Multiple sequence alignment - TraesCS3D01G304400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G304400 chr3D 100.000 4013 0 0 1 4013 418717012 418721024 0.000000e+00 7411
1 TraesCS3D01G304400 chr3D 98.377 308 3 2 1 306 571552799 571552492 1.270000e-149 540
2 TraesCS3D01G304400 chr3D 97.059 306 6 3 1 304 464719346 464719042 2.770000e-141 512
3 TraesCS3D01G304400 chr3D 97.059 68 2 0 305 372 75735174 75735107 9.110000e-22 115
4 TraesCS3D01G304400 chr3A 96.344 3638 100 17 381 4013 532471277 532467668 0.000000e+00 5951
5 TraesCS3D01G304400 chr3B 97.836 2819 60 1 580 3398 545048181 545050998 0.000000e+00 4867
6 TraesCS3D01G304400 chr3B 97.645 637 13 2 3378 4013 545051013 545051648 0.000000e+00 1092
7 TraesCS3D01G304400 chr3B 90.196 204 12 5 381 582 545047881 545048078 3.980000e-65 259
8 TraesCS3D01G304400 chr7D 97.411 309 4 3 1 306 146089514 146089207 1.280000e-144 523
9 TraesCS3D01G304400 chr2D 97.394 307 6 2 1 306 547036828 547037133 4.600000e-144 521
10 TraesCS3D01G304400 chr5D 76.729 911 195 14 1955 2856 515251713 515250811 3.600000e-135 492
11 TraesCS3D01G304400 chr6B 94.375 320 16 2 1 318 630861188 630861507 1.300000e-134 490
12 TraesCS3D01G304400 chr6B 94.805 308 14 2 1 306 632844384 632844077 2.810000e-131 479
13 TraesCS3D01G304400 chr6B 94.481 308 15 2 1 306 565698571 565698878 1.310000e-129 473
14 TraesCS3D01G304400 chr6B 97.059 68 2 0 305 372 11399488 11399421 9.110000e-22 115
15 TraesCS3D01G304400 chr6B 97.059 68 2 0 305 372 349469376 349469309 9.110000e-22 115
16 TraesCS3D01G304400 chr1A 95.455 308 12 2 1 306 7794391 7794698 1.300000e-134 490
17 TraesCS3D01G304400 chr4B 94.340 318 17 1 1 317 586455151 586454834 1.680000e-133 486
18 TraesCS3D01G304400 chr4B 92.000 75 5 1 305 379 5011085 5011158 1.970000e-18 104
19 TraesCS3D01G304400 chr5A 76.175 915 199 17 1953 2856 643365198 643364292 7.860000e-127 464
20 TraesCS3D01G304400 chr2B 97.222 72 2 0 305 376 141909576 141909505 5.450000e-24 122
21 TraesCS3D01G304400 chr2B 95.833 72 2 1 305 376 141871013 141870943 9.110000e-22 115
22 TraesCS3D01G304400 chr7A 97.101 69 2 0 305 373 161272630 161272562 2.530000e-22 117
23 TraesCS3D01G304400 chr6A 97.059 68 2 0 305 372 70928706 70928639 9.110000e-22 115
24 TraesCS3D01G304400 chr6D 97.015 67 2 0 305 371 80722266 80722200 3.280000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G304400 chr3D 418717012 418721024 4012 False 7411.000000 7411 100.000000 1 4013 1 chr3D.!!$F1 4012
1 TraesCS3D01G304400 chr3A 532467668 532471277 3609 True 5951.000000 5951 96.344000 381 4013 1 chr3A.!!$R1 3632
2 TraesCS3D01G304400 chr3B 545047881 545051648 3767 False 2072.666667 4867 95.225667 381 4013 3 chr3B.!!$F1 3632
3 TraesCS3D01G304400 chr5D 515250811 515251713 902 True 492.000000 492 76.729000 1955 2856 1 chr5D.!!$R1 901
4 TraesCS3D01G304400 chr5A 643364292 643365198 906 True 464.000000 464 76.175000 1953 2856 1 chr5A.!!$R1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.102481 ACGGCTAGATGCTACAACCG 59.898 55.0 0.0 0.0 44.49 4.44 F
133 134 0.250510 TGCTACAACCGTCAATGCCA 60.251 50.0 0.0 0.0 0.00 4.92 F
1285 1394 0.321564 TGTGTTTGCCATCCTCTCCG 60.322 55.0 0.0 0.0 0.00 4.63 F
2139 2248 0.318699 TCGCTGTGAAGAAGGTGTCG 60.319 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1953 0.036858 GGACTGAGCCTTCTGACCAC 60.037 60.000 0.00 0.00 37.17 4.16 R
1946 2055 6.496565 ACATAGCTCAGCATACCTTAGATTCT 59.503 38.462 0.00 0.00 0.00 2.40 R
2763 2877 0.097674 GTGCTAAGCATGCTTCACCG 59.902 55.000 35.10 21.68 41.91 4.94 R
3189 3303 0.613260 TCTCCATGTACCCACTGTGC 59.387 55.000 1.29 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.170292 AGCATAGTTCTTTTGCTGCAAG 57.830 40.909 15.39 5.04 44.63 4.01
41 42 4.345337 GGCACGGCTAGATGCTAC 57.655 61.111 12.18 0.00 41.74 3.58
42 43 1.441729 GGCACGGCTAGATGCTACA 59.558 57.895 12.18 0.00 41.74 2.74
43 44 0.179084 GGCACGGCTAGATGCTACAA 60.179 55.000 12.18 0.00 41.74 2.41
44 45 0.931005 GCACGGCTAGATGCTACAAC 59.069 55.000 0.00 0.00 42.39 3.32
45 46 1.571919 CACGGCTAGATGCTACAACC 58.428 55.000 0.00 0.00 42.39 3.77
46 47 0.102481 ACGGCTAGATGCTACAACCG 59.898 55.000 0.00 0.00 44.49 4.44
47 48 0.384309 CGGCTAGATGCTACAACCGA 59.616 55.000 0.00 0.00 41.61 4.69
48 49 1.000163 CGGCTAGATGCTACAACCGAT 60.000 52.381 0.00 0.00 41.61 4.18
49 50 2.408050 GGCTAGATGCTACAACCGATG 58.592 52.381 0.00 0.00 42.39 3.84
50 51 2.035961 GGCTAGATGCTACAACCGATGA 59.964 50.000 0.00 0.00 42.39 2.92
51 52 3.306364 GGCTAGATGCTACAACCGATGAT 60.306 47.826 0.00 0.00 42.39 2.45
52 53 3.677121 GCTAGATGCTACAACCGATGATG 59.323 47.826 0.00 0.00 38.95 3.07
53 54 4.559502 GCTAGATGCTACAACCGATGATGA 60.560 45.833 0.00 0.00 38.95 2.92
54 55 4.406648 AGATGCTACAACCGATGATGAA 57.593 40.909 0.00 0.00 0.00 2.57
55 56 4.769688 AGATGCTACAACCGATGATGAAA 58.230 39.130 0.00 0.00 0.00 2.69
56 57 5.185454 AGATGCTACAACCGATGATGAAAA 58.815 37.500 0.00 0.00 0.00 2.29
57 58 5.647658 AGATGCTACAACCGATGATGAAAAA 59.352 36.000 0.00 0.00 0.00 1.94
58 59 5.895636 TGCTACAACCGATGATGAAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
59 60 5.639757 TGCTACAACCGATGATGAAAAATG 58.360 37.500 0.00 0.00 0.00 2.32
60 61 5.182950 TGCTACAACCGATGATGAAAAATGT 59.817 36.000 0.00 0.00 0.00 2.71
61 62 6.092748 GCTACAACCGATGATGAAAAATGTT 58.907 36.000 0.00 0.00 0.00 2.71
62 63 6.033831 GCTACAACCGATGATGAAAAATGTTG 59.966 38.462 0.00 0.00 38.18 3.33
63 64 4.685628 ACAACCGATGATGAAAAATGTTGC 59.314 37.500 0.00 0.00 36.26 4.17
64 65 4.517952 ACCGATGATGAAAAATGTTGCA 57.482 36.364 0.00 0.00 0.00 4.08
65 66 4.880759 ACCGATGATGAAAAATGTTGCAA 58.119 34.783 0.00 0.00 0.00 4.08
66 67 4.685628 ACCGATGATGAAAAATGTTGCAAC 59.314 37.500 22.83 22.83 0.00 4.17
67 68 4.201513 CCGATGATGAAAAATGTTGCAACG 60.202 41.667 23.79 7.17 0.00 4.10
68 69 4.201513 CGATGATGAAAAATGTTGCAACGG 60.202 41.667 23.79 0.00 0.00 4.44
69 70 4.052159 TGATGAAAAATGTTGCAACGGT 57.948 36.364 23.79 12.83 0.00 4.83
70 71 4.437239 TGATGAAAAATGTTGCAACGGTT 58.563 34.783 23.79 17.76 0.00 4.44
71 72 4.872691 TGATGAAAAATGTTGCAACGGTTT 59.127 33.333 23.79 21.94 0.00 3.27
72 73 5.352569 TGATGAAAAATGTTGCAACGGTTTT 59.647 32.000 28.85 28.85 33.60 2.43
73 74 6.535150 TGATGAAAAATGTTGCAACGGTTTTA 59.465 30.769 29.68 22.54 32.63 1.52
74 75 6.095947 TGAAAAATGTTGCAACGGTTTTAC 57.904 33.333 29.68 23.94 32.63 2.01
75 76 5.063564 TGAAAAATGTTGCAACGGTTTTACC 59.936 36.000 29.68 25.30 32.63 2.85
76 77 3.802948 AATGTTGCAACGGTTTTACCA 57.197 38.095 23.79 4.09 38.47 3.25
77 78 2.853731 TGTTGCAACGGTTTTACCAG 57.146 45.000 23.79 0.00 38.47 4.00
78 79 1.202313 TGTTGCAACGGTTTTACCAGC 60.202 47.619 23.79 0.00 38.47 4.85
79 80 1.103803 TTGCAACGGTTTTACCAGCA 58.896 45.000 0.00 0.00 38.47 4.41
80 81 1.103803 TGCAACGGTTTTACCAGCAA 58.896 45.000 0.00 0.00 38.47 3.91
81 82 1.683917 TGCAACGGTTTTACCAGCAAT 59.316 42.857 0.00 0.00 38.47 3.56
82 83 2.058057 GCAACGGTTTTACCAGCAATG 58.942 47.619 0.00 0.00 38.47 2.82
83 84 2.287909 GCAACGGTTTTACCAGCAATGA 60.288 45.455 0.00 0.00 38.47 2.57
84 85 3.797184 GCAACGGTTTTACCAGCAATGAA 60.797 43.478 0.00 0.00 38.47 2.57
85 86 4.363999 CAACGGTTTTACCAGCAATGAAA 58.636 39.130 0.00 0.00 38.47 2.69
86 87 4.657436 ACGGTTTTACCAGCAATGAAAA 57.343 36.364 0.00 0.00 38.47 2.29
87 88 5.208463 ACGGTTTTACCAGCAATGAAAAT 57.792 34.783 0.00 0.00 38.47 1.82
88 89 5.606505 ACGGTTTTACCAGCAATGAAAATT 58.393 33.333 0.00 0.00 38.47 1.82
89 90 5.465056 ACGGTTTTACCAGCAATGAAAATTG 59.535 36.000 0.00 0.00 38.47 2.32
90 91 5.107143 CGGTTTTACCAGCAATGAAAATTGG 60.107 40.000 1.01 0.00 38.47 3.16
91 92 5.762711 GGTTTTACCAGCAATGAAAATTGGT 59.237 36.000 0.00 0.00 44.00 3.67
97 98 3.806380 AGCAATGAAAATTGGTGTTGCA 58.194 36.364 16.28 0.00 43.08 4.08
98 99 3.810941 AGCAATGAAAATTGGTGTTGCAG 59.189 39.130 16.28 0.00 43.08 4.41
99 100 3.607542 GCAATGAAAATTGGTGTTGCAGC 60.608 43.478 11.64 0.00 41.01 5.25
100 101 3.756933 ATGAAAATTGGTGTTGCAGCT 57.243 38.095 1.17 0.00 32.61 4.24
101 102 2.823984 TGAAAATTGGTGTTGCAGCTG 58.176 42.857 10.11 10.11 32.61 4.24
102 103 2.137523 GAAAATTGGTGTTGCAGCTGG 58.862 47.619 17.12 0.00 32.61 4.85
103 104 1.122227 AAATTGGTGTTGCAGCTGGT 58.878 45.000 17.12 0.00 32.61 4.00
104 105 0.390124 AATTGGTGTTGCAGCTGGTG 59.610 50.000 17.12 1.76 32.61 4.17
105 106 0.756442 ATTGGTGTTGCAGCTGGTGT 60.756 50.000 17.12 0.00 32.61 4.16
106 107 1.665264 TTGGTGTTGCAGCTGGTGTG 61.665 55.000 17.12 0.00 32.61 3.82
107 108 1.823470 GGTGTTGCAGCTGGTGTGA 60.823 57.895 17.12 0.00 0.00 3.58
108 109 1.174712 GGTGTTGCAGCTGGTGTGAT 61.175 55.000 17.12 0.00 0.00 3.06
109 110 0.670162 GTGTTGCAGCTGGTGTGATT 59.330 50.000 17.12 0.00 0.00 2.57
110 111 1.879380 GTGTTGCAGCTGGTGTGATTA 59.121 47.619 17.12 0.00 0.00 1.75
111 112 2.293122 GTGTTGCAGCTGGTGTGATTAA 59.707 45.455 17.12 0.00 0.00 1.40
112 113 2.954989 TGTTGCAGCTGGTGTGATTAAA 59.045 40.909 17.12 0.00 0.00 1.52
113 114 3.382865 TGTTGCAGCTGGTGTGATTAAAA 59.617 39.130 17.12 0.00 0.00 1.52
114 115 4.039004 TGTTGCAGCTGGTGTGATTAAAAT 59.961 37.500 17.12 0.00 0.00 1.82
115 116 4.177165 TGCAGCTGGTGTGATTAAAATG 57.823 40.909 17.12 0.00 0.00 2.32
116 117 2.925563 GCAGCTGGTGTGATTAAAATGC 59.074 45.455 17.12 0.00 0.00 3.56
117 118 3.367703 GCAGCTGGTGTGATTAAAATGCT 60.368 43.478 17.12 0.00 0.00 3.79
118 119 4.142403 GCAGCTGGTGTGATTAAAATGCTA 60.142 41.667 17.12 0.00 0.00 3.49
119 120 5.335127 CAGCTGGTGTGATTAAAATGCTAC 58.665 41.667 5.57 0.00 0.00 3.58
120 121 5.009631 AGCTGGTGTGATTAAAATGCTACA 58.990 37.500 0.00 0.00 0.00 2.74
121 122 5.476599 AGCTGGTGTGATTAAAATGCTACAA 59.523 36.000 0.00 0.00 0.00 2.41
122 123 5.572896 GCTGGTGTGATTAAAATGCTACAAC 59.427 40.000 0.00 0.00 0.00 3.32
123 124 6.019779 TGGTGTGATTAAAATGCTACAACC 57.980 37.500 0.00 0.00 0.00 3.77
124 125 5.092781 GGTGTGATTAAAATGCTACAACCG 58.907 41.667 0.00 0.00 0.00 4.44
125 126 5.335348 GGTGTGATTAAAATGCTACAACCGT 60.335 40.000 0.00 0.00 0.00 4.83
126 127 5.793457 GTGTGATTAAAATGCTACAACCGTC 59.207 40.000 0.00 0.00 0.00 4.79
127 128 5.470437 TGTGATTAAAATGCTACAACCGTCA 59.530 36.000 0.00 0.00 0.00 4.35
128 129 6.017026 TGTGATTAAAATGCTACAACCGTCAA 60.017 34.615 0.00 0.00 0.00 3.18
129 130 7.027161 GTGATTAAAATGCTACAACCGTCAAT 58.973 34.615 0.00 0.00 0.00 2.57
130 131 7.008266 GTGATTAAAATGCTACAACCGTCAATG 59.992 37.037 0.00 0.00 0.00 2.82
131 132 2.919666 AATGCTACAACCGTCAATGC 57.080 45.000 0.00 0.00 0.00 3.56
132 133 1.094785 ATGCTACAACCGTCAATGCC 58.905 50.000 0.00 0.00 0.00 4.40
133 134 0.250510 TGCTACAACCGTCAATGCCA 60.251 50.000 0.00 0.00 0.00 4.92
134 135 0.447801 GCTACAACCGTCAATGCCAG 59.552 55.000 0.00 0.00 0.00 4.85
135 136 1.943968 GCTACAACCGTCAATGCCAGA 60.944 52.381 0.00 0.00 0.00 3.86
136 137 2.632377 CTACAACCGTCAATGCCAGAT 58.368 47.619 0.00 0.00 0.00 2.90
137 138 1.167851 ACAACCGTCAATGCCAGATG 58.832 50.000 0.00 0.00 0.00 2.90
138 139 1.167851 CAACCGTCAATGCCAGATGT 58.832 50.000 0.00 0.00 0.00 3.06
139 140 1.541147 CAACCGTCAATGCCAGATGTT 59.459 47.619 0.00 0.00 0.00 2.71
140 141 2.746904 CAACCGTCAATGCCAGATGTTA 59.253 45.455 0.00 0.00 0.00 2.41
141 142 2.356135 ACCGTCAATGCCAGATGTTAC 58.644 47.619 0.00 0.00 0.00 2.50
142 143 2.290008 ACCGTCAATGCCAGATGTTACA 60.290 45.455 0.00 0.00 0.00 2.41
143 144 2.746904 CCGTCAATGCCAGATGTTACAA 59.253 45.455 0.00 0.00 0.00 2.41
144 145 3.426159 CCGTCAATGCCAGATGTTACAAC 60.426 47.826 0.00 0.00 0.00 3.32
145 146 3.426159 CGTCAATGCCAGATGTTACAACC 60.426 47.826 0.00 0.00 0.00 3.77
146 147 2.746904 TCAATGCCAGATGTTACAACCG 59.253 45.455 0.00 0.00 0.00 4.44
147 148 1.750193 ATGCCAGATGTTACAACCGG 58.250 50.000 0.00 0.00 0.00 5.28
148 149 0.398696 TGCCAGATGTTACAACCGGT 59.601 50.000 0.00 0.00 0.00 5.28
149 150 0.802494 GCCAGATGTTACAACCGGTG 59.198 55.000 8.52 4.99 0.00 4.94
150 151 1.609580 GCCAGATGTTACAACCGGTGA 60.610 52.381 8.52 0.00 0.00 4.02
151 152 2.346803 CCAGATGTTACAACCGGTGAG 58.653 52.381 8.52 6.84 0.00 3.51
152 153 2.028476 CCAGATGTTACAACCGGTGAGA 60.028 50.000 8.52 0.00 0.00 3.27
153 154 2.993899 CAGATGTTACAACCGGTGAGAC 59.006 50.000 8.52 5.74 0.00 3.36
154 155 1.990563 GATGTTACAACCGGTGAGACG 59.009 52.381 8.52 0.00 0.00 4.18
155 156 1.031235 TGTTACAACCGGTGAGACGA 58.969 50.000 8.52 0.00 35.47 4.20
156 157 1.614903 TGTTACAACCGGTGAGACGAT 59.385 47.619 8.52 0.00 35.47 3.73
157 158 2.819019 TGTTACAACCGGTGAGACGATA 59.181 45.455 8.52 0.00 35.47 2.92
158 159 3.444742 TGTTACAACCGGTGAGACGATAT 59.555 43.478 8.52 0.00 35.47 1.63
159 160 2.579207 ACAACCGGTGAGACGATATG 57.421 50.000 8.52 0.74 35.47 1.78
160 161 1.209128 CAACCGGTGAGACGATATGC 58.791 55.000 8.52 0.00 35.47 3.14
161 162 1.112113 AACCGGTGAGACGATATGCT 58.888 50.000 8.52 0.00 35.47 3.79
162 163 1.977056 ACCGGTGAGACGATATGCTA 58.023 50.000 6.12 0.00 35.47 3.49
163 164 1.607628 ACCGGTGAGACGATATGCTAC 59.392 52.381 6.12 0.00 35.47 3.58
164 165 1.607148 CCGGTGAGACGATATGCTACA 59.393 52.381 0.00 0.00 35.47 2.74
165 166 2.034179 CCGGTGAGACGATATGCTACAA 59.966 50.000 0.00 0.00 35.47 2.41
166 167 3.305403 CCGGTGAGACGATATGCTACAAT 60.305 47.826 0.00 0.00 35.47 2.71
167 168 3.914966 CGGTGAGACGATATGCTACAATC 59.085 47.826 0.00 0.00 35.47 2.67
169 170 4.320275 GGTGAGACGATATGCTACAATCGA 60.320 45.833 11.27 0.00 46.08 3.59
170 171 5.394802 GTGAGACGATATGCTACAATCGAT 58.605 41.667 11.27 0.00 46.08 3.59
171 172 5.284897 GTGAGACGATATGCTACAATCGATG 59.715 44.000 11.27 0.00 46.08 3.84
172 173 5.181245 TGAGACGATATGCTACAATCGATGA 59.819 40.000 11.27 0.00 46.08 2.92
173 174 5.635866 AGACGATATGCTACAATCGATGAG 58.364 41.667 11.27 0.00 46.08 2.90
174 175 4.738124 ACGATATGCTACAATCGATGAGG 58.262 43.478 11.27 0.00 46.08 3.86
175 176 4.108336 CGATATGCTACAATCGATGAGGG 58.892 47.826 0.00 0.00 46.08 4.30
176 177 4.142381 CGATATGCTACAATCGATGAGGGA 60.142 45.833 0.00 0.00 46.08 4.20
177 178 2.890808 TGCTACAATCGATGAGGGAC 57.109 50.000 0.00 0.00 0.00 4.46
178 179 2.107366 TGCTACAATCGATGAGGGACA 58.893 47.619 0.00 0.00 0.00 4.02
179 180 2.499693 TGCTACAATCGATGAGGGACAA 59.500 45.455 0.00 0.00 0.00 3.18
180 181 2.866762 GCTACAATCGATGAGGGACAAC 59.133 50.000 0.00 0.00 0.00 3.32
181 182 3.678806 GCTACAATCGATGAGGGACAACA 60.679 47.826 0.00 0.00 0.00 3.33
182 183 3.634397 ACAATCGATGAGGGACAACAT 57.366 42.857 0.00 0.00 0.00 2.71
183 184 3.273434 ACAATCGATGAGGGACAACATG 58.727 45.455 0.00 0.00 0.00 3.21
184 185 1.959042 ATCGATGAGGGACAACATGC 58.041 50.000 0.00 0.00 0.00 4.06
185 186 0.904649 TCGATGAGGGACAACATGCT 59.095 50.000 0.00 0.00 0.00 3.79
186 187 2.107366 TCGATGAGGGACAACATGCTA 58.893 47.619 0.00 0.00 0.00 3.49
187 188 2.159099 TCGATGAGGGACAACATGCTAC 60.159 50.000 0.00 0.00 0.00 3.58
188 189 2.418609 CGATGAGGGACAACATGCTACA 60.419 50.000 0.00 0.00 0.00 2.74
189 190 3.609853 GATGAGGGACAACATGCTACAA 58.390 45.455 0.00 0.00 0.00 2.41
190 191 2.778299 TGAGGGACAACATGCTACAAC 58.222 47.619 0.00 0.00 0.00 3.32
191 192 2.084546 GAGGGACAACATGCTACAACC 58.915 52.381 0.00 0.00 0.00 3.77
192 193 1.423541 AGGGACAACATGCTACAACCA 59.576 47.619 0.00 0.00 0.00 3.67
193 194 2.158534 AGGGACAACATGCTACAACCAA 60.159 45.455 0.00 0.00 0.00 3.67
194 195 2.030274 GGGACAACATGCTACAACCAAC 60.030 50.000 0.00 0.00 0.00 3.77
195 196 2.621055 GGACAACATGCTACAACCAACA 59.379 45.455 0.00 0.00 0.00 3.33
196 197 3.067461 GGACAACATGCTACAACCAACAA 59.933 43.478 0.00 0.00 0.00 2.83
197 198 4.290155 GACAACATGCTACAACCAACAAG 58.710 43.478 0.00 0.00 0.00 3.16
198 199 3.951037 ACAACATGCTACAACCAACAAGA 59.049 39.130 0.00 0.00 0.00 3.02
199 200 4.202010 ACAACATGCTACAACCAACAAGAC 60.202 41.667 0.00 0.00 0.00 3.01
200 201 2.548057 ACATGCTACAACCAACAAGACG 59.452 45.455 0.00 0.00 0.00 4.18
201 202 2.605837 TGCTACAACCAACAAGACGA 57.394 45.000 0.00 0.00 0.00 4.20
202 203 2.907634 TGCTACAACCAACAAGACGAA 58.092 42.857 0.00 0.00 0.00 3.85
203 204 3.472652 TGCTACAACCAACAAGACGAAT 58.527 40.909 0.00 0.00 0.00 3.34
204 205 3.249799 TGCTACAACCAACAAGACGAATG 59.750 43.478 0.00 0.00 0.00 2.67
205 206 2.774439 ACAACCAACAAGACGAATGC 57.226 45.000 0.00 0.00 0.00 3.56
206 207 2.297701 ACAACCAACAAGACGAATGCT 58.702 42.857 0.00 0.00 0.00 3.79
207 208 2.033299 ACAACCAACAAGACGAATGCTG 59.967 45.455 0.00 0.00 0.00 4.41
208 209 0.593128 ACCAACAAGACGAATGCTGC 59.407 50.000 0.00 0.00 0.00 5.25
209 210 0.592637 CCAACAAGACGAATGCTGCA 59.407 50.000 4.13 4.13 0.00 4.41
210 211 1.001487 CCAACAAGACGAATGCTGCAA 60.001 47.619 6.36 0.00 0.00 4.08
211 212 2.046313 CAACAAGACGAATGCTGCAAC 58.954 47.619 6.36 3.14 0.00 4.17
212 213 0.593128 ACAAGACGAATGCTGCAACC 59.407 50.000 6.36 0.01 0.00 3.77
213 214 0.453282 CAAGACGAATGCTGCAACCG 60.453 55.000 20.17 20.17 0.00 4.44
214 215 1.577328 AAGACGAATGCTGCAACCGG 61.577 55.000 23.67 0.00 0.00 5.28
215 216 2.281484 ACGAATGCTGCAACCGGT 60.281 55.556 23.67 0.00 0.00 5.28
216 217 1.004320 ACGAATGCTGCAACCGGTA 60.004 52.632 23.67 0.00 0.00 4.02
217 218 1.019278 ACGAATGCTGCAACCGGTAG 61.019 55.000 23.67 2.11 0.00 3.18
218 219 0.739462 CGAATGCTGCAACCGGTAGA 60.739 55.000 8.00 0.00 0.00 2.59
219 220 1.448985 GAATGCTGCAACCGGTAGAA 58.551 50.000 8.00 0.00 0.00 2.10
220 221 1.810151 GAATGCTGCAACCGGTAGAAA 59.190 47.619 8.00 0.00 0.00 2.52
221 222 1.904287 ATGCTGCAACCGGTAGAAAA 58.096 45.000 8.00 0.00 0.00 2.29
222 223 1.681538 TGCTGCAACCGGTAGAAAAA 58.318 45.000 8.00 0.00 0.00 1.94
241 242 4.999751 AAAAAGTTGCAAGCGTTGAAAA 57.000 31.818 0.00 0.00 27.80 2.29
242 243 4.999751 AAAAGTTGCAAGCGTTGAAAAA 57.000 31.818 0.00 0.00 27.80 1.94
262 263 2.995466 AAATGTTGCATGGTCGACTG 57.005 45.000 16.46 8.03 0.00 3.51
263 264 2.183478 AATGTTGCATGGTCGACTGA 57.817 45.000 16.46 2.65 0.00 3.41
264 265 1.730501 ATGTTGCATGGTCGACTGAG 58.269 50.000 16.46 6.42 0.00 3.35
265 266 0.678950 TGTTGCATGGTCGACTGAGA 59.321 50.000 16.46 0.00 0.00 3.27
266 267 1.071605 GTTGCATGGTCGACTGAGAC 58.928 55.000 16.46 5.53 40.25 3.36
267 268 0.969149 TTGCATGGTCGACTGAGACT 59.031 50.000 16.46 0.00 40.76 3.24
268 269 0.969149 TGCATGGTCGACTGAGACTT 59.031 50.000 16.46 0.00 40.76 3.01
269 270 1.337167 TGCATGGTCGACTGAGACTTG 60.337 52.381 16.46 7.76 40.76 3.16
270 271 2.001812 CATGGTCGACTGAGACTTGG 57.998 55.000 16.46 0.00 40.76 3.61
271 272 1.273606 CATGGTCGACTGAGACTTGGT 59.726 52.381 16.46 0.00 40.76 3.67
272 273 1.410004 TGGTCGACTGAGACTTGGTT 58.590 50.000 16.46 0.00 40.76 3.67
273 274 2.589720 TGGTCGACTGAGACTTGGTTA 58.410 47.619 16.46 0.00 40.76 2.85
274 275 2.960384 TGGTCGACTGAGACTTGGTTAA 59.040 45.455 16.46 0.00 40.76 2.01
275 276 3.385433 TGGTCGACTGAGACTTGGTTAAA 59.615 43.478 16.46 0.00 40.76 1.52
276 277 3.739810 GGTCGACTGAGACTTGGTTAAAC 59.260 47.826 16.46 0.00 40.76 2.01
277 278 4.501058 GGTCGACTGAGACTTGGTTAAACT 60.501 45.833 16.46 0.00 40.76 2.66
278 279 4.680567 GTCGACTGAGACTTGGTTAAACTC 59.319 45.833 8.70 0.00 38.09 3.01
279 280 4.340097 TCGACTGAGACTTGGTTAAACTCA 59.660 41.667 0.00 0.00 36.42 3.41
283 284 4.617959 TGAGACTTGGTTAAACTCAGTCG 58.382 43.478 14.24 0.00 33.57 4.18
284 285 4.340097 TGAGACTTGGTTAAACTCAGTCGA 59.660 41.667 14.24 6.15 33.57 4.20
285 286 4.618965 AGACTTGGTTAAACTCAGTCGAC 58.381 43.478 7.70 7.70 0.00 4.20
286 287 4.341520 AGACTTGGTTAAACTCAGTCGACT 59.658 41.667 13.58 13.58 0.00 4.18
287 288 4.369182 ACTTGGTTAAACTCAGTCGACTG 58.631 43.478 34.76 34.76 45.08 3.51
300 301 4.398247 CAGTCGACTGATTTTTAGCAAGC 58.602 43.478 36.73 0.00 46.59 4.01
301 302 3.437049 AGTCGACTGATTTTTAGCAAGCC 59.563 43.478 19.30 0.00 0.00 4.35
302 303 2.747446 TCGACTGATTTTTAGCAAGCCC 59.253 45.455 0.00 0.00 0.00 5.19
303 304 2.476185 CGACTGATTTTTAGCAAGCCCG 60.476 50.000 0.00 0.00 0.00 6.13
304 305 2.488153 GACTGATTTTTAGCAAGCCCGT 59.512 45.455 0.00 0.00 0.00 5.28
305 306 2.890945 ACTGATTTTTAGCAAGCCCGTT 59.109 40.909 0.00 0.00 0.00 4.44
306 307 4.076394 ACTGATTTTTAGCAAGCCCGTTA 58.924 39.130 0.00 0.00 0.00 3.18
307 308 4.521256 ACTGATTTTTAGCAAGCCCGTTAA 59.479 37.500 0.00 0.00 0.00 2.01
308 309 5.185056 ACTGATTTTTAGCAAGCCCGTTAAT 59.815 36.000 0.00 0.00 0.00 1.40
309 310 6.376018 ACTGATTTTTAGCAAGCCCGTTAATA 59.624 34.615 0.00 0.00 0.00 0.98
310 311 7.094118 ACTGATTTTTAGCAAGCCCGTTAATAA 60.094 33.333 0.00 0.00 0.00 1.40
311 312 7.603651 TGATTTTTAGCAAGCCCGTTAATAAA 58.396 30.769 0.00 0.00 0.00 1.40
312 313 8.088981 TGATTTTTAGCAAGCCCGTTAATAAAA 58.911 29.630 0.00 0.00 0.00 1.52
313 314 9.093970 GATTTTTAGCAAGCCCGTTAATAAAAT 57.906 29.630 0.00 0.00 0.00 1.82
314 315 7.820044 TTTTAGCAAGCCCGTTAATAAAATG 57.180 32.000 0.00 0.00 0.00 2.32
315 316 4.385358 AGCAAGCCCGTTAATAAAATGG 57.615 40.909 0.00 0.00 0.00 3.16
316 317 3.767131 AGCAAGCCCGTTAATAAAATGGT 59.233 39.130 0.00 0.00 0.00 3.55
317 318 4.221924 AGCAAGCCCGTTAATAAAATGGTT 59.778 37.500 0.00 0.00 0.00 3.67
318 319 4.328712 GCAAGCCCGTTAATAAAATGGTTG 59.671 41.667 0.00 0.00 0.00 3.77
319 320 5.474825 CAAGCCCGTTAATAAAATGGTTGT 58.525 37.500 0.00 0.00 0.00 3.32
320 321 6.622549 CAAGCCCGTTAATAAAATGGTTGTA 58.377 36.000 0.00 0.00 0.00 2.41
321 322 7.262048 CAAGCCCGTTAATAAAATGGTTGTAT 58.738 34.615 0.00 0.00 0.00 2.29
322 323 6.801575 AGCCCGTTAATAAAATGGTTGTATG 58.198 36.000 0.00 0.00 0.00 2.39
323 324 5.460748 GCCCGTTAATAAAATGGTTGTATGC 59.539 40.000 0.00 0.00 0.00 3.14
324 325 6.565234 CCCGTTAATAAAATGGTTGTATGCA 58.435 36.000 0.00 0.00 0.00 3.96
325 326 7.206687 CCCGTTAATAAAATGGTTGTATGCAT 58.793 34.615 3.79 3.79 0.00 3.96
326 327 7.381139 CCCGTTAATAAAATGGTTGTATGCATC 59.619 37.037 0.19 0.00 0.00 3.91
327 328 7.112844 CCGTTAATAAAATGGTTGTATGCATCG 59.887 37.037 0.19 0.00 0.00 3.84
328 329 7.642194 CGTTAATAAAATGGTTGTATGCATCGT 59.358 33.333 0.19 0.00 0.00 3.73
329 330 8.953990 GTTAATAAAATGGTTGTATGCATCGTC 58.046 33.333 0.19 0.00 0.00 4.20
330 331 4.370364 AAAATGGTTGTATGCATCGTCC 57.630 40.909 0.19 2.76 0.00 4.79
331 332 2.708216 ATGGTTGTATGCATCGTCCA 57.292 45.000 0.19 8.81 0.00 4.02
332 333 2.022764 TGGTTGTATGCATCGTCCAG 57.977 50.000 0.19 0.00 0.00 3.86
333 334 1.552792 TGGTTGTATGCATCGTCCAGA 59.447 47.619 0.19 0.00 0.00 3.86
334 335 2.170397 TGGTTGTATGCATCGTCCAGAT 59.830 45.455 0.19 0.00 41.01 2.90
342 343 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
343 344 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
344 345 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
345 346 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
346 347 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
347 348 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
359 360 3.001406 CCGGGGGTCGTCCTCTTT 61.001 66.667 0.00 0.00 37.11 2.52
360 361 2.590114 CCGGGGGTCGTCCTCTTTT 61.590 63.158 0.00 0.00 37.11 2.27
361 362 1.373812 CGGGGGTCGTCCTCTTTTT 59.626 57.895 0.00 0.00 33.94 1.94
362 363 0.672711 CGGGGGTCGTCCTCTTTTTC 60.673 60.000 0.00 0.00 33.94 2.29
363 364 0.691332 GGGGGTCGTCCTCTTTTTCT 59.309 55.000 0.00 0.00 33.94 2.52
364 365 1.904537 GGGGGTCGTCCTCTTTTTCTA 59.095 52.381 0.00 0.00 33.94 2.10
365 366 2.303890 GGGGGTCGTCCTCTTTTTCTAA 59.696 50.000 0.00 0.00 33.94 2.10
366 367 3.244665 GGGGGTCGTCCTCTTTTTCTAAA 60.245 47.826 0.00 0.00 33.94 1.85
367 368 4.392047 GGGGTCGTCCTCTTTTTCTAAAA 58.608 43.478 0.00 0.00 35.33 1.52
368 369 4.823442 GGGGTCGTCCTCTTTTTCTAAAAA 59.177 41.667 0.00 1.05 34.81 1.94
450 451 3.713650 GGTGACCAGCTAGCAGGA 58.286 61.111 30.85 8.32 0.00 3.86
455 456 0.898320 GACCAGCTAGCAGGAGTTCA 59.102 55.000 30.85 0.00 0.00 3.18
468 471 1.264288 GGAGTTCAAAGTCAACAGCCG 59.736 52.381 0.38 0.00 0.00 5.52
471 474 2.354821 AGTTCAAAGTCAACAGCCGTTC 59.645 45.455 0.00 0.00 31.13 3.95
474 477 1.002468 CAAAGTCAACAGCCGTTCCAG 60.002 52.381 0.00 0.00 31.13 3.86
498 501 2.358582 TGTGTTCATTGACAGCCTGTTG 59.641 45.455 0.00 0.00 0.00 3.33
504 507 3.070878 TCATTGACAGCCTGTTGTAGTGA 59.929 43.478 0.00 0.00 0.00 3.41
507 510 1.000607 GACAGCCTGTTGTAGTGACGA 60.001 52.381 0.00 0.00 0.00 4.20
508 511 1.000163 ACAGCCTGTTGTAGTGACGAG 60.000 52.381 0.00 0.00 0.00 4.18
514 517 3.193691 CCTGTTGTAGTGACGAGAAGGAT 59.806 47.826 0.00 0.00 30.06 3.24
572 575 2.027469 GGTACTGGAAACCCTACCACTG 60.027 54.545 0.00 0.00 30.45 3.66
586 694 1.493022 ACCACTGGTTGCCTACAAGAA 59.507 47.619 0.00 0.00 36.16 2.52
615 724 9.988350 CAACAACGAAAAATATAGCTTGACTAT 57.012 29.630 0.00 0.00 44.12 2.12
650 759 5.107607 GCAATGACAAAATGCTCAGTTGAAG 60.108 40.000 4.51 0.00 37.12 3.02
716 825 6.312918 TCTCTGAAACTTATTTATGTGCCGAC 59.687 38.462 0.00 0.00 0.00 4.79
747 856 6.378848 AGTCCTTGGCGGCTTTAATTATTTTA 59.621 34.615 11.43 0.00 0.00 1.52
1020 1129 6.485984 CAGACATGCCTAGCAAGAAGATTATT 59.514 38.462 0.00 0.00 43.62 1.40
1285 1394 0.321564 TGTGTTTGCCATCCTCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
1629 1738 5.244851 TGATAGAGAGGCCATACAGATCAAC 59.755 44.000 5.01 0.00 0.00 3.18
1844 1953 2.101965 CTCTGAGCTGCCTCGTCG 59.898 66.667 0.00 0.00 41.13 5.12
1946 2055 3.197766 ACCATCTTTCTGCTCATACGGAA 59.802 43.478 0.00 0.00 33.10 4.30
2102 2211 1.741145 GGTATACAAAGGGGTGTTGCG 59.259 52.381 5.01 0.00 32.75 4.85
2139 2248 0.318699 TCGCTGTGAAGAAGGTGTCG 60.319 55.000 0.00 0.00 0.00 4.35
2463 2572 2.632987 TCGATACCGAGATCAGTGGA 57.367 50.000 5.06 0.00 40.30 4.02
2668 2782 4.562347 CCATCATGGAAGATACGGAGGAAG 60.562 50.000 0.00 0.00 40.96 3.46
2763 2877 3.812053 AGCTTCAAGGCGAATATGATGTC 59.188 43.478 0.00 0.00 37.29 3.06
3189 3303 6.279513 TGTTCAAGGCCTTGTAATAAATGG 57.720 37.500 37.97 14.67 41.16 3.16
3652 3805 7.241042 AGGTACTCTACTGCAATAAAACTCA 57.759 36.000 0.00 0.00 0.00 3.41
3704 3857 2.061220 CTTCCCAGTGCAGACCAGA 58.939 57.895 0.00 0.00 0.00 3.86
3833 3986 0.663153 GTCACCTGTGGACTTTGCAC 59.337 55.000 0.00 0.00 39.30 4.57
3916 4069 2.489938 TGGCCACTCTGGAACATTAC 57.510 50.000 0.00 0.00 40.96 1.89
3924 4077 4.988540 CACTCTGGAACATTACGAACAAGA 59.011 41.667 0.00 0.00 38.20 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.665052 GCTTGCAGCAAAAGAACTATGC 59.335 45.455 9.65 1.81 41.89 3.14
3 4 2.912967 CGCTTGCAGCAAAAGAACTATG 59.087 45.455 9.65 0.00 42.58 2.23
4 5 2.095059 CCGCTTGCAGCAAAAGAACTAT 60.095 45.455 9.65 0.00 42.58 2.12
5 6 1.266718 CCGCTTGCAGCAAAAGAACTA 59.733 47.619 9.65 0.00 42.58 2.24
6 7 0.031178 CCGCTTGCAGCAAAAGAACT 59.969 50.000 9.65 0.00 42.58 3.01
7 8 1.551503 GCCGCTTGCAGCAAAAGAAC 61.552 55.000 9.65 0.00 42.58 3.01
8 9 1.300080 GCCGCTTGCAGCAAAAGAA 60.300 52.632 9.65 0.00 42.58 2.52
9 10 2.336088 GCCGCTTGCAGCAAAAGA 59.664 55.556 9.65 0.00 42.58 2.52
19 20 2.202932 ATCTAGCCGTGCCGCTTG 60.203 61.111 0.00 0.00 40.39 4.01
20 21 2.202932 CATCTAGCCGTGCCGCTT 60.203 61.111 0.00 0.00 40.39 4.68
21 22 4.899239 GCATCTAGCCGTGCCGCT 62.899 66.667 3.96 0.00 43.09 5.52
30 31 3.371102 TCATCGGTTGTAGCATCTAGC 57.629 47.619 0.00 0.00 46.19 3.42
31 32 5.126396 TCATCATCGGTTGTAGCATCTAG 57.874 43.478 0.00 0.00 0.00 2.43
32 33 5.529581 TTCATCATCGGTTGTAGCATCTA 57.470 39.130 0.00 0.00 0.00 1.98
33 34 4.406648 TTCATCATCGGTTGTAGCATCT 57.593 40.909 0.00 0.00 0.00 2.90
34 35 5.484173 TTTTCATCATCGGTTGTAGCATC 57.516 39.130 0.00 0.00 0.00 3.91
35 36 5.895636 TTTTTCATCATCGGTTGTAGCAT 57.104 34.783 0.00 0.00 0.00 3.79
36 37 5.182950 ACATTTTTCATCATCGGTTGTAGCA 59.817 36.000 0.00 0.00 0.00 3.49
37 38 5.640732 ACATTTTTCATCATCGGTTGTAGC 58.359 37.500 0.00 0.00 0.00 3.58
38 39 6.033831 GCAACATTTTTCATCATCGGTTGTAG 59.966 38.462 0.00 0.00 37.34 2.74
39 40 5.861251 GCAACATTTTTCATCATCGGTTGTA 59.139 36.000 0.00 0.00 37.34 2.41
40 41 4.685628 GCAACATTTTTCATCATCGGTTGT 59.314 37.500 0.00 0.00 37.34 3.32
41 42 4.685165 TGCAACATTTTTCATCATCGGTTG 59.315 37.500 0.00 0.00 37.88 3.77
42 43 4.880759 TGCAACATTTTTCATCATCGGTT 58.119 34.783 0.00 0.00 0.00 4.44
43 44 4.517952 TGCAACATTTTTCATCATCGGT 57.482 36.364 0.00 0.00 0.00 4.69
44 45 4.201513 CGTTGCAACATTTTTCATCATCGG 60.202 41.667 28.01 3.19 0.00 4.18
45 46 4.201513 CCGTTGCAACATTTTTCATCATCG 60.202 41.667 28.01 9.57 0.00 3.84
46 47 4.685628 ACCGTTGCAACATTTTTCATCATC 59.314 37.500 28.01 0.00 0.00 2.92
47 48 4.630111 ACCGTTGCAACATTTTTCATCAT 58.370 34.783 28.01 0.00 0.00 2.45
48 49 4.052159 ACCGTTGCAACATTTTTCATCA 57.948 36.364 28.01 0.00 0.00 3.07
49 50 5.402464 AAACCGTTGCAACATTTTTCATC 57.598 34.783 28.01 0.00 0.00 2.92
50 51 5.809719 AAAACCGTTGCAACATTTTTCAT 57.190 30.435 28.01 10.49 0.00 2.57
51 52 5.063564 GGTAAAACCGTTGCAACATTTTTCA 59.936 36.000 30.89 19.43 32.43 2.69
52 53 5.063564 TGGTAAAACCGTTGCAACATTTTTC 59.936 36.000 30.89 26.97 42.58 2.29
53 54 4.935808 TGGTAAAACCGTTGCAACATTTTT 59.064 33.333 30.89 29.33 42.58 1.94
54 55 4.504858 TGGTAAAACCGTTGCAACATTTT 58.495 34.783 29.61 29.61 42.58 1.82
55 56 4.116238 CTGGTAAAACCGTTGCAACATTT 58.884 39.130 28.01 24.06 42.58 2.32
56 57 3.712187 CTGGTAAAACCGTTGCAACATT 58.288 40.909 28.01 18.53 42.58 2.71
57 58 2.544903 GCTGGTAAAACCGTTGCAACAT 60.545 45.455 28.01 13.58 42.58 2.71
58 59 1.202313 GCTGGTAAAACCGTTGCAACA 60.202 47.619 28.01 5.65 42.58 3.33
59 60 1.202313 TGCTGGTAAAACCGTTGCAAC 60.202 47.619 19.89 19.89 42.58 4.17
60 61 1.103803 TGCTGGTAAAACCGTTGCAA 58.896 45.000 0.00 0.00 42.58 4.08
61 62 1.103803 TTGCTGGTAAAACCGTTGCA 58.896 45.000 7.00 7.00 42.58 4.08
62 63 2.058057 CATTGCTGGTAAAACCGTTGC 58.942 47.619 0.00 0.00 42.58 4.17
63 64 3.634568 TCATTGCTGGTAAAACCGTTG 57.365 42.857 0.00 0.00 42.58 4.10
64 65 4.657436 TTTCATTGCTGGTAAAACCGTT 57.343 36.364 0.00 0.00 42.58 4.44
65 66 4.657436 TTTTCATTGCTGGTAAAACCGT 57.343 36.364 0.00 0.00 42.58 4.83
66 67 5.107143 CCAATTTTCATTGCTGGTAAAACCG 60.107 40.000 0.00 0.00 38.90 4.44
67 68 5.762711 ACCAATTTTCATTGCTGGTAAAACC 59.237 36.000 0.00 0.00 38.62 3.27
68 69 6.259829 ACACCAATTTTCATTGCTGGTAAAAC 59.740 34.615 0.00 0.00 38.34 2.43
69 70 6.352516 ACACCAATTTTCATTGCTGGTAAAA 58.647 32.000 0.00 0.00 38.34 1.52
70 71 5.923204 ACACCAATTTTCATTGCTGGTAAA 58.077 33.333 0.00 0.00 38.34 2.01
71 72 5.543507 ACACCAATTTTCATTGCTGGTAA 57.456 34.783 0.00 0.00 38.34 2.85
72 73 5.295950 CAACACCAATTTTCATTGCTGGTA 58.704 37.500 0.00 0.00 38.34 3.25
73 74 4.128643 CAACACCAATTTTCATTGCTGGT 58.871 39.130 0.00 0.00 41.08 4.00
74 75 3.058777 GCAACACCAATTTTCATTGCTGG 60.059 43.478 0.00 0.00 38.88 4.85
75 76 3.560481 TGCAACACCAATTTTCATTGCTG 59.440 39.130 12.79 0.00 42.25 4.41
76 77 3.806380 TGCAACACCAATTTTCATTGCT 58.194 36.364 12.79 0.00 42.25 3.91
77 78 3.607542 GCTGCAACACCAATTTTCATTGC 60.608 43.478 0.00 0.00 42.13 3.56
78 79 3.810941 AGCTGCAACACCAATTTTCATTG 59.189 39.130 1.02 0.00 39.79 2.82
79 80 3.810941 CAGCTGCAACACCAATTTTCATT 59.189 39.130 0.00 0.00 0.00 2.57
80 81 3.395639 CAGCTGCAACACCAATTTTCAT 58.604 40.909 0.00 0.00 0.00 2.57
81 82 2.483363 CCAGCTGCAACACCAATTTTCA 60.483 45.455 8.66 0.00 0.00 2.69
82 83 2.137523 CCAGCTGCAACACCAATTTTC 58.862 47.619 8.66 0.00 0.00 2.29
83 84 1.485895 ACCAGCTGCAACACCAATTTT 59.514 42.857 8.66 0.00 0.00 1.82
84 85 1.122227 ACCAGCTGCAACACCAATTT 58.878 45.000 8.66 0.00 0.00 1.82
85 86 0.390124 CACCAGCTGCAACACCAATT 59.610 50.000 8.66 0.00 0.00 2.32
86 87 0.756442 ACACCAGCTGCAACACCAAT 60.756 50.000 8.66 0.00 0.00 3.16
87 88 1.379710 ACACCAGCTGCAACACCAA 60.380 52.632 8.66 0.00 0.00 3.67
88 89 2.120282 CACACCAGCTGCAACACCA 61.120 57.895 8.66 0.00 0.00 4.17
89 90 1.174712 ATCACACCAGCTGCAACACC 61.175 55.000 8.66 0.00 0.00 4.16
90 91 0.670162 AATCACACCAGCTGCAACAC 59.330 50.000 8.66 0.00 0.00 3.32
91 92 2.268762 TAATCACACCAGCTGCAACA 57.731 45.000 8.66 0.00 0.00 3.33
92 93 3.641437 TTTAATCACACCAGCTGCAAC 57.359 42.857 8.66 0.00 0.00 4.17
93 94 4.558178 CATTTTAATCACACCAGCTGCAA 58.442 39.130 8.66 0.00 0.00 4.08
94 95 3.614630 GCATTTTAATCACACCAGCTGCA 60.615 43.478 8.66 0.00 0.00 4.41
95 96 2.925563 GCATTTTAATCACACCAGCTGC 59.074 45.455 8.66 0.00 0.00 5.25
96 97 4.445452 AGCATTTTAATCACACCAGCTG 57.555 40.909 6.78 6.78 0.00 4.24
97 98 5.009631 TGTAGCATTTTAATCACACCAGCT 58.990 37.500 0.00 0.00 0.00 4.24
98 99 5.309323 TGTAGCATTTTAATCACACCAGC 57.691 39.130 0.00 0.00 0.00 4.85
99 100 6.092748 GGTTGTAGCATTTTAATCACACCAG 58.907 40.000 0.00 0.00 0.00 4.00
100 101 5.335269 CGGTTGTAGCATTTTAATCACACCA 60.335 40.000 0.00 0.00 0.00 4.17
101 102 5.092781 CGGTTGTAGCATTTTAATCACACC 58.907 41.667 0.00 0.00 0.00 4.16
102 103 5.695818 ACGGTTGTAGCATTTTAATCACAC 58.304 37.500 0.00 0.00 0.00 3.82
103 104 5.470437 TGACGGTTGTAGCATTTTAATCACA 59.530 36.000 0.00 0.00 0.00 3.58
104 105 5.933790 TGACGGTTGTAGCATTTTAATCAC 58.066 37.500 0.00 0.00 0.00 3.06
105 106 6.561737 TTGACGGTTGTAGCATTTTAATCA 57.438 33.333 0.00 0.00 0.00 2.57
106 107 6.020678 GCATTGACGGTTGTAGCATTTTAATC 60.021 38.462 0.00 0.00 0.00 1.75
107 108 5.804979 GCATTGACGGTTGTAGCATTTTAAT 59.195 36.000 0.00 0.00 0.00 1.40
108 109 5.157781 GCATTGACGGTTGTAGCATTTTAA 58.842 37.500 0.00 0.00 0.00 1.52
109 110 4.380023 GGCATTGACGGTTGTAGCATTTTA 60.380 41.667 0.00 0.00 0.00 1.52
110 111 3.574614 GCATTGACGGTTGTAGCATTTT 58.425 40.909 0.00 0.00 0.00 1.82
111 112 2.094752 GGCATTGACGGTTGTAGCATTT 60.095 45.455 0.00 0.00 0.00 2.32
112 113 1.472480 GGCATTGACGGTTGTAGCATT 59.528 47.619 0.00 0.00 0.00 3.56
113 114 1.094785 GGCATTGACGGTTGTAGCAT 58.905 50.000 0.00 0.00 0.00 3.79
114 115 0.250510 TGGCATTGACGGTTGTAGCA 60.251 50.000 0.00 0.00 0.00 3.49
115 116 0.447801 CTGGCATTGACGGTTGTAGC 59.552 55.000 0.00 0.00 0.00 3.58
116 117 2.093306 TCTGGCATTGACGGTTGTAG 57.907 50.000 0.00 0.00 0.00 2.74
117 118 2.290008 ACATCTGGCATTGACGGTTGTA 60.290 45.455 12.44 0.00 29.15 2.41
118 119 1.167851 CATCTGGCATTGACGGTTGT 58.832 50.000 0.00 0.00 0.00 3.32
119 120 1.167851 ACATCTGGCATTGACGGTTG 58.832 50.000 7.70 7.70 0.00 3.77
120 121 1.909700 AACATCTGGCATTGACGGTT 58.090 45.000 0.00 0.00 0.00 4.44
121 122 2.290008 TGTAACATCTGGCATTGACGGT 60.290 45.455 0.00 0.00 0.00 4.83
122 123 2.355197 TGTAACATCTGGCATTGACGG 58.645 47.619 4.76 0.00 0.00 4.79
123 124 3.426159 GGTTGTAACATCTGGCATTGACG 60.426 47.826 4.76 0.00 0.00 4.35
124 125 3.426159 CGGTTGTAACATCTGGCATTGAC 60.426 47.826 4.76 0.00 0.00 3.18
125 126 2.746904 CGGTTGTAACATCTGGCATTGA 59.253 45.455 4.76 0.00 0.00 2.57
126 127 2.159393 CCGGTTGTAACATCTGGCATTG 60.159 50.000 0.00 0.00 0.00 2.82
127 128 2.091541 CCGGTTGTAACATCTGGCATT 58.908 47.619 0.00 0.00 0.00 3.56
128 129 1.004277 ACCGGTTGTAACATCTGGCAT 59.996 47.619 0.00 0.00 34.04 4.40
129 130 0.398696 ACCGGTTGTAACATCTGGCA 59.601 50.000 0.00 0.00 34.04 4.92
130 131 0.802494 CACCGGTTGTAACATCTGGC 59.198 55.000 2.97 0.00 34.04 4.85
131 132 2.028476 TCTCACCGGTTGTAACATCTGG 60.028 50.000 2.97 0.00 36.12 3.86
132 133 2.993899 GTCTCACCGGTTGTAACATCTG 59.006 50.000 2.97 0.00 0.00 2.90
133 134 2.352421 CGTCTCACCGGTTGTAACATCT 60.352 50.000 2.97 0.00 0.00 2.90
134 135 1.990563 CGTCTCACCGGTTGTAACATC 59.009 52.381 2.97 0.00 0.00 3.06
135 136 1.614903 TCGTCTCACCGGTTGTAACAT 59.385 47.619 2.97 0.00 0.00 2.71
136 137 1.031235 TCGTCTCACCGGTTGTAACA 58.969 50.000 2.97 0.00 0.00 2.41
137 138 2.358939 ATCGTCTCACCGGTTGTAAC 57.641 50.000 2.97 0.00 0.00 2.50
138 139 3.735820 GCATATCGTCTCACCGGTTGTAA 60.736 47.826 2.97 0.00 0.00 2.41
139 140 2.223641 GCATATCGTCTCACCGGTTGTA 60.224 50.000 2.97 0.00 0.00 2.41
140 141 1.470979 GCATATCGTCTCACCGGTTGT 60.471 52.381 2.97 0.00 0.00 3.32
141 142 1.202417 AGCATATCGTCTCACCGGTTG 60.202 52.381 2.97 0.00 0.00 3.77
142 143 1.112113 AGCATATCGTCTCACCGGTT 58.888 50.000 2.97 0.00 0.00 4.44
143 144 1.607628 GTAGCATATCGTCTCACCGGT 59.392 52.381 0.00 0.00 0.00 5.28
144 145 1.607148 TGTAGCATATCGTCTCACCGG 59.393 52.381 0.00 0.00 0.00 5.28
145 146 3.349488 TTGTAGCATATCGTCTCACCG 57.651 47.619 0.00 0.00 0.00 4.94
146 147 3.914966 CGATTGTAGCATATCGTCTCACC 59.085 47.826 0.00 0.00 38.95 4.02
147 148 4.784329 TCGATTGTAGCATATCGTCTCAC 58.216 43.478 0.00 0.00 43.03 3.51
148 149 5.181245 TCATCGATTGTAGCATATCGTCTCA 59.819 40.000 0.00 0.00 43.03 3.27
149 150 5.631992 TCATCGATTGTAGCATATCGTCTC 58.368 41.667 0.00 0.00 43.03 3.36
150 151 5.392487 CCTCATCGATTGTAGCATATCGTCT 60.392 44.000 0.00 0.00 43.03 4.18
151 152 4.795795 CCTCATCGATTGTAGCATATCGTC 59.204 45.833 0.00 0.00 43.03 4.20
152 153 4.380973 CCCTCATCGATTGTAGCATATCGT 60.381 45.833 0.00 0.00 43.03 3.73
153 154 4.108336 CCCTCATCGATTGTAGCATATCG 58.892 47.826 0.00 0.00 43.67 2.92
154 155 5.105752 GTCCCTCATCGATTGTAGCATATC 58.894 45.833 0.00 0.00 0.00 1.63
155 156 4.528206 TGTCCCTCATCGATTGTAGCATAT 59.472 41.667 0.00 0.00 0.00 1.78
156 157 3.895041 TGTCCCTCATCGATTGTAGCATA 59.105 43.478 0.00 0.00 0.00 3.14
157 158 2.700371 TGTCCCTCATCGATTGTAGCAT 59.300 45.455 0.00 0.00 0.00 3.79
158 159 2.107366 TGTCCCTCATCGATTGTAGCA 58.893 47.619 0.00 0.00 0.00 3.49
159 160 2.866762 GTTGTCCCTCATCGATTGTAGC 59.133 50.000 0.00 0.00 0.00 3.58
160 161 4.123497 TGTTGTCCCTCATCGATTGTAG 57.877 45.455 0.00 0.00 0.00 2.74
161 162 4.441792 CATGTTGTCCCTCATCGATTGTA 58.558 43.478 0.00 0.00 0.00 2.41
162 163 3.273434 CATGTTGTCCCTCATCGATTGT 58.727 45.455 0.00 0.00 0.00 2.71
163 164 2.032550 GCATGTTGTCCCTCATCGATTG 59.967 50.000 0.00 0.00 0.00 2.67
164 165 2.092753 AGCATGTTGTCCCTCATCGATT 60.093 45.455 0.00 0.00 0.00 3.34
165 166 1.487976 AGCATGTTGTCCCTCATCGAT 59.512 47.619 0.00 0.00 0.00 3.59
166 167 0.904649 AGCATGTTGTCCCTCATCGA 59.095 50.000 0.00 0.00 0.00 3.59
167 168 2.205074 GTAGCATGTTGTCCCTCATCG 58.795 52.381 0.00 0.00 0.00 3.84
168 169 3.266510 TGTAGCATGTTGTCCCTCATC 57.733 47.619 0.00 0.00 0.00 2.92
169 170 3.347216 GTTGTAGCATGTTGTCCCTCAT 58.653 45.455 0.00 0.00 0.00 2.90
170 171 2.552155 GGTTGTAGCATGTTGTCCCTCA 60.552 50.000 0.00 0.00 0.00 3.86
171 172 2.084546 GGTTGTAGCATGTTGTCCCTC 58.915 52.381 0.00 0.00 0.00 4.30
172 173 1.423541 TGGTTGTAGCATGTTGTCCCT 59.576 47.619 0.00 0.00 0.00 4.20
173 174 1.904287 TGGTTGTAGCATGTTGTCCC 58.096 50.000 0.00 0.00 0.00 4.46
174 175 2.621055 TGTTGGTTGTAGCATGTTGTCC 59.379 45.455 0.00 0.00 0.00 4.02
175 176 3.980646 TGTTGGTTGTAGCATGTTGTC 57.019 42.857 0.00 0.00 0.00 3.18
176 177 3.951037 TCTTGTTGGTTGTAGCATGTTGT 59.049 39.130 0.00 0.00 0.00 3.32
177 178 4.290155 GTCTTGTTGGTTGTAGCATGTTG 58.710 43.478 0.00 0.00 0.00 3.33
178 179 3.003275 CGTCTTGTTGGTTGTAGCATGTT 59.997 43.478 0.00 0.00 0.00 2.71
179 180 2.548057 CGTCTTGTTGGTTGTAGCATGT 59.452 45.455 0.00 0.00 0.00 3.21
180 181 2.805671 TCGTCTTGTTGGTTGTAGCATG 59.194 45.455 0.00 0.00 0.00 4.06
181 182 3.120321 TCGTCTTGTTGGTTGTAGCAT 57.880 42.857 0.00 0.00 0.00 3.79
182 183 2.605837 TCGTCTTGTTGGTTGTAGCA 57.394 45.000 0.00 0.00 0.00 3.49
183 184 3.810373 CATTCGTCTTGTTGGTTGTAGC 58.190 45.455 0.00 0.00 0.00 3.58
184 185 3.498397 AGCATTCGTCTTGTTGGTTGTAG 59.502 43.478 0.00 0.00 0.00 2.74
185 186 3.249799 CAGCATTCGTCTTGTTGGTTGTA 59.750 43.478 0.00 0.00 0.00 2.41
186 187 2.033299 CAGCATTCGTCTTGTTGGTTGT 59.967 45.455 0.00 0.00 0.00 3.32
187 188 2.653890 CAGCATTCGTCTTGTTGGTTG 58.346 47.619 0.00 0.00 0.00 3.77
188 189 1.001378 GCAGCATTCGTCTTGTTGGTT 60.001 47.619 0.00 0.00 0.00 3.67
189 190 0.593128 GCAGCATTCGTCTTGTTGGT 59.407 50.000 0.00 0.00 0.00 3.67
190 191 0.592637 TGCAGCATTCGTCTTGTTGG 59.407 50.000 0.00 0.00 0.00 3.77
191 192 2.046313 GTTGCAGCATTCGTCTTGTTG 58.954 47.619 0.00 0.00 0.00 3.33
192 193 1.001378 GGTTGCAGCATTCGTCTTGTT 60.001 47.619 2.05 0.00 0.00 2.83
193 194 0.593128 GGTTGCAGCATTCGTCTTGT 59.407 50.000 2.05 0.00 0.00 3.16
194 195 0.453282 CGGTTGCAGCATTCGTCTTG 60.453 55.000 2.05 0.00 0.00 3.02
195 196 1.577328 CCGGTTGCAGCATTCGTCTT 61.577 55.000 14.28 0.00 0.00 3.01
196 197 2.034879 CCGGTTGCAGCATTCGTCT 61.035 57.895 14.28 0.00 0.00 4.18
197 198 1.017177 TACCGGTTGCAGCATTCGTC 61.017 55.000 15.04 0.00 0.00 4.20
198 199 1.004320 TACCGGTTGCAGCATTCGT 60.004 52.632 15.04 4.29 0.00 3.85
199 200 0.739462 TCTACCGGTTGCAGCATTCG 60.739 55.000 15.04 3.23 0.00 3.34
200 201 1.448985 TTCTACCGGTTGCAGCATTC 58.551 50.000 15.04 0.00 0.00 2.67
201 202 1.904287 TTTCTACCGGTTGCAGCATT 58.096 45.000 15.04 0.00 0.00 3.56
202 203 1.904287 TTTTCTACCGGTTGCAGCAT 58.096 45.000 15.04 0.00 0.00 3.79
203 204 1.681538 TTTTTCTACCGGTTGCAGCA 58.318 45.000 15.04 0.00 0.00 4.41
220 221 4.999751 TTTTCAACGCTTGCAACTTTTT 57.000 31.818 0.00 0.00 0.00 1.94
221 222 4.999751 TTTTTCAACGCTTGCAACTTTT 57.000 31.818 0.00 0.00 0.00 2.27
241 242 3.317711 TCAGTCGACCATGCAACATTTTT 59.682 39.130 13.01 0.00 0.00 1.94
242 243 2.884012 TCAGTCGACCATGCAACATTTT 59.116 40.909 13.01 0.00 0.00 1.82
243 244 2.485426 CTCAGTCGACCATGCAACATTT 59.515 45.455 13.01 0.00 0.00 2.32
244 245 2.079158 CTCAGTCGACCATGCAACATT 58.921 47.619 13.01 0.00 0.00 2.71
245 246 1.276138 TCTCAGTCGACCATGCAACAT 59.724 47.619 13.01 0.00 0.00 2.71
246 247 0.678950 TCTCAGTCGACCATGCAACA 59.321 50.000 13.01 0.00 0.00 3.33
247 248 1.071605 GTCTCAGTCGACCATGCAAC 58.928 55.000 13.01 3.16 0.00 4.17
248 249 0.969149 AGTCTCAGTCGACCATGCAA 59.031 50.000 13.01 0.00 34.46 4.08
249 250 0.969149 AAGTCTCAGTCGACCATGCA 59.031 50.000 13.01 0.00 34.46 3.96
250 251 1.354040 CAAGTCTCAGTCGACCATGC 58.646 55.000 13.01 0.00 34.46 4.06
251 252 1.273606 ACCAAGTCTCAGTCGACCATG 59.726 52.381 13.01 5.07 34.46 3.66
252 253 1.633774 ACCAAGTCTCAGTCGACCAT 58.366 50.000 13.01 0.00 34.46 3.55
253 254 1.410004 AACCAAGTCTCAGTCGACCA 58.590 50.000 13.01 0.00 34.46 4.02
254 255 3.655276 TTAACCAAGTCTCAGTCGACC 57.345 47.619 13.01 0.00 34.46 4.79
255 256 4.618965 AGTTTAACCAAGTCTCAGTCGAC 58.381 43.478 7.70 7.70 0.00 4.20
256 257 4.340097 TGAGTTTAACCAAGTCTCAGTCGA 59.660 41.667 0.00 0.00 35.97 4.20
257 258 4.617959 TGAGTTTAACCAAGTCTCAGTCG 58.382 43.478 0.00 0.00 35.97 4.18
261 262 4.340097 TCGACTGAGTTTAACCAAGTCTCA 59.660 41.667 18.96 8.29 35.97 3.27
262 263 4.680567 GTCGACTGAGTTTAACCAAGTCTC 59.319 45.833 18.96 11.75 35.97 3.36
263 264 4.341520 AGTCGACTGAGTTTAACCAAGTCT 59.658 41.667 19.30 4.96 35.97 3.24
264 265 4.444720 CAGTCGACTGAGTTTAACCAAGTC 59.555 45.833 36.73 14.21 46.59 3.01
265 266 4.369182 CAGTCGACTGAGTTTAACCAAGT 58.631 43.478 36.73 0.00 46.59 3.16
266 267 4.974103 CAGTCGACTGAGTTTAACCAAG 57.026 45.455 36.73 7.99 46.59 3.61
278 279 4.398247 GCTTGCTAAAAATCAGTCGACTG 58.602 43.478 34.76 34.76 45.08 3.51
279 280 3.437049 GGCTTGCTAAAAATCAGTCGACT 59.563 43.478 13.58 13.58 0.00 4.18
280 281 3.426292 GGGCTTGCTAAAAATCAGTCGAC 60.426 47.826 7.70 7.70 0.00 4.20
281 282 2.747446 GGGCTTGCTAAAAATCAGTCGA 59.253 45.455 0.00 0.00 0.00 4.20
282 283 2.476185 CGGGCTTGCTAAAAATCAGTCG 60.476 50.000 0.00 0.00 0.00 4.18
283 284 2.488153 ACGGGCTTGCTAAAAATCAGTC 59.512 45.455 0.00 0.00 0.00 3.51
284 285 2.514803 ACGGGCTTGCTAAAAATCAGT 58.485 42.857 0.00 0.00 0.00 3.41
285 286 3.575965 AACGGGCTTGCTAAAAATCAG 57.424 42.857 0.00 0.00 0.00 2.90
286 287 5.652994 ATTAACGGGCTTGCTAAAAATCA 57.347 34.783 0.00 0.00 0.00 2.57
287 288 8.468720 TTTTATTAACGGGCTTGCTAAAAATC 57.531 30.769 0.00 0.00 0.00 2.17
288 289 8.878769 CATTTTATTAACGGGCTTGCTAAAAAT 58.121 29.630 0.00 0.00 0.00 1.82
289 290 7.332182 CCATTTTATTAACGGGCTTGCTAAAAA 59.668 33.333 0.00 0.00 0.00 1.94
290 291 6.814146 CCATTTTATTAACGGGCTTGCTAAAA 59.186 34.615 0.00 0.00 0.00 1.52
291 292 6.071278 ACCATTTTATTAACGGGCTTGCTAAA 60.071 34.615 0.00 0.00 0.00 1.85
292 293 5.419471 ACCATTTTATTAACGGGCTTGCTAA 59.581 36.000 0.00 0.00 0.00 3.09
293 294 4.951094 ACCATTTTATTAACGGGCTTGCTA 59.049 37.500 0.00 0.00 0.00 3.49
294 295 3.767131 ACCATTTTATTAACGGGCTTGCT 59.233 39.130 0.00 0.00 0.00 3.91
295 296 4.118093 ACCATTTTATTAACGGGCTTGC 57.882 40.909 0.00 0.00 0.00 4.01
296 297 5.474825 ACAACCATTTTATTAACGGGCTTG 58.525 37.500 0.00 0.00 0.00 4.01
297 298 5.731957 ACAACCATTTTATTAACGGGCTT 57.268 34.783 0.00 0.00 0.00 4.35
298 299 6.681865 GCATACAACCATTTTATTAACGGGCT 60.682 38.462 0.00 0.00 0.00 5.19
299 300 5.460748 GCATACAACCATTTTATTAACGGGC 59.539 40.000 0.00 0.00 0.00 6.13
300 301 6.565234 TGCATACAACCATTTTATTAACGGG 58.435 36.000 0.00 0.00 0.00 5.28
301 302 7.112844 CGATGCATACAACCATTTTATTAACGG 59.887 37.037 0.00 0.00 0.00 4.44
302 303 7.642194 ACGATGCATACAACCATTTTATTAACG 59.358 33.333 0.00 0.00 0.00 3.18
303 304 8.850454 ACGATGCATACAACCATTTTATTAAC 57.150 30.769 0.00 0.00 0.00 2.01
304 305 8.132362 GGACGATGCATACAACCATTTTATTAA 58.868 33.333 0.00 0.00 0.00 1.40
305 306 7.283354 TGGACGATGCATACAACCATTTTATTA 59.717 33.333 0.00 0.00 0.00 0.98
306 307 6.096141 TGGACGATGCATACAACCATTTTATT 59.904 34.615 0.00 0.00 0.00 1.40
307 308 5.592282 TGGACGATGCATACAACCATTTTAT 59.408 36.000 0.00 0.00 0.00 1.40
308 309 4.944317 TGGACGATGCATACAACCATTTTA 59.056 37.500 0.00 0.00 0.00 1.52
309 310 3.761218 TGGACGATGCATACAACCATTTT 59.239 39.130 0.00 0.00 0.00 1.82
310 311 3.351740 TGGACGATGCATACAACCATTT 58.648 40.909 0.00 0.00 0.00 2.32
311 312 2.945008 CTGGACGATGCATACAACCATT 59.055 45.455 0.00 0.00 0.00 3.16
312 313 2.170397 TCTGGACGATGCATACAACCAT 59.830 45.455 0.00 0.00 0.00 3.55
313 314 1.552792 TCTGGACGATGCATACAACCA 59.447 47.619 0.00 6.69 0.00 3.67
314 315 2.309528 TCTGGACGATGCATACAACC 57.690 50.000 0.00 1.87 0.00 3.77
315 316 3.867055 CATCTGGACGATGCATACAAC 57.133 47.619 0.00 0.00 42.75 3.32
324 325 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
325 326 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
326 327 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
327 328 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
328 329 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
329 330 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
330 331 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
342 343 2.120737 AAAAAGAGGACGACCCCCGG 62.121 60.000 0.00 0.00 43.93 5.73
343 344 0.672711 GAAAAAGAGGACGACCCCCG 60.673 60.000 0.00 0.00 45.44 5.73
344 345 0.691332 AGAAAAAGAGGACGACCCCC 59.309 55.000 0.00 0.00 36.73 5.40
345 346 3.690475 TTAGAAAAAGAGGACGACCCC 57.310 47.619 0.00 0.00 36.73 4.95
367 368 1.000717 CGATGGGACGCTTTGGTTTTT 60.001 47.619 0.00 0.00 0.00 1.94
368 369 0.596082 CGATGGGACGCTTTGGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
369 370 0.536460 ACGATGGGACGCTTTGGTTT 60.536 50.000 0.00 0.00 36.70 3.27
370 371 0.536460 AACGATGGGACGCTTTGGTT 60.536 50.000 0.00 0.00 36.70 3.67
371 372 1.072505 AACGATGGGACGCTTTGGT 59.927 52.632 0.00 0.00 36.70 3.67
372 373 1.501741 CAACGATGGGACGCTTTGG 59.498 57.895 0.00 0.00 36.70 3.28
373 374 1.154225 GCAACGATGGGACGCTTTG 60.154 57.895 0.00 0.00 36.70 2.77
374 375 0.036765 TAGCAACGATGGGACGCTTT 60.037 50.000 0.00 0.00 36.70 3.51
375 376 0.739813 GTAGCAACGATGGGACGCTT 60.740 55.000 0.00 0.00 36.70 4.68
376 377 1.153628 GTAGCAACGATGGGACGCT 60.154 57.895 0.00 0.00 36.70 5.07
377 378 0.810031 ATGTAGCAACGATGGGACGC 60.810 55.000 0.00 0.00 36.70 5.19
378 379 2.502213 TATGTAGCAACGATGGGACG 57.498 50.000 0.00 0.00 39.31 4.79
379 380 4.051922 CTCTTATGTAGCAACGATGGGAC 58.948 47.826 0.00 0.00 0.00 4.46
448 449 1.264288 CGGCTGTTGACTTTGAACTCC 59.736 52.381 0.00 0.00 0.00 3.85
450 451 2.038387 ACGGCTGTTGACTTTGAACT 57.962 45.000 0.00 0.00 0.00 3.01
455 456 1.308998 CTGGAACGGCTGTTGACTTT 58.691 50.000 17.49 0.00 38.78 2.66
468 471 4.992688 TGTCAATGAACACAAACTGGAAC 58.007 39.130 0.00 0.00 0.00 3.62
471 474 3.374745 GCTGTCAATGAACACAAACTGG 58.625 45.455 0.00 0.00 0.00 4.00
474 477 3.181487 ACAGGCTGTCAATGAACACAAAC 60.181 43.478 15.88 0.00 0.00 2.93
498 501 4.966965 TTCTGATCCTTCTCGTCACTAC 57.033 45.455 0.00 0.00 0.00 2.73
504 507 2.676463 GCTGCTTTCTGATCCTTCTCGT 60.676 50.000 0.00 0.00 0.00 4.18
507 510 2.940527 GCTGCTGCTTTCTGATCCTTCT 60.941 50.000 8.53 0.00 36.03 2.85
508 511 1.401199 GCTGCTGCTTTCTGATCCTTC 59.599 52.381 8.53 0.00 36.03 3.46
572 575 5.458015 GTTGTTGTATTCTTGTAGGCAACC 58.542 41.667 0.00 0.00 36.39 3.77
586 694 9.769093 GTCAAGCTATATTTTTCGTTGTTGTAT 57.231 29.630 0.00 0.00 0.00 2.29
615 724 5.344743 TTTTGTCATTGCTGGTAACCAAA 57.655 34.783 0.00 0.00 30.80 3.28
716 825 1.227674 GCCGCCAAGGACTCATAGG 60.228 63.158 0.00 0.00 45.00 2.57
1020 1129 9.436957 CTAAGGCTTATGACTAGTTTGAAGAAA 57.563 33.333 7.54 0.00 0.00 2.52
1032 1141 2.507471 AGCAAGGCTAAGGCTTATGACT 59.493 45.455 7.54 6.82 46.59 3.41
1033 1142 2.615912 CAGCAAGGCTAAGGCTTATGAC 59.384 50.000 7.54 4.56 46.59 3.06
1248 1357 6.771188 AACACAAACGATACAGAGAAAGAG 57.229 37.500 0.00 0.00 0.00 2.85
1285 1394 1.374758 CACTCAAGTCAGGGTCGGC 60.375 63.158 0.00 0.00 0.00 5.54
1629 1738 4.127744 ATGGGGGCCATGGTCACG 62.128 66.667 20.13 0.00 43.39 4.35
1844 1953 0.036858 GGACTGAGCCTTCTGACCAC 60.037 60.000 0.00 0.00 37.17 4.16
1946 2055 6.496565 ACATAGCTCAGCATACCTTAGATTCT 59.503 38.462 0.00 0.00 0.00 2.40
2102 2211 9.358872 TCACAGCGATATTGAATCTTGATATAC 57.641 33.333 0.00 0.00 0.00 1.47
2139 2248 3.003275 TCATTCCTTGTTTTGAGTCGTGC 59.997 43.478 0.00 0.00 0.00 5.34
2448 2557 2.118313 TTCGTCCACTGATCTCGGTA 57.882 50.000 0.00 0.00 33.39 4.02
2463 2572 4.315803 CAAGACCAAAGTCACCTATTCGT 58.684 43.478 0.00 0.00 46.15 3.85
2653 2764 1.120530 TGGCCTTCCTCCGTATCTTC 58.879 55.000 3.32 0.00 0.00 2.87
2668 2782 2.158842 AGTCAACTAGCATGAGATGGCC 60.159 50.000 0.00 0.00 0.00 5.36
2763 2877 0.097674 GTGCTAAGCATGCTTCACCG 59.902 55.000 35.10 21.68 41.91 4.94
2842 2956 3.264193 TCCTTGTTGAGGTACTGCATGAT 59.736 43.478 0.00 0.00 46.39 2.45
2945 3059 6.072673 TGCTGATGAAGAATGTGATATGATGC 60.073 38.462 0.00 0.00 0.00 3.91
3189 3303 0.613260 TCTCCATGTACCCACTGTGC 59.387 55.000 1.29 0.00 0.00 4.57
3447 3600 3.307691 CCTCTTGTTGAGTGGAAGCCATA 60.308 47.826 0.00 0.00 40.73 2.74
3652 3805 3.575687 CCAGTTGCCAGAGAAAATTTCCT 59.424 43.478 1.57 0.00 0.00 3.36
3704 3857 2.045926 GCCGTGGTGCTTGAGGAT 60.046 61.111 0.00 0.00 0.00 3.24
3833 3986 1.808891 CGGATAACCCCTTGCCTAACG 60.809 57.143 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.