC 57.084 33.333 2.20 0.00 35.27 2.59
3269 5368 9.303116 TCAGTGAAAAAGATACTCTTCTAGACT 57.697 33.333 0.00 0.00 35.27 3.24
3276 5375 9.930158 AAAAGATACTCTTCTAGACTATGAGGT 57.070 33.333 12.74 3.47 35.27 3.85
3277 5376 8.918202 AAGATACTCTTCTAGACTATGAGGTG 57.082 38.462 12.74 3.59 28.99 4.00
3278 5377 8.041143 AGATACTCTTCTAGACTATGAGGTGT 57.959 38.462 12.74 7.54 0.00 4.16
3279 5378 8.154856 AGATACTCTTCTAGACTATGAGGTGTC 58.845 40.741 12.74 7.11 0.00 3.67
3280 5379 6.068461 ACTCTTCTAGACTATGAGGTGTCA 57.932 41.667 12.74 0.00 35.81 3.58
3285 5384 8.470805 TCTTCTAGACTATGAGGTGTCAATTTC 58.529 37.037 0.00 0.00 35.88 2.17
3294 5393 5.789521 TGAGGTGTCAATTTCGTCAATCTA 58.210 37.500 0.00 0.00 0.00 1.98
3295 5394 5.869344 TGAGGTGTCAATTTCGTCAATCTAG 59.131 40.000 0.00 0.00 0.00 2.43
3297 5396 5.869888 AGGTGTCAATTTCGTCAATCTAGAC 59.130 40.000 0.00 0.00 35.19 2.59
3309 5408 5.763088 GTCAATCTAGACGATGATGTAGCA 58.237 41.667 0.00 0.00 31.20 3.49
3310 5409 6.385843 GTCAATCTAGACGATGATGTAGCAT 58.614 40.000 0.00 0.00 31.20 3.79
3311 5410 6.307558 GTCAATCTAGACGATGATGTAGCATG 59.692 42.308 0.00 0.00 31.20 4.06
3312 5411 4.166187 TCTAGACGATGATGTAGCATGC 57.834 45.455 10.51 10.51 0.00 4.06
3313 5412 3.823304 TCTAGACGATGATGTAGCATGCT 59.177 43.478 25.99 25.99 0.00 3.79
3314 5413 3.023946 AGACGATGATGTAGCATGCTC 57.976 47.619 26.57 16.23 0.00 4.26
3315 5414 1.718178 GACGATGATGTAGCATGCTCG 59.282 52.381 26.57 21.51 0.00 5.03
3316 5415 1.338020 ACGATGATGTAGCATGCTCGA 59.662 47.619 26.57 12.58 0.00 4.04
3317 5416 1.718178 CGATGATGTAGCATGCTCGAC 59.282 52.381 26.57 18.66 0.00 4.20
3328 5427 1.070376 CATGCTCGACCAACATATGCG 60.070 52.381 1.58 0.00 0.00 4.73
3330 5429 0.301687 GCTCGACCAACATATGCGTG 59.698 55.000 1.58 1.16 0.00 5.34
3445 5554 0.673644 GACCGGTAGCAACAGCACAT 60.674 55.000 7.34 0.00 0.00 3.21
3512 5687 2.271800 CCACTTGGTAGTTCGCAGATC 58.728 52.381 0.00 0.00 35.04 2.75
3536 5711 5.943416 CCTCTGACCTACATACTCCTAGATG 59.057 48.000 0.00 0.00 0.00 2.90
3703 5878 3.319137 TGATATAGGATGCCTCGTTGC 57.681 47.619 0.00 0.00 34.61 4.17
3715 5890 2.478539 GCCTCGTTGCCAGAAATTCATC 60.479 50.000 0.00 0.00 0.00 2.92
3716 5891 3.012518 CCTCGTTGCCAGAAATTCATCT 58.987 45.455 0.00 0.00 0.00 2.90
3717 5892 4.191544 CCTCGTTGCCAGAAATTCATCTA 58.808 43.478 0.00 0.00 0.00 1.98
3718 5893 4.818546 CCTCGTTGCCAGAAATTCATCTAT 59.181 41.667 0.00 0.00 0.00 1.98
3720 5895 6.652481 CCTCGTTGCCAGAAATTCATCTATAT 59.348 38.462 0.00 0.00 0.00 0.86
3721 5896 7.148507 CCTCGTTGCCAGAAATTCATCTATATC 60.149 40.741 0.00 0.00 0.00 1.63
3722 5897 7.445121 TCGTTGCCAGAAATTCATCTATATCT 58.555 34.615 0.00 0.00 0.00 1.98
3723 5898 8.585018 TCGTTGCCAGAAATTCATCTATATCTA 58.415 33.333 0.00 0.00 0.00 1.98
3724 5899 9.376075 CGTTGCCAGAAATTCATCTATATCTAT 57.624 33.333 0.00 0.00 0.00 1.98
3754 5929 9.860898 ACTATTAAAAGAGCAAACATGAATTCC 57.139 29.630 0.00 0.00 0.00 3.01
3755 5930 9.305925 CTATTAAAAGAGCAAACATGAATTCCC 57.694 33.333 0.00 0.00 0.00 3.97
3756 5931 4.541973 AAAGAGCAAACATGAATTCCCC 57.458 40.909 0.00 0.00 0.00 4.81
3758 5933 4.591321 AGAGCAAACATGAATTCCCCTA 57.409 40.909 0.00 0.00 0.00 3.53
3759 5934 4.934356 AGAGCAAACATGAATTCCCCTAA 58.066 39.130 0.00 0.00 0.00 2.69
3760 5935 5.332743 AGAGCAAACATGAATTCCCCTAAA 58.667 37.500 0.00 0.00 0.00 1.85
3761 5936 5.779771 AGAGCAAACATGAATTCCCCTAAAA 59.220 36.000 0.00 0.00 0.00 1.52
3762 5937 5.793817 AGCAAACATGAATTCCCCTAAAAC 58.206 37.500 0.00 0.00 0.00 2.43
3764 5939 5.512232 GCAAACATGAATTCCCCTAAAACCA 60.512 40.000 0.00 0.00 0.00 3.67
3765 5940 5.738619 AACATGAATTCCCCTAAAACCAC 57.261 39.130 0.00 0.00 0.00 4.16
3766 5941 4.746466 ACATGAATTCCCCTAAAACCACA 58.254 39.130 0.00 0.00 0.00 4.17
3767 5942 4.526650 ACATGAATTCCCCTAAAACCACAC 59.473 41.667 0.00 0.00 0.00 3.82
3768 5943 3.502356 TGAATTCCCCTAAAACCACACC 58.498 45.455 2.27 0.00 0.00 4.16
3769 5944 3.117093 TGAATTCCCCTAAAACCACACCA 60.117 43.478 2.27 0.00 0.00 4.17
3770 5945 2.368311 TTCCCCTAAAACCACACCAC 57.632 50.000 0.00 0.00 0.00 4.16
3771 5946 1.223501 TCCCCTAAAACCACACCACA 58.776 50.000 0.00 0.00 0.00 4.17
3772 5947 1.569548 TCCCCTAAAACCACACCACAA 59.430 47.619 0.00 0.00 0.00 3.33
3773 5948 2.024273 TCCCCTAAAACCACACCACAAA 60.024 45.455 0.00 0.00 0.00 2.83
3777 5952 4.141824 CCCTAAAACCACACCACAAAATGT 60.142 41.667 0.00 0.00 0.00 2.71
3778 5953 5.069251 CCCTAAAACCACACCACAAAATGTA 59.931 40.000 0.00 0.00 0.00 2.29
3779 5954 5.980715 CCTAAAACCACACCACAAAATGTAC 59.019 40.000 0.00 0.00 0.00 2.90
3780 5955 5.407407 AAAACCACACCACAAAATGTACA 57.593 34.783 0.00 0.00 0.00 2.90
3781 5956 4.379339 AACCACACCACAAAATGTACAC 57.621 40.909 0.00 0.00 0.00 2.90
3782 5957 3.357203 ACCACACCACAAAATGTACACA 58.643 40.909 0.00 0.00 0.00 3.72
3783 5958 3.380004 ACCACACCACAAAATGTACACAG 59.620 43.478 0.00 0.00 0.00 3.66
3785 5960 4.097135 CCACACCACAAAATGTACACAGAA 59.903 41.667 0.00 0.00 0.00 3.02
3786 5961 5.273170 CACACCACAAAATGTACACAGAAG 58.727 41.667 0.00 0.00 0.00 2.85
3787 5962 4.947388 ACACCACAAAATGTACACAGAAGT 59.053 37.500 0.00 0.00 0.00 3.01
3789 5964 6.037830 ACACCACAAAATGTACACAGAAGTAC 59.962 38.462 0.00 0.00 43.58 2.73
3792 5967 6.293407 CCACAAAATGTACACAGAAGTACCAG 60.293 42.308 0.00 0.00 42.84 4.00
3793 5968 6.481976 CACAAAATGTACACAGAAGTACCAGA 59.518 38.462 0.00 0.00 42.84 3.86
3794 5969 6.706270 ACAAAATGTACACAGAAGTACCAGAG 59.294 38.462 0.00 0.00 42.84 3.35
3795 5970 6.665992 AAATGTACACAGAAGTACCAGAGA 57.334 37.500 0.00 0.00 42.84 3.10
3797 5972 3.501062 TGTACACAGAAGTACCAGAGACG 59.499 47.826 0.00 0.00 42.84 4.18
3800 5975 3.383825 ACACAGAAGTACCAGAGACGTTT 59.616 43.478 0.00 0.00 0.00 3.60
3801 5976 3.736252 CACAGAAGTACCAGAGACGTTTG 59.264 47.826 0.00 0.00 0.00 2.93
3802 5977 3.635373 ACAGAAGTACCAGAGACGTTTGA 59.365 43.478 0.00 0.00 0.00 2.69
3803 5978 4.281182 ACAGAAGTACCAGAGACGTTTGAT 59.719 41.667 0.00 0.00 0.00 2.57
3805 5980 3.489180 AGTACCAGAGACGTTTGATCG 57.511 47.619 0.00 0.00 0.00 3.69
3806 5981 3.079578 AGTACCAGAGACGTTTGATCGA 58.920 45.455 0.00 0.00 34.70 3.59
3808 5983 3.152261 ACCAGAGACGTTTGATCGATC 57.848 47.619 18.72 18.72 34.70 3.69
3809 5984 2.159226 ACCAGAGACGTTTGATCGATCC 60.159 50.000 22.31 6.52 34.70 3.36
3810 5985 2.464865 CAGAGACGTTTGATCGATCCC 58.535 52.381 22.31 9.48 34.70 3.85
3811 5986 2.100197 AGAGACGTTTGATCGATCCCA 58.900 47.619 22.31 6.62 34.70 4.37
3812 5987 2.159226 AGAGACGTTTGATCGATCCCAC 60.159 50.000 22.31 16.58 34.70 4.61
3813 5988 1.825474 AGACGTTTGATCGATCCCACT 59.175 47.619 22.31 10.10 34.70 4.00
3814 5989 3.021695 AGACGTTTGATCGATCCCACTA 58.978 45.455 22.31 0.24 34.70 2.74
3815 5990 3.446161 AGACGTTTGATCGATCCCACTAA 59.554 43.478 22.31 6.97 34.70 2.24
3816 5991 4.099573 AGACGTTTGATCGATCCCACTAAT 59.900 41.667 22.31 7.33 34.70 1.73
3817 5992 4.766375 ACGTTTGATCGATCCCACTAATT 58.234 39.130 22.31 1.85 34.70 1.40
3818 5993 5.183228 ACGTTTGATCGATCCCACTAATTT 58.817 37.500 22.31 0.00 34.70 1.82
3819 5994 6.342906 ACGTTTGATCGATCCCACTAATTTA 58.657 36.000 22.31 0.00 34.70 1.40
3820 5995 6.257193 ACGTTTGATCGATCCCACTAATTTAC 59.743 38.462 22.31 4.69 34.70 2.01
3821 5996 6.256975 CGTTTGATCGATCCCACTAATTTACA 59.743 38.462 22.31 0.00 0.00 2.41
3822 5997 7.042051 CGTTTGATCGATCCCACTAATTTACAT 60.042 37.037 22.31 0.00 0.00 2.29
3823 5998 7.962964 TTGATCGATCCCACTAATTTACATC 57.037 36.000 22.31 0.00 0.00 3.06
3824 5999 6.464222 TGATCGATCCCACTAATTTACATCC 58.536 40.000 22.31 0.00 0.00 3.51
3825 6000 5.880164 TCGATCCCACTAATTTACATCCA 57.120 39.130 0.00 0.00 0.00 3.41
3826 6001 6.241882 TCGATCCCACTAATTTACATCCAA 57.758 37.500 0.00 0.00 0.00 3.53
3827 6002 6.053005 TCGATCCCACTAATTTACATCCAAC 58.947 40.000 0.00 0.00 0.00 3.77
3828 6003 5.050363 CGATCCCACTAATTTACATCCAACG 60.050 44.000 0.00 0.00 0.00 4.10
3829 6004 5.168647 TCCCACTAATTTACATCCAACGT 57.831 39.130 0.00 0.00 0.00 3.99
3830 6005 5.562635 TCCCACTAATTTACATCCAACGTT 58.437 37.500 0.00 0.00 0.00 3.99
3831 6006 5.644636 TCCCACTAATTTACATCCAACGTTC 59.355 40.000 0.00 0.00 0.00 3.95
3832 6007 5.646360 CCCACTAATTTACATCCAACGTTCT 59.354 40.000 0.00 0.00 0.00 3.01
3833 6008 6.819649 CCCACTAATTTACATCCAACGTTCTA 59.180 38.462 0.00 0.00 0.00 2.10
3834 6009 7.201582 CCCACTAATTTACATCCAACGTTCTAC 60.202 40.741 0.00 0.00 0.00 2.59
3835 6010 7.332430 CCACTAATTTACATCCAACGTTCTACA 59.668 37.037 0.00 0.00 0.00 2.74
3836 6011 8.879759 CACTAATTTACATCCAACGTTCTACAT 58.120 33.333 0.00 0.00 0.00 2.29
3837 6012 9.444600 ACTAATTTACATCCAACGTTCTACATT 57.555 29.630 0.00 0.00 0.00 2.71
3840 6015 8.780846 ATTTACATCCAACGTTCTACATTACA 57.219 30.769 0.00 0.00 0.00 2.41
3841 6016 8.780846 TTTACATCCAACGTTCTACATTACAT 57.219 30.769 0.00 0.00 0.00 2.29
3842 6017 6.903883 ACATCCAACGTTCTACATTACATC 57.096 37.500 0.00 0.00 0.00 3.06
3843 6018 6.403049 ACATCCAACGTTCTACATTACATCA 58.597 36.000 0.00 0.00 0.00 3.07
3844 6019 6.876789 ACATCCAACGTTCTACATTACATCAA 59.123 34.615 0.00 0.00 0.00 2.57
3845 6020 6.961359 TCCAACGTTCTACATTACATCAAG 57.039 37.500 0.00 0.00 0.00 3.02
3846 6021 5.350365 TCCAACGTTCTACATTACATCAAGC 59.650 40.000 0.00 0.00 0.00 4.01
3847 6022 5.121611 CCAACGTTCTACATTACATCAAGCA 59.878 40.000 0.00 0.00 0.00 3.91
3848 6023 6.183360 CCAACGTTCTACATTACATCAAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
3849 6024 6.589830 ACGTTCTACATTACATCAAGCATC 57.410 37.500 0.00 0.00 0.00 3.91
3850 6025 6.341316 ACGTTCTACATTACATCAAGCATCT 58.659 36.000 0.00 0.00 0.00 2.90
3851 6026 7.489160 ACGTTCTACATTACATCAAGCATCTA 58.511 34.615 0.00 0.00 0.00 1.98
3852 6027 7.435488 ACGTTCTACATTACATCAAGCATCTAC 59.565 37.037 0.00 0.00 0.00 2.59
3853 6028 7.096023 CGTTCTACATTACATCAAGCATCTACC 60.096 40.741 0.00 0.00 0.00 3.18
3854 6029 7.360113 TCTACATTACATCAAGCATCTACCA 57.640 36.000 0.00 0.00 0.00 3.25
3855 6030 7.210174 TCTACATTACATCAAGCATCTACCAC 58.790 38.462 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.431278 TCGCATGAACAGTAAAATCGAAAAA 58.569 32.000 0.00 0.00 0.00 1.94
44 45 5.991568 TCGCATGAACAGTAAAATCGAAAA 58.008 33.333 0.00 0.00 0.00 2.29
45 46 5.599359 TCGCATGAACAGTAAAATCGAAA 57.401 34.783 0.00 0.00 0.00 3.46
46 47 5.599359 TTCGCATGAACAGTAAAATCGAA 57.401 34.783 0.00 0.00 0.00 3.71
47 48 5.599359 TTTCGCATGAACAGTAAAATCGA 57.401 34.783 0.00 0.00 32.71 3.59
48 49 4.260656 GCTTTCGCATGAACAGTAAAATCG 59.739 41.667 0.00 0.00 32.71 3.34
49 50 5.153513 TGCTTTCGCATGAACAGTAAAATC 58.846 37.500 0.00 0.00 42.25 2.17
50 51 5.119931 TGCTTTCGCATGAACAGTAAAAT 57.880 34.783 0.00 0.00 42.25 1.82
51 52 4.560136 TGCTTTCGCATGAACAGTAAAA 57.440 36.364 0.00 0.00 42.25 1.52
64 65 0.510359 CCGAGCTCATATGCTTTCGC 59.490 55.000 15.40 5.36 44.17 4.70
65 66 1.143305 CCCGAGCTCATATGCTTTCG 58.857 55.000 15.40 12.61 44.17 3.46
66 67 1.869767 CACCCGAGCTCATATGCTTTC 59.130 52.381 15.40 0.00 44.17 2.62
67 68 1.959042 CACCCGAGCTCATATGCTTT 58.041 50.000 15.40 0.00 44.17 3.51
68 69 0.533755 GCACCCGAGCTCATATGCTT 60.534 55.000 20.27 0.00 44.17 3.91
70 71 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
71 72 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
72 73 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
73 74 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
74 75 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
75 76 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
76 77 1.817099 CCATTCTGCACCCGAGCTC 60.817 63.158 2.73 2.73 34.99 4.09
77 78 2.270205 CCATTCTGCACCCGAGCT 59.730 61.111 0.00 0.00 34.99 4.09
78 79 2.109126 GTCCATTCTGCACCCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
79 80 0.036010 AAGTCCATTCTGCACCCGAG 60.036 55.000 0.00 0.00 0.00 4.63
80 81 0.400213 AAAGTCCATTCTGCACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
81 82 1.200020 GAAAAGTCCATTCTGCACCCG 59.800 52.381 0.00 0.00 0.00 5.28
82 83 1.200020 CGAAAAGTCCATTCTGCACCC 59.800 52.381 0.00 0.00 0.00 4.61
83 84 2.151202 TCGAAAAGTCCATTCTGCACC 58.849 47.619 0.00 0.00 0.00 5.01
84 85 2.160417 CCTCGAAAAGTCCATTCTGCAC 59.840 50.000 0.00 0.00 0.00 4.57
85 86 2.426522 CCTCGAAAAGTCCATTCTGCA 58.573 47.619 0.00 0.00 0.00 4.41
86 87 1.740025 CCCTCGAAAAGTCCATTCTGC 59.260 52.381 0.00 0.00 0.00 4.26
87 88 3.059352 ACCCTCGAAAAGTCCATTCTG 57.941 47.619 0.00 0.00 0.00 3.02
88 89 4.094476 TCTACCCTCGAAAAGTCCATTCT 58.906 43.478 0.00 0.00 0.00 2.40
89 90 4.159879 TCTCTACCCTCGAAAAGTCCATTC 59.840 45.833 0.00 0.00 0.00 2.67
90 91 4.081586 GTCTCTACCCTCGAAAAGTCCATT 60.082 45.833 0.00 0.00 0.00 3.16
91 92 3.447944 GTCTCTACCCTCGAAAAGTCCAT 59.552 47.826 0.00 0.00 0.00 3.41
92 93 2.824341 GTCTCTACCCTCGAAAAGTCCA 59.176 50.000 0.00 0.00 0.00 4.02
93 94 2.166050 GGTCTCTACCCTCGAAAAGTCC 59.834 54.545 0.00 0.00 40.21 3.85
94 95 3.507103 GGTCTCTACCCTCGAAAAGTC 57.493 52.381 0.00 0.00 40.21 3.01
176 177 6.700520 GCCTATACTGCAGTTTATAACGAACT 59.299 38.462 27.06 0.00 37.82 3.01
177 178 6.477688 TGCCTATACTGCAGTTTATAACGAAC 59.522 38.462 27.06 5.37 36.23 3.95
178 179 6.575267 TGCCTATACTGCAGTTTATAACGAA 58.425 36.000 27.06 3.23 36.23 3.85
179 180 6.151663 TGCCTATACTGCAGTTTATAACGA 57.848 37.500 27.06 4.09 36.23 3.85
180 181 6.090898 GGATGCCTATACTGCAGTTTATAACG 59.909 42.308 27.06 11.02 42.92 3.18
181 182 7.162082 AGGATGCCTATACTGCAGTTTATAAC 58.838 38.462 27.06 13.25 42.92 1.89
182 183 7.316393 AGGATGCCTATACTGCAGTTTATAA 57.684 36.000 27.06 6.71 42.92 0.98
183 184 6.935240 AGGATGCCTATACTGCAGTTTATA 57.065 37.500 27.06 16.30 42.92 0.98
184 185 5.832539 AGGATGCCTATACTGCAGTTTAT 57.167 39.130 27.06 16.01 42.92 1.40
185 186 6.740944 TTAGGATGCCTATACTGCAGTTTA 57.259 37.500 27.06 20.14 42.92 2.01
186 187 5.630415 TTAGGATGCCTATACTGCAGTTT 57.370 39.130 27.06 20.10 42.92 2.66
187 188 5.630415 TTTAGGATGCCTATACTGCAGTT 57.370 39.130 27.06 15.06 42.92 3.16
188 189 5.455326 CCTTTTAGGATGCCTATACTGCAGT 60.455 44.000 25.12 25.12 42.92 4.40
189 190 4.999950 CCTTTTAGGATGCCTATACTGCAG 59.000 45.833 13.48 13.48 42.92 4.41
190 191 4.202461 CCCTTTTAGGATGCCTATACTGCA 60.202 45.833 0.00 0.00 37.67 4.41
191 192 4.202472 ACCCTTTTAGGATGCCTATACTGC 60.202 45.833 0.00 0.00 37.67 4.40
192 193 5.513267 GGACCCTTTTAGGATGCCTATACTG 60.513 48.000 0.00 0.00 37.67 2.74
193 194 4.597940 GGACCCTTTTAGGATGCCTATACT 59.402 45.833 0.00 0.00 37.67 2.12
194 195 4.597940 AGGACCCTTTTAGGATGCCTATAC 59.402 45.833 0.00 0.00 37.67 1.47
195 196 4.839589 AGGACCCTTTTAGGATGCCTATA 58.160 43.478 0.00 0.00 37.67 1.31
196 197 3.681311 AGGACCCTTTTAGGATGCCTAT 58.319 45.455 0.00 0.00 37.67 2.57
197 198 3.145559 AGGACCCTTTTAGGATGCCTA 57.854 47.619 0.00 0.00 37.67 3.93
198 199 1.987080 AGGACCCTTTTAGGATGCCT 58.013 50.000 0.00 0.00 37.67 4.75
199 200 3.945640 TTAGGACCCTTTTAGGATGCC 57.054 47.619 0.00 0.00 37.67 4.40
200 201 4.145052 CCATTAGGACCCTTTTAGGATGC 58.855 47.826 0.00 0.00 35.18 3.91
201 202 5.133221 CACCATTAGGACCCTTTTAGGATG 58.867 45.833 0.00 0.00 36.35 3.51
202 203 4.386424 GCACCATTAGGACCCTTTTAGGAT 60.386 45.833 0.00 0.00 36.35 3.24
203 204 3.053917 GCACCATTAGGACCCTTTTAGGA 60.054 47.826 0.00 0.00 36.35 2.94
204 205 3.288092 GCACCATTAGGACCCTTTTAGG 58.712 50.000 0.00 0.00 38.69 2.69
205 206 3.963129 TGCACCATTAGGACCCTTTTAG 58.037 45.455 0.00 0.00 38.69 1.85
206 207 4.390129 TTGCACCATTAGGACCCTTTTA 57.610 40.909 0.00 0.00 38.69 1.52
207 208 2.990740 TGCACCATTAGGACCCTTTT 57.009 45.000 0.00 0.00 38.69 2.27
208 209 2.990740 TTGCACCATTAGGACCCTTT 57.009 45.000 0.00 0.00 38.69 3.11
209 210 3.473113 AATTGCACCATTAGGACCCTT 57.527 42.857 0.00 0.00 38.69 3.95
210 211 3.473113 AAATTGCACCATTAGGACCCT 57.527 42.857 0.00 0.00 38.69 4.34
211 212 5.869649 ATAAAATTGCACCATTAGGACCC 57.130 39.130 0.00 0.00 38.69 4.46
212 213 8.474831 ACTTTATAAAATTGCACCATTAGGACC 58.525 33.333 0.00 0.00 38.69 4.46
233 234 7.117236 CCGAAAACTGAGCTGTTACATACTTTA 59.883 37.037 0.00 0.00 0.00 1.85
309 310 9.076596 TGATGCATATATTTCTAAGTTCGATCG 57.923 33.333 9.36 9.36 0.00 3.69
337 354 7.887996 TTTTGTTGGCTAATTCTTATGCTTG 57.112 32.000 0.00 0.00 0.00 4.01
370 433 6.785466 AGACCTAACCACCCAAATTTTTATGT 59.215 34.615 0.00 0.00 0.00 2.29
376 439 5.960704 ACTAAGACCTAACCACCCAAATTT 58.039 37.500 0.00 0.00 0.00 1.82
382 445 2.165234 GTCGACTAAGACCTAACCACCC 59.835 54.545 8.70 0.00 35.22 4.61
386 449 5.382618 TTTCAGTCGACTAAGACCTAACC 57.617 43.478 19.57 0.00 41.83 2.85
387 450 7.886405 AAATTTCAGTCGACTAAGACCTAAC 57.114 36.000 19.57 0.00 41.83 2.34
389 452 9.798994 GATTAAATTTCAGTCGACTAAGACCTA 57.201 33.333 19.57 3.73 41.83 3.08
390 453 8.311836 TGATTAAATTTCAGTCGACTAAGACCT 58.688 33.333 19.57 4.73 41.83 3.85
391 454 8.475331 TGATTAAATTTCAGTCGACTAAGACC 57.525 34.615 19.57 2.03 41.83 3.85
392 455 9.959775 CTTGATTAAATTTCAGTCGACTAAGAC 57.040 33.333 19.57 6.42 41.23 3.01
393 456 9.706691 ACTTGATTAAATTTCAGTCGACTAAGA 57.293 29.630 19.57 9.81 0.00 2.10
394 457 9.959775 GACTTGATTAAATTTCAGTCGACTAAG 57.040 33.333 19.57 15.15 0.00 2.18
395 458 9.706691 AGACTTGATTAAATTTCAGTCGACTAA 57.293 29.630 19.57 10.71 31.92 2.24
396 459 9.355215 GAGACTTGATTAAATTTCAGTCGACTA 57.645 33.333 19.57 2.81 31.92 2.59
397 460 7.872993 TGAGACTTGATTAAATTTCAGTCGACT 59.127 33.333 13.58 13.58 31.92 4.18
398 461 8.018677 TGAGACTTGATTAAATTTCAGTCGAC 57.981 34.615 7.70 7.70 31.92 4.20
409 472 8.675705 TGTCACTTGATTGAGACTTGATTAAA 57.324 30.769 0.00 0.00 32.41 1.52
410 473 8.853077 ATGTCACTTGATTGAGACTTGATTAA 57.147 30.769 0.00 0.00 32.41 1.40
411 474 9.942850 TTATGTCACTTGATTGAGACTTGATTA 57.057 29.630 0.00 0.00 32.41 1.75
414 477 7.216494 TGTTATGTCACTTGATTGAGACTTGA 58.784 34.615 0.00 0.00 32.41 3.02
420 483 9.154847 TCTTGTATGTTATGTCACTTGATTGAG 57.845 33.333 0.00 0.00 0.00 3.02
423 486 9.376075 CTCTCTTGTATGTTATGTCACTTGATT 57.624 33.333 0.00 0.00 0.00 2.57
425 488 8.122472 TCTCTCTTGTATGTTATGTCACTTGA 57.878 34.615 0.00 0.00 0.00 3.02
428 491 8.354711 TCTTCTCTCTTGTATGTTATGTCACT 57.645 34.615 0.00 0.00 0.00 3.41
429 492 8.988064 TTCTTCTCTCTTGTATGTTATGTCAC 57.012 34.615 0.00 0.00 0.00 3.67
430 493 9.996554 TTTTCTTCTCTCTTGTATGTTATGTCA 57.003 29.630 0.00 0.00 0.00 3.58
467 530 3.928375 GCATTGAGATCCGTGCAATTTTT 59.072 39.130 0.00 0.00 37.52 1.94
469 532 2.492881 TGCATTGAGATCCGTGCAATTT 59.507 40.909 8.80 0.00 43.83 1.82
470 533 2.093890 TGCATTGAGATCCGTGCAATT 58.906 42.857 8.80 0.00 43.83 2.32
471 534 1.753930 TGCATTGAGATCCGTGCAAT 58.246 45.000 8.80 3.12 43.83 3.56
474 537 1.089920 ACTTGCATTGAGATCCGTGC 58.910 50.000 0.00 0.00 38.05 5.34
475 538 3.005554 AGAACTTGCATTGAGATCCGTG 58.994 45.455 0.00 0.00 0.00 4.94
476 539 3.265791 GAGAACTTGCATTGAGATCCGT 58.734 45.455 0.00 0.00 0.00 4.69
477 540 3.063180 GTGAGAACTTGCATTGAGATCCG 59.937 47.826 0.00 0.00 0.00 4.18
478 541 3.063180 CGTGAGAACTTGCATTGAGATCC 59.937 47.826 0.00 0.00 0.00 3.36
479 542 3.928992 TCGTGAGAACTTGCATTGAGATC 59.071 43.478 0.00 0.00 37.03 2.75
480 543 3.930336 TCGTGAGAACTTGCATTGAGAT 58.070 40.909 0.00 0.00 37.03 2.75
495 558 8.809159 AGTCTCAATTCATGTTATATCGTGAG 57.191 34.615 5.97 0.00 35.25 3.51
499 562 9.995379 CGTTAAGTCTCAATTCATGTTATATCG 57.005 33.333 0.00 0.00 0.00 2.92
505 568 8.567948 ACATTTCGTTAAGTCTCAATTCATGTT 58.432 29.630 0.00 0.00 0.00 2.71
506 569 8.099364 ACATTTCGTTAAGTCTCAATTCATGT 57.901 30.769 0.00 0.00 0.00 3.21
507 570 8.955061 AACATTTCGTTAAGTCTCAATTCATG 57.045 30.769 0.00 0.00 35.52 3.07
509 572 9.268268 ACTAACATTTCGTTAAGTCTCAATTCA 57.732 29.630 0.00 0.00 39.59 2.57
510 573 9.742552 GACTAACATTTCGTTAAGTCTCAATTC 57.257 33.333 0.00 0.00 39.59 2.17
511 574 8.433126 CGACTAACATTTCGTTAAGTCTCAATT 58.567 33.333 0.00 0.00 39.59 2.32
512 575 7.811236 TCGACTAACATTTCGTTAAGTCTCAAT 59.189 33.333 0.00 0.00 39.59 2.57
513 576 7.140705 TCGACTAACATTTCGTTAAGTCTCAA 58.859 34.615 0.00 0.00 39.59 3.02
514 577 6.671190 TCGACTAACATTTCGTTAAGTCTCA 58.329 36.000 0.00 0.00 39.59 3.27
515 578 6.237253 GCTCGACTAACATTTCGTTAAGTCTC 60.237 42.308 0.00 0.00 39.59 3.36
516 579 5.572126 GCTCGACTAACATTTCGTTAAGTCT 59.428 40.000 0.00 0.00 39.59 3.24
517 580 5.496657 CGCTCGACTAACATTTCGTTAAGTC 60.497 44.000 0.00 0.00 39.59 3.01
518 581 4.322804 CGCTCGACTAACATTTCGTTAAGT 59.677 41.667 0.00 0.00 39.59 2.24
519 582 4.556135 TCGCTCGACTAACATTTCGTTAAG 59.444 41.667 0.00 0.00 39.59 1.85
520 583 4.475028 TCGCTCGACTAACATTTCGTTAA 58.525 39.130 0.00 0.00 39.59 2.01
521 584 4.082274 TCGCTCGACTAACATTTCGTTA 57.918 40.909 0.00 0.00 39.14 3.18
522 585 2.915463 CTCGCTCGACTAACATTTCGTT 59.085 45.455 0.00 0.00 41.91 3.85
523 586 2.161012 TCTCGCTCGACTAACATTTCGT 59.839 45.455 0.00 0.00 36.60 3.85
524 587 2.782163 TCTCGCTCGACTAACATTTCG 58.218 47.619 0.00 0.00 36.55 3.46
525 588 5.511088 TTTTCTCGCTCGACTAACATTTC 57.489 39.130 0.00 0.00 0.00 2.17
526 589 4.143094 GCTTTTCTCGCTCGACTAACATTT 60.143 41.667 0.00 0.00 0.00 2.32
527 590 3.368236 GCTTTTCTCGCTCGACTAACATT 59.632 43.478 0.00 0.00 0.00 2.71
528 591 2.924290 GCTTTTCTCGCTCGACTAACAT 59.076 45.455 0.00 0.00 0.00 2.71
529 592 2.287970 TGCTTTTCTCGCTCGACTAACA 60.288 45.455 0.00 0.00 0.00 2.41
530 593 2.325761 TGCTTTTCTCGCTCGACTAAC 58.674 47.619 0.00 0.00 0.00 2.34
531 594 2.717580 TGCTTTTCTCGCTCGACTAA 57.282 45.000 0.00 0.00 0.00 2.24
532 595 2.791503 CGATGCTTTTCTCGCTCGACTA 60.792 50.000 0.00 0.00 33.22 2.59
533 596 1.634702 GATGCTTTTCTCGCTCGACT 58.365 50.000 0.00 0.00 0.00 4.18
534 597 0.296056 CGATGCTTTTCTCGCTCGAC 59.704 55.000 0.00 0.00 33.22 4.20
535 598 0.802222 CCGATGCTTTTCTCGCTCGA 60.802 55.000 0.00 0.00 33.22 4.04
536 599 0.802222 TCCGATGCTTTTCTCGCTCG 60.802 55.000 0.00 0.00 33.63 5.03
537 600 0.647925 GTCCGATGCTTTTCTCGCTC 59.352 55.000 0.00 0.00 33.63 5.03
538 601 0.247736 AGTCCGATGCTTTTCTCGCT 59.752 50.000 0.00 0.00 33.63 4.93
539 602 0.371645 CAGTCCGATGCTTTTCTCGC 59.628 55.000 0.00 0.00 33.63 5.03
540 603 1.996292 TCAGTCCGATGCTTTTCTCG 58.004 50.000 0.00 0.00 34.73 4.04
541 604 3.935203 TGATTCAGTCCGATGCTTTTCTC 59.065 43.478 0.00 0.00 0.00 2.87
542 605 3.937706 CTGATTCAGTCCGATGCTTTTCT 59.062 43.478 5.46 0.00 0.00 2.52
543 606 3.935203 TCTGATTCAGTCCGATGCTTTTC 59.065 43.478 13.23 0.00 32.61 2.29
544 607 3.942829 TCTGATTCAGTCCGATGCTTTT 58.057 40.909 13.23 0.00 32.61 2.27
545 608 3.616956 TCTGATTCAGTCCGATGCTTT 57.383 42.857 13.23 0.00 32.61 3.51
546 609 3.616956 TTCTGATTCAGTCCGATGCTT 57.383 42.857 13.23 0.00 32.61 3.91
547 610 3.834489 ATTCTGATTCAGTCCGATGCT 57.166 42.857 13.23 0.00 32.61 3.79
548 611 4.551603 CGAAATTCTGATTCAGTCCGATGC 60.552 45.833 13.23 0.00 32.61 3.91
549 612 4.551603 GCGAAATTCTGATTCAGTCCGATG 60.552 45.833 13.23 3.16 32.61 3.84
550 613 3.557595 GCGAAATTCTGATTCAGTCCGAT 59.442 43.478 13.23 2.11 32.61 4.18
551 614 2.930040 GCGAAATTCTGATTCAGTCCGA 59.070 45.455 13.23 0.00 32.61 4.55
552 615 2.932614 AGCGAAATTCTGATTCAGTCCG 59.067 45.455 13.23 11.01 32.61 4.79
553 616 4.154918 ACAAGCGAAATTCTGATTCAGTCC 59.845 41.667 13.23 0.00 32.61 3.85
576 639 2.975536 GGTGGCCAGCACGTAGTA 59.024 61.111 29.70 0.00 41.61 1.82
578 641 2.997075 TACGGTGGCCAGCACGTAG 61.997 63.158 32.71 19.04 40.38 3.51
612 675 0.318699 TGAGACGCCGTGAACTGAAG 60.319 55.000 0.00 0.00 0.00 3.02
683 748 2.040544 CCCAATGGAGTCACGGTGC 61.041 63.158 0.00 0.00 0.00 5.01
685 750 1.278127 CTAACCCAATGGAGTCACGGT 59.722 52.381 0.00 0.00 34.81 4.83
686 751 1.278127 ACTAACCCAATGGAGTCACGG 59.722 52.381 0.00 0.00 34.81 4.94
688 753 6.433093 ACAATAAACTAACCCAATGGAGTCAC 59.567 38.462 0.00 0.00 34.81 3.67
697 762 3.845860 TGGGCACAATAAACTAACCCAA 58.154 40.909 0.00 0.00 42.78 4.12
739 950 1.734465 GCGAATCCCAAGTCAGAACTG 59.266 52.381 0.00 0.00 35.36 3.16
759 972 2.249896 CGCGGTCGAGCTAGCTAG 59.750 66.667 19.38 18.55 38.10 3.42
777 1076 2.933906 GACGTCCGGAGAAAATAATGCA 59.066 45.455 3.06 0.00 0.00 3.96
806 1105 0.388134 TAAGACGAGTTGTGAGGCGC 60.388 55.000 0.00 0.00 0.00 6.53
808 1107 2.479275 GGTTTAAGACGAGTTGTGAGGC 59.521 50.000 0.00 0.00 0.00 4.70
814 1113 1.796459 CCGTGGGTTTAAGACGAGTTG 59.204 52.381 0.00 0.00 35.05 3.16
815 1114 1.688197 TCCGTGGGTTTAAGACGAGTT 59.312 47.619 0.00 0.00 35.05 3.01
821 1120 3.581265 AGGTTTTCCGTGGGTTTAAGA 57.419 42.857 0.00 0.00 46.35 2.10
828 1127 2.160813 CACGAAATAGGTTTTCCGTGGG 59.839 50.000 0.00 0.00 46.35 4.61
829 1128 3.465122 CACGAAATAGGTTTTCCGTGG 57.535 47.619 0.00 0.00 46.35 4.94
831 1130 3.069289 GTCCACGAAATAGGTTTTCCGT 58.931 45.455 0.00 0.00 46.35 4.69
833 1132 3.328505 TCGTCCACGAAATAGGTTTTCC 58.671 45.455 0.00 0.00 46.30 3.13
893 1210 5.349817 TGATAATACGAGCGGTACTAGTAGC 59.650 44.000 19.94 19.94 39.47 3.58
894 1211 6.453527 CGTGATAATACGAGCGGTACTAGTAG 60.454 46.154 1.87 0.00 46.46 2.57
895 1212 5.346011 CGTGATAATACGAGCGGTACTAGTA 59.654 44.000 0.00 0.00 46.46 1.82
896 1213 4.151335 CGTGATAATACGAGCGGTACTAGT 59.849 45.833 0.00 0.00 46.46 2.57
904 1221 1.534163 TCTCCCGTGATAATACGAGCG 59.466 52.381 0.00 0.00 46.46 5.03
910 1227 3.548770 ACGTCACTCTCCCGTGATAATA 58.451 45.455 0.00 0.00 44.84 0.98
959 2975 4.788925 AGCTATTTATACAGTTGGGGCA 57.211 40.909 0.00 0.00 0.00 5.36
985 3001 2.288666 GATGCTAAATCAGGACGGCAA 58.711 47.619 0.00 0.00 33.44 4.52
986 3002 1.209261 TGATGCTAAATCAGGACGGCA 59.791 47.619 0.00 0.00 0.00 5.69
997 3013 2.193447 GCGATGTCGACTGATGCTAAA 58.807 47.619 17.92 0.00 43.02 1.85
1049 3074 0.394899 AGTTAATGGGCCTGCTGAGC 60.395 55.000 4.53 0.00 0.00 4.26
1070 3095 2.319219 GCTTAGCAGCAGGATCAGC 58.681 57.895 0.00 0.00 46.49 4.26
1100 3128 1.352404 GAGATGCGCTCGACGTACT 59.648 57.895 9.73 0.00 46.11 2.73
1101 3129 1.654743 GGAGATGCGCTCGACGTAC 60.655 63.158 9.73 0.00 44.91 3.67
1102 3130 2.713770 GGAGATGCGCTCGACGTA 59.286 61.111 9.73 5.24 44.91 3.57
1105 3133 3.838271 TGGGGAGATGCGCTCGAC 61.838 66.667 9.73 4.08 44.91 4.20
1108 3136 0.106708 TAATGTGGGGAGATGCGCTC 59.893 55.000 9.73 3.60 43.17 5.03
1110 3138 0.663153 GTTAATGTGGGGAGATGCGC 59.337 55.000 0.00 0.00 0.00 6.09
1117 3145 2.058705 TGTGTGGAGTTAATGTGGGGA 58.941 47.619 0.00 0.00 0.00 4.81
2012 4040 4.406173 CAGACGCCGTGAGACGCT 62.406 66.667 0.00 0.00 40.91 5.07
2306 4334 2.437359 AGCCACATCTTGAGCGCC 60.437 61.111 2.29 0.00 0.00 6.53
2724 4762 0.400213 AGATTCACCTCGCCCAAACA 59.600 50.000 0.00 0.00 0.00 2.83
2728 4766 1.688735 CATAGAGATTCACCTCGCCCA 59.311 52.381 0.00 0.00 38.19 5.36
2904 4959 6.256912 ACTCAACGGACAAAACTACAAAAA 57.743 33.333 0.00 0.00 0.00 1.94
2905 4960 5.883503 ACTCAACGGACAAAACTACAAAA 57.116 34.783 0.00 0.00 0.00 2.44
2906 4961 5.644636 AGAACTCAACGGACAAAACTACAAA 59.355 36.000 0.00 0.00 0.00 2.83
2907 4962 5.180271 AGAACTCAACGGACAAAACTACAA 58.820 37.500 0.00 0.00 0.00 2.41
2908 4963 4.761975 AGAACTCAACGGACAAAACTACA 58.238 39.130 0.00 0.00 0.00 2.74
2909 4964 4.807304 TGAGAACTCAACGGACAAAACTAC 59.193 41.667 1.79 0.00 36.53 2.73
2910 4965 5.013568 TGAGAACTCAACGGACAAAACTA 57.986 39.130 1.79 0.00 36.53 2.24
2911 4966 3.869065 TGAGAACTCAACGGACAAAACT 58.131 40.909 1.79 0.00 36.53 2.66
2912 4967 4.609691 TTGAGAACTCAACGGACAAAAC 57.390 40.909 12.40 0.00 43.90 2.43
3051 5106 3.830755 AGGATTGAGCAAAAAGAGTGCAT 59.169 39.130 0.00 0.00 44.74 3.96
3052 5107 3.225104 AGGATTGAGCAAAAAGAGTGCA 58.775 40.909 0.00 0.00 44.74 4.57
3053 5108 3.669023 CGAGGATTGAGCAAAAAGAGTGC 60.669 47.826 0.00 0.00 42.55 4.40
3054 5109 3.499918 ACGAGGATTGAGCAAAAAGAGTG 59.500 43.478 0.00 0.00 0.00 3.51
3055 5110 3.744660 ACGAGGATTGAGCAAAAAGAGT 58.255 40.909 0.00 0.00 0.00 3.24
3056 5111 3.181526 CGACGAGGATTGAGCAAAAAGAG 60.182 47.826 0.00 0.00 0.00 2.85
3057 5112 2.736721 CGACGAGGATTGAGCAAAAAGA 59.263 45.455 0.00 0.00 0.00 2.52
3058 5113 2.726066 GCGACGAGGATTGAGCAAAAAG 60.726 50.000 0.00 0.00 0.00 2.27
3059 5114 1.196808 GCGACGAGGATTGAGCAAAAA 59.803 47.619 0.00 0.00 0.00 1.94
3068 5123 0.179100 CATCACCAGCGACGAGGATT 60.179 55.000 12.91 0.00 0.00 3.01
3071 5126 2.021068 ATCCATCACCAGCGACGAGG 62.021 60.000 0.00 1.51 0.00 4.63
3072 5127 0.179100 AATCCATCACCAGCGACGAG 60.179 55.000 0.00 0.00 0.00 4.18
3073 5128 0.179111 GAATCCATCACCAGCGACGA 60.179 55.000 0.00 0.00 0.00 4.20
3076 5131 2.013563 GCTTGAATCCATCACCAGCGA 61.014 52.381 0.00 0.00 37.92 4.93
3077 5132 0.379669 GCTTGAATCCATCACCAGCG 59.620 55.000 0.00 0.00 37.92 5.18
3078 5133 0.379669 CGCTTGAATCCATCACCAGC 59.620 55.000 0.00 0.00 38.16 4.85
3079 5134 1.938577 CTCGCTTGAATCCATCACCAG 59.061 52.381 0.00 0.00 37.92 4.00
3080 5135 1.278985 ACTCGCTTGAATCCATCACCA 59.721 47.619 0.00 0.00 37.92 4.17
3081 5136 2.029838 ACTCGCTTGAATCCATCACC 57.970 50.000 0.00 0.00 37.92 4.02
3082 5137 5.505286 CAATTACTCGCTTGAATCCATCAC 58.495 41.667 0.00 0.00 37.92 3.06
3083 5138 4.035558 GCAATTACTCGCTTGAATCCATCA 59.964 41.667 0.00 0.00 35.85 3.07
3084 5139 4.274459 AGCAATTACTCGCTTGAATCCATC 59.726 41.667 0.00 0.00 33.81 3.51
3085 5140 4.036027 CAGCAATTACTCGCTTGAATCCAT 59.964 41.667 0.00 0.00 35.96 3.41
3086 5141 3.374988 CAGCAATTACTCGCTTGAATCCA 59.625 43.478 0.00 0.00 35.96 3.41
3087 5142 3.242870 CCAGCAATTACTCGCTTGAATCC 60.243 47.826 0.00 0.00 35.96 3.01
3088 5143 3.623060 TCCAGCAATTACTCGCTTGAATC 59.377 43.478 0.00 0.00 35.96 2.52
3089 5144 3.609853 TCCAGCAATTACTCGCTTGAAT 58.390 40.909 0.00 0.00 35.96 2.57
3099 5154 4.829064 TCGCCAATTATCCAGCAATTAC 57.171 40.909 0.00 0.00 0.00 1.89
3122 5177 0.898320 ACCATCTGAGTTGTCCTCGG 59.102 55.000 0.00 0.00 46.39 4.63
3147 5202 2.231478 TGGGTTCGTTTCAGCACAAAAA 59.769 40.909 0.00 0.00 0.00 1.94
3167 5266 5.665459 CCCAGTCTAGACTTGAACCTAATG 58.335 45.833 23.01 8.39 40.20 1.90
3168 5267 4.162509 GCCCAGTCTAGACTTGAACCTAAT 59.837 45.833 23.01 0.00 40.20 1.73
3170 5269 3.097614 GCCCAGTCTAGACTTGAACCTA 58.902 50.000 23.01 0.00 40.20 3.08
3171 5270 1.903183 GCCCAGTCTAGACTTGAACCT 59.097 52.381 23.01 0.00 40.20 3.50
3173 5272 3.526534 GATGCCCAGTCTAGACTTGAAC 58.473 50.000 23.01 14.59 40.20 3.18
3176 5275 1.202463 CCGATGCCCAGTCTAGACTTG 60.202 57.143 23.01 18.91 40.20 3.16
3177 5276 1.115467 CCGATGCCCAGTCTAGACTT 58.885 55.000 23.01 8.25 40.20 3.01
3178 5277 0.033011 ACCGATGCCCAGTCTAGACT 60.033 55.000 20.00 20.00 43.61 3.24
3179 5278 0.103208 CACCGATGCCCAGTCTAGAC 59.897 60.000 15.41 15.41 0.00 2.59
3180 5279 0.033503 TCACCGATGCCCAGTCTAGA 60.034 55.000 0.00 0.00 0.00 2.43
3188 5287 1.447317 AAATGCGATCACCGATGCCC 61.447 55.000 0.00 0.00 41.76 5.36
3189 5288 0.381801 AAAATGCGATCACCGATGCC 59.618 50.000 0.00 0.00 41.76 4.40
3195 5294 7.992180 AATAAATTCAGAAAATGCGATCACC 57.008 32.000 0.00 0.00 0.00 4.02
3222 5321 7.326789 CACTGAACGAACATTGCAGAAAAATAT 59.673 33.333 0.00 0.00 0.00 1.28
3223 5322 6.636447 CACTGAACGAACATTGCAGAAAAATA 59.364 34.615 0.00 0.00 0.00 1.40
3229 5328 2.832563 TCACTGAACGAACATTGCAGA 58.167 42.857 0.00 0.00 0.00 4.26
3231 5330 4.362932 TTTTCACTGAACGAACATTGCA 57.637 36.364 0.00 0.00 0.00 4.08
3234 5333 8.154649 AGTATCTTTTTCACTGAACGAACATT 57.845 30.769 0.00 0.00 0.00 2.71
3254 5353 7.934665 TGACACCTCATAGTCTAGAAGAGTATC 59.065 40.741 0.00 0.00 38.46 2.24
3255 5354 7.807198 TGACACCTCATAGTCTAGAAGAGTAT 58.193 38.462 0.00 0.00 40.52 2.12
3256 5355 7.196637 TGACACCTCATAGTCTAGAAGAGTA 57.803 40.000 0.00 0.00 34.88 2.59
3257 5356 6.068461 TGACACCTCATAGTCTAGAAGAGT 57.932 41.667 0.00 0.00 35.81 3.24
3258 5357 7.581213 ATTGACACCTCATAGTCTAGAAGAG 57.419 40.000 0.00 0.00 35.81 2.85
3259 5358 7.962995 AATTGACACCTCATAGTCTAGAAGA 57.037 36.000 0.00 0.00 35.81 2.87
3260 5359 7.433719 CGAAATTGACACCTCATAGTCTAGAAG 59.566 40.741 0.00 0.00 35.81 2.85
3261 5360 7.093902 ACGAAATTGACACCTCATAGTCTAGAA 60.094 37.037 0.00 0.00 35.81 2.10
3262 5361 6.377429 ACGAAATTGACACCTCATAGTCTAGA 59.623 38.462 0.00 0.00 35.81 2.43
3263 5362 6.565234 ACGAAATTGACACCTCATAGTCTAG 58.435 40.000 0.00 0.00 35.81 2.43
3264 5363 6.152154 TGACGAAATTGACACCTCATAGTCTA 59.848 38.462 0.00 0.00 35.81 2.59
3265 5364 5.047306 TGACGAAATTGACACCTCATAGTCT 60.047 40.000 0.00 0.00 35.81 3.24
3266 5365 5.168569 TGACGAAATTGACACCTCATAGTC 58.831 41.667 0.00 0.00 35.37 2.59
3267 5366 5.147330 TGACGAAATTGACACCTCATAGT 57.853 39.130 0.00 0.00 0.00 2.12
3268 5367 6.536582 AGATTGACGAAATTGACACCTCATAG 59.463 38.462 0.00 0.00 0.00 2.23
3269 5368 6.406370 AGATTGACGAAATTGACACCTCATA 58.594 36.000 0.00 0.00 0.00 2.15
3270 5369 5.248640 AGATTGACGAAATTGACACCTCAT 58.751 37.500 0.00 0.00 0.00 2.90
3271 5370 4.641396 AGATTGACGAAATTGACACCTCA 58.359 39.130 0.00 0.00 0.00 3.86
3272 5371 6.035112 GTCTAGATTGACGAAATTGACACCTC 59.965 42.308 0.00 0.00 0.00 3.85
3273 5372 5.869888 GTCTAGATTGACGAAATTGACACCT 59.130 40.000 0.00 0.00 0.00 4.00
3274 5373 6.095947 GTCTAGATTGACGAAATTGACACC 57.904 41.667 0.00 0.00 0.00 4.16
3294 5393 2.606551 CGAGCATGCTACATCATCGTCT 60.607 50.000 22.74 0.00 0.00 4.18
3295 5394 1.718178 CGAGCATGCTACATCATCGTC 59.282 52.381 22.74 2.96 0.00 4.20
3297 5396 1.718178 GTCGAGCATGCTACATCATCG 59.282 52.381 22.74 18.04 0.00 3.84
3298 5397 2.064762 GGTCGAGCATGCTACATCATC 58.935 52.381 22.74 5.40 0.00 2.92
3299 5398 1.413812 TGGTCGAGCATGCTACATCAT 59.586 47.619 22.74 0.00 0.00 2.45
3300 5399 0.823460 TGGTCGAGCATGCTACATCA 59.177 50.000 22.74 13.76 0.00 3.07
3301 5400 1.594862 GTTGGTCGAGCATGCTACATC 59.405 52.381 22.74 11.02 0.00 3.06
3303 5402 0.320050 TGTTGGTCGAGCATGCTACA 59.680 50.000 22.74 17.30 0.00 2.74
3304 5403 1.656652 ATGTTGGTCGAGCATGCTAC 58.343 50.000 22.74 16.33 0.00 3.58
3305 5404 3.392882 CATATGTTGGTCGAGCATGCTA 58.607 45.455 22.74 2.30 0.00 3.49
3306 5405 2.216046 CATATGTTGGTCGAGCATGCT 58.784 47.619 22.92 22.92 0.00 3.79
3307 5406 1.334419 GCATATGTTGGTCGAGCATGC 60.334 52.381 19.37 19.93 0.00 4.06
3308 5407 1.070376 CGCATATGTTGGTCGAGCATG 60.070 52.381 19.37 14.07 0.00 4.06
3309 5408 1.220529 CGCATATGTTGGTCGAGCAT 58.779 50.000 19.37 6.27 0.00 3.79
3310 5409 0.108377 ACGCATATGTTGGTCGAGCA 60.108 50.000 14.39 14.39 0.00 4.26
3311 5410 0.301687 CACGCATATGTTGGTCGAGC 59.698 55.000 7.89 7.89 0.00 5.03
3312 5411 0.301687 GCACGCATATGTTGGTCGAG 59.698 55.000 4.29 0.00 0.00 4.04
3313 5412 0.390472 TGCACGCATATGTTGGTCGA 60.390 50.000 4.29 0.00 0.00 4.20
3314 5413 0.657312 ATGCACGCATATGTTGGTCG 59.343 50.000 1.86 1.35 34.49 4.79
3315 5414 3.423515 CGATATGCACGCATATGTTGGTC 60.424 47.826 25.20 12.11 46.16 4.02
3316 5415 2.480037 CGATATGCACGCATATGTTGGT 59.520 45.455 25.20 4.94 46.16 3.67
3317 5416 2.736192 TCGATATGCACGCATATGTTGG 59.264 45.455 25.20 13.31 46.16 3.77
3328 5427 3.583806 CCTTCAGGAGATCGATATGCAC 58.416 50.000 14.16 0.00 37.39 4.57
3330 5429 2.828520 TCCCTTCAGGAGATCGATATGC 59.171 50.000 3.01 3.01 40.93 3.14
3365 5466 4.651778 TGTTGTGCTAATAAAGGAGCTGT 58.348 39.130 0.00 0.00 39.54 4.40
3445 5554 0.037139 CATCCAAACCCGTACGTGGA 60.037 55.000 22.80 22.80 44.07 4.02
3512 5687 5.570205 TCTAGGAGTATGTAGGTCAGAGG 57.430 47.826 0.00 0.00 0.00 3.69
3536 5711 7.988028 GGTCAGAGGATATGCTTTATTATACCC 59.012 40.741 0.00 0.00 0.00 3.69
3728 5903 9.860898 GGAATTCATGTTTGCTCTTTTAATAGT 57.139 29.630 7.93 0.00 0.00 2.12
3729 5904 9.305925 GGGAATTCATGTTTGCTCTTTTAATAG 57.694 33.333 7.93 0.00 0.00 1.73
3731 5906 7.038088 AGGGGAATTCATGTTTGCTCTTTTAAT 60.038 33.333 7.93 0.00 0.00 1.40
3733 5908 5.779771 AGGGGAATTCATGTTTGCTCTTTTA 59.220 36.000 7.93 0.00 0.00 1.52
3734 5909 4.594491 AGGGGAATTCATGTTTGCTCTTTT 59.406 37.500 7.93 0.00 0.00 2.27
3735 5910 4.162651 AGGGGAATTCATGTTTGCTCTTT 58.837 39.130 7.93 0.00 0.00 2.52
3736 5911 3.782992 AGGGGAATTCATGTTTGCTCTT 58.217 40.909 7.93 0.00 0.00 2.85
3738 5913 5.659440 TTTAGGGGAATTCATGTTTGCTC 57.341 39.130 7.93 0.00 0.00 4.26
3739 5914 5.279960 GGTTTTAGGGGAATTCATGTTTGCT 60.280 40.000 7.93 0.00 0.00 3.91
3740 5915 4.935205 GGTTTTAGGGGAATTCATGTTTGC 59.065 41.667 7.93 0.00 0.00 3.68
3741 5916 5.931724 GTGGTTTTAGGGGAATTCATGTTTG 59.068 40.000 7.93 0.00 0.00 2.93
3743 5918 5.011635 GTGTGGTTTTAGGGGAATTCATGTT 59.988 40.000 7.93 0.00 0.00 2.71
3744 5919 4.526650 GTGTGGTTTTAGGGGAATTCATGT 59.473 41.667 7.93 0.00 0.00 3.21
3745 5920 4.081697 GGTGTGGTTTTAGGGGAATTCATG 60.082 45.833 7.93 0.00 0.00 3.07
3747 5922 3.117093 TGGTGTGGTTTTAGGGGAATTCA 60.117 43.478 7.93 0.00 0.00 2.57
3748 5923 3.257375 GTGGTGTGGTTTTAGGGGAATTC 59.743 47.826 0.00 0.00 0.00 2.17
3749 5924 3.236047 GTGGTGTGGTTTTAGGGGAATT 58.764 45.455 0.00 0.00 0.00 2.17
3750 5925 2.178106 TGTGGTGTGGTTTTAGGGGAAT 59.822 45.455 0.00 0.00 0.00 3.01
3751 5926 1.569548 TGTGGTGTGGTTTTAGGGGAA 59.430 47.619 0.00 0.00 0.00 3.97
3752 5927 1.223501 TGTGGTGTGGTTTTAGGGGA 58.776 50.000 0.00 0.00 0.00 4.81
3753 5928 2.074729 TTGTGGTGTGGTTTTAGGGG 57.925 50.000 0.00 0.00 0.00 4.79
3754 5929 4.141824 ACATTTTGTGGTGTGGTTTTAGGG 60.142 41.667 0.00 0.00 0.00 3.53
3755 5930 5.017294 ACATTTTGTGGTGTGGTTTTAGG 57.983 39.130 0.00 0.00 0.00 2.69
3756 5931 6.474102 GTGTACATTTTGTGGTGTGGTTTTAG 59.526 38.462 0.00 0.00 0.00 1.85
3758 5933 5.172205 GTGTACATTTTGTGGTGTGGTTTT 58.828 37.500 0.00 0.00 0.00 2.43
3759 5934 4.220821 TGTGTACATTTTGTGGTGTGGTTT 59.779 37.500 0.00 0.00 0.00 3.27
3760 5935 3.764434 TGTGTACATTTTGTGGTGTGGTT 59.236 39.130 0.00 0.00 0.00 3.67
3761 5936 3.357203 TGTGTACATTTTGTGGTGTGGT 58.643 40.909 0.00 0.00 0.00 4.16
3762 5937 3.629855 TCTGTGTACATTTTGTGGTGTGG 59.370 43.478 0.00 0.00 0.00 4.17
3764 5939 4.947388 ACTTCTGTGTACATTTTGTGGTGT 59.053 37.500 0.00 0.00 0.00 4.16
3765 5940 5.499139 ACTTCTGTGTACATTTTGTGGTG 57.501 39.130 0.00 0.00 0.00 4.17
3766 5941 5.529800 GGTACTTCTGTGTACATTTTGTGGT 59.470 40.000 0.00 0.00 43.17 4.16
3767 5942 5.529430 TGGTACTTCTGTGTACATTTTGTGG 59.471 40.000 0.00 0.00 43.17 4.17
3768 5943 6.481976 TCTGGTACTTCTGTGTACATTTTGTG 59.518 38.462 0.00 0.00 43.17 3.33
3769 5944 6.588204 TCTGGTACTTCTGTGTACATTTTGT 58.412 36.000 0.00 0.00 43.17 2.83
3770 5945 6.929049 TCTCTGGTACTTCTGTGTACATTTTG 59.071 38.462 0.00 0.00 43.17 2.44
3771 5946 6.929606 GTCTCTGGTACTTCTGTGTACATTTT 59.070 38.462 0.00 0.00 43.17 1.82
3772 5947 6.456501 GTCTCTGGTACTTCTGTGTACATTT 58.543 40.000 0.00 0.00 43.17 2.32
3773 5948 5.335740 CGTCTCTGGTACTTCTGTGTACATT 60.336 44.000 0.00 0.00 43.17 2.71
3777 5952 3.748083 ACGTCTCTGGTACTTCTGTGTA 58.252 45.455 0.00 0.00 0.00 2.90
3778 5953 2.584236 ACGTCTCTGGTACTTCTGTGT 58.416 47.619 0.00 0.00 0.00 3.72
3779 5954 3.644884 AACGTCTCTGGTACTTCTGTG 57.355 47.619 0.00 0.00 0.00 3.66
3780 5955 3.635373 TCAAACGTCTCTGGTACTTCTGT 59.365 43.478 0.00 0.00 0.00 3.41
3781 5956 4.238761 TCAAACGTCTCTGGTACTTCTG 57.761 45.455 0.00 0.00 0.00 3.02
3782 5957 4.379603 CGATCAAACGTCTCTGGTACTTCT 60.380 45.833 0.00 0.00 0.00 2.85
3783 5958 3.852536 CGATCAAACGTCTCTGGTACTTC 59.147 47.826 0.00 0.00 0.00 3.01
3785 5960 3.079578 TCGATCAAACGTCTCTGGTACT 58.920 45.455 0.00 0.00 34.70 2.73
3786 5961 3.482722 TCGATCAAACGTCTCTGGTAC 57.517 47.619 0.00 0.00 34.70 3.34
3787 5962 3.066342 GGATCGATCAAACGTCTCTGGTA 59.934 47.826 25.93 0.00 34.70 3.25
3789 5964 2.464865 GGATCGATCAAACGTCTCTGG 58.535 52.381 25.93 0.00 34.70 3.86
3792 5967 2.159226 AGTGGGATCGATCAAACGTCTC 60.159 50.000 25.93 6.61 34.70 3.36
3793 5968 1.825474 AGTGGGATCGATCAAACGTCT 59.175 47.619 25.93 14.00 34.70 4.18
3794 5969 2.295253 AGTGGGATCGATCAAACGTC 57.705 50.000 25.93 8.04 34.70 4.34
3795 5970 3.880047 TTAGTGGGATCGATCAAACGT 57.120 42.857 25.93 14.29 34.70 3.99
3797 5972 7.548196 TGTAAATTAGTGGGATCGATCAAAC 57.452 36.000 25.93 21.24 0.00 2.93
3800 5975 6.042666 TGGATGTAAATTAGTGGGATCGATCA 59.957 38.462 25.93 5.17 0.00 2.92
3801 5976 6.464222 TGGATGTAAATTAGTGGGATCGATC 58.536 40.000 17.36 17.36 0.00 3.69
3802 5977 6.433847 TGGATGTAAATTAGTGGGATCGAT 57.566 37.500 0.00 0.00 0.00 3.59
3803 5978 5.880164 TGGATGTAAATTAGTGGGATCGA 57.120 39.130 0.00 0.00 0.00 3.59
3805 5980 5.820947 ACGTTGGATGTAAATTAGTGGGATC 59.179 40.000 0.00 0.00 0.00 3.36
3806 5981 5.751586 ACGTTGGATGTAAATTAGTGGGAT 58.248 37.500 0.00 0.00 0.00 3.85
3808 5983 5.646360 AGAACGTTGGATGTAAATTAGTGGG 59.354 40.000 5.00 0.00 0.00 4.61
3809 5984 6.737254 AGAACGTTGGATGTAAATTAGTGG 57.263 37.500 5.00 0.00 0.00 4.00
3810 5985 8.246908 TGTAGAACGTTGGATGTAAATTAGTG 57.753 34.615 5.00 0.00 0.00 2.74
3811 5986 9.444600 AATGTAGAACGTTGGATGTAAATTAGT 57.555 29.630 5.00 0.00 0.00 2.24
3814 5989 9.221933 TGTAATGTAGAACGTTGGATGTAAATT 57.778 29.630 5.00 0.00 0.00 1.82
3815 5990 8.780846 TGTAATGTAGAACGTTGGATGTAAAT 57.219 30.769 5.00 0.00 0.00 1.40
3816 5991 8.780846 ATGTAATGTAGAACGTTGGATGTAAA 57.219 30.769 5.00 0.00 0.00 2.01
3817 5992 8.035984 TGATGTAATGTAGAACGTTGGATGTAA 58.964 33.333 5.00 0.00 0.00 2.41
3818 5993 7.548967 TGATGTAATGTAGAACGTTGGATGTA 58.451 34.615 5.00 0.00 0.00 2.29
3819 5994 6.403049 TGATGTAATGTAGAACGTTGGATGT 58.597 36.000 5.00 0.00 0.00 3.06
3820 5995 6.902224 TGATGTAATGTAGAACGTTGGATG 57.098 37.500 5.00 0.00 0.00 3.51
3821 5996 6.037172 GCTTGATGTAATGTAGAACGTTGGAT 59.963 38.462 5.00 0.00 0.00 3.41
3822 5997 5.350365 GCTTGATGTAATGTAGAACGTTGGA 59.650 40.000 5.00 0.00 0.00 3.53
3823 5998 5.121611 TGCTTGATGTAATGTAGAACGTTGG 59.878 40.000 5.00 0.00 0.00 3.77
3824 5999 6.164408 TGCTTGATGTAATGTAGAACGTTG 57.836 37.500 5.00 0.00 0.00 4.10
3825 6000 6.818644 AGATGCTTGATGTAATGTAGAACGTT 59.181 34.615 0.00 0.00 0.00 3.99
3826 6001 6.341316 AGATGCTTGATGTAATGTAGAACGT 58.659 36.000 0.00 0.00 0.00 3.99
3827 6002 6.834959 AGATGCTTGATGTAATGTAGAACG 57.165 37.500 0.00 0.00 0.00 3.95
3828 6003 7.710907 TGGTAGATGCTTGATGTAATGTAGAAC 59.289 37.037 0.00 0.00 0.00 3.01
3829 6004 7.710907 GTGGTAGATGCTTGATGTAATGTAGAA 59.289 37.037 0.00 0.00 0.00 2.10
3830 6005 7.210174 GTGGTAGATGCTTGATGTAATGTAGA 58.790 38.462 0.00 0.00 0.00 2.59
3831 6006 7.413475 GTGGTAGATGCTTGATGTAATGTAG 57.587 40.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.