Multiple sequence alignment - TraesCS3D01G303700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G303700 chr3D 100.000 7126 0 0 1 7126 418403375 418410500 0.000000e+00 13160
1 TraesCS3D01G303700 chr3D 90.882 340 11 8 6563 6882 418481907 418482246 8.490000e-119 438
2 TraesCS3D01G303700 chr3D 89.683 252 9 5 6645 6879 418704887 418705138 8.980000e-79 305
3 TraesCS3D01G303700 chr3D 86.875 160 10 6 6967 7126 416404669 416404521 1.230000e-37 169
4 TraesCS3D01G303700 chr3D 88.321 137 5 6 6990 7126 418482276 418482401 3.440000e-33 154
5 TraesCS3D01G303700 chr3D 87.200 125 8 2 7002 7126 418705188 418705304 1.250000e-27 135
6 TraesCS3D01G303700 chr3A 93.656 6557 243 82 595 7078 532651233 532644777 0.000000e+00 9644
7 TraesCS3D01G303700 chr3A 87.219 579 38 20 44 602 532651828 532651266 1.690000e-175 627
8 TraesCS3D01G303700 chr3A 88.800 125 6 2 7002 7126 532488685 532488569 5.760000e-31 147
9 TraesCS3D01G303700 chr3B 94.624 2232 65 21 4935 7126 544816792 544819008 0.000000e+00 3406
10 TraesCS3D01G303700 chr3B 88.000 125 7 2 7002 7126 545008511 545008627 2.680000e-29 141
11 TraesCS3D01G303700 chr3B 84.516 155 9 2 6742 6882 545008319 545008472 9.640000e-29 139
12 TraesCS3D01G303700 chr3B 87.200 125 8 2 7002 7126 544921866 544921982 1.250000e-27 135
13 TraesCS3D01G303700 chr3B 83.871 155 10 2 6742 6882 544921674 544921827 4.480000e-27 134
14 TraesCS3D01G303700 chr4B 83.636 110 14 4 3683 3789 53474783 53474891 4.550000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G303700 chr3D 418403375 418410500 7125 False 13160.0 13160 100.0000 1 7126 1 chr3D.!!$F1 7125
1 TraesCS3D01G303700 chr3A 532644777 532651828 7051 True 5135.5 9644 90.4375 44 7078 2 chr3A.!!$R2 7034
2 TraesCS3D01G303700 chr3B 544816792 544819008 2216 False 3406.0 3406 94.6240 4935 7126 1 chr3B.!!$F1 2191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 942 0.031010 AGCTATCCGTTCCCTTCCCT 60.031 55.000 0.00 0.0 0.00 4.20 F
1214 1313 0.036732 TCTGGTGCGAATCTTGCCTT 59.963 50.000 0.00 0.0 0.00 4.35 F
1215 1314 0.169672 CTGGTGCGAATCTTGCCTTG 59.830 55.000 0.00 0.0 0.00 3.61 F
1237 1336 0.249398 AGCGGCGAATTACTCCAGTT 59.751 50.000 12.98 0.0 0.00 3.16 F
1921 2041 0.253160 ATCCTCTTGCACCCACCCTA 60.253 55.000 0.00 0.0 0.00 3.53 F
2099 2221 1.136110 CACTTGTGTTGTTTGACCCCC 59.864 52.381 0.00 0.0 0.00 5.40 F
2621 2744 1.188863 TTAGCTAACCCGACACCCTC 58.811 55.000 0.86 0.0 0.00 4.30 F
3365 3491 0.249996 AACCGAACCGTTAGTGGTGG 60.250 55.000 3.73 0.0 42.89 4.61 F
4177 4303 0.178967 TTGATGCAGCAAGGGGACAA 60.179 50.000 14.49 0.0 0.00 3.18 F
4181 4307 1.108727 TGCAGCAAGGGGACAACAAG 61.109 55.000 0.00 0.0 0.00 3.16 F
4649 4775 1.216175 CTCCAACCATCCCACCATCAT 59.784 52.381 0.00 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2022 0.253160 TAGGGTGGGTGCAAGAGGAT 60.253 55.000 0.00 0.0 0.00 3.24 R
2612 2735 0.465705 ATGGTATGCAGAGGGTGTCG 59.534 55.000 0.00 0.0 0.00 4.35 R
3097 3223 2.297880 GGCCTTTCATGGGTAAAAACGT 59.702 45.455 0.00 0.0 0.00 3.99 R
3215 3341 1.065926 ACTGAGATGAAGGCGCAATGA 60.066 47.619 10.83 0.0 0.00 2.57 R
3363 3489 0.036164 CACCAGGATTCCGTGTTCCA 59.964 55.000 0.00 0.0 34.27 3.53 R
3364 3490 0.036306 ACACCAGGATTCCGTGTTCC 59.964 55.000 9.75 0.0 0.00 3.62 R
4161 4287 0.469705 TTGTTGTCCCCTTGCTGCAT 60.470 50.000 1.84 0.0 0.00 3.96 R
5205 5331 1.078848 CAGTGACCCTGGCTGCTAC 60.079 63.158 0.00 0.0 37.54 3.58 R
6002 6128 0.592247 GTTGCTGCTCGTTTGTGTGG 60.592 55.000 0.00 0.0 0.00 4.17 R
6023 6149 1.533338 GCGAAATCAAGCAGCATCTGG 60.533 52.381 0.00 0.0 31.21 3.86 R
6404 6535 2.174363 TCATCCACTGCACAGAGTTG 57.826 50.000 4.31 1.7 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.490139 AAGCATCGTGGAGTATCATTTTG 57.510 39.130 0.00 0.00 36.25 2.44
24 25 4.769688 AGCATCGTGGAGTATCATTTTGA 58.230 39.130 0.00 0.00 36.25 2.69
25 26 5.185454 AGCATCGTGGAGTATCATTTTGAA 58.815 37.500 0.00 0.00 36.25 2.69
26 27 5.065218 AGCATCGTGGAGTATCATTTTGAAC 59.935 40.000 0.00 0.00 36.25 3.18
27 28 5.065218 GCATCGTGGAGTATCATTTTGAACT 59.935 40.000 0.00 0.00 36.25 3.01
28 29 6.257849 GCATCGTGGAGTATCATTTTGAACTA 59.742 38.462 0.00 0.00 36.25 2.24
29 30 7.201609 GCATCGTGGAGTATCATTTTGAACTAA 60.202 37.037 0.00 0.00 36.25 2.24
30 31 8.664798 CATCGTGGAGTATCATTTTGAACTAAA 58.335 33.333 0.00 0.00 36.25 1.85
31 32 8.610248 TCGTGGAGTATCATTTTGAACTAAAA 57.390 30.769 0.00 0.00 42.10 1.52
32 33 8.500773 TCGTGGAGTATCATTTTGAACTAAAAC 58.499 33.333 0.00 0.00 40.80 2.43
33 34 7.749126 CGTGGAGTATCATTTTGAACTAAAACC 59.251 37.037 0.00 0.00 40.80 3.27
34 35 8.573035 GTGGAGTATCATTTTGAACTAAAACCA 58.427 33.333 0.00 0.00 40.80 3.67
35 36 8.573035 TGGAGTATCATTTTGAACTAAAACCAC 58.427 33.333 0.00 0.00 40.80 4.16
36 37 7.749126 GGAGTATCATTTTGAACTAAAACCACG 59.251 37.037 0.00 0.00 40.80 4.94
37 38 7.590279 AGTATCATTTTGAACTAAAACCACGG 58.410 34.615 0.00 0.00 40.80 4.94
38 39 5.838531 TCATTTTGAACTAAAACCACGGT 57.161 34.783 0.00 0.00 40.80 4.83
39 40 6.939132 TCATTTTGAACTAAAACCACGGTA 57.061 33.333 0.00 0.00 40.80 4.02
40 41 6.727215 TCATTTTGAACTAAAACCACGGTAC 58.273 36.000 0.00 0.00 40.80 3.34
41 42 5.497635 TTTTGAACTAAAACCACGGTACC 57.502 39.130 0.16 0.16 33.48 3.34
42 43 4.420522 TTGAACTAAAACCACGGTACCT 57.579 40.909 10.90 0.00 0.00 3.08
59 60 5.566627 CGGTACCTACTTTAAAACGGAGGAA 60.567 44.000 10.90 0.00 0.00 3.36
71 72 6.702716 AAAACGGAGGAAGTAACATTTTGA 57.297 33.333 0.00 0.00 0.00 2.69
85 86 9.030301 AGTAACATTTTGATGTAAACAAAGCAC 57.970 29.630 0.00 0.00 39.79 4.40
94 95 1.555967 AAACAAAGCACCACACCACT 58.444 45.000 0.00 0.00 0.00 4.00
95 96 2.428544 AACAAAGCACCACACCACTA 57.571 45.000 0.00 0.00 0.00 2.74
138 143 7.928706 AGTAACAGTAACATAGGATGCTTGATC 59.071 37.037 0.00 0.00 0.00 2.92
165 178 3.315749 CCTCGAATACAGTACCTCCACTC 59.684 52.174 0.00 0.00 0.00 3.51
184 197 0.899717 CCCCATCACCACCAACCAAG 60.900 60.000 0.00 0.00 0.00 3.61
207 220 4.093556 GTGCTAACAGAGTGCTAAATCCAC 59.906 45.833 0.00 0.00 0.00 4.02
212 225 0.623723 GAGTGCTAAATCCACCCCCA 59.376 55.000 0.00 0.00 33.75 4.96
227 240 2.926329 ACCCCCAAAGACCATCATTACT 59.074 45.455 0.00 0.00 0.00 2.24
228 241 3.053619 ACCCCCAAAGACCATCATTACTC 60.054 47.826 0.00 0.00 0.00 2.59
229 242 3.206150 CCCCAAAGACCATCATTACTCG 58.794 50.000 0.00 0.00 0.00 4.18
297 311 3.194861 GACACAGTTTAGCAGTGACACA 58.805 45.455 8.59 0.00 37.91 3.72
299 313 2.935849 CACAGTTTAGCAGTGACACACA 59.064 45.455 8.59 0.00 36.82 3.72
300 314 3.373748 CACAGTTTAGCAGTGACACACAA 59.626 43.478 8.59 0.00 36.82 3.33
301 315 4.006989 ACAGTTTAGCAGTGACACACAAA 58.993 39.130 8.59 0.00 36.74 2.83
302 316 4.142687 ACAGTTTAGCAGTGACACACAAAC 60.143 41.667 8.59 11.19 36.74 2.93
303 317 4.006989 AGTTTAGCAGTGACACACAAACA 58.993 39.130 8.59 0.00 36.74 2.83
304 318 4.095610 GTTTAGCAGTGACACACAAACAC 58.904 43.478 8.59 0.00 36.74 3.32
305 319 1.819928 AGCAGTGACACACAAACACA 58.180 45.000 8.59 0.00 36.74 3.72
346 360 2.876581 AGTCCCATCCAAAAACAGGAC 58.123 47.619 0.00 0.00 43.33 3.85
356 370 4.582656 TCCAAAAACAGGACACCACATAAG 59.417 41.667 0.00 0.00 0.00 1.73
359 373 6.208644 CAAAAACAGGACACCACATAAGAAG 58.791 40.000 0.00 0.00 0.00 2.85
361 375 4.543590 ACAGGACACCACATAAGAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
362 376 4.160329 ACAGGACACCACATAAGAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
363 377 4.221703 ACAGGACACCACATAAGAAGAGAG 59.778 45.833 0.00 0.00 0.00 3.20
365 379 4.709397 AGGACACCACATAAGAAGAGAGAG 59.291 45.833 0.00 0.00 0.00 3.20
366 380 4.707448 GGACACCACATAAGAAGAGAGAGA 59.293 45.833 0.00 0.00 0.00 3.10
367 381 5.362430 GGACACCACATAAGAAGAGAGAGAT 59.638 44.000 0.00 0.00 0.00 2.75
368 382 6.219417 ACACCACATAAGAAGAGAGAGATG 57.781 41.667 0.00 0.00 0.00 2.90
369 383 5.128499 ACACCACATAAGAAGAGAGAGATGG 59.872 44.000 0.00 0.00 0.00 3.51
370 384 5.128499 CACCACATAAGAAGAGAGAGATGGT 59.872 44.000 0.00 0.00 37.19 3.55
371 385 5.362430 ACCACATAAGAAGAGAGAGATGGTC 59.638 44.000 0.00 0.00 31.04 4.02
372 386 5.598005 CCACATAAGAAGAGAGAGATGGTCT 59.402 44.000 0.00 0.00 38.71 3.85
388 402 7.016072 AGAGATGGTCTCAAAGAAAGAAAGAGA 59.984 37.037 9.42 0.00 45.73 3.10
389 403 7.160726 AGATGGTCTCAAAGAAAGAAAGAGAG 58.839 38.462 0.00 0.00 36.15 3.20
395 409 8.141268 GTCTCAAAGAAAGAAAGAGAGAGAGAA 58.859 37.037 0.00 0.00 36.15 2.87
396 410 8.359642 TCTCAAAGAAAGAAAGAGAGAGAGAAG 58.640 37.037 0.00 0.00 32.11 2.85
397 411 7.441017 TCAAAGAAAGAAAGAGAGAGAGAAGG 58.559 38.462 0.00 0.00 0.00 3.46
398 412 6.358974 AAGAAAGAAAGAGAGAGAGAAGGG 57.641 41.667 0.00 0.00 0.00 3.95
404 421 5.719563 AGAAAGAGAGAGAGAAGGGGTAAAG 59.280 44.000 0.00 0.00 0.00 1.85
465 482 0.319813 AATCAAGCCACGCCAAAAGC 60.320 50.000 0.00 0.00 38.52 3.51
474 492 2.042831 CGCCAAAAGCCTCCCTCTG 61.043 63.158 0.00 0.00 38.78 3.35
489 507 2.817258 CCCTCTGCCTCTCTTATCTACG 59.183 54.545 0.00 0.00 0.00 3.51
523 541 4.800023 TCTCCCATCATCTACCGTTTCTA 58.200 43.478 0.00 0.00 0.00 2.10
548 566 1.064166 CACTTCCCCTGCTTGATCCAT 60.064 52.381 0.00 0.00 0.00 3.41
576 594 1.669440 CCTTGCAAGGCAACAGCAT 59.331 52.632 31.70 0.00 46.88 3.79
578 596 1.425412 CTTGCAAGGCAACAGCATTC 58.575 50.000 19.14 0.00 46.88 2.67
583 601 3.069300 TGCAAGGCAACAGCATTCTTTTA 59.931 39.130 0.00 0.00 43.60 1.52
584 602 4.248058 GCAAGGCAACAGCATTCTTTTAT 58.752 39.130 0.00 0.00 39.39 1.40
585 603 5.047448 TGCAAGGCAACAGCATTCTTTTATA 60.047 36.000 0.00 0.00 43.60 0.98
587 605 7.147932 TGCAAGGCAACAGCATTCTTTTATATA 60.148 33.333 0.00 0.00 43.60 0.86
622 681 2.941720 TGCAACAAAAATGTGAAAGCCC 59.058 40.909 0.00 0.00 0.00 5.19
623 682 3.205338 GCAACAAAAATGTGAAAGCCCT 58.795 40.909 0.00 0.00 0.00 5.19
625 684 4.813697 GCAACAAAAATGTGAAAGCCCTAA 59.186 37.500 0.00 0.00 0.00 2.69
626 685 5.469760 GCAACAAAAATGTGAAAGCCCTAAT 59.530 36.000 0.00 0.00 0.00 1.73
629 688 5.178061 CAAAAATGTGAAAGCCCTAATCCC 58.822 41.667 0.00 0.00 0.00 3.85
630 689 2.348411 ATGTGAAAGCCCTAATCCCG 57.652 50.000 0.00 0.00 0.00 5.14
637 699 2.515901 CCCTAATCCCGCCCAAGG 59.484 66.667 0.00 0.00 0.00 3.61
650 712 2.356667 CAAGGGGGACAAGGAGGC 59.643 66.667 0.00 0.00 0.00 4.70
660 722 3.257375 GGGACAAGGAGGCGTTTATTTTT 59.743 43.478 0.00 0.00 0.00 1.94
663 725 3.892588 ACAAGGAGGCGTTTATTTTTGGA 59.107 39.130 0.00 0.00 0.00 3.53
671 733 5.010213 AGGCGTTTATTTTTGGACTGCTTTA 59.990 36.000 0.00 0.00 0.00 1.85
680 742 7.565323 TTTTTGGACTGCTTTAAATTTGCAT 57.435 28.000 0.00 0.00 36.07 3.96
779 845 2.917713 AGGCAGGAGAGAGAAAGAGA 57.082 50.000 0.00 0.00 0.00 3.10
784 851 3.707316 CAGGAGAGAGAAAGAGAAGGGA 58.293 50.000 0.00 0.00 0.00 4.20
786 853 3.031013 GGAGAGAGAAAGAGAAGGGAGG 58.969 54.545 0.00 0.00 0.00 4.30
788 855 2.115427 GAGAGAAAGAGAAGGGAGGGG 58.885 57.143 0.00 0.00 0.00 4.79
809 876 2.666317 GAGAGAGAAAGAGGAGGGAGG 58.334 57.143 0.00 0.00 0.00 4.30
810 877 1.290732 AGAGAGAAAGAGGAGGGAGGG 59.709 57.143 0.00 0.00 0.00 4.30
812 879 0.692756 GAGAAAGAGGAGGGAGGGGG 60.693 65.000 0.00 0.00 0.00 5.40
815 882 1.162951 AAAGAGGAGGGAGGGGGAGA 61.163 60.000 0.00 0.00 0.00 3.71
818 885 1.869452 AGGAGGGAGGGGGAGAAGT 60.869 63.158 0.00 0.00 0.00 3.01
819 886 0.557907 AGGAGGGAGGGGGAGAAGTA 60.558 60.000 0.00 0.00 0.00 2.24
820 887 0.105401 GGAGGGAGGGGGAGAAGTAG 60.105 65.000 0.00 0.00 0.00 2.57
822 889 0.557907 AGGGAGGGGGAGAAGTAGGA 60.558 60.000 0.00 0.00 0.00 2.94
823 890 0.398806 GGGAGGGGGAGAAGTAGGAC 60.399 65.000 0.00 0.00 0.00 3.85
824 891 0.398806 GGAGGGGGAGAAGTAGGACC 60.399 65.000 0.00 0.00 0.00 4.46
825 892 0.756070 GAGGGGGAGAAGTAGGACCG 60.756 65.000 0.00 0.00 0.00 4.79
828 895 0.756070 GGGGAGAAGTAGGACCGAGG 60.756 65.000 0.00 0.00 0.00 4.63
829 896 0.756070 GGGAGAAGTAGGACCGAGGG 60.756 65.000 0.00 0.00 0.00 4.30
830 897 0.258194 GGAGAAGTAGGACCGAGGGA 59.742 60.000 0.00 0.00 0.00 4.20
831 898 1.682740 GAGAAGTAGGACCGAGGGAG 58.317 60.000 0.00 0.00 0.00 4.30
833 900 0.683504 GAAGTAGGACCGAGGGAGCA 60.684 60.000 0.00 0.00 0.00 4.26
834 901 0.252103 AAGTAGGACCGAGGGAGCAA 60.252 55.000 0.00 0.00 0.00 3.91
835 902 0.252103 AGTAGGACCGAGGGAGCAAA 60.252 55.000 0.00 0.00 0.00 3.68
836 903 0.175989 GTAGGACCGAGGGAGCAAAG 59.824 60.000 0.00 0.00 0.00 2.77
837 904 1.614241 TAGGACCGAGGGAGCAAAGC 61.614 60.000 0.00 0.00 0.00 3.51
838 905 2.347490 GACCGAGGGAGCAAAGCA 59.653 61.111 0.00 0.00 0.00 3.91
839 906 2.032681 ACCGAGGGAGCAAAGCAC 59.967 61.111 0.00 0.00 0.00 4.40
840 907 2.348998 CCGAGGGAGCAAAGCACT 59.651 61.111 0.00 0.00 0.00 4.40
864 931 4.708968 GCCGAGCCGAGCTATCCG 62.709 72.222 0.00 0.00 39.88 4.18
871 938 2.029307 GCCGAGCTATCCGTTCCCTT 62.029 60.000 0.00 0.00 0.00 3.95
872 939 0.032267 CCGAGCTATCCGTTCCCTTC 59.968 60.000 0.00 0.00 0.00 3.46
873 940 0.032267 CGAGCTATCCGTTCCCTTCC 59.968 60.000 0.00 0.00 0.00 3.46
874 941 0.393448 GAGCTATCCGTTCCCTTCCC 59.607 60.000 0.00 0.00 0.00 3.97
875 942 0.031010 AGCTATCCGTTCCCTTCCCT 60.031 55.000 0.00 0.00 0.00 4.20
876 943 0.393448 GCTATCCGTTCCCTTCCCTC 59.607 60.000 0.00 0.00 0.00 4.30
877 944 0.674534 CTATCCGTTCCCTTCCCTCG 59.325 60.000 0.00 0.00 0.00 4.63
878 945 1.397390 TATCCGTTCCCTTCCCTCGC 61.397 60.000 0.00 0.00 0.00 5.03
879 946 3.702048 CCGTTCCCTTCCCTCGCA 61.702 66.667 0.00 0.00 0.00 5.10
880 947 2.434359 CGTTCCCTTCCCTCGCAC 60.434 66.667 0.00 0.00 0.00 5.34
881 948 2.434359 GTTCCCTTCCCTCGCACG 60.434 66.667 0.00 0.00 0.00 5.34
882 949 4.388499 TTCCCTTCCCTCGCACGC 62.388 66.667 0.00 0.00 0.00 5.34
885 952 4.680237 CCTTCCCTCGCACGCACA 62.680 66.667 0.00 0.00 0.00 4.57
886 953 3.114616 CTTCCCTCGCACGCACAG 61.115 66.667 0.00 0.00 0.00 3.66
887 954 4.680237 TTCCCTCGCACGCACAGG 62.680 66.667 0.00 0.00 0.00 4.00
904 971 0.534412 AGGCACAACTCTCAGATCCG 59.466 55.000 0.00 0.00 0.00 4.18
911 978 0.827368 ACTCTCAGATCCGAAAGCCC 59.173 55.000 0.00 0.00 0.00 5.19
947 1026 1.007271 GCCTAGCTTAGATGCGCGA 60.007 57.895 12.10 0.00 38.13 5.87
977 1056 3.490759 CCGCCGCTGCTACTGTTG 61.491 66.667 0.00 0.00 34.43 3.33
1056 1135 2.726351 CGCTTCCTCCTCCTCCACC 61.726 68.421 0.00 0.00 0.00 4.61
1089 1168 3.499737 GCCGGCGTGGTGAATGAG 61.500 66.667 12.58 0.00 41.21 2.90
1092 1171 1.635663 CCGGCGTGGTGAATGAGTTC 61.636 60.000 6.01 0.00 34.85 3.01
1100 1179 1.005037 TGAATGAGTTCGGTGCGCT 60.005 52.632 9.73 0.00 37.15 5.92
1107 1186 2.026879 TTCGGTGCGCTTTTTGCC 59.973 55.556 9.73 0.25 38.78 4.52
1110 1189 4.279043 GGTGCGCTTTTTGCCGGT 62.279 61.111 9.73 0.00 38.78 5.28
1133 1212 0.745845 CCTGGGAGCGTTTGATCTGG 60.746 60.000 0.00 0.00 0.00 3.86
1171 1250 1.391157 TTGTTGGGTTGCTGGTGCTC 61.391 55.000 0.00 0.00 40.48 4.26
1172 1251 2.594303 TTGGGTTGCTGGTGCTCG 60.594 61.111 0.00 0.00 40.48 5.03
1173 1252 4.641645 TGGGTTGCTGGTGCTCGG 62.642 66.667 0.00 0.00 40.48 4.63
1212 1311 0.449388 CTTCTGGTGCGAATCTTGCC 59.551 55.000 0.00 0.00 0.00 4.52
1214 1313 0.036732 TCTGGTGCGAATCTTGCCTT 59.963 50.000 0.00 0.00 0.00 4.35
1215 1314 0.169672 CTGGTGCGAATCTTGCCTTG 59.830 55.000 0.00 0.00 0.00 3.61
1218 1317 1.603171 TGCGAATCTTGCCTTGCCA 60.603 52.632 0.00 0.00 0.00 4.92
1219 1318 1.138247 GCGAATCTTGCCTTGCCAG 59.862 57.895 0.00 0.00 0.00 4.85
1220 1319 1.138247 CGAATCTTGCCTTGCCAGC 59.862 57.895 0.00 0.00 0.00 4.85
1221 1320 1.138247 GAATCTTGCCTTGCCAGCG 59.862 57.895 0.00 0.00 0.00 5.18
1232 1331 3.014856 GCCAGCGGCGAATTACTC 58.985 61.111 12.98 0.00 39.62 2.59
1233 1332 2.534903 GCCAGCGGCGAATTACTCC 61.535 63.158 12.98 0.00 39.62 3.85
1234 1333 1.153449 CCAGCGGCGAATTACTCCA 60.153 57.895 12.98 0.00 0.00 3.86
1235 1334 1.154205 CCAGCGGCGAATTACTCCAG 61.154 60.000 12.98 0.00 0.00 3.86
1236 1335 0.460284 CAGCGGCGAATTACTCCAGT 60.460 55.000 12.98 0.00 0.00 4.00
1237 1336 0.249398 AGCGGCGAATTACTCCAGTT 59.751 50.000 12.98 0.00 0.00 3.16
1238 1337 0.373716 GCGGCGAATTACTCCAGTTG 59.626 55.000 12.98 0.00 0.00 3.16
1239 1338 1.006832 CGGCGAATTACTCCAGTTGG 58.993 55.000 0.00 0.00 0.00 3.77
1240 1339 1.379527 GGCGAATTACTCCAGTTGGG 58.620 55.000 0.00 0.00 35.41 4.12
1241 1340 0.733150 GCGAATTACTCCAGTTGGGC 59.267 55.000 0.00 0.00 36.21 5.36
1242 1341 1.379527 CGAATTACTCCAGTTGGGCC 58.620 55.000 0.00 0.00 36.21 5.80
1243 1342 1.065418 CGAATTACTCCAGTTGGGCCT 60.065 52.381 4.53 0.00 36.21 5.19
1244 1343 2.644676 GAATTACTCCAGTTGGGCCTC 58.355 52.381 4.53 0.00 36.21 4.70
1245 1344 0.919710 ATTACTCCAGTTGGGCCTCC 59.080 55.000 4.53 0.00 36.21 4.30
1246 1345 1.205460 TTACTCCAGTTGGGCCTCCC 61.205 60.000 4.53 0.00 45.71 4.30
1272 1371 0.723981 GGCGAGCTCAAGACATGTTC 59.276 55.000 15.40 0.00 0.00 3.18
1298 1398 2.844946 TGTTCGCTTGATTGGTCTTCA 58.155 42.857 0.00 0.00 0.00 3.02
1340 1459 4.884164 AGCTTGTAATCTGGGTAAAGATGC 59.116 41.667 0.00 0.00 36.99 3.91
1354 1473 7.067372 TGGGTAAAGATGCTAATTTGATCTGTG 59.933 37.037 0.00 0.00 0.00 3.66
1534 1653 0.908198 GTGGGAGAAGAGGTGCTGAT 59.092 55.000 0.00 0.00 0.00 2.90
1540 1659 0.462759 GAAGAGGTGCTGATTCCGGG 60.463 60.000 0.00 0.00 0.00 5.73
1603 1722 1.067283 TGGCCTTGTTTGTGTTGTGTG 60.067 47.619 3.32 0.00 0.00 3.82
1609 1728 2.408050 TGTTTGTGTTGTGTGTTTGGC 58.592 42.857 0.00 0.00 0.00 4.52
1633 1752 3.133691 TCATGCGTGCTTGATCCTATTC 58.866 45.455 0.00 0.00 0.00 1.75
1646 1765 1.591594 CTATTCGATGGCGTGCGGT 60.592 57.895 0.00 0.00 38.98 5.68
1655 1774 2.584967 GGCGTGCGGTTTTTGCAAG 61.585 57.895 0.00 0.00 45.23 4.01
1675 1794 5.178797 CAAGTTGGATGTTAGTAGTGGAGG 58.821 45.833 0.00 0.00 0.00 4.30
1684 1803 1.183549 AGTAGTGGAGGGTTAGTGCG 58.816 55.000 0.00 0.00 0.00 5.34
1695 1814 1.065709 GGTTAGTGCGGGAGGAATCAA 60.066 52.381 0.00 0.00 0.00 2.57
1709 1828 6.836007 GGGAGGAATCAAGAATAAATCCTTGT 59.164 38.462 0.00 0.00 40.32 3.16
1723 1842 0.991355 CCTTGTGGGCCTATGGGGTA 60.991 60.000 4.53 0.00 37.43 3.69
1724 1843 0.923358 CTTGTGGGCCTATGGGGTAA 59.077 55.000 4.53 0.00 37.43 2.85
1725 1844 1.499007 CTTGTGGGCCTATGGGGTAAT 59.501 52.381 4.53 0.00 37.43 1.89
1726 1845 2.516544 TGTGGGCCTATGGGGTAATA 57.483 50.000 4.53 0.00 37.43 0.98
1727 1846 3.012570 TGTGGGCCTATGGGGTAATAT 57.987 47.619 4.53 0.00 37.43 1.28
1728 1847 2.647299 TGTGGGCCTATGGGGTAATATG 59.353 50.000 4.53 0.00 37.43 1.78
1776 1895 4.918810 ATGTTGGAACACAAAGTCCTTC 57.081 40.909 0.00 0.00 42.51 3.46
1798 1917 0.466555 TGACCGGTGGGAAGTTTTGG 60.467 55.000 14.63 0.00 36.97 3.28
1830 1950 2.984471 TGTGCGTCTAGTGAACGATTTC 59.016 45.455 6.64 0.00 0.00 2.17
1838 1958 4.923871 TCTAGTGAACGATTTCAGCACTTC 59.076 41.667 0.00 0.00 42.60 3.01
1898 2018 0.384309 TGCCTCGGATGTAGTAAGCG 59.616 55.000 0.00 0.00 0.00 4.68
1902 2022 2.100252 CCTCGGATGTAGTAAGCGGAAA 59.900 50.000 0.00 0.00 0.00 3.13
1904 2024 3.973657 TCGGATGTAGTAAGCGGAAATC 58.026 45.455 0.00 0.00 0.00 2.17
1905 2025 3.057734 CGGATGTAGTAAGCGGAAATCC 58.942 50.000 0.00 0.00 0.00 3.01
1921 2041 0.253160 ATCCTCTTGCACCCACCCTA 60.253 55.000 0.00 0.00 0.00 3.53
1954 2074 4.081586 GGTCAAGACTTTACACCCCTAGAG 60.082 50.000 2.13 0.00 0.00 2.43
1967 2087 2.012673 CCCTAGAGCACTGATTGTTGC 58.987 52.381 0.00 0.00 0.00 4.17
1992 2112 7.147811 GCTTATATGAGTAGCCTAGCCTATGTT 60.148 40.741 0.00 0.00 0.00 2.71
2058 2180 6.509418 TTATGAGTAGGATTTTTGGTGCAC 57.491 37.500 8.80 8.80 0.00 4.57
2078 2200 4.884164 GCACTTTGGATCCTAGCATACTTT 59.116 41.667 14.23 0.00 0.00 2.66
2082 2204 5.957771 TTGGATCCTAGCATACTTTCACT 57.042 39.130 14.23 0.00 0.00 3.41
2099 2221 1.136110 CACTTGTGTTGTTTGACCCCC 59.864 52.381 0.00 0.00 0.00 5.40
2106 2228 3.892588 GTGTTGTTTGACCCCCAGAATTA 59.107 43.478 0.00 0.00 0.00 1.40
2107 2229 3.892588 TGTTGTTTGACCCCCAGAATTAC 59.107 43.478 0.00 0.00 0.00 1.89
2155 2278 3.991773 CTGCAACTTTGGGATCAACATTG 59.008 43.478 0.00 0.00 34.00 2.82
2302 2425 5.904080 GTCGTTGATCTTGCAATGCTAATAC 59.096 40.000 6.82 0.00 35.32 1.89
2303 2426 5.817296 TCGTTGATCTTGCAATGCTAATACT 59.183 36.000 6.82 0.00 35.32 2.12
2307 2430 8.616076 GTTGATCTTGCAATGCTAATACTTAGT 58.384 33.333 6.82 0.00 35.66 2.24
2383 2506 2.032178 GGGCATAGCGAGTTTAAGCTTG 59.968 50.000 9.86 2.28 44.15 4.01
2386 2509 3.485877 GCATAGCGAGTTTAAGCTTGTGG 60.486 47.826 9.86 0.00 44.15 4.17
2399 2522 2.554032 AGCTTGTGGTGCTTAACATGAC 59.446 45.455 0.00 0.00 37.52 3.06
2506 2629 4.083003 TCGAGTTGATTGTAATGGGCAAAC 60.083 41.667 0.00 0.00 0.00 2.93
2510 2633 4.517952 TGATTGTAATGGGCAAACTGTG 57.482 40.909 0.00 0.00 0.00 3.66
2547 2670 2.332063 ATTAGCCGTCAATCCCTGTG 57.668 50.000 0.00 0.00 0.00 3.66
2553 2676 1.359848 CGTCAATCCCTGTGCAGTAC 58.640 55.000 0.00 0.00 0.00 2.73
2612 2735 5.357032 ACATGTGTATGCTTTTAGCTAACCC 59.643 40.000 5.45 0.00 42.97 4.11
2621 2744 1.188863 TTAGCTAACCCGACACCCTC 58.811 55.000 0.86 0.00 0.00 4.30
2727 2850 5.486526 CTGTTATTCTGACTCAAGCTCCTT 58.513 41.667 0.00 0.00 0.00 3.36
2763 2886 6.931838 TGACAATCTAAGTAACTTGTCGGAT 58.068 36.000 9.05 0.00 46.57 4.18
2807 2930 5.689383 TTTGCTAAGGTTTGCTACTCTTG 57.311 39.130 0.00 0.00 0.00 3.02
2936 3062 9.688592 CAGATTCTTCTTGAATTAGCAACTTTT 57.311 29.630 0.00 0.00 44.70 2.27
2944 3070 5.296748 TGAATTAGCAACTTTTTGAAGCCC 58.703 37.500 0.00 0.00 34.24 5.19
3050 3176 8.786826 TTTGATTATCTGAACTTAATGGACGT 57.213 30.769 0.00 0.00 0.00 4.34
3071 3197 9.562583 GGACGTAGATAGATTATTGATTCTGAC 57.437 37.037 0.00 0.00 0.00 3.51
3091 3217 6.379133 TCTGACCACATTTACCTATTCTACGT 59.621 38.462 0.00 0.00 0.00 3.57
3092 3218 6.938507 TGACCACATTTACCTATTCTACGTT 58.061 36.000 0.00 0.00 0.00 3.99
3093 3219 7.388437 TGACCACATTTACCTATTCTACGTTT 58.612 34.615 0.00 0.00 0.00 3.60
3094 3220 7.879160 TGACCACATTTACCTATTCTACGTTTT 59.121 33.333 0.00 0.00 0.00 2.43
3095 3221 8.260270 ACCACATTTACCTATTCTACGTTTTC 57.740 34.615 0.00 0.00 0.00 2.29
3096 3222 7.879160 ACCACATTTACCTATTCTACGTTTTCA 59.121 33.333 0.00 0.00 0.00 2.69
3097 3223 8.723311 CCACATTTACCTATTCTACGTTTTCAA 58.277 33.333 0.00 0.00 0.00 2.69
3098 3224 9.537848 CACATTTACCTATTCTACGTTTTCAAC 57.462 33.333 0.00 0.00 0.00 3.18
3145 3271 4.523083 TGGGCATAAAAGATGTAGACACC 58.477 43.478 0.00 0.00 0.00 4.16
3190 3316 6.093495 TCGCTTTGGAGTAATATTTTGGTCAG 59.907 38.462 0.00 0.00 0.00 3.51
3201 3327 2.284754 TTTGGTCAGTGGCTATGCAA 57.715 45.000 0.00 0.00 0.00 4.08
3215 3341 6.263168 GTGGCTATGCAACTTAGGATTATGTT 59.737 38.462 0.00 0.00 28.38 2.71
3216 3342 6.486657 TGGCTATGCAACTTAGGATTATGTTC 59.513 38.462 0.00 0.00 0.00 3.18
3217 3343 6.486657 GGCTATGCAACTTAGGATTATGTTCA 59.513 38.462 0.00 0.00 0.00 3.18
3221 3347 6.563422 TGCAACTTAGGATTATGTTCATTGC 58.437 36.000 0.00 0.00 0.00 3.56
3229 3355 4.261741 GGATTATGTTCATTGCGCCTTCAT 60.262 41.667 4.18 4.01 0.00 2.57
3232 3358 1.739466 TGTTCATTGCGCCTTCATCTC 59.261 47.619 4.18 0.00 0.00 2.75
3233 3359 1.739466 GTTCATTGCGCCTTCATCTCA 59.261 47.619 4.18 0.00 0.00 3.27
3295 3421 6.368791 TGTTCATAGTAGCTGCTTGTTTACTG 59.631 38.462 10.41 0.00 0.00 2.74
3363 3489 0.752054 TGAACCGAACCGTTAGTGGT 59.248 50.000 0.00 0.00 46.67 4.16
3364 3490 1.142474 GAACCGAACCGTTAGTGGTG 58.858 55.000 3.73 0.00 42.89 4.17
3365 3491 0.249996 AACCGAACCGTTAGTGGTGG 60.250 55.000 3.73 0.00 42.89 4.61
3435 3561 6.166982 AGGAAGTAAGTTGACATTGCTACTC 58.833 40.000 0.00 0.00 0.00 2.59
3439 3565 9.372369 GAAGTAAGTTGACATTGCTACTCTTAT 57.628 33.333 0.00 0.00 0.00 1.73
3446 3572 7.977789 TGACATTGCTACTCTTATGACAAAA 57.022 32.000 0.00 0.00 0.00 2.44
3455 3581 8.391106 GCTACTCTTATGACAAAATAACACTGG 58.609 37.037 0.00 0.00 0.00 4.00
3477 3603 5.009210 TGGTGTTTAATGGTGTGAAGCTTAC 59.991 40.000 0.00 0.00 0.00 2.34
3489 3615 6.371548 GGTGTGAAGCTTACTTGTGATATTCA 59.628 38.462 0.00 0.00 35.82 2.57
3549 3675 8.287439 TGGTTGTTTAAGAATCTTCAAGTCAA 57.713 30.769 0.00 0.00 0.00 3.18
3563 3689 3.189910 TCAAGTCAATCTTCACAGCATGC 59.810 43.478 10.51 10.51 34.67 4.06
3610 3736 2.223572 CGCTTCAACTGTTTTGCCTCTT 60.224 45.455 0.00 0.00 0.00 2.85
3612 3738 4.320494 CGCTTCAACTGTTTTGCCTCTTAT 60.320 41.667 0.00 0.00 0.00 1.73
3743 3869 8.766994 ATATATTGTAGTTTTTGGATGTGGCT 57.233 30.769 0.00 0.00 0.00 4.75
3844 3970 4.160329 TCAGTGTTATCAGGAAGAGTGGT 58.840 43.478 0.00 0.00 0.00 4.16
3845 3971 4.593206 TCAGTGTTATCAGGAAGAGTGGTT 59.407 41.667 0.00 0.00 0.00 3.67
3906 4032 6.133356 AAAGTAAACTTCAATCCCTTGTGGA 58.867 36.000 0.00 0.00 40.84 4.02
3941 4067 6.832384 AGGTTCTTATATACTGTTCTGTCGGA 59.168 38.462 0.00 0.00 0.00 4.55
3942 4068 7.506261 AGGTTCTTATATACTGTTCTGTCGGAT 59.494 37.037 0.00 0.00 0.00 4.18
3943 4069 8.790718 GGTTCTTATATACTGTTCTGTCGGATA 58.209 37.037 0.00 0.00 0.00 2.59
4009 4135 7.665559 GTCAGTTATATGCCCCAAGATTCAATA 59.334 37.037 0.00 0.00 0.00 1.90
4076 4202 3.937706 CTGTTGATTGGACTGAGGATGTC 59.062 47.826 0.00 0.00 0.00 3.06
4094 4220 5.237344 GGATGTCGAGTTTCCCAATTATCAG 59.763 44.000 0.00 0.00 0.00 2.90
4161 4287 3.433274 GTCATCGCAGTCACATTCTTTGA 59.567 43.478 0.00 0.00 0.00 2.69
4177 4303 0.178967 TTGATGCAGCAAGGGGACAA 60.179 50.000 14.49 0.00 0.00 3.18
4181 4307 1.108727 TGCAGCAAGGGGACAACAAG 61.109 55.000 0.00 0.00 0.00 3.16
4185 4311 1.528309 CAAGGGGACAACAAGCCGT 60.528 57.895 0.00 0.00 0.00 5.68
4268 4394 1.897802 GGACCAAAGTCTCCTCCGTTA 59.102 52.381 0.00 0.00 43.05 3.18
4473 4599 5.638530 TGGTGGTCCTAATATGCATGTAA 57.361 39.130 10.16 0.00 34.23 2.41
4550 4676 5.619981 GCACCTTAATCTACTGCCAAACTTG 60.620 44.000 0.00 0.00 0.00 3.16
4649 4775 1.216175 CTCCAACCATCCCACCATCAT 59.784 52.381 0.00 0.00 0.00 2.45
4880 5006 7.046652 CCAAGTACATGTCATCTGAAGAGATT 58.953 38.462 0.00 0.00 36.75 2.40
5205 5331 3.115390 TCCCTGGAGAAAGAACCTATGG 58.885 50.000 0.00 0.00 0.00 2.74
5351 5477 1.519455 CCTTGAAGGTCTAGCCGCG 60.519 63.158 2.25 0.00 43.70 6.46
5690 5816 3.396560 TGCAGTTGTCTGTTCATCTGAG 58.603 45.455 13.33 0.00 43.05 3.35
6002 6128 2.125106 CTACGTGCAAGCCTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
6023 6149 2.005537 CACAAACGAGCAGCAACGC 61.006 57.895 11.07 0.00 0.00 4.84
6078 6204 2.170166 CTGCCAGCAGTTTTAATCCCA 58.830 47.619 11.55 0.00 39.10 4.37
6165 6291 2.095263 CGCAATTGTCTTCGGAATGGTT 60.095 45.455 7.40 0.00 0.00 3.67
6168 6294 5.650543 GCAATTGTCTTCGGAATGGTTATT 58.349 37.500 7.40 0.00 0.00 1.40
6271 6401 5.625150 AGCCTTATTTCAGTCTGTGACTTT 58.375 37.500 0.00 0.00 41.37 2.66
6378 6508 5.397221 CCCACCTGATGATCACAAATAGACT 60.397 44.000 0.00 0.00 0.00 3.24
6404 6535 5.991606 TGGAGACATGTACTTATATTGCTGC 59.008 40.000 0.00 0.00 33.40 5.25
6426 6557 1.696336 ACTCTGTGCAGTGGATGAACT 59.304 47.619 6.28 0.00 38.44 3.01
6556 6687 2.356278 GGAGCATGGAAGGTGCCA 59.644 61.111 0.00 0.00 43.50 4.92
6848 6996 5.746307 ATACAATTGTATGTGCTGCTGAG 57.254 39.130 26.51 0.00 39.57 3.35
7084 7253 2.474816 GCGGATCATAACCTGACACTC 58.525 52.381 0.00 0.00 36.48 3.51
7085 7254 2.732366 CGGATCATAACCTGACACTCG 58.268 52.381 0.00 0.00 36.48 4.18
7086 7255 2.099263 CGGATCATAACCTGACACTCGT 59.901 50.000 0.00 0.00 36.48 4.18
7087 7256 3.707793 GGATCATAACCTGACACTCGTC 58.292 50.000 0.00 0.00 42.93 4.20
7088 7257 2.913777 TCATAACCTGACACTCGTCG 57.086 50.000 0.00 0.00 45.80 5.12
7089 7258 2.429478 TCATAACCTGACACTCGTCGA 58.571 47.619 0.00 0.00 45.80 4.20
7090 7259 2.418976 TCATAACCTGACACTCGTCGAG 59.581 50.000 20.57 20.57 45.80 4.04
7091 7260 2.174363 TAACCTGACACTCGTCGAGA 57.826 50.000 28.33 5.22 45.80 4.04
7092 7261 0.592148 AACCTGACACTCGTCGAGAC 59.408 55.000 28.33 17.67 45.80 3.36
7111 7280 1.374758 GTCGACTTCCAGGTGCAGG 60.375 63.158 8.70 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.185454 TCAAAATGATACTCCACGATGCTT 58.815 37.500 0.00 0.00 0.00 3.91
2 3 4.769688 TCAAAATGATACTCCACGATGCT 58.230 39.130 0.00 0.00 0.00 3.79
3 4 5.065218 AGTTCAAAATGATACTCCACGATGC 59.935 40.000 0.00 0.00 0.00 3.91
4 5 6.668541 AGTTCAAAATGATACTCCACGATG 57.331 37.500 0.00 0.00 0.00 3.84
5 6 8.786826 TTTAGTTCAAAATGATACTCCACGAT 57.213 30.769 0.00 0.00 0.00 3.73
6 7 8.500773 GTTTTAGTTCAAAATGATACTCCACGA 58.499 33.333 0.00 0.00 38.36 4.35
7 8 7.749126 GGTTTTAGTTCAAAATGATACTCCACG 59.251 37.037 0.00 0.00 38.36 4.94
8 9 8.573035 TGGTTTTAGTTCAAAATGATACTCCAC 58.427 33.333 0.00 0.00 38.36 4.02
9 10 8.573035 GTGGTTTTAGTTCAAAATGATACTCCA 58.427 33.333 0.00 0.00 38.36 3.86
10 11 7.749126 CGTGGTTTTAGTTCAAAATGATACTCC 59.251 37.037 0.00 0.00 38.36 3.85
11 12 7.749126 CCGTGGTTTTAGTTCAAAATGATACTC 59.251 37.037 0.00 0.00 38.36 2.59
12 13 7.229907 ACCGTGGTTTTAGTTCAAAATGATACT 59.770 33.333 0.00 0.00 38.36 2.12
13 14 7.364970 ACCGTGGTTTTAGTTCAAAATGATAC 58.635 34.615 0.00 0.00 38.36 2.24
14 15 7.513371 ACCGTGGTTTTAGTTCAAAATGATA 57.487 32.000 0.00 0.00 38.36 2.15
15 16 6.399639 ACCGTGGTTTTAGTTCAAAATGAT 57.600 33.333 0.00 0.00 38.36 2.45
16 17 5.838531 ACCGTGGTTTTAGTTCAAAATGA 57.161 34.783 0.00 0.00 38.36 2.57
17 18 5.916320 GGTACCGTGGTTTTAGTTCAAAATG 59.084 40.000 0.00 0.00 38.36 2.32
18 19 5.829391 AGGTACCGTGGTTTTAGTTCAAAAT 59.171 36.000 6.18 0.00 38.36 1.82
19 20 5.192176 AGGTACCGTGGTTTTAGTTCAAAA 58.808 37.500 6.18 0.00 33.66 2.44
20 21 4.779696 AGGTACCGTGGTTTTAGTTCAAA 58.220 39.130 6.18 0.00 0.00 2.69
21 22 4.420522 AGGTACCGTGGTTTTAGTTCAA 57.579 40.909 6.18 0.00 0.00 2.69
22 23 4.588528 AGTAGGTACCGTGGTTTTAGTTCA 59.411 41.667 6.18 0.00 0.00 3.18
23 24 5.139435 AGTAGGTACCGTGGTTTTAGTTC 57.861 43.478 6.18 0.00 0.00 3.01
24 25 5.551305 AAGTAGGTACCGTGGTTTTAGTT 57.449 39.130 6.18 0.00 0.00 2.24
25 26 5.551305 AAAGTAGGTACCGTGGTTTTAGT 57.449 39.130 6.18 0.00 0.00 2.24
26 27 7.961325 TTTAAAGTAGGTACCGTGGTTTTAG 57.039 36.000 6.18 0.00 0.00 1.85
27 28 7.042389 CGTTTTAAAGTAGGTACCGTGGTTTTA 60.042 37.037 6.18 6.21 0.00 1.52
28 29 6.238347 CGTTTTAAAGTAGGTACCGTGGTTTT 60.238 38.462 6.18 7.12 0.00 2.43
29 30 5.236263 CGTTTTAAAGTAGGTACCGTGGTTT 59.764 40.000 6.18 7.88 0.00 3.27
30 31 4.749598 CGTTTTAAAGTAGGTACCGTGGTT 59.250 41.667 6.18 2.83 0.00 3.67
31 32 4.306600 CGTTTTAAAGTAGGTACCGTGGT 58.693 43.478 6.18 0.00 0.00 4.16
32 33 3.679502 CCGTTTTAAAGTAGGTACCGTGG 59.320 47.826 6.18 0.00 0.00 4.94
33 34 4.555262 TCCGTTTTAAAGTAGGTACCGTG 58.445 43.478 6.18 0.00 0.00 4.94
34 35 4.321974 CCTCCGTTTTAAAGTAGGTACCGT 60.322 45.833 6.18 0.00 0.00 4.83
35 36 4.082245 TCCTCCGTTTTAAAGTAGGTACCG 60.082 45.833 6.18 0.00 0.00 4.02
36 37 5.405935 TCCTCCGTTTTAAAGTAGGTACC 57.594 43.478 2.73 2.73 0.00 3.34
37 38 6.459066 ACTTCCTCCGTTTTAAAGTAGGTAC 58.541 40.000 5.85 0.00 0.00 3.34
38 39 6.670695 ACTTCCTCCGTTTTAAAGTAGGTA 57.329 37.500 5.85 0.00 0.00 3.08
39 40 5.557576 ACTTCCTCCGTTTTAAAGTAGGT 57.442 39.130 5.85 0.00 0.00 3.08
40 41 6.930722 TGTTACTTCCTCCGTTTTAAAGTAGG 59.069 38.462 0.00 0.00 34.81 3.18
41 42 7.951530 TGTTACTTCCTCCGTTTTAAAGTAG 57.048 36.000 0.00 0.00 34.81 2.57
42 43 8.907222 AATGTTACTTCCTCCGTTTTAAAGTA 57.093 30.769 0.00 0.00 32.71 2.24
59 60 9.030301 GTGCTTTGTTTACATCAAAATGTTACT 57.970 29.630 0.00 0.00 43.74 2.24
71 72 3.027412 TGGTGTGGTGCTTTGTTTACAT 58.973 40.909 0.00 0.00 0.00 2.29
138 143 1.962100 GGTACTGTATTCGAGGGAGGG 59.038 57.143 0.00 0.00 0.00 4.30
140 145 2.885894 GGAGGTACTGTATTCGAGGGAG 59.114 54.545 0.00 0.00 41.55 4.30
165 178 0.899717 CTTGGTTGGTGGTGATGGGG 60.900 60.000 0.00 0.00 0.00 4.96
184 197 4.093556 GTGGATTTAGCACTCTGTTAGCAC 59.906 45.833 0.00 0.00 0.00 4.40
207 220 3.555966 GAGTAATGATGGTCTTTGGGGG 58.444 50.000 0.00 0.00 0.00 5.40
212 225 5.661056 TGTCTCGAGTAATGATGGTCTTT 57.339 39.130 13.13 0.00 0.00 2.52
227 240 9.726438 TCTTCTATGATCATATACTTGTCTCGA 57.274 33.333 15.71 3.28 0.00 4.04
228 241 9.986833 CTCTTCTATGATCATATACTTGTCTCG 57.013 37.037 15.71 0.97 0.00 4.04
312 326 6.022315 TGGATGGGACTTTGAAATAATTGGT 58.978 36.000 0.00 0.00 0.00 3.67
318 332 7.366847 TGTTTTTGGATGGGACTTTGAAATA 57.633 32.000 0.00 0.00 0.00 1.40
332 346 3.025322 TGTGGTGTCCTGTTTTTGGAT 57.975 42.857 0.00 0.00 35.87 3.41
346 360 5.128499 ACCATCTCTCTCTTCTTATGTGGTG 59.872 44.000 0.00 0.00 35.13 4.17
356 370 5.913137 TCTTTGAGACCATCTCTCTCTTC 57.087 43.478 7.33 0.00 45.38 2.87
359 373 6.279513 TCTTTCTTTGAGACCATCTCTCTC 57.720 41.667 7.33 0.00 45.38 3.20
361 375 7.158021 TCTTTCTTTCTTTGAGACCATCTCTC 58.842 38.462 7.33 0.00 43.73 3.20
362 376 7.016072 TCTCTTTCTTTCTTTGAGACCATCTCT 59.984 37.037 7.33 0.00 43.73 3.10
363 377 7.158021 TCTCTTTCTTTCTTTGAGACCATCTC 58.842 38.462 0.00 0.00 43.65 2.75
365 379 7.158021 TCTCTCTTTCTTTCTTTGAGACCATC 58.842 38.462 0.00 0.00 31.52 3.51
366 380 7.016072 TCTCTCTCTTTCTTTCTTTGAGACCAT 59.984 37.037 0.00 0.00 31.52 3.55
367 381 6.325028 TCTCTCTCTTTCTTTCTTTGAGACCA 59.675 38.462 0.00 0.00 31.52 4.02
368 382 6.754193 TCTCTCTCTTTCTTTCTTTGAGACC 58.246 40.000 0.00 0.00 31.52 3.85
369 383 7.657336 TCTCTCTCTCTTTCTTTCTTTGAGAC 58.343 38.462 0.00 0.00 31.52 3.36
370 384 7.831691 TCTCTCTCTCTTTCTTTCTTTGAGA 57.168 36.000 0.00 0.00 33.45 3.27
371 385 7.599998 CCTTCTCTCTCTCTTTCTTTCTTTGAG 59.400 40.741 0.00 0.00 0.00 3.02
372 386 7.441017 CCTTCTCTCTCTCTTTCTTTCTTTGA 58.559 38.462 0.00 0.00 0.00 2.69
373 387 6.650390 CCCTTCTCTCTCTCTTTCTTTCTTTG 59.350 42.308 0.00 0.00 0.00 2.77
374 388 6.239858 CCCCTTCTCTCTCTCTTTCTTTCTTT 60.240 42.308 0.00 0.00 0.00 2.52
380 394 3.845109 ACCCCTTCTCTCTCTCTTTCT 57.155 47.619 0.00 0.00 0.00 2.52
381 395 5.717654 TCTTTACCCCTTCTCTCTCTCTTTC 59.282 44.000 0.00 0.00 0.00 2.62
388 402 6.535540 GTTTTCTTCTTTACCCCTTCTCTCT 58.464 40.000 0.00 0.00 0.00 3.10
389 403 5.408909 CGTTTTCTTCTTTACCCCTTCTCTC 59.591 44.000 0.00 0.00 0.00 3.20
395 409 3.217681 TGCGTTTTCTTCTTTACCCCT 57.782 42.857 0.00 0.00 0.00 4.79
396 410 5.632244 TTATGCGTTTTCTTCTTTACCCC 57.368 39.130 0.00 0.00 0.00 4.95
397 411 6.905578 TCTTTATGCGTTTTCTTCTTTACCC 58.094 36.000 0.00 0.00 0.00 3.69
398 412 8.791355 TTTCTTTATGCGTTTTCTTCTTTACC 57.209 30.769 0.00 0.00 0.00 2.85
432 449 6.418226 CGTGGCTTGATTGTTACTCTATCTAC 59.582 42.308 0.00 0.00 31.45 2.59
434 451 5.352284 CGTGGCTTGATTGTTACTCTATCT 58.648 41.667 0.00 0.00 31.45 1.98
438 455 2.076863 GCGTGGCTTGATTGTTACTCT 58.923 47.619 0.00 0.00 0.00 3.24
465 482 2.158325 AGATAAGAGAGGCAGAGGGAGG 60.158 54.545 0.00 0.00 0.00 4.30
474 492 4.577834 AAGAAGCGTAGATAAGAGAGGC 57.422 45.455 0.00 0.00 0.00 4.70
501 519 3.643237 AGAAACGGTAGATGATGGGAGA 58.357 45.455 0.00 0.00 0.00 3.71
523 541 1.988107 TCAAGCAGGGGAAGTGAGATT 59.012 47.619 0.00 0.00 0.00 2.40
548 566 0.175302 CCTTGCAAGGCACACAACAA 59.825 50.000 31.70 0.00 38.71 2.83
611 670 1.750682 GCGGGATTAGGGCTTTCACAT 60.751 52.381 0.00 0.00 0.00 3.21
612 671 0.393808 GCGGGATTAGGGCTTTCACA 60.394 55.000 0.00 0.00 0.00 3.58
619 678 2.203351 CTTGGGCGGGATTAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
637 699 0.255033 ATAAACGCCTCCTTGTCCCC 59.745 55.000 0.00 0.00 0.00 4.81
642 704 4.022329 AGTCCAAAAATAAACGCCTCCTTG 60.022 41.667 0.00 0.00 0.00 3.61
647 709 2.890945 AGCAGTCCAAAAATAAACGCCT 59.109 40.909 0.00 0.00 0.00 5.52
660 722 3.995705 GCATGCAAATTTAAAGCAGTCCA 59.004 39.130 14.21 0.00 42.14 4.02
663 725 3.008266 AGGGCATGCAAATTTAAAGCAGT 59.992 39.130 21.36 0.00 42.14 4.40
671 733 5.648960 CCAAAGAAATAGGGCATGCAAATTT 59.351 36.000 21.36 19.57 0.00 1.82
680 742 1.357420 TGCTCCCAAAGAAATAGGGCA 59.643 47.619 0.00 0.00 42.52 5.36
742 808 9.950496 CTCCTGCCTATAAATAAATGAGTACAT 57.050 33.333 0.00 0.00 38.50 2.29
743 809 9.154632 TCTCCTGCCTATAAATAAATGAGTACA 57.845 33.333 0.00 0.00 0.00 2.90
744 810 9.646427 CTCTCCTGCCTATAAATAAATGAGTAC 57.354 37.037 0.00 0.00 0.00 2.73
745 811 9.601810 TCTCTCCTGCCTATAAATAAATGAGTA 57.398 33.333 0.00 0.00 0.00 2.59
746 812 8.497910 TCTCTCCTGCCTATAAATAAATGAGT 57.502 34.615 0.00 0.00 0.00 3.41
749 815 9.784531 TTTCTCTCTCCTGCCTATAAATAAATG 57.215 33.333 0.00 0.00 0.00 2.32
762 828 2.168313 CCCTTCTCTTTCTCTCTCCTGC 59.832 54.545 0.00 0.00 0.00 4.85
763 829 3.701040 CTCCCTTCTCTTTCTCTCTCCTG 59.299 52.174 0.00 0.00 0.00 3.86
779 845 0.800239 TTTCTCTCTCCCCCTCCCTT 59.200 55.000 0.00 0.00 0.00 3.95
784 851 1.290732 CTCCTCTTTCTCTCTCCCCCT 59.709 57.143 0.00 0.00 0.00 4.79
786 853 1.691163 CCCTCCTCTTTCTCTCTCCCC 60.691 61.905 0.00 0.00 0.00 4.81
788 855 2.666317 CTCCCTCCTCTTTCTCTCTCC 58.334 57.143 0.00 0.00 0.00 3.71
809 876 0.756070 CCTCGGTCCTACTTCTCCCC 60.756 65.000 0.00 0.00 0.00 4.81
810 877 0.756070 CCCTCGGTCCTACTTCTCCC 60.756 65.000 0.00 0.00 0.00 4.30
812 879 1.682740 CTCCCTCGGTCCTACTTCTC 58.317 60.000 0.00 0.00 0.00 2.87
815 882 0.252103 TTGCTCCCTCGGTCCTACTT 60.252 55.000 0.00 0.00 0.00 2.24
818 885 1.614241 GCTTTGCTCCCTCGGTCCTA 61.614 60.000 0.00 0.00 0.00 2.94
819 886 2.960688 GCTTTGCTCCCTCGGTCCT 61.961 63.158 0.00 0.00 0.00 3.85
820 887 2.436824 GCTTTGCTCCCTCGGTCC 60.437 66.667 0.00 0.00 0.00 4.46
822 889 2.032681 GTGCTTTGCTCCCTCGGT 59.967 61.111 0.00 0.00 0.00 4.69
823 890 2.037136 CAGTGCTTTGCTCCCTCGG 61.037 63.158 0.00 0.00 0.00 4.63
824 891 1.004560 TCAGTGCTTTGCTCCCTCG 60.005 57.895 0.00 0.00 0.00 4.63
825 892 0.676151 CCTCAGTGCTTTGCTCCCTC 60.676 60.000 0.00 0.00 0.00 4.30
828 895 2.338785 GGCCTCAGTGCTTTGCTCC 61.339 63.158 0.00 0.00 0.00 4.70
829 896 2.684843 CGGCCTCAGTGCTTTGCTC 61.685 63.158 0.00 0.00 0.00 4.26
830 897 2.670934 CGGCCTCAGTGCTTTGCT 60.671 61.111 0.00 0.00 0.00 3.91
831 898 4.410743 GCGGCCTCAGTGCTTTGC 62.411 66.667 0.00 0.00 0.00 3.68
864 931 2.434359 CGTGCGAGGGAAGGGAAC 60.434 66.667 0.00 0.00 0.00 3.62
876 943 4.962122 GTTGTGCCTGTGCGTGCG 62.962 66.667 0.00 0.00 41.78 5.34
877 944 3.527360 GAGTTGTGCCTGTGCGTGC 62.527 63.158 0.00 0.00 41.78 5.34
878 945 1.835483 GAGAGTTGTGCCTGTGCGTG 61.835 60.000 0.00 0.00 41.78 5.34
879 946 1.595382 GAGAGTTGTGCCTGTGCGT 60.595 57.895 0.00 0.00 41.78 5.24
880 947 1.563435 CTGAGAGTTGTGCCTGTGCG 61.563 60.000 0.00 0.00 41.78 5.34
881 948 0.250038 TCTGAGAGTTGTGCCTGTGC 60.250 55.000 0.00 0.00 38.26 4.57
882 949 2.344950 GATCTGAGAGTTGTGCCTGTG 58.655 52.381 0.00 0.00 0.00 3.66
883 950 1.277557 GGATCTGAGAGTTGTGCCTGT 59.722 52.381 0.00 0.00 0.00 4.00
884 951 1.738365 CGGATCTGAGAGTTGTGCCTG 60.738 57.143 0.00 0.00 0.00 4.85
885 952 0.534412 CGGATCTGAGAGTTGTGCCT 59.466 55.000 0.00 0.00 0.00 4.75
886 953 0.532573 TCGGATCTGAGAGTTGTGCC 59.467 55.000 0.00 0.00 0.00 5.01
887 954 2.370281 TTCGGATCTGAGAGTTGTGC 57.630 50.000 4.04 0.00 0.00 4.57
888 955 2.670414 GCTTTCGGATCTGAGAGTTGTG 59.330 50.000 20.13 0.00 0.00 3.33
889 956 2.354203 GGCTTTCGGATCTGAGAGTTGT 60.354 50.000 20.13 0.00 0.00 3.32
892 959 0.827368 GGGCTTTCGGATCTGAGAGT 59.173 55.000 20.13 0.00 0.00 3.24
904 971 0.375106 CGCGATTCTCTTGGGCTTTC 59.625 55.000 0.00 0.00 0.00 2.62
911 978 2.233654 CGAGGGCGCGATTCTCTTG 61.234 63.158 12.10 0.00 0.00 3.02
932 1011 4.608933 CGTCGCGCATCTAAGCTA 57.391 55.556 8.75 0.00 0.00 3.32
962 1041 2.743928 AGCAACAGTAGCAGCGGC 60.744 61.111 0.00 0.00 41.61 6.53
963 1042 3.031964 GCAGCAACAGTAGCAGCGG 62.032 63.158 0.00 0.00 34.87 5.52
964 1043 2.477845 GCAGCAACAGTAGCAGCG 59.522 61.111 0.00 0.00 34.87 5.18
977 1056 1.799383 GCAGAAACCTAGCAGCAGC 59.201 57.895 0.00 0.00 42.56 5.25
1041 1120 2.683933 GCGGTGGAGGAGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
1077 1156 0.790207 CACCGAACTCATTCACCACG 59.210 55.000 0.00 0.00 34.14 4.94
1086 1165 0.028770 CAAAAAGCGCACCGAACTCA 59.971 50.000 11.47 0.00 0.00 3.41
1089 1168 3.221008 GCAAAAAGCGCACCGAAC 58.779 55.556 11.47 0.00 0.00 3.95
1100 1179 0.466124 CCCAGGAAAACCGGCAAAAA 59.534 50.000 0.00 0.00 0.00 1.94
1107 1186 1.170290 AAACGCTCCCAGGAAAACCG 61.170 55.000 0.00 0.00 0.00 4.44
1110 1189 2.159382 GATCAAACGCTCCCAGGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
1133 1212 2.903350 ACCAACCAAACCGGCGAC 60.903 61.111 9.30 0.00 39.03 5.19
1215 1314 2.534903 GGAGTAATTCGCCGCTGGC 61.535 63.158 9.20 9.20 46.75 4.85
1218 1317 0.249398 AACTGGAGTAATTCGCCGCT 59.751 50.000 0.00 0.00 38.89 5.52
1219 1318 0.373716 CAACTGGAGTAATTCGCCGC 59.626 55.000 0.00 0.00 38.89 6.53
1220 1319 1.006832 CCAACTGGAGTAATTCGCCG 58.993 55.000 0.00 0.00 38.89 6.46
1221 1320 1.379527 CCCAACTGGAGTAATTCGCC 58.620 55.000 0.00 0.00 37.39 5.54
1223 1322 1.065418 AGGCCCAACTGGAGTAATTCG 60.065 52.381 0.00 0.00 37.39 3.34
1224 1323 2.644676 GAGGCCCAACTGGAGTAATTC 58.355 52.381 0.00 0.00 37.39 2.17
1225 1324 1.285078 GGAGGCCCAACTGGAGTAATT 59.715 52.381 0.00 0.00 37.39 1.40
1227 1326 1.205460 GGGAGGCCCAACTGGAGTAA 61.205 60.000 0.00 0.00 44.65 2.24
1229 1328 2.936032 GGGAGGCCCAACTGGAGT 60.936 66.667 0.00 0.00 44.65 3.85
1230 1329 4.101448 CGGGAGGCCCAACTGGAG 62.101 72.222 0.00 0.00 45.83 3.86
1247 1346 4.821589 CTTGAGCTCGCCGGGTCC 62.822 72.222 9.64 0.00 33.34 4.46
1248 1347 3.760035 TCTTGAGCTCGCCGGGTC 61.760 66.667 9.64 0.00 0.00 4.46
1261 1360 5.050091 AGCGAACAAACTAGAACATGTCTTG 60.050 40.000 0.00 2.24 37.84 3.02
1272 1371 4.452455 AGACCAATCAAGCGAACAAACTAG 59.548 41.667 0.00 0.00 0.00 2.57
1340 1459 5.125097 AGCAAGGAAGCACAGATCAAATTAG 59.875 40.000 0.00 0.00 36.85 1.73
1354 1473 2.035530 ACTATCTGCAGCAAGGAAGC 57.964 50.000 9.47 0.00 0.00 3.86
1517 1636 1.134250 GGAATCAGCACCTCTTCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
1534 1653 0.325016 GGACTAGGAAGGTCCCGGAA 60.325 60.000 0.73 0.00 45.31 4.30
1540 1659 0.903236 GGGTGTGGACTAGGAAGGTC 59.097 60.000 0.00 0.00 0.00 3.85
1581 1700 1.476085 CACAACACAAACAAGGCCAGA 59.524 47.619 5.01 0.00 0.00 3.86
1603 1722 1.154150 GCACGCATGAGAGCCAAAC 60.154 57.895 7.61 0.00 0.00 2.93
1609 1728 0.935898 GGATCAAGCACGCATGAGAG 59.064 55.000 2.50 0.00 0.00 3.20
1633 1752 2.080062 CAAAAACCGCACGCCATCG 61.080 57.895 0.00 0.00 42.43 3.84
1646 1765 7.199766 CACTACTAACATCCAACTTGCAAAAA 58.800 34.615 0.00 0.00 0.00 1.94
1655 1774 3.518303 ACCCTCCACTACTAACATCCAAC 59.482 47.826 0.00 0.00 0.00 3.77
1675 1794 0.539986 TGATTCCTCCCGCACTAACC 59.460 55.000 0.00 0.00 0.00 2.85
1684 1803 6.836007 ACAAGGATTTATTCTTGATTCCTCCC 59.164 38.462 15.91 0.00 41.94 4.30
1695 1814 5.388654 CATAGGCCCACAAGGATTTATTCT 58.611 41.667 0.00 0.00 38.24 2.40
1709 1828 2.647299 CACATATTACCCCATAGGCCCA 59.353 50.000 0.00 0.00 40.58 5.36
1723 1842 6.017211 TGATCCTCATTTCCACCACATATT 57.983 37.500 0.00 0.00 0.00 1.28
1724 1843 5.651612 TGATCCTCATTTCCACCACATAT 57.348 39.130 0.00 0.00 0.00 1.78
1725 1844 5.449297 TTGATCCTCATTTCCACCACATA 57.551 39.130 0.00 0.00 0.00 2.29
1726 1845 4.320546 TTGATCCTCATTTCCACCACAT 57.679 40.909 0.00 0.00 0.00 3.21
1727 1846 3.805066 TTGATCCTCATTTCCACCACA 57.195 42.857 0.00 0.00 0.00 4.17
1728 1847 4.706476 TGAATTGATCCTCATTTCCACCAC 59.294 41.667 8.48 0.00 36.47 4.16
1755 1874 3.315191 CGAAGGACTTTGTGTTCCAACAT 59.685 43.478 0.00 0.00 41.59 2.71
1792 1911 4.142469 ACGCACATTAAGATAGCCCAAAAC 60.142 41.667 0.00 0.00 0.00 2.43
1798 1917 4.681942 CACTAGACGCACATTAAGATAGCC 59.318 45.833 0.00 0.00 0.00 3.93
1830 1950 2.615447 TGTGCTCTGAAAAGAAGTGCTG 59.385 45.455 0.00 0.00 35.65 4.41
1838 1958 5.254339 AGGAACTTTTGTGCTCTGAAAAG 57.746 39.130 8.83 8.83 42.45 2.27
1898 2018 1.177401 GTGGGTGCAAGAGGATTTCC 58.823 55.000 0.00 0.00 0.00 3.13
1902 2022 0.253160 TAGGGTGGGTGCAAGAGGAT 60.253 55.000 0.00 0.00 0.00 3.24
1904 2024 0.625849 AATAGGGTGGGTGCAAGAGG 59.374 55.000 0.00 0.00 0.00 3.69
1905 2025 2.505819 AGTAATAGGGTGGGTGCAAGAG 59.494 50.000 0.00 0.00 0.00 2.85
1921 2041 7.876582 GGTGTAAAGTCTTGACCAGTTAGTAAT 59.123 37.037 0.00 0.00 0.00 1.89
1954 2074 6.369059 ACTCATATAAGCAACAATCAGTGC 57.631 37.500 0.00 0.00 0.00 4.40
1967 2087 7.889873 ACATAGGCTAGGCTACTCATATAAG 57.110 40.000 26.75 5.25 0.00 1.73
2058 2180 6.352516 AGTGAAAGTATGCTAGGATCCAAAG 58.647 40.000 15.82 12.03 0.00 2.77
2078 2200 2.096248 GGGGTCAAACAACACAAGTGA 58.904 47.619 7.28 0.00 0.00 3.41
2082 2204 1.006043 TCTGGGGGTCAAACAACACAA 59.994 47.619 0.00 0.00 0.00 3.33
2126 2249 6.024552 TGATCCCAAAGTTGCAGAAATAAC 57.975 37.500 0.00 0.00 0.00 1.89
2155 2278 6.801862 GGTTATTTTCACACAGCAGTATTGAC 59.198 38.462 0.00 0.00 0.00 3.18
2263 2386 1.157257 ACGACGCAATGTTGACTGCA 61.157 50.000 0.00 0.00 38.52 4.41
2307 2430 9.720769 CAAACTTAGTCCATAGGAGACTTAAAA 57.279 33.333 0.00 0.00 41.87 1.52
2325 2448 5.873179 TGAATCTTAACGGCCAAACTTAG 57.127 39.130 2.24 0.00 0.00 2.18
2383 2506 4.519540 AATTGGTCATGTTAAGCACCAC 57.480 40.909 1.36 0.00 38.68 4.16
2386 2509 7.865385 TCACTAAAAATTGGTCATGTTAAGCAC 59.135 33.333 0.00 0.00 0.00 4.40
2399 2522 6.260936 ACAGTCAGTGAGTCACTAAAAATTGG 59.739 38.462 25.04 10.65 43.43 3.16
2510 2633 7.545965 ACGGCTAATTACTCTATCATTACATGC 59.454 37.037 0.00 0.00 0.00 4.06
2515 2638 9.856488 GATTGACGGCTAATTACTCTATCATTA 57.144 33.333 0.00 0.00 0.00 1.90
2516 2639 7.819900 GGATTGACGGCTAATTACTCTATCATT 59.180 37.037 0.00 0.00 0.00 2.57
2517 2640 7.324178 GGATTGACGGCTAATTACTCTATCAT 58.676 38.462 0.00 0.00 0.00 2.45
2518 2641 6.295123 GGGATTGACGGCTAATTACTCTATCA 60.295 42.308 0.00 0.00 0.00 2.15
2519 2642 6.071278 AGGGATTGACGGCTAATTACTCTATC 60.071 42.308 0.00 0.00 0.00 2.08
2520 2643 5.780793 AGGGATTGACGGCTAATTACTCTAT 59.219 40.000 0.00 0.00 0.00 1.98
2523 2646 4.058817 CAGGGATTGACGGCTAATTACTC 58.941 47.826 0.00 0.00 0.00 2.59
2547 2670 7.328493 ACAAACTTTGTTTCTGAAAAGTACTGC 59.672 33.333 4.09 0.00 43.92 4.40
2553 2676 7.224557 CCCCATACAAACTTTGTTTCTGAAAAG 59.775 37.037 12.35 1.76 42.22 2.27
2612 2735 0.465705 ATGGTATGCAGAGGGTGTCG 59.534 55.000 0.00 0.00 0.00 4.35
2621 2744 6.183360 GGAAGCATTTTGAAAATGGTATGCAG 60.183 38.462 28.66 6.00 40.49 4.41
2807 2930 4.378874 GCTGAAACACTGGAGCAATAAGTC 60.379 45.833 0.00 0.00 0.00 3.01
3046 3172 9.562583 GGTCAGAATCAATAATCTATCTACGTC 57.437 37.037 0.00 0.00 0.00 4.34
3071 3197 8.259049 TGAAAACGTAGAATAGGTAAATGTGG 57.741 34.615 0.00 0.00 38.98 4.17
3091 3217 6.535508 CCTTTCATGGGTAAAAACGTTGAAAA 59.464 34.615 0.00 0.00 0.00 2.29
3092 3218 6.043411 CCTTTCATGGGTAAAAACGTTGAAA 58.957 36.000 0.00 3.82 0.00 2.69
3093 3219 5.593010 CCTTTCATGGGTAAAAACGTTGAA 58.407 37.500 0.00 0.00 0.00 2.69
3094 3220 4.500035 GCCTTTCATGGGTAAAAACGTTGA 60.500 41.667 0.00 0.00 0.00 3.18
3095 3221 3.738791 GCCTTTCATGGGTAAAAACGTTG 59.261 43.478 0.00 0.00 0.00 4.10
3096 3222 3.243941 GGCCTTTCATGGGTAAAAACGTT 60.244 43.478 0.00 0.00 0.00 3.99
3097 3223 2.297880 GGCCTTTCATGGGTAAAAACGT 59.702 45.455 0.00 0.00 0.00 3.99
3098 3224 2.353307 GGGCCTTTCATGGGTAAAAACG 60.353 50.000 0.84 0.00 0.00 3.60
3099 3225 2.903784 AGGGCCTTTCATGGGTAAAAAC 59.096 45.455 0.00 0.00 0.00 2.43
3126 3252 5.109903 ACTCGGTGTCTACATCTTTTATGC 58.890 41.667 0.00 0.00 0.00 3.14
3190 3316 5.765182 ACATAATCCTAAGTTGCATAGCCAC 59.235 40.000 0.00 0.00 0.00 5.01
3201 3327 4.275936 GGCGCAATGAACATAATCCTAAGT 59.724 41.667 10.83 0.00 0.00 2.24
3215 3341 1.065926 ACTGAGATGAAGGCGCAATGA 60.066 47.619 10.83 0.00 0.00 2.57
3216 3342 1.329906 GACTGAGATGAAGGCGCAATG 59.670 52.381 10.83 0.00 0.00 2.82
3217 3343 1.209019 AGACTGAGATGAAGGCGCAAT 59.791 47.619 10.83 0.00 0.00 3.56
3221 3347 2.693069 ACAAAGACTGAGATGAAGGCG 58.307 47.619 0.00 0.00 0.00 5.52
3229 3355 9.832445 AAGTATTAAGTCAAACAAAGACTGAGA 57.168 29.630 0.00 0.00 45.11 3.27
3259 3385 5.814188 AGCTACTATGAACACACACATCATG 59.186 40.000 0.00 0.00 35.53 3.07
3266 3392 3.961480 AGCAGCTACTATGAACACACA 57.039 42.857 0.00 0.00 0.00 3.72
3267 3393 3.997021 ACAAGCAGCTACTATGAACACAC 59.003 43.478 0.00 0.00 0.00 3.82
3295 3421 5.236478 TGAGTGCAAGCTAAGAAACAGTAAC 59.764 40.000 0.00 0.00 0.00 2.50
3363 3489 0.036164 CACCAGGATTCCGTGTTCCA 59.964 55.000 0.00 0.00 34.27 3.53
3364 3490 0.036306 ACACCAGGATTCCGTGTTCC 59.964 55.000 9.75 0.00 0.00 3.62
3365 3491 1.892209 AACACCAGGATTCCGTGTTC 58.108 50.000 18.12 0.00 33.62 3.18
3455 3581 6.313744 AGTAAGCTTCACACCATTAAACAC 57.686 37.500 0.00 0.00 0.00 3.32
3464 3590 6.371548 TGAATATCACAAGTAAGCTTCACACC 59.628 38.462 0.00 0.00 31.49 4.16
3489 3615 7.172875 GCATCATGTTTCATAGAGAGCAATAGT 59.827 37.037 0.00 0.00 0.00 2.12
3549 3675 3.271729 CAGAAGAGCATGCTGTGAAGAT 58.728 45.455 28.27 5.08 0.00 2.40
3563 3689 9.294030 GACAAAAATAAATATGGTGCAGAAGAG 57.706 33.333 0.00 0.00 0.00 2.85
3632 3758 7.459795 TGTATAGCATGTCAAAAATCCACAA 57.540 32.000 0.00 0.00 0.00 3.33
3634 3760 7.706159 TGATGTATAGCATGTCAAAAATCCAC 58.294 34.615 0.00 0.00 38.06 4.02
3743 3869 3.708890 CACATGCTGAGCTTTCAACAAA 58.291 40.909 5.83 0.00 0.00 2.83
3807 3933 9.460019 TGATAACACTGATGACATTAAATTCCA 57.540 29.630 0.00 0.00 0.00 3.53
3809 3935 9.941664 CCTGATAACACTGATGACATTAAATTC 57.058 33.333 0.00 0.00 0.00 2.17
3822 3948 4.160329 ACCACTCTTCCTGATAACACTGA 58.840 43.478 0.00 0.00 0.00 3.41
3827 3953 5.046520 ACACCTAACCACTCTTCCTGATAAC 60.047 44.000 0.00 0.00 0.00 1.89
3844 3970 7.691213 TCCAACCAATAAATACAGACACCTAA 58.309 34.615 0.00 0.00 0.00 2.69
3845 3971 7.260387 TCCAACCAATAAATACAGACACCTA 57.740 36.000 0.00 0.00 0.00 3.08
3882 4008 6.133356 TCCACAAGGGATTGAAGTTTACTTT 58.867 36.000 0.00 0.00 42.15 2.66
3980 4106 5.450818 TCTTGGGGCATATAACTGACTTT 57.549 39.130 0.00 0.00 0.00 2.66
3987 4113 8.353423 ACATATTGAATCTTGGGGCATATAAC 57.647 34.615 0.00 0.00 0.00 1.89
3990 4116 8.172741 AGTAACATATTGAATCTTGGGGCATAT 58.827 33.333 0.00 0.00 0.00 1.78
4076 4202 9.672673 AATATATCCTGATAATTGGGAAACTCG 57.327 33.333 0.00 0.00 32.53 4.18
4145 4271 3.499048 CTGCATCAAAGAATGTGACTGC 58.501 45.455 0.00 0.00 33.28 4.40
4161 4287 0.469705 TTGTTGTCCCCTTGCTGCAT 60.470 50.000 1.84 0.00 0.00 3.96
4177 4303 2.228138 TGTTCGACTTAACGGCTTGT 57.772 45.000 0.00 0.00 31.76 3.16
4181 4307 2.347755 GGAAGATGTTCGACTTAACGGC 59.652 50.000 0.00 0.00 32.92 5.68
4185 4311 6.605995 TGAGGATAGGAAGATGTTCGACTTAA 59.394 38.462 0.00 0.00 32.92 1.85
4343 4469 3.209410 CATCTGTATCCCAGCTCCAAAC 58.791 50.000 0.00 0.00 41.25 2.93
4436 4562 1.155859 ACCAAAGGGCATGCTTCCA 59.844 52.632 18.92 0.00 37.90 3.53
4473 4599 4.250464 CAGTCATTTTGCATTGGATTGCT 58.750 39.130 0.00 0.00 43.18 3.91
4550 4676 5.957796 CGGAAGCGATATTTGTTTCTGTAAC 59.042 40.000 0.00 0.00 37.26 2.50
4649 4775 7.035985 AGGTGGGGTGGTAAATTTAGGTAATTA 60.036 37.037 0.00 0.00 35.39 1.40
4880 5006 6.045318 GTGCTGCATTCTTAGAATAGACTCA 58.955 40.000 5.27 0.56 0.00 3.41
4931 5057 8.950961 CAAGCTTGATGATAATAATCAACAACG 58.049 33.333 22.31 5.69 44.96 4.10
5205 5331 1.078848 CAGTGACCCTGGCTGCTAC 60.079 63.158 0.00 0.00 37.54 3.58
5690 5816 2.047179 GGACGGAGAGGTGGTTGC 60.047 66.667 0.00 0.00 0.00 4.17
6002 6128 0.592247 GTTGCTGCTCGTTTGTGTGG 60.592 55.000 0.00 0.00 0.00 4.17
6023 6149 1.533338 GCGAAATCAAGCAGCATCTGG 60.533 52.381 0.00 0.00 31.21 3.86
6078 6204 2.603473 TCCACCGCTAGCACCAGT 60.603 61.111 16.45 3.12 0.00 4.00
6168 6294 8.066612 TCATGCATGTCTTCGGATATATAAGA 57.933 34.615 25.43 0.00 0.00 2.10
6378 6508 6.986231 CAGCAATATAAGTACATGTCTCCACA 59.014 38.462 0.00 0.00 36.78 4.17
6404 6535 2.174363 TCATCCACTGCACAGAGTTG 57.826 50.000 4.31 1.70 0.00 3.16
6426 6557 4.103103 CGACGAGCGAGCTGACCA 62.103 66.667 0.84 0.00 44.57 4.02
6556 6687 3.041946 AGACTCCACACTTGACTCCTTT 58.958 45.455 0.00 0.00 0.00 3.11
6663 6796 7.962373 CACATCTATAAAATGTTGCAACGAAGA 59.038 33.333 23.79 16.70 35.19 2.87
6838 6986 3.854666 TCTATCTTTGACTCAGCAGCAC 58.145 45.455 0.00 0.00 0.00 4.40
6894 7061 1.576421 GTGGCCTCTGTTTTGCTCG 59.424 57.895 3.32 0.00 0.00 5.03
6903 7070 4.087892 CGGACAGGGTGGCCTCTG 62.088 72.222 16.13 16.13 45.79 3.35
7086 7255 1.296755 CCTGGAAGTCGACGTCTCGA 61.297 60.000 26.73 13.70 46.85 4.04
7087 7256 1.134901 CCTGGAAGTCGACGTCTCG 59.865 63.158 26.73 18.36 41.65 4.04
7088 7257 0.109689 CACCTGGAAGTCGACGTCTC 60.110 60.000 26.73 18.40 0.00 3.36
7089 7258 1.957562 CACCTGGAAGTCGACGTCT 59.042 57.895 26.73 9.29 0.00 4.18
7090 7259 1.733399 GCACCTGGAAGTCGACGTC 60.733 63.158 21.36 21.36 0.00 4.34
7091 7260 2.338984 GCACCTGGAAGTCGACGT 59.661 61.111 10.46 6.85 0.00 4.34
7092 7261 1.734477 CTGCACCTGGAAGTCGACG 60.734 63.158 10.46 0.00 0.00 5.12
7097 7266 1.538876 TAGGCCTGCACCTGGAAGT 60.539 57.895 17.99 0.00 41.34 3.01
7099 7268 2.971598 GCTAGGCCTGCACCTGGAA 61.972 63.158 17.99 0.00 40.63 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.