Multiple sequence alignment - TraesCS3D01G303400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G303400 chr3D 100.000 4155 0 0 1 4155 418239438 418235284 0.000000e+00 7673
1 TraesCS3D01G303400 chr3D 94.681 94 4 1 351 443 23068008 23067915 1.200000e-30 145
2 TraesCS3D01G303400 chr3A 88.027 2489 121 85 769 3187 532843921 532846302 0.000000e+00 2782
3 TraesCS3D01G303400 chr3A 94.816 598 23 5 3562 4155 532846454 532847047 0.000000e+00 926
4 TraesCS3D01G303400 chr3A 87.251 502 33 16 1 498 532842901 532843375 1.020000e-150 544
5 TraesCS3D01G303400 chr3A 84.120 233 15 11 3190 3421 581404912 581405123 5.440000e-49 206
6 TraesCS3D01G303400 chr3A 84.862 218 12 7 3190 3406 27719609 27719806 2.530000e-47 200
7 TraesCS3D01G303400 chr3A 97.647 85 0 2 353 437 557265007 557264925 1.200000e-30 145
8 TraesCS3D01G303400 chr3B 89.017 1302 63 34 783 2054 544559464 544558213 0.000000e+00 1539
9 TraesCS3D01G303400 chr3B 86.183 1158 62 29 2059 3191 544558170 544557086 0.000000e+00 1162
10 TraesCS3D01G303400 chr3B 96.026 604 19 3 3552 4155 544556920 544556322 0.000000e+00 977
11 TraesCS3D01G303400 chr3B 83.770 610 56 19 160 754 544560047 544559466 4.730000e-149 538
12 TraesCS3D01G303400 chr3B 92.254 142 7 3 3413 3553 544557098 544556960 9.110000e-47 198
13 TraesCS3D01G303400 chr3B 84.475 219 11 8 3192 3409 31258789 31258985 1.180000e-45 195
14 TraesCS3D01G303400 chr2B 85.775 703 67 23 1604 2294 726686011 726686692 0.000000e+00 713
15 TraesCS3D01G303400 chr5D 95.853 217 9 0 3192 3408 559224656 559224872 6.610000e-93 351
16 TraesCS3D01G303400 chr7B 88.128 219 18 3 3192 3410 15268221 15268431 1.920000e-63 254
17 TraesCS3D01G303400 chr2A 86.364 220 9 9 3190 3408 195783648 195783449 1.940000e-53 220
18 TraesCS3D01G303400 chr7A 86.036 222 10 7 3190 3410 581150343 581150544 6.990000e-53 219
19 TraesCS3D01G303400 chr7A 81.019 216 17 2 3192 3406 676387666 676387474 2.590000e-32 150
20 TraesCS3D01G303400 chr7D 85.455 220 9 9 3192 3410 617030348 617030151 1.510000e-49 207
21 TraesCS3D01G303400 chr7D 84.793 217 8 9 3192 3407 33745442 33745634 1.180000e-45 195
22 TraesCS3D01G303400 chr7D 82.273 220 12 9 3192 3410 556709510 556709317 9.240000e-37 165
23 TraesCS3D01G303400 chr6A 85.321 218 8 8 3192 3408 446737224 446737418 1.960000e-48 204
24 TraesCS3D01G303400 chr2D 83.871 217 11 11 3192 3407 15746071 15746264 7.090000e-43 185
25 TraesCS3D01G303400 chr4D 97.727 88 0 2 350 437 473811599 473811684 2.590000e-32 150
26 TraesCS3D01G303400 chr1D 95.699 93 4 0 351 443 423607310 423607402 2.590000e-32 150
27 TraesCS3D01G303400 chr1B 97.647 85 2 0 354 438 572913837 572913921 3.350000e-31 147
28 TraesCS3D01G303400 chr1A 96.629 89 1 2 350 437 552966527 552966440 3.350000e-31 147
29 TraesCS3D01G303400 chr6D 95.556 90 4 0 354 443 114190319 114190408 1.200000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G303400 chr3D 418235284 418239438 4154 True 7673.000000 7673 100.000000 1 4155 1 chr3D.!!$R2 4154
1 TraesCS3D01G303400 chr3A 532842901 532847047 4146 False 1417.333333 2782 90.031333 1 4155 3 chr3A.!!$F3 4154
2 TraesCS3D01G303400 chr3B 544556322 544560047 3725 True 882.800000 1539 89.450000 160 4155 5 chr3B.!!$R1 3995
3 TraesCS3D01G303400 chr2B 726686011 726686692 681 False 713.000000 713 85.775000 1604 2294 1 chr2B.!!$F1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 534 0.529378 TCTACCTCCGCTTTCGTTCC 59.471 55.0 0.00 0.0 0.0 3.62 F
1355 1833 0.179181 TCCTCGATGACAACGTACGC 60.179 55.0 16.72 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2424 0.322277 ACACAATGAGCTGCTGGAGG 60.322 55.0 7.01 0.0 0.0 4.30 R
3246 3874 0.036388 GAGCATCGACAGGAAACCCA 60.036 55.0 0.00 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 289 2.097110 ATGGCCCAATGAGCAATGAT 57.903 45.000 0.00 0.00 0.00 2.45
294 311 4.812476 CATCGACCGAGCGGGCAA 62.812 66.667 15.94 0.00 45.70 4.52
353 370 1.810151 GAACTAAACCGCCATCAAGCA 59.190 47.619 0.00 0.00 0.00 3.91
443 464 6.019801 CCACTATACTACAACGACTGAATTGC 60.020 42.308 0.00 0.00 0.00 3.56
466 488 5.810587 GCTCAGTTCGTCAATTCCACTTATA 59.189 40.000 0.00 0.00 0.00 0.98
507 529 5.819825 AATCAATTTCTACCTCCGCTTTC 57.180 39.130 0.00 0.00 0.00 2.62
512 534 0.529378 TCTACCTCCGCTTTCGTTCC 59.471 55.000 0.00 0.00 0.00 3.62
530 552 4.497966 CGTTCCGTGTACTGTACATACATG 59.502 45.833 22.21 19.89 41.34 3.21
533 555 4.883006 TCCGTGTACTGTACATACATGCTA 59.117 41.667 22.21 13.56 41.34 3.49
536 558 5.907945 CGTGTACTGTACATACATGCTACTC 59.092 44.000 22.21 5.52 41.34 2.59
537 559 5.907945 GTGTACTGTACATACATGCTACTCG 59.092 44.000 22.21 0.00 41.34 4.18
538 560 5.587443 TGTACTGTACATACATGCTACTCGT 59.413 40.000 16.26 0.00 35.36 4.18
539 561 4.921547 ACTGTACATACATGCTACTCGTG 58.078 43.478 0.00 0.00 35.36 4.35
540 562 3.702330 TGTACATACATGCTACTCGTGC 58.298 45.455 0.00 0.00 35.07 5.34
541 563 2.225068 ACATACATGCTACTCGTGCC 57.775 50.000 0.00 0.00 35.07 5.01
542 564 1.480545 ACATACATGCTACTCGTGCCA 59.519 47.619 0.00 0.00 35.07 4.92
761 1203 7.066043 CGGGAAGGTATGATATCTACAGACTAC 59.934 44.444 3.98 0.00 31.38 2.73
764 1206 9.727859 GAAGGTATGATATCTACAGACTACAGA 57.272 37.037 3.98 0.00 31.38 3.41
765 1207 9.733556 AAGGTATGATATCTACAGACTACAGAG 57.266 37.037 3.98 0.00 31.38 3.35
766 1208 8.325787 AGGTATGATATCTACAGACTACAGAGG 58.674 40.741 3.98 0.00 31.38 3.69
767 1209 7.554835 GGTATGATATCTACAGACTACAGAGGG 59.445 44.444 3.98 0.00 31.38 4.30
789 1253 2.027561 CCCTGTTCCCGTATCTGTTTCA 60.028 50.000 0.00 0.00 0.00 2.69
858 1322 1.446272 GAGCCAAGACGGAACTCGG 60.446 63.158 0.00 0.00 44.45 4.63
1052 1527 4.873129 CCGATGACGCAGACCCCG 62.873 72.222 0.00 0.00 38.29 5.73
1355 1833 0.179181 TCCTCGATGACAACGTACGC 60.179 55.000 16.72 0.00 0.00 4.42
1522 2013 3.827898 GCCGGTCCTCCTCGTCTG 61.828 72.222 1.90 0.00 0.00 3.51
1523 2014 2.361357 CCGGTCCTCCTCGTCTGT 60.361 66.667 0.00 0.00 0.00 3.41
1524 2015 1.977544 CCGGTCCTCCTCGTCTGTT 60.978 63.158 0.00 0.00 0.00 3.16
1525 2016 0.679002 CCGGTCCTCCTCGTCTGTTA 60.679 60.000 0.00 0.00 0.00 2.41
1526 2017 1.390565 CGGTCCTCCTCGTCTGTTAT 58.609 55.000 0.00 0.00 0.00 1.89
1527 2018 1.334243 CGGTCCTCCTCGTCTGTTATC 59.666 57.143 0.00 0.00 0.00 1.75
1528 2019 2.657143 GGTCCTCCTCGTCTGTTATCT 58.343 52.381 0.00 0.00 0.00 1.98
1529 2020 2.359531 GGTCCTCCTCGTCTGTTATCTG 59.640 54.545 0.00 0.00 0.00 2.90
1530 2021 2.025155 TCCTCCTCGTCTGTTATCTGC 58.975 52.381 0.00 0.00 0.00 4.26
1531 2022 1.268794 CCTCCTCGTCTGTTATCTGCG 60.269 57.143 0.00 0.00 0.00 5.18
1532 2023 1.671328 CTCCTCGTCTGTTATCTGCGA 59.329 52.381 0.00 0.00 0.00 5.10
1533 2024 2.292016 CTCCTCGTCTGTTATCTGCGAT 59.708 50.000 0.00 0.00 0.00 4.58
1534 2025 2.290916 TCCTCGTCTGTTATCTGCGATC 59.709 50.000 0.00 0.00 0.00 3.69
1535 2026 2.033424 CCTCGTCTGTTATCTGCGATCA 59.967 50.000 0.00 0.00 0.00 2.92
1548 2039 1.211818 GCGATCAGATCACACGGCTC 61.212 60.000 11.12 0.00 0.00 4.70
1570 2064 4.569966 TCTTCTCCTCGCGTTTACTACTAG 59.430 45.833 5.77 0.00 0.00 2.57
1571 2065 3.866651 TCTCCTCGCGTTTACTACTAGT 58.133 45.455 5.77 0.00 0.00 2.57
1572 2066 3.868077 TCTCCTCGCGTTTACTACTAGTC 59.132 47.826 5.77 0.00 0.00 2.59
1574 2068 5.011090 TCCTCGCGTTTACTACTAGTCTA 57.989 43.478 5.77 0.00 0.00 2.59
1575 2069 4.806247 TCCTCGCGTTTACTACTAGTCTAC 59.194 45.833 5.77 0.00 0.00 2.59
1576 2070 4.808364 CCTCGCGTTTACTACTAGTCTACT 59.192 45.833 5.77 0.00 0.00 2.57
1577 2071 5.980116 CCTCGCGTTTACTACTAGTCTACTA 59.020 44.000 5.77 0.00 0.00 1.82
1578 2072 6.074569 CCTCGCGTTTACTACTAGTCTACTAC 60.075 46.154 5.77 0.00 0.00 2.73
1579 2073 6.565234 TCGCGTTTACTACTAGTCTACTACT 58.435 40.000 5.77 0.00 42.62 2.57
1580 2074 7.704271 TCGCGTTTACTACTAGTCTACTACTA 58.296 38.462 5.77 0.00 39.80 1.82
1725 2234 1.739562 CTCTGTTGCCGTCCTCTGC 60.740 63.158 0.00 0.00 0.00 4.26
1729 2238 2.828868 TTGCCGTCCTCTGCAACT 59.171 55.556 0.00 0.00 42.19 3.16
1761 2280 9.053840 TCAGTGTATGTATTGCTAGTAGTAGTC 57.946 37.037 6.47 0.17 0.00 2.59
1762 2281 8.837389 CAGTGTATGTATTGCTAGTAGTAGTCA 58.163 37.037 6.47 2.64 0.00 3.41
1764 2283 9.613957 GTGTATGTATTGCTAGTAGTAGTCATG 57.386 37.037 6.47 0.00 0.00 3.07
1768 2287 8.521170 TGTATTGCTAGTAGTAGTCATGAACT 57.479 34.615 0.00 0.36 42.33 3.01
1769 2288 8.622157 TGTATTGCTAGTAGTAGTCATGAACTC 58.378 37.037 3.29 0.00 39.55 3.01
1770 2289 7.646548 ATTGCTAGTAGTAGTCATGAACTCA 57.353 36.000 3.29 0.00 39.55 3.41
1771 2290 7.646548 TTGCTAGTAGTAGTCATGAACTCAT 57.353 36.000 3.29 0.00 39.55 2.90
1858 2381 1.903183 AGCAAGTTCCTGGAGAGGTAC 59.097 52.381 0.00 0.00 40.76 3.34
1885 2409 3.328931 TCTTTTGATCACTGCTCTCCCTT 59.671 43.478 0.00 0.00 0.00 3.95
1900 2424 2.554032 CTCCCTTGTGGACAATGTTCAC 59.446 50.000 17.51 17.51 42.01 3.18
1904 2428 2.270352 TGTGGACAATGTTCACCTCC 57.730 50.000 20.99 0.94 41.04 4.30
2072 2635 1.723542 GCACTCAGTCACGATCAACAG 59.276 52.381 0.00 0.00 0.00 3.16
2110 2674 1.893335 TGCAGTGCAGCACAACGAT 60.893 52.632 27.35 3.09 40.11 3.73
2154 2726 0.306533 GTGTGCACGTTAACAGTGGG 59.693 55.000 22.80 5.14 39.80 4.61
2285 2857 3.691342 CCGTGTCCCCGAAGCTGA 61.691 66.667 0.00 0.00 0.00 4.26
2290 2862 3.744719 TCCCCGAAGCTGACGTCG 61.745 66.667 11.62 7.05 45.74 5.12
2476 3048 0.533032 GGCACTCAGTCTCAGGTACC 59.467 60.000 2.73 2.73 0.00 3.34
2477 3049 1.257743 GCACTCAGTCTCAGGTACCA 58.742 55.000 15.94 0.00 0.00 3.25
2478 3050 1.203523 GCACTCAGTCTCAGGTACCAG 59.796 57.143 15.94 6.26 0.00 4.00
2479 3051 2.796557 CACTCAGTCTCAGGTACCAGA 58.203 52.381 15.94 11.14 0.00 3.86
2480 3052 3.157881 CACTCAGTCTCAGGTACCAGAA 58.842 50.000 15.94 0.00 0.00 3.02
2481 3053 3.766591 CACTCAGTCTCAGGTACCAGAAT 59.233 47.826 15.94 5.47 0.00 2.40
2482 3054 4.950475 CACTCAGTCTCAGGTACCAGAATA 59.050 45.833 15.94 0.00 0.00 1.75
2486 3058 6.436027 TCAGTCTCAGGTACCAGAATAGAAT 58.564 40.000 15.94 1.89 0.00 2.40
2498 3070 5.875359 ACCAGAATAGAATGAACGTTCTTCC 59.125 40.000 27.32 11.01 39.15 3.46
2504 3076 9.118236 GAATAGAATGAACGTTCTTCCTTTTTG 57.882 33.333 27.32 0.00 39.15 2.44
2508 3080 4.739195 TGAACGTTCTTCCTTTTTGTTGG 58.261 39.130 27.32 0.00 0.00 3.77
2511 3083 3.129813 ACGTTCTTCCTTTTTGTTGGTCC 59.870 43.478 0.00 0.00 0.00 4.46
2541 3113 3.262660 AGTTCATCAGCATTCACAGGAGA 59.737 43.478 0.00 0.00 0.00 3.71
2543 3115 4.069300 TCATCAGCATTCACAGGAGATC 57.931 45.455 0.00 0.00 0.00 2.75
2544 3116 3.453353 TCATCAGCATTCACAGGAGATCA 59.547 43.478 0.00 0.00 0.00 2.92
2548 3139 4.080751 TCAGCATTCACAGGAGATCATTCA 60.081 41.667 0.00 0.00 0.00 2.57
2560 3151 6.238610 GGAGATCATTCATCATTTTCTCCG 57.761 41.667 0.00 0.00 38.67 4.63
2562 3153 5.374921 AGATCATTCATCATTTTCTCCGCT 58.625 37.500 0.00 0.00 33.29 5.52
2563 3154 6.528321 AGATCATTCATCATTTTCTCCGCTA 58.472 36.000 0.00 0.00 33.29 4.26
2594 3185 7.019418 AGTACGTTGTTGTTCTTCTGTTTTTC 58.981 34.615 0.00 0.00 0.00 2.29
2630 3221 2.365617 GACGAGGATAGATGGCAAGGAA 59.634 50.000 0.00 0.00 0.00 3.36
2654 3245 0.981183 TCCGTCAAGCAAGGTACCAT 59.019 50.000 15.94 0.00 0.00 3.55
2655 3246 2.181125 TCCGTCAAGCAAGGTACCATA 58.819 47.619 15.94 0.00 0.00 2.74
2656 3247 2.093869 TCCGTCAAGCAAGGTACCATAC 60.094 50.000 15.94 2.01 0.00 2.39
2667 3258 2.047679 GTACCATACCACTCGATCGC 57.952 55.000 11.09 0.00 0.00 4.58
2841 3468 2.751688 GGTAACTGGGAACGGGCA 59.248 61.111 0.00 0.00 42.76 5.36
2863 3490 1.882623 CCCACTTTCAGTTTCCAGCTC 59.117 52.381 0.00 0.00 0.00 4.09
2900 3527 6.605995 TCTTTCGGATACAGATCTTGAGGTAA 59.394 38.462 0.00 0.00 32.15 2.85
2901 3528 5.769484 TCGGATACAGATCTTGAGGTAAC 57.231 43.478 0.00 0.00 32.15 2.50
2902 3529 5.198207 TCGGATACAGATCTTGAGGTAACA 58.802 41.667 0.00 0.00 33.09 2.41
2903 3530 5.067413 TCGGATACAGATCTTGAGGTAACAC 59.933 44.000 0.00 0.00 33.09 3.32
2904 3531 5.602628 GGATACAGATCTTGAGGTAACACC 58.397 45.833 0.00 0.00 33.53 4.16
2916 3543 8.148351 TCTTGAGGTAACACCATACTATATTGC 58.852 37.037 0.00 0.00 41.95 3.56
2918 3545 7.441836 TGAGGTAACACCATACTATATTGCTG 58.558 38.462 0.00 0.00 41.95 4.41
2919 3546 7.070696 TGAGGTAACACCATACTATATTGCTGT 59.929 37.037 0.00 0.00 41.95 4.40
2920 3547 7.217200 AGGTAACACCATACTATATTGCTGTG 58.783 38.462 0.00 0.00 41.95 3.66
3045 3672 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3047 3674 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
3048 3675 0.036164 ACACACACACACACACACCT 59.964 50.000 0.00 0.00 0.00 4.00
3049 3676 0.447406 CACACACACACACACACCTG 59.553 55.000 0.00 0.00 0.00 4.00
3050 3677 0.036164 ACACACACACACACACCTGT 59.964 50.000 0.00 0.00 0.00 4.00
3051 3678 1.164411 CACACACACACACACCTGTT 58.836 50.000 0.00 0.00 0.00 3.16
3052 3679 1.135717 CACACACACACACACCTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
3053 3680 0.451383 CACACACACACACCTGTTGG 59.549 55.000 0.00 0.00 39.83 3.77
3054 3681 1.312371 ACACACACACACCTGTTGGC 61.312 55.000 0.00 0.00 36.63 4.52
3056 3683 0.544223 ACACACACACCTGTTGGCTA 59.456 50.000 0.00 0.00 36.63 3.93
3059 3686 2.030893 CACACACACCTGTTGGCTATTG 60.031 50.000 0.00 0.00 36.63 1.90
3060 3687 1.068333 CACACACCTGTTGGCTATTGC 60.068 52.381 0.00 0.00 36.63 3.56
3061 3688 0.168788 CACACCTGTTGGCTATTGCG 59.831 55.000 0.00 0.00 40.82 4.85
3164 3791 6.502652 TCATCTGTTCATCGCAAAAGAAAAA 58.497 32.000 0.00 0.00 0.00 1.94
3194 3822 8.908786 ATCATCATTTCTTTATCATACGGTGT 57.091 30.769 0.00 0.00 0.00 4.16
3195 3823 8.365399 TCATCATTTCTTTATCATACGGTGTC 57.635 34.615 0.00 0.00 0.00 3.67
3196 3824 6.822073 TCATTTCTTTATCATACGGTGTCG 57.178 37.500 0.00 0.00 43.02 4.35
3207 3835 1.850640 CGGTGTCGTCAGGTTTTCG 59.149 57.895 0.00 0.00 0.00 3.46
3208 3836 0.872881 CGGTGTCGTCAGGTTTTCGT 60.873 55.000 0.00 0.00 0.00 3.85
3209 3837 0.857287 GGTGTCGTCAGGTTTTCGTC 59.143 55.000 0.00 0.00 0.00 4.20
3210 3838 0.857287 GTGTCGTCAGGTTTTCGTCC 59.143 55.000 0.00 0.00 0.00 4.79
3211 3839 0.249573 TGTCGTCAGGTTTTCGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
3212 3840 0.249573 GTCGTCAGGTTTTCGTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
3213 3841 0.682852 TCGTCAGGTTTTCGTCCCAT 59.317 50.000 0.00 0.00 0.00 4.00
3214 3842 0.796312 CGTCAGGTTTTCGTCCCATG 59.204 55.000 0.00 0.00 0.00 3.66
3215 3843 1.165270 GTCAGGTTTTCGTCCCATGG 58.835 55.000 4.14 4.14 0.00 3.66
3216 3844 0.608035 TCAGGTTTTCGTCCCATGGC 60.608 55.000 6.09 0.00 0.00 4.40
3217 3845 1.674322 AGGTTTTCGTCCCATGGCG 60.674 57.895 6.09 5.74 0.00 5.69
3218 3846 2.696759 GGTTTTCGTCCCATGGCGG 61.697 63.158 6.09 0.00 0.00 6.13
3219 3847 1.969589 GTTTTCGTCCCATGGCGGT 60.970 57.895 6.09 0.00 0.00 5.68
3220 3848 1.228306 TTTTCGTCCCATGGCGGTT 60.228 52.632 6.09 0.00 0.00 4.44
3221 3849 1.519751 TTTTCGTCCCATGGCGGTTG 61.520 55.000 6.09 0.00 0.00 3.77
3222 3850 2.398840 TTTCGTCCCATGGCGGTTGA 62.399 55.000 6.09 0.00 0.00 3.18
3223 3851 2.124736 CGTCCCATGGCGGTTGAT 60.125 61.111 6.09 0.00 0.00 2.57
3224 3852 2.180204 CGTCCCATGGCGGTTGATC 61.180 63.158 6.09 0.00 0.00 2.92
3225 3853 1.823899 GTCCCATGGCGGTTGATCC 60.824 63.158 6.09 0.00 0.00 3.36
3249 3877 3.866582 GGATCCTCCTGCGGTGGG 61.867 72.222 3.84 5.50 37.01 4.61
3250 3878 3.083997 GATCCTCCTGCGGTGGGT 61.084 66.667 13.33 8.12 37.01 4.51
3251 3879 2.610859 ATCCTCCTGCGGTGGGTT 60.611 61.111 13.33 0.00 37.01 4.11
3252 3880 2.198304 GATCCTCCTGCGGTGGGTTT 62.198 60.000 13.33 2.74 37.01 3.27
3253 3881 2.198304 ATCCTCCTGCGGTGGGTTTC 62.198 60.000 13.33 0.00 37.01 2.78
3254 3882 2.359975 CTCCTGCGGTGGGTTTCC 60.360 66.667 0.00 0.00 0.00 3.13
3255 3883 2.852075 TCCTGCGGTGGGTTTCCT 60.852 61.111 0.00 0.00 0.00 3.36
3256 3884 2.672996 CCTGCGGTGGGTTTCCTG 60.673 66.667 0.00 0.00 0.00 3.86
3257 3885 2.113139 CTGCGGTGGGTTTCCTGT 59.887 61.111 0.00 0.00 0.00 4.00
3258 3886 1.966451 CTGCGGTGGGTTTCCTGTC 60.966 63.158 0.00 0.00 0.00 3.51
3259 3887 3.047877 GCGGTGGGTTTCCTGTCG 61.048 66.667 0.00 0.00 0.00 4.35
3260 3888 2.738480 CGGTGGGTTTCCTGTCGA 59.262 61.111 0.00 0.00 0.00 4.20
3261 3889 1.295423 CGGTGGGTTTCCTGTCGAT 59.705 57.895 0.00 0.00 0.00 3.59
3262 3890 1.019278 CGGTGGGTTTCCTGTCGATG 61.019 60.000 0.00 0.00 0.00 3.84
3263 3891 1.305930 GGTGGGTTTCCTGTCGATGC 61.306 60.000 0.00 0.00 0.00 3.91
3264 3892 0.321653 GTGGGTTTCCTGTCGATGCT 60.322 55.000 0.00 0.00 0.00 3.79
3265 3893 0.036388 TGGGTTTCCTGTCGATGCTC 60.036 55.000 0.00 0.00 0.00 4.26
3266 3894 0.744771 GGGTTTCCTGTCGATGCTCC 60.745 60.000 0.00 0.00 0.00 4.70
3267 3895 0.036388 GGTTTCCTGTCGATGCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
3268 3896 1.363744 GTTTCCTGTCGATGCTCCAG 58.636 55.000 0.00 0.00 0.00 3.86
3269 3897 0.391661 TTTCCTGTCGATGCTCCAGC 60.392 55.000 0.00 0.00 42.50 4.85
3270 3898 1.260538 TTCCTGTCGATGCTCCAGCT 61.261 55.000 0.00 0.00 42.66 4.24
3271 3899 1.227205 CCTGTCGATGCTCCAGCTC 60.227 63.158 0.00 0.00 42.66 4.09
3272 3900 1.588403 CTGTCGATGCTCCAGCTCG 60.588 63.158 11.76 11.76 42.66 5.03
3273 3901 2.959071 GTCGATGCTCCAGCTCGC 60.959 66.667 12.68 0.00 42.66 5.03
3274 3902 3.143515 TCGATGCTCCAGCTCGCT 61.144 61.111 12.68 0.00 42.66 4.93
3275 3903 2.657944 CGATGCTCCAGCTCGCTC 60.658 66.667 0.00 0.00 42.66 5.03
3276 3904 2.280052 GATGCTCCAGCTCGCTCC 60.280 66.667 0.00 0.00 42.66 4.70
3277 3905 2.763292 ATGCTCCAGCTCGCTCCT 60.763 61.111 0.00 0.00 42.66 3.69
3278 3906 2.697992 GATGCTCCAGCTCGCTCCTC 62.698 65.000 0.00 0.00 42.66 3.71
3279 3907 4.219999 GCTCCAGCTCGCTCCTCC 62.220 72.222 0.00 0.00 38.21 4.30
3280 3908 3.535962 CTCCAGCTCGCTCCTCCC 61.536 72.222 0.00 0.00 0.00 4.30
3283 3911 3.080121 CAGCTCGCTCCTCCCCTT 61.080 66.667 0.00 0.00 0.00 3.95
3284 3912 2.284995 AGCTCGCTCCTCCCCTTT 60.285 61.111 0.00 0.00 0.00 3.11
3285 3913 2.188207 GCTCGCTCCTCCCCTTTC 59.812 66.667 0.00 0.00 0.00 2.62
3286 3914 2.660064 GCTCGCTCCTCCCCTTTCA 61.660 63.158 0.00 0.00 0.00 2.69
3287 3915 1.519719 CTCGCTCCTCCCCTTTCAG 59.480 63.158 0.00 0.00 0.00 3.02
3288 3916 1.229209 TCGCTCCTCCCCTTTCAGT 60.229 57.895 0.00 0.00 0.00 3.41
3289 3917 1.219393 CGCTCCTCCCCTTTCAGTC 59.781 63.158 0.00 0.00 0.00 3.51
3290 3918 1.261238 CGCTCCTCCCCTTTCAGTCT 61.261 60.000 0.00 0.00 0.00 3.24
3291 3919 0.988063 GCTCCTCCCCTTTCAGTCTT 59.012 55.000 0.00 0.00 0.00 3.01
3292 3920 2.188817 GCTCCTCCCCTTTCAGTCTTA 58.811 52.381 0.00 0.00 0.00 2.10
3293 3921 2.774809 GCTCCTCCCCTTTCAGTCTTAT 59.225 50.000 0.00 0.00 0.00 1.73
3294 3922 3.201045 GCTCCTCCCCTTTCAGTCTTATT 59.799 47.826 0.00 0.00 0.00 1.40
3295 3923 4.324641 GCTCCTCCCCTTTCAGTCTTATTT 60.325 45.833 0.00 0.00 0.00 1.40
3296 3924 5.808050 GCTCCTCCCCTTTCAGTCTTATTTT 60.808 44.000 0.00 0.00 0.00 1.82
3297 3925 5.570320 TCCTCCCCTTTCAGTCTTATTTTG 58.430 41.667 0.00 0.00 0.00 2.44
3298 3926 4.706962 CCTCCCCTTTCAGTCTTATTTTGG 59.293 45.833 0.00 0.00 0.00 3.28
3299 3927 4.672899 TCCCCTTTCAGTCTTATTTTGGG 58.327 43.478 0.00 0.00 0.00 4.12
3300 3928 4.107311 TCCCCTTTCAGTCTTATTTTGGGT 59.893 41.667 0.00 0.00 0.00 4.51
3301 3929 4.462834 CCCCTTTCAGTCTTATTTTGGGTC 59.537 45.833 0.00 0.00 0.00 4.46
3302 3930 5.325239 CCCTTTCAGTCTTATTTTGGGTCT 58.675 41.667 0.00 0.00 0.00 3.85
3303 3931 5.416013 CCCTTTCAGTCTTATTTTGGGTCTC 59.584 44.000 0.00 0.00 0.00 3.36
3304 3932 5.122396 CCTTTCAGTCTTATTTTGGGTCTCG 59.878 44.000 0.00 0.00 0.00 4.04
3305 3933 4.884668 TCAGTCTTATTTTGGGTCTCGT 57.115 40.909 0.00 0.00 0.00 4.18
3306 3934 4.566004 TCAGTCTTATTTTGGGTCTCGTG 58.434 43.478 0.00 0.00 0.00 4.35
3307 3935 3.684788 CAGTCTTATTTTGGGTCTCGTGG 59.315 47.826 0.00 0.00 0.00 4.94
3308 3936 3.326880 AGTCTTATTTTGGGTCTCGTGGT 59.673 43.478 0.00 0.00 0.00 4.16
3309 3937 3.683340 GTCTTATTTTGGGTCTCGTGGTC 59.317 47.826 0.00 0.00 0.00 4.02
3310 3938 2.373540 TATTTTGGGTCTCGTGGTCG 57.626 50.000 0.00 0.00 38.55 4.79
3311 3939 0.395312 ATTTTGGGTCTCGTGGTCGT 59.605 50.000 0.00 0.00 38.33 4.34
3312 3940 0.178533 TTTTGGGTCTCGTGGTCGTT 59.821 50.000 0.00 0.00 38.33 3.85
3313 3941 0.178533 TTTGGGTCTCGTGGTCGTTT 59.821 50.000 0.00 0.00 38.33 3.60
3314 3942 0.178533 TTGGGTCTCGTGGTCGTTTT 59.821 50.000 0.00 0.00 38.33 2.43
3315 3943 1.039068 TGGGTCTCGTGGTCGTTTTA 58.961 50.000 0.00 0.00 38.33 1.52
3316 3944 1.619827 TGGGTCTCGTGGTCGTTTTAT 59.380 47.619 0.00 0.00 38.33 1.40
3317 3945 2.037511 TGGGTCTCGTGGTCGTTTTATT 59.962 45.455 0.00 0.00 38.33 1.40
3318 3946 3.069289 GGGTCTCGTGGTCGTTTTATTT 58.931 45.455 0.00 0.00 38.33 1.40
3319 3947 3.499537 GGGTCTCGTGGTCGTTTTATTTT 59.500 43.478 0.00 0.00 38.33 1.82
3320 3948 4.460505 GGTCTCGTGGTCGTTTTATTTTG 58.539 43.478 0.00 0.00 38.33 2.44
3321 3949 4.460505 GTCTCGTGGTCGTTTTATTTTGG 58.539 43.478 0.00 0.00 38.33 3.28
3322 3950 3.499157 TCTCGTGGTCGTTTTATTTTGGG 59.501 43.478 0.00 0.00 38.33 4.12
3323 3951 3.212685 TCGTGGTCGTTTTATTTTGGGT 58.787 40.909 0.00 0.00 38.33 4.51
3324 3952 4.384056 TCGTGGTCGTTTTATTTTGGGTA 58.616 39.130 0.00 0.00 38.33 3.69
3325 3953 5.002516 TCGTGGTCGTTTTATTTTGGGTAT 58.997 37.500 0.00 0.00 38.33 2.73
3326 3954 5.090083 CGTGGTCGTTTTATTTTGGGTATG 58.910 41.667 0.00 0.00 0.00 2.39
3327 3955 5.106634 CGTGGTCGTTTTATTTTGGGTATGA 60.107 40.000 0.00 0.00 0.00 2.15
3328 3956 6.403855 CGTGGTCGTTTTATTTTGGGTATGAT 60.404 38.462 0.00 0.00 0.00 2.45
3329 3957 7.201626 CGTGGTCGTTTTATTTTGGGTATGATA 60.202 37.037 0.00 0.00 0.00 2.15
3330 3958 7.911727 GTGGTCGTTTTATTTTGGGTATGATAC 59.088 37.037 0.00 0.00 0.00 2.24
3345 3973 7.690952 GGTATGATACCTAGAGAACTACTGG 57.309 44.000 14.30 0.00 45.52 4.00
3346 3974 7.460071 GGTATGATACCTAGAGAACTACTGGA 58.540 42.308 14.30 0.00 45.52 3.86
3347 3975 7.391275 GGTATGATACCTAGAGAACTACTGGAC 59.609 44.444 14.30 0.00 45.52 4.02
3348 3976 5.692928 TGATACCTAGAGAACTACTGGACC 58.307 45.833 0.00 0.00 0.00 4.46
3349 3977 5.193124 TGATACCTAGAGAACTACTGGACCA 59.807 44.000 0.00 0.00 0.00 4.02
3350 3978 4.611564 ACCTAGAGAACTACTGGACCAT 57.388 45.455 0.00 0.00 0.00 3.55
3351 3979 4.282496 ACCTAGAGAACTACTGGACCATG 58.718 47.826 0.00 0.00 0.00 3.66
3352 3980 4.264442 ACCTAGAGAACTACTGGACCATGT 60.264 45.833 0.00 0.00 0.00 3.21
3353 3981 5.044328 ACCTAGAGAACTACTGGACCATGTA 60.044 44.000 0.00 0.00 0.00 2.29
3354 3982 6.071984 CCTAGAGAACTACTGGACCATGTAT 58.928 44.000 0.00 0.00 0.00 2.29
3355 3983 6.551601 CCTAGAGAACTACTGGACCATGTATT 59.448 42.308 0.00 0.00 0.00 1.89
3356 3984 6.875972 AGAGAACTACTGGACCATGTATTT 57.124 37.500 0.00 0.93 0.00 1.40
3357 3985 6.879400 AGAGAACTACTGGACCATGTATTTC 58.121 40.000 17.20 17.20 32.25 2.17
3358 3986 5.990668 AGAACTACTGGACCATGTATTTCC 58.009 41.667 19.21 0.00 32.39 3.13
3359 3987 4.402056 ACTACTGGACCATGTATTTCCG 57.598 45.455 0.00 0.00 31.38 4.30
3360 3988 3.773119 ACTACTGGACCATGTATTTCCGT 59.227 43.478 0.00 0.00 31.38 4.69
3361 3989 3.713826 ACTGGACCATGTATTTCCGTT 57.286 42.857 0.00 0.00 31.38 4.44
3362 3990 3.343617 ACTGGACCATGTATTTCCGTTG 58.656 45.455 0.00 0.00 31.38 4.10
3363 3991 3.008594 ACTGGACCATGTATTTCCGTTGA 59.991 43.478 0.00 0.00 31.38 3.18
3364 3992 4.199310 CTGGACCATGTATTTCCGTTGAT 58.801 43.478 0.00 0.00 31.38 2.57
3365 3993 4.594970 TGGACCATGTATTTCCGTTGATT 58.405 39.130 0.00 0.00 31.38 2.57
3366 3994 4.397730 TGGACCATGTATTTCCGTTGATTG 59.602 41.667 0.00 0.00 31.38 2.67
3367 3995 4.351192 GACCATGTATTTCCGTTGATTGC 58.649 43.478 0.00 0.00 0.00 3.56
3368 3996 3.761218 ACCATGTATTTCCGTTGATTGCA 59.239 39.130 0.00 0.00 0.00 4.08
3369 3997 4.219507 ACCATGTATTTCCGTTGATTGCAA 59.780 37.500 0.00 0.00 0.00 4.08
3370 3998 5.167121 CCATGTATTTCCGTTGATTGCAAA 58.833 37.500 1.71 0.00 35.42 3.68
3371 3999 5.636965 CCATGTATTTCCGTTGATTGCAAAA 59.363 36.000 1.71 0.00 35.42 2.44
3372 4000 6.313411 CCATGTATTTCCGTTGATTGCAAAAT 59.687 34.615 1.71 0.00 35.42 1.82
3373 4001 7.148440 CCATGTATTTCCGTTGATTGCAAAATT 60.148 33.333 1.71 0.00 35.42 1.82
3374 4002 8.867935 CATGTATTTCCGTTGATTGCAAAATTA 58.132 29.630 1.71 0.00 35.42 1.40
3375 4003 8.818141 TGTATTTCCGTTGATTGCAAAATTAA 57.182 26.923 1.71 0.00 35.42 1.40
3376 4004 9.429359 TGTATTTCCGTTGATTGCAAAATTAAT 57.571 25.926 1.71 0.00 35.42 1.40
3377 4005 9.687717 GTATTTCCGTTGATTGCAAAATTAATG 57.312 29.630 1.71 2.20 35.42 1.90
3378 4006 6.718454 TTCCGTTGATTGCAAAATTAATGG 57.282 33.333 1.71 11.07 36.62 3.16
3379 4007 6.030548 TCCGTTGATTGCAAAATTAATGGA 57.969 33.333 17.86 17.86 39.82 3.41
3380 4008 6.459066 TCCGTTGATTGCAAAATTAATGGAA 58.541 32.000 18.78 1.52 39.43 3.53
3381 4009 6.931281 TCCGTTGATTGCAAAATTAATGGAAA 59.069 30.769 18.78 5.81 39.43 3.13
3382 4010 7.117523 TCCGTTGATTGCAAAATTAATGGAAAG 59.882 33.333 18.78 3.09 39.43 2.62
3383 4011 7.235777 CGTTGATTGCAAAATTAATGGAAAGG 58.764 34.615 1.71 0.00 35.42 3.11
3384 4012 7.529158 GTTGATTGCAAAATTAATGGAAAGGG 58.471 34.615 1.71 0.00 35.42 3.95
3385 4013 6.179040 TGATTGCAAAATTAATGGAAAGGGG 58.821 36.000 1.71 0.00 31.75 4.79
3386 4014 5.574970 TTGCAAAATTAATGGAAAGGGGT 57.425 34.783 0.00 0.00 0.00 4.95
3387 4015 4.904241 TGCAAAATTAATGGAAAGGGGTG 58.096 39.130 0.00 0.00 0.00 4.61
3388 4016 3.689161 GCAAAATTAATGGAAAGGGGTGC 59.311 43.478 0.00 0.00 0.00 5.01
3389 4017 3.885724 AAATTAATGGAAAGGGGTGCG 57.114 42.857 0.00 0.00 0.00 5.34
3390 4018 2.818751 ATTAATGGAAAGGGGTGCGA 57.181 45.000 0.00 0.00 0.00 5.10
3391 4019 2.122783 TTAATGGAAAGGGGTGCGAG 57.877 50.000 0.00 0.00 0.00 5.03
3392 4020 0.393808 TAATGGAAAGGGGTGCGAGC 60.394 55.000 0.00 0.00 0.00 5.03
3393 4021 3.645268 ATGGAAAGGGGTGCGAGCC 62.645 63.158 0.00 0.00 34.31 4.70
3394 4022 4.035102 GGAAAGGGGTGCGAGCCT 62.035 66.667 0.00 0.00 35.71 4.58
3395 4023 2.747855 GAAAGGGGTGCGAGCCTG 60.748 66.667 0.00 0.00 35.71 4.85
3396 4024 4.351054 AAAGGGGTGCGAGCCTGG 62.351 66.667 0.00 0.00 35.71 4.45
3401 4029 4.329545 GGTGCGAGCCTGGTTGGA 62.330 66.667 0.00 0.00 38.35 3.53
3402 4030 2.281484 GTGCGAGCCTGGTTGGAA 60.281 61.111 0.00 0.00 38.35 3.53
3403 4031 1.896660 GTGCGAGCCTGGTTGGAAA 60.897 57.895 0.00 0.00 38.35 3.13
3404 4032 1.152860 TGCGAGCCTGGTTGGAAAA 60.153 52.632 0.00 0.00 38.35 2.29
3405 4033 0.753479 TGCGAGCCTGGTTGGAAAAA 60.753 50.000 0.00 0.00 38.35 1.94
3440 4068 0.238025 TACGAAGAACTGCACGCGTA 59.762 50.000 13.44 0.00 33.69 4.42
3444 4072 2.597971 CGAAGAACTGCACGCGTAAAAA 60.598 45.455 13.44 0.00 0.00 1.94
3445 4073 2.378507 AGAACTGCACGCGTAAAAAC 57.621 45.000 13.44 2.19 0.00 2.43
3446 4074 1.032080 GAACTGCACGCGTAAAAACG 58.968 50.000 13.44 0.00 0.00 3.60
3447 4075 0.374410 AACTGCACGCGTAAAAACGT 59.626 45.000 13.44 0.26 44.75 3.99
3450 4078 2.030213 ACTGCACGCGTAAAAACGTAAA 59.970 40.909 13.44 0.00 41.32 2.01
3451 4079 3.219981 CTGCACGCGTAAAAACGTAAAT 58.780 40.909 13.44 0.00 41.32 1.40
3501 4129 2.038033 AGGTTGTGCTTTACGCTCCTTA 59.962 45.455 0.00 0.00 40.11 2.69
3516 4144 5.105310 ACGCTCCTTATTGTAATCAGACACT 60.105 40.000 0.00 0.00 0.00 3.55
3517 4145 5.233050 CGCTCCTTATTGTAATCAGACACTG 59.767 44.000 0.00 0.00 0.00 3.66
3553 4181 4.541973 AATGGAAAACAGATCAAAGGGC 57.458 40.909 0.00 0.00 0.00 5.19
3554 4182 3.243359 TGGAAAACAGATCAAAGGGCT 57.757 42.857 0.00 0.00 0.00 5.19
3555 4183 4.380843 TGGAAAACAGATCAAAGGGCTA 57.619 40.909 0.00 0.00 0.00 3.93
3668 4346 0.723981 GGCTTCACATTCAGAGTCGC 59.276 55.000 0.00 0.00 0.00 5.19
3671 4349 2.159734 GCTTCACATTCAGAGTCGCAAG 60.160 50.000 0.00 0.00 0.00 4.01
3672 4350 2.820059 TCACATTCAGAGTCGCAAGT 57.180 45.000 0.00 0.00 39.48 3.16
3673 4351 2.677199 TCACATTCAGAGTCGCAAGTC 58.323 47.619 0.00 0.00 39.48 3.01
3697 4375 4.332819 GTCGTAACTAAAAGCAGATGCCAT 59.667 41.667 0.14 0.00 43.38 4.40
3730 4408 6.405731 CCTTTCAAAGGTCACTTTTGATGACA 60.406 38.462 15.24 0.00 46.89 3.58
3992 4670 4.462483 GGCAGGATGATGGTTTTTGTAGAA 59.538 41.667 0.00 0.00 39.69 2.10
3997 4675 2.817258 TGATGGTTTTTGTAGAAGGGCG 59.183 45.455 0.00 0.00 0.00 6.13
4073 4751 5.412904 CGTCTTTTTAAGGCCTCTCAAGATT 59.587 40.000 5.23 0.00 0.00 2.40
4087 4765 6.587608 CCTCTCAAGATTTTTGCAAACCATAC 59.412 38.462 12.39 2.43 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 289 3.822192 CGCTCGGTCGATGTGGGA 61.822 66.667 0.00 0.00 0.00 4.37
304 321 0.879090 AATTTTTGTCCGCTCGGTCC 59.121 50.000 8.28 1.45 36.47 4.46
338 355 2.611225 TTTTTGCTTGATGGCGGTTT 57.389 40.000 0.00 0.00 34.52 3.27
443 464 9.698309 ATATATAAGTGGAATTGACGAACTGAG 57.302 33.333 0.00 0.00 0.00 3.35
512 534 5.817988 AGTAGCATGTATGTACAGTACACG 58.182 41.667 15.89 11.35 42.23 4.49
530 552 2.125147 TGGCATGGCACGAGTAGC 60.125 61.111 19.43 0.00 0.00 3.58
533 555 1.968017 CAACTGGCATGGCACGAGT 60.968 57.895 19.43 12.39 0.00 4.18
536 558 3.751246 CCCAACTGGCATGGCACG 61.751 66.667 19.43 16.30 36.58 5.34
537 559 2.283101 TCCCAACTGGCATGGCAC 60.283 61.111 19.43 0.00 36.58 5.01
538 560 2.283101 GTCCCAACTGGCATGGCA 60.283 61.111 21.97 21.97 36.58 4.92
539 561 3.070576 GGTCCCAACTGGCATGGC 61.071 66.667 13.29 13.29 36.58 4.40
540 562 1.679977 CTGGTCCCAACTGGCATGG 60.680 63.158 0.00 0.00 37.71 3.66
541 563 2.345760 GCTGGTCCCAACTGGCATG 61.346 63.158 0.00 0.00 0.00 4.06
542 564 2.036256 GCTGGTCCCAACTGGCAT 59.964 61.111 0.00 0.00 0.00 4.40
575 607 2.440065 TCCGGGCATGCCATTCAC 60.440 61.111 36.56 18.67 37.98 3.18
665 697 2.577112 CGTACTGCTGGTCGCTCG 60.577 66.667 0.00 0.00 40.11 5.03
761 1203 4.101448 CGGGAACAGGGCCCTCTG 62.101 72.222 25.77 16.55 43.72 3.35
764 1206 2.042261 ATACGGGAACAGGGCCCT 59.958 61.111 22.28 22.28 43.72 5.19
765 1207 2.070650 AGATACGGGAACAGGGCCC 61.071 63.158 16.46 16.46 42.41 5.80
766 1208 1.146263 CAGATACGGGAACAGGGCC 59.854 63.158 0.00 0.00 0.00 5.80
767 1209 0.252197 AACAGATACGGGAACAGGGC 59.748 55.000 0.00 0.00 0.00 5.19
781 1245 8.265055 AGATACGAAAAATCCCTATGAAACAGA 58.735 33.333 0.00 0.00 0.00 3.41
789 1253 5.512576 CGGGGAAGATACGAAAAATCCCTAT 60.513 44.000 16.03 0.00 44.81 2.57
969 1433 3.532155 CCGAAGCGGGGAGGAGAG 61.532 72.222 0.00 0.00 44.15 3.20
1381 1859 0.883833 AAATCTCAGCACCGGCAAAG 59.116 50.000 0.00 0.00 44.61 2.77
1505 1996 3.827898 CAGACGAGGAGGACCGGC 61.828 72.222 0.00 0.00 41.83 6.13
1507 1998 1.334243 GATAACAGACGAGGAGGACCG 59.666 57.143 0.00 0.00 41.83 4.79
1508 1999 2.359531 CAGATAACAGACGAGGAGGACC 59.640 54.545 0.00 0.00 0.00 4.46
1509 2000 2.223618 GCAGATAACAGACGAGGAGGAC 60.224 54.545 0.00 0.00 0.00 3.85
1511 2002 1.268794 CGCAGATAACAGACGAGGAGG 60.269 57.143 0.00 0.00 0.00 4.30
1512 2003 1.671328 TCGCAGATAACAGACGAGGAG 59.329 52.381 0.00 0.00 0.00 3.69
1513 2004 1.746470 TCGCAGATAACAGACGAGGA 58.254 50.000 0.00 0.00 0.00 3.71
1514 2005 2.033424 TGATCGCAGATAACAGACGAGG 59.967 50.000 0.00 0.00 45.12 4.63
1515 2006 3.002759 TCTGATCGCAGATAACAGACGAG 59.997 47.826 0.00 0.00 45.88 4.18
1516 2007 2.943033 TCTGATCGCAGATAACAGACGA 59.057 45.455 0.00 0.00 45.88 4.20
1517 2008 3.340337 TCTGATCGCAGATAACAGACG 57.660 47.619 0.00 0.00 45.88 4.18
1528 2019 1.519234 GCCGTGTGATCTGATCGCA 60.519 57.895 25.49 25.49 46.59 5.10
1529 2020 1.211818 GAGCCGTGTGATCTGATCGC 61.212 60.000 21.24 21.24 40.14 4.58
1530 2021 0.383590 AGAGCCGTGTGATCTGATCG 59.616 55.000 12.65 1.70 0.00 3.69
1531 2022 2.100584 AGAAGAGCCGTGTGATCTGATC 59.899 50.000 10.72 10.72 0.00 2.92
1532 2023 2.100584 GAGAAGAGCCGTGTGATCTGAT 59.899 50.000 0.00 0.00 0.00 2.90
1533 2024 1.474478 GAGAAGAGCCGTGTGATCTGA 59.526 52.381 0.00 0.00 0.00 3.27
1534 2025 1.470632 GGAGAAGAGCCGTGTGATCTG 60.471 57.143 0.00 0.00 0.00 2.90
1535 2026 0.820871 GGAGAAGAGCCGTGTGATCT 59.179 55.000 0.00 0.00 0.00 2.75
1548 2039 3.761311 AGTAGTAAACGCGAGGAGAAG 57.239 47.619 15.93 0.00 0.00 2.85
1587 2081 6.257630 GCTGCAAGTGAAGAAAATAAAACCAA 59.742 34.615 0.00 0.00 35.30 3.67
1588 2082 5.752955 GCTGCAAGTGAAGAAAATAAAACCA 59.247 36.000 0.00 0.00 35.30 3.67
1590 2084 6.074142 CCAGCTGCAAGTGAAGAAAATAAAAC 60.074 38.462 8.66 0.00 35.30 2.43
1591 2085 5.984926 CCAGCTGCAAGTGAAGAAAATAAAA 59.015 36.000 8.66 0.00 35.30 1.52
1592 2086 5.301551 TCCAGCTGCAAGTGAAGAAAATAAA 59.698 36.000 8.66 0.00 35.30 1.40
1593 2087 4.826733 TCCAGCTGCAAGTGAAGAAAATAA 59.173 37.500 8.66 0.00 35.30 1.40
1594 2088 4.397420 TCCAGCTGCAAGTGAAGAAAATA 58.603 39.130 8.66 0.00 35.30 1.40
1595 2089 3.225104 TCCAGCTGCAAGTGAAGAAAAT 58.775 40.909 8.66 0.00 35.30 1.82
1596 2090 2.620115 CTCCAGCTGCAAGTGAAGAAAA 59.380 45.455 8.66 0.00 35.30 2.29
1597 2091 2.158769 TCTCCAGCTGCAAGTGAAGAAA 60.159 45.455 8.66 0.00 35.30 2.52
1598 2092 1.417517 TCTCCAGCTGCAAGTGAAGAA 59.582 47.619 8.66 0.00 35.30 2.52
1599 2093 1.051008 TCTCCAGCTGCAAGTGAAGA 58.949 50.000 8.66 0.00 35.30 2.87
1600 2094 1.155042 GTCTCCAGCTGCAAGTGAAG 58.845 55.000 8.66 0.00 35.30 3.02
1601 2095 0.469494 TGTCTCCAGCTGCAAGTGAA 59.531 50.000 8.66 0.00 35.30 3.18
1602 2096 0.689055 ATGTCTCCAGCTGCAAGTGA 59.311 50.000 8.66 0.00 35.30 3.41
1729 2238 8.011844 ACTAGCAATACATACACTGATCTTCA 57.988 34.615 0.00 0.00 0.00 3.02
1762 2281 4.825422 AGAACGACACATCATGAGTTCAT 58.175 39.130 19.48 7.34 44.35 2.57
1764 2283 4.325741 CAGAGAACGACACATCATGAGTTC 59.674 45.833 12.85 12.85 43.34 3.01
1766 2285 3.842820 CAGAGAACGACACATCATGAGT 58.157 45.455 0.09 0.00 0.00 3.41
1767 2286 2.602211 GCAGAGAACGACACATCATGAG 59.398 50.000 0.09 0.00 0.00 2.90
1768 2287 2.029110 TGCAGAGAACGACACATCATGA 60.029 45.455 0.00 0.00 0.00 3.07
1769 2288 2.340337 TGCAGAGAACGACACATCATG 58.660 47.619 0.00 0.00 0.00 3.07
1770 2289 2.232208 TCTGCAGAGAACGACACATCAT 59.768 45.455 13.74 0.00 0.00 2.45
1771 2290 1.613437 TCTGCAGAGAACGACACATCA 59.387 47.619 13.74 0.00 0.00 3.07
1772 2291 2.257894 CTCTGCAGAGAACGACACATC 58.742 52.381 35.69 0.00 44.74 3.06
1773 2292 1.615883 ACTCTGCAGAGAACGACACAT 59.384 47.619 42.76 19.59 44.74 3.21
1858 2381 6.017275 GGGAGAGCAGTGATCAAAAGAATATG 60.017 42.308 11.60 0.00 0.00 1.78
1885 2409 1.492599 TGGAGGTGAACATTGTCCACA 59.507 47.619 8.49 0.00 32.21 4.17
1900 2424 0.322277 ACACAATGAGCTGCTGGAGG 60.322 55.000 7.01 0.00 0.00 4.30
1904 2428 1.241165 TGGAACACAATGAGCTGCTG 58.759 50.000 7.01 0.00 0.00 4.41
2072 2635 4.988540 TGCAGATACGTATTAGTGGAATGC 59.011 41.667 9.92 10.20 0.00 3.56
2110 2674 5.809001 ACAGAAGCATTGTTCAGAATCCTA 58.191 37.500 0.00 0.00 0.00 2.94
2154 2726 1.355066 CTTCTGCTCGAACGGCCTTC 61.355 60.000 0.00 2.88 0.00 3.46
2299 2871 0.549950 TGGAGTACCGTCTAGGGGAG 59.450 60.000 7.63 0.00 46.96 4.30
2398 2970 4.778143 GGGAGCCACGCCGACATT 62.778 66.667 0.00 0.00 0.00 2.71
2476 3048 7.602517 AAGGAAGAACGTTCATTCTATTCTG 57.397 36.000 28.78 0.00 37.99 3.02
2477 3049 8.622948 AAAAGGAAGAACGTTCATTCTATTCT 57.377 30.769 28.78 16.68 37.99 2.40
2478 3050 9.118236 CAAAAAGGAAGAACGTTCATTCTATTC 57.882 33.333 28.78 20.59 37.99 1.75
2479 3051 8.630037 ACAAAAAGGAAGAACGTTCATTCTATT 58.370 29.630 28.78 20.62 37.99 1.73
2480 3052 8.166422 ACAAAAAGGAAGAACGTTCATTCTAT 57.834 30.769 28.78 17.18 37.99 1.98
2481 3053 7.562454 ACAAAAAGGAAGAACGTTCATTCTA 57.438 32.000 28.78 0.00 37.99 2.10
2482 3054 6.451064 ACAAAAAGGAAGAACGTTCATTCT 57.549 33.333 28.78 19.19 40.78 2.40
2486 3058 4.218852 ACCAACAAAAAGGAAGAACGTTCA 59.781 37.500 28.78 0.00 0.00 3.18
2498 3070 4.082245 ACTCTTGTGTGGACCAACAAAAAG 60.082 41.667 17.37 17.76 31.72 2.27
2504 3076 2.639065 TGAACTCTTGTGTGGACCAAC 58.361 47.619 0.00 0.00 0.00 3.77
2508 3080 2.481952 GCTGATGAACTCTTGTGTGGAC 59.518 50.000 0.00 0.00 0.00 4.02
2511 3083 4.214758 TGAATGCTGATGAACTCTTGTGTG 59.785 41.667 0.00 0.00 0.00 3.82
2541 3113 6.293845 GCTTAGCGGAGAAAATGATGAATGAT 60.294 38.462 0.00 0.00 0.00 2.45
2543 3115 5.008415 AGCTTAGCGGAGAAAATGATGAATG 59.992 40.000 0.00 0.00 0.00 2.67
2544 3116 5.128919 AGCTTAGCGGAGAAAATGATGAAT 58.871 37.500 0.00 0.00 0.00 2.57
2548 3139 5.675538 ACTTAGCTTAGCGGAGAAAATGAT 58.324 37.500 14.71 0.00 0.00 2.45
2560 3151 5.404667 AGAACAACAACGTACTTAGCTTAGC 59.595 40.000 0.00 0.00 0.00 3.09
2562 3153 7.168637 CAGAAGAACAACAACGTACTTAGCTTA 59.831 37.037 0.00 0.00 0.00 3.09
2563 3154 6.018994 CAGAAGAACAACAACGTACTTAGCTT 60.019 38.462 0.00 0.00 0.00 3.74
2594 3185 4.072088 GTCGTGCGCCCTGAAACG 62.072 66.667 4.18 7.22 37.38 3.60
2630 3221 2.568623 ACCTTGCTTGACGGAAGAAT 57.431 45.000 0.89 0.00 43.07 2.40
2654 3245 1.140452 AGAGGTAGCGATCGAGTGGTA 59.860 52.381 21.57 0.00 0.00 3.25
2655 3246 0.107116 AGAGGTAGCGATCGAGTGGT 60.107 55.000 21.57 0.00 0.00 4.16
2656 3247 0.589223 GAGAGGTAGCGATCGAGTGG 59.411 60.000 21.57 0.00 0.00 4.00
2657 3248 0.233590 CGAGAGGTAGCGATCGAGTG 59.766 60.000 21.57 0.00 37.35 3.51
2658 3249 0.179078 ACGAGAGGTAGCGATCGAGT 60.179 55.000 21.57 7.53 38.50 4.18
2659 3250 0.938713 AACGAGAGGTAGCGATCGAG 59.061 55.000 21.57 0.25 38.50 4.04
2660 3251 1.376543 AAACGAGAGGTAGCGATCGA 58.623 50.000 21.57 0.00 38.50 3.59
2661 3252 1.846782 CAAAACGAGAGGTAGCGATCG 59.153 52.381 11.69 11.69 40.86 3.69
2662 3253 2.877335 ACAAAACGAGAGGTAGCGATC 58.123 47.619 0.00 0.00 0.00 3.69
2663 3254 3.314541 AACAAAACGAGAGGTAGCGAT 57.685 42.857 0.00 0.00 0.00 4.58
2667 3258 5.522460 TCTGTCAAAACAAAACGAGAGGTAG 59.478 40.000 0.00 0.00 34.24 3.18
2733 3360 2.203126 GGCTCCTGCGGATGAAGG 60.203 66.667 0.00 0.00 43.21 3.46
2755 3382 1.136611 GCAGCAAACTGTTCGTACGAG 60.137 52.381 18.64 9.72 46.30 4.18
2810 3437 1.065418 AGTTACCTCTTGGGATTGCCG 60.065 52.381 0.00 0.00 38.76 5.69
2863 3490 0.719465 CCGAAAGAAACCACGGATCG 59.281 55.000 0.00 0.00 46.94 3.69
2901 3528 5.929697 CACCACAGCAATATAGTATGGTG 57.070 43.478 6.14 6.14 46.86 4.17
2902 3529 4.412199 ACCACCACAGCAATATAGTATGGT 59.588 41.667 0.00 0.00 39.55 3.55
2903 3530 4.756642 CACCACCACAGCAATATAGTATGG 59.243 45.833 0.00 0.00 0.00 2.74
2904 3531 4.756642 CCACCACCACAGCAATATAGTATG 59.243 45.833 0.00 0.00 0.00 2.39
2916 3543 2.595463 CCTGCACCACCACCACAG 60.595 66.667 0.00 0.00 0.00 3.66
2918 3545 2.281761 CTCCTGCACCACCACCAC 60.282 66.667 0.00 0.00 0.00 4.16
2919 3546 2.447572 TCTCCTGCACCACCACCA 60.448 61.111 0.00 0.00 0.00 4.17
2920 3547 2.032681 GTCTCCTGCACCACCACC 59.967 66.667 0.00 0.00 0.00 4.61
2992 3619 1.034292 GGCTAAGCAGGCCCTGAAAG 61.034 60.000 16.85 8.94 43.49 2.62
3045 3672 3.590824 GCGCAATAGCCAACAGGT 58.409 55.556 0.30 0.00 37.52 4.00
3053 3680 4.634004 TGTGGTATATATTGGCGCAATAGC 59.366 41.667 10.83 7.00 39.28 2.97
3054 3681 5.220662 GCTGTGGTATATATTGGCGCAATAG 60.221 44.000 10.83 0.04 39.28 1.73
3056 3683 3.440173 GCTGTGGTATATATTGGCGCAAT 59.560 43.478 10.83 9.96 37.80 3.56
3059 3686 2.416547 CAGCTGTGGTATATATTGGCGC 59.583 50.000 5.25 0.00 0.00 6.53
3060 3687 3.925379 TCAGCTGTGGTATATATTGGCG 58.075 45.455 14.67 0.00 0.00 5.69
3061 3688 5.491070 TGATCAGCTGTGGTATATATTGGC 58.509 41.667 14.67 0.00 0.00 4.52
3189 3817 0.872881 ACGAAAACCTGACGACACCG 60.873 55.000 0.00 0.00 42.50 4.94
3190 3818 0.857287 GACGAAAACCTGACGACACC 59.143 55.000 0.00 0.00 0.00 4.16
3191 3819 0.857287 GGACGAAAACCTGACGACAC 59.143 55.000 0.00 0.00 0.00 3.67
3192 3820 0.249573 GGGACGAAAACCTGACGACA 60.250 55.000 0.00 0.00 0.00 4.35
3193 3821 0.249573 TGGGACGAAAACCTGACGAC 60.250 55.000 0.00 0.00 0.00 4.34
3194 3822 0.682852 ATGGGACGAAAACCTGACGA 59.317 50.000 0.00 0.00 0.00 4.20
3195 3823 0.796312 CATGGGACGAAAACCTGACG 59.204 55.000 0.00 0.00 0.00 4.35
3196 3824 1.165270 CCATGGGACGAAAACCTGAC 58.835 55.000 2.85 0.00 0.00 3.51
3197 3825 0.608035 GCCATGGGACGAAAACCTGA 60.608 55.000 15.13 0.00 0.00 3.86
3198 3826 1.883021 GCCATGGGACGAAAACCTG 59.117 57.895 15.13 0.00 0.00 4.00
3199 3827 1.674322 CGCCATGGGACGAAAACCT 60.674 57.895 15.13 0.00 0.00 3.50
3200 3828 2.696759 CCGCCATGGGACGAAAACC 61.697 63.158 15.13 0.00 0.00 3.27
3201 3829 1.520600 AACCGCCATGGGACGAAAAC 61.521 55.000 15.13 0.00 44.64 2.43
3202 3830 1.228306 AACCGCCATGGGACGAAAA 60.228 52.632 15.13 0.00 44.64 2.29
3203 3831 1.969064 CAACCGCCATGGGACGAAA 60.969 57.895 15.13 0.00 44.64 3.46
3204 3832 2.191786 ATCAACCGCCATGGGACGAA 62.192 55.000 15.13 0.00 44.64 3.85
3205 3833 2.587322 GATCAACCGCCATGGGACGA 62.587 60.000 15.13 0.59 44.64 4.20
3206 3834 2.124736 ATCAACCGCCATGGGACG 60.125 61.111 15.13 9.45 44.64 4.79
3207 3835 1.823899 GGATCAACCGCCATGGGAC 60.824 63.158 15.13 0.00 44.64 4.46
3208 3836 2.595095 GGATCAACCGCCATGGGA 59.405 61.111 15.13 1.44 44.64 4.37
3240 3868 1.966451 GACAGGAAACCCACCGCAG 60.966 63.158 0.00 0.00 0.00 5.18
3241 3869 2.112297 GACAGGAAACCCACCGCA 59.888 61.111 0.00 0.00 0.00 5.69
3242 3870 2.798148 ATCGACAGGAAACCCACCGC 62.798 60.000 0.00 0.00 0.00 5.68
3243 3871 1.019278 CATCGACAGGAAACCCACCG 61.019 60.000 0.00 0.00 0.00 4.94
3244 3872 1.305930 GCATCGACAGGAAACCCACC 61.306 60.000 0.00 0.00 0.00 4.61
3245 3873 0.321653 AGCATCGACAGGAAACCCAC 60.322 55.000 0.00 0.00 0.00 4.61
3246 3874 0.036388 GAGCATCGACAGGAAACCCA 60.036 55.000 0.00 0.00 0.00 4.51
3247 3875 0.744771 GGAGCATCGACAGGAAACCC 60.745 60.000 0.00 0.00 34.37 4.11
3248 3876 0.036388 TGGAGCATCGACAGGAAACC 60.036 55.000 0.00 0.00 34.37 3.27
3249 3877 1.363744 CTGGAGCATCGACAGGAAAC 58.636 55.000 0.00 0.00 34.37 2.78
3250 3878 0.391661 GCTGGAGCATCGACAGGAAA 60.392 55.000 2.60 0.00 41.59 3.13
3251 3879 1.219124 GCTGGAGCATCGACAGGAA 59.781 57.895 2.60 0.00 41.59 3.36
3252 3880 1.670949 GAGCTGGAGCATCGACAGGA 61.671 60.000 0.00 0.00 45.16 3.86
3253 3881 1.227205 GAGCTGGAGCATCGACAGG 60.227 63.158 0.00 0.00 45.16 4.00
3254 3882 1.588403 CGAGCTGGAGCATCGACAG 60.588 63.158 12.34 0.00 45.16 3.51
3255 3883 2.491621 CGAGCTGGAGCATCGACA 59.508 61.111 12.34 0.00 45.16 4.35
3256 3884 2.959071 GCGAGCTGGAGCATCGAC 60.959 66.667 18.48 9.91 45.16 4.20
3257 3885 3.131196 GAGCGAGCTGGAGCATCGA 62.131 63.158 18.48 0.00 45.16 3.59
3258 3886 2.657944 GAGCGAGCTGGAGCATCG 60.658 66.667 0.84 13.00 45.16 3.84
3259 3887 2.280052 GGAGCGAGCTGGAGCATC 60.280 66.667 0.84 0.00 45.16 3.91
3260 3888 2.763292 AGGAGCGAGCTGGAGCAT 60.763 61.111 0.84 0.00 45.16 3.79
3261 3889 3.456365 GAGGAGCGAGCTGGAGCA 61.456 66.667 0.84 0.00 45.16 4.26
3262 3890 4.219999 GGAGGAGCGAGCTGGAGC 62.220 72.222 0.84 0.00 42.49 4.70
3263 3891 3.535962 GGGAGGAGCGAGCTGGAG 61.536 72.222 0.84 0.00 0.00 3.86
3266 3894 2.585791 GAAAGGGGAGGAGCGAGCTG 62.586 65.000 0.84 0.00 0.00 4.24
3267 3895 2.284995 AAAGGGGAGGAGCGAGCT 60.285 61.111 0.00 0.00 0.00 4.09
3268 3896 2.188207 GAAAGGGGAGGAGCGAGC 59.812 66.667 0.00 0.00 0.00 5.03
3269 3897 1.261238 ACTGAAAGGGGAGGAGCGAG 61.261 60.000 0.00 0.00 39.30 5.03
3270 3898 1.229209 ACTGAAAGGGGAGGAGCGA 60.229 57.895 0.00 0.00 39.30 4.93
3271 3899 1.219393 GACTGAAAGGGGAGGAGCG 59.781 63.158 0.00 0.00 39.30 5.03
3272 3900 0.988063 AAGACTGAAAGGGGAGGAGC 59.012 55.000 0.00 0.00 39.30 4.70
3273 3901 5.443230 AAATAAGACTGAAAGGGGAGGAG 57.557 43.478 0.00 0.00 39.30 3.69
3274 3902 5.516591 CCAAAATAAGACTGAAAGGGGAGGA 60.517 44.000 0.00 0.00 39.30 3.71
3275 3903 4.706962 CCAAAATAAGACTGAAAGGGGAGG 59.293 45.833 0.00 0.00 39.30 4.30
3276 3904 4.706962 CCCAAAATAAGACTGAAAGGGGAG 59.293 45.833 0.00 0.00 39.30 4.30
3277 3905 4.107311 ACCCAAAATAAGACTGAAAGGGGA 59.893 41.667 0.00 0.00 39.30 4.81
3278 3906 4.416516 ACCCAAAATAAGACTGAAAGGGG 58.583 43.478 0.00 0.00 39.30 4.79
3279 3907 5.325239 AGACCCAAAATAAGACTGAAAGGG 58.675 41.667 0.00 0.00 39.30 3.95
3280 3908 5.122396 CGAGACCCAAAATAAGACTGAAAGG 59.878 44.000 0.00 0.00 39.30 3.11
3281 3909 5.701290 ACGAGACCCAAAATAAGACTGAAAG 59.299 40.000 0.00 0.00 42.29 2.62
3282 3910 5.468746 CACGAGACCCAAAATAAGACTGAAA 59.531 40.000 0.00 0.00 0.00 2.69
3283 3911 4.994852 CACGAGACCCAAAATAAGACTGAA 59.005 41.667 0.00 0.00 0.00 3.02
3284 3912 4.562757 CCACGAGACCCAAAATAAGACTGA 60.563 45.833 0.00 0.00 0.00 3.41
3285 3913 3.684788 CCACGAGACCCAAAATAAGACTG 59.315 47.826 0.00 0.00 0.00 3.51
3286 3914 3.326880 ACCACGAGACCCAAAATAAGACT 59.673 43.478 0.00 0.00 0.00 3.24
3287 3915 3.671716 ACCACGAGACCCAAAATAAGAC 58.328 45.455 0.00 0.00 0.00 3.01
3288 3916 3.615592 CGACCACGAGACCCAAAATAAGA 60.616 47.826 0.00 0.00 42.66 2.10
3289 3917 2.671396 CGACCACGAGACCCAAAATAAG 59.329 50.000 0.00 0.00 42.66 1.73
3290 3918 2.037511 ACGACCACGAGACCCAAAATAA 59.962 45.455 0.00 0.00 42.66 1.40
3291 3919 1.619827 ACGACCACGAGACCCAAAATA 59.380 47.619 0.00 0.00 42.66 1.40
3292 3920 0.395312 ACGACCACGAGACCCAAAAT 59.605 50.000 0.00 0.00 42.66 1.82
3293 3921 0.178533 AACGACCACGAGACCCAAAA 59.821 50.000 0.00 0.00 42.66 2.44
3294 3922 0.178533 AAACGACCACGAGACCCAAA 59.821 50.000 0.00 0.00 42.66 3.28
3295 3923 0.178533 AAAACGACCACGAGACCCAA 59.821 50.000 0.00 0.00 42.66 4.12
3296 3924 1.039068 TAAAACGACCACGAGACCCA 58.961 50.000 0.00 0.00 42.66 4.51
3297 3925 2.375173 ATAAAACGACCACGAGACCC 57.625 50.000 0.00 0.00 42.66 4.46
3298 3926 4.460505 CAAAATAAAACGACCACGAGACC 58.539 43.478 0.00 0.00 42.66 3.85
3299 3927 4.460505 CCAAAATAAAACGACCACGAGAC 58.539 43.478 0.00 0.00 42.66 3.36
3300 3928 3.499157 CCCAAAATAAAACGACCACGAGA 59.501 43.478 0.00 0.00 42.66 4.04
3301 3929 3.251487 ACCCAAAATAAAACGACCACGAG 59.749 43.478 0.00 0.00 42.66 4.18
3302 3930 3.212685 ACCCAAAATAAAACGACCACGA 58.787 40.909 0.00 0.00 42.66 4.35
3303 3931 3.629438 ACCCAAAATAAAACGACCACG 57.371 42.857 0.00 0.00 45.75 4.94
3304 3932 6.256912 TCATACCCAAAATAAAACGACCAC 57.743 37.500 0.00 0.00 0.00 4.16
3305 3933 7.067251 GGTATCATACCCAAAATAAAACGACCA 59.933 37.037 1.80 0.00 43.18 4.02
3306 3934 7.420002 GGTATCATACCCAAAATAAAACGACC 58.580 38.462 1.80 0.00 43.18 4.79
3322 3950 7.391275 GGTCCAGTAGTTCTCTAGGTATCATAC 59.609 44.444 0.00 0.00 0.00 2.39
3323 3951 7.073343 TGGTCCAGTAGTTCTCTAGGTATCATA 59.927 40.741 0.00 0.00 0.00 2.15
3324 3952 6.126156 TGGTCCAGTAGTTCTCTAGGTATCAT 60.126 42.308 0.00 0.00 0.00 2.45
3325 3953 5.193124 TGGTCCAGTAGTTCTCTAGGTATCA 59.807 44.000 0.00 0.00 0.00 2.15
3326 3954 5.692928 TGGTCCAGTAGTTCTCTAGGTATC 58.307 45.833 0.00 0.00 0.00 2.24
3327 3955 5.728937 TGGTCCAGTAGTTCTCTAGGTAT 57.271 43.478 0.00 0.00 0.00 2.73
3328 3956 5.044328 ACATGGTCCAGTAGTTCTCTAGGTA 60.044 44.000 0.00 0.00 0.00 3.08
3329 3957 4.264442 ACATGGTCCAGTAGTTCTCTAGGT 60.264 45.833 0.00 0.00 0.00 3.08
3330 3958 4.282496 ACATGGTCCAGTAGTTCTCTAGG 58.718 47.826 0.00 0.00 0.00 3.02
3331 3959 7.589958 AATACATGGTCCAGTAGTTCTCTAG 57.410 40.000 0.00 0.00 0.00 2.43
3332 3960 7.069578 GGAAATACATGGTCCAGTAGTTCTCTA 59.930 40.741 24.57 4.01 42.02 2.43
3333 3961 6.127026 GGAAATACATGGTCCAGTAGTTCTCT 60.127 42.308 24.57 6.29 42.02 3.10
3334 3962 6.049790 GGAAATACATGGTCCAGTAGTTCTC 58.950 44.000 24.57 17.41 42.02 2.87
3335 3963 5.395324 CGGAAATACATGGTCCAGTAGTTCT 60.395 44.000 24.57 7.00 42.02 3.01
3336 3964 4.809426 CGGAAATACATGGTCCAGTAGTTC 59.191 45.833 21.16 21.16 41.78 3.01
3337 3965 4.224370 ACGGAAATACATGGTCCAGTAGTT 59.776 41.667 11.49 11.49 32.00 2.24
3338 3966 3.773119 ACGGAAATACATGGTCCAGTAGT 59.227 43.478 0.00 0.00 0.00 2.73
3339 3967 4.402056 ACGGAAATACATGGTCCAGTAG 57.598 45.455 0.00 0.00 0.00 2.57
3340 3968 4.223255 TCAACGGAAATACATGGTCCAGTA 59.777 41.667 0.00 0.81 0.00 2.74
3341 3969 3.008594 TCAACGGAAATACATGGTCCAGT 59.991 43.478 0.00 0.00 0.00 4.00
3342 3970 3.605634 TCAACGGAAATACATGGTCCAG 58.394 45.455 0.00 0.00 0.00 3.86
3343 3971 3.704800 TCAACGGAAATACATGGTCCA 57.295 42.857 0.00 0.00 0.00 4.02
3344 3972 4.733523 GCAATCAACGGAAATACATGGTCC 60.734 45.833 0.00 0.00 0.00 4.46
3345 3973 4.142491 TGCAATCAACGGAAATACATGGTC 60.142 41.667 0.00 0.00 0.00 4.02
3346 3974 3.761218 TGCAATCAACGGAAATACATGGT 59.239 39.130 0.00 0.00 0.00 3.55
3347 3975 4.368874 TGCAATCAACGGAAATACATGG 57.631 40.909 0.00 0.00 0.00 3.66
3348 3976 6.702972 TTTTGCAATCAACGGAAATACATG 57.297 33.333 0.00 0.00 30.75 3.21
3349 3977 7.903995 AATTTTGCAATCAACGGAAATACAT 57.096 28.000 0.00 0.00 30.75 2.29
3350 3978 8.818141 TTAATTTTGCAATCAACGGAAATACA 57.182 26.923 0.00 0.00 30.75 2.29
3351 3979 9.687717 CATTAATTTTGCAATCAACGGAAATAC 57.312 29.630 0.00 0.00 30.75 1.89
3352 3980 8.877779 CCATTAATTTTGCAATCAACGGAAATA 58.122 29.630 0.00 0.00 30.75 1.40
3353 3981 7.605691 TCCATTAATTTTGCAATCAACGGAAAT 59.394 29.630 0.00 0.00 30.75 2.17
3354 3982 6.931281 TCCATTAATTTTGCAATCAACGGAAA 59.069 30.769 0.00 0.00 30.75 3.13
3355 3983 6.459066 TCCATTAATTTTGCAATCAACGGAA 58.541 32.000 0.00 0.00 30.75 4.30
3356 3984 6.030548 TCCATTAATTTTGCAATCAACGGA 57.969 33.333 0.00 0.00 30.75 4.69
3357 3985 6.718454 TTCCATTAATTTTGCAATCAACGG 57.282 33.333 0.00 0.00 30.75 4.44
3358 3986 7.235777 CCTTTCCATTAATTTTGCAATCAACG 58.764 34.615 0.00 0.00 30.75 4.10
3359 3987 7.361971 CCCCTTTCCATTAATTTTGCAATCAAC 60.362 37.037 0.00 0.00 30.75 3.18
3360 3988 6.658391 CCCCTTTCCATTAATTTTGCAATCAA 59.342 34.615 0.00 0.00 0.00 2.57
3361 3989 6.179040 CCCCTTTCCATTAATTTTGCAATCA 58.821 36.000 0.00 0.00 0.00 2.57
3362 3990 6.093909 CACCCCTTTCCATTAATTTTGCAATC 59.906 38.462 0.00 0.00 0.00 2.67
3363 3991 5.945191 CACCCCTTTCCATTAATTTTGCAAT 59.055 36.000 0.00 0.00 0.00 3.56
3364 3992 5.312079 CACCCCTTTCCATTAATTTTGCAA 58.688 37.500 0.00 0.00 0.00 4.08
3365 3993 4.805609 GCACCCCTTTCCATTAATTTTGCA 60.806 41.667 0.00 0.00 0.00 4.08
3366 3994 3.689161 GCACCCCTTTCCATTAATTTTGC 59.311 43.478 0.00 0.00 0.00 3.68
3367 3995 3.932089 CGCACCCCTTTCCATTAATTTTG 59.068 43.478 0.00 0.00 0.00 2.44
3368 3996 3.835395 TCGCACCCCTTTCCATTAATTTT 59.165 39.130 0.00 0.00 0.00 1.82
3369 3997 3.436243 TCGCACCCCTTTCCATTAATTT 58.564 40.909 0.00 0.00 0.00 1.82
3370 3998 3.023832 CTCGCACCCCTTTCCATTAATT 58.976 45.455 0.00 0.00 0.00 1.40
3371 3999 2.654863 CTCGCACCCCTTTCCATTAAT 58.345 47.619 0.00 0.00 0.00 1.40
3372 4000 1.953311 GCTCGCACCCCTTTCCATTAA 60.953 52.381 0.00 0.00 0.00 1.40
3373 4001 0.393808 GCTCGCACCCCTTTCCATTA 60.394 55.000 0.00 0.00 0.00 1.90
3374 4002 1.678970 GCTCGCACCCCTTTCCATT 60.679 57.895 0.00 0.00 0.00 3.16
3375 4003 2.044946 GCTCGCACCCCTTTCCAT 60.045 61.111 0.00 0.00 0.00 3.41
3376 4004 4.344865 GGCTCGCACCCCTTTCCA 62.345 66.667 0.00 0.00 0.00 3.53
3377 4005 4.035102 AGGCTCGCACCCCTTTCC 62.035 66.667 0.00 0.00 0.00 3.13
3378 4006 2.747855 CAGGCTCGCACCCCTTTC 60.748 66.667 0.00 0.00 0.00 2.62
3379 4007 4.351054 CCAGGCTCGCACCCCTTT 62.351 66.667 0.00 0.00 0.00 3.11
3384 4012 3.842925 TTCCAACCAGGCTCGCACC 62.843 63.158 0.00 0.00 37.29 5.01
3385 4013 1.452145 TTTTCCAACCAGGCTCGCAC 61.452 55.000 0.00 0.00 37.29 5.34
3386 4014 0.753479 TTTTTCCAACCAGGCTCGCA 60.753 50.000 0.00 0.00 37.29 5.10
3387 4015 2.037871 TTTTTCCAACCAGGCTCGC 58.962 52.632 0.00 0.00 37.29 5.03
3407 4035 8.021396 GCAGTTCTTCGTATGGTAAAGATTTTT 58.979 33.333 0.00 0.00 0.00 1.94
3408 4036 7.174253 TGCAGTTCTTCGTATGGTAAAGATTTT 59.826 33.333 0.00 0.00 0.00 1.82
3409 4037 6.653320 TGCAGTTCTTCGTATGGTAAAGATTT 59.347 34.615 0.00 0.00 0.00 2.17
3410 4038 6.092259 GTGCAGTTCTTCGTATGGTAAAGATT 59.908 38.462 0.00 0.00 0.00 2.40
3411 4039 5.581085 GTGCAGTTCTTCGTATGGTAAAGAT 59.419 40.000 0.00 0.00 0.00 2.40
3412 4040 4.927425 GTGCAGTTCTTCGTATGGTAAAGA 59.073 41.667 0.00 0.00 0.00 2.52
3413 4041 4.201589 CGTGCAGTTCTTCGTATGGTAAAG 60.202 45.833 0.00 0.00 0.00 1.85
3414 4042 3.676172 CGTGCAGTTCTTCGTATGGTAAA 59.324 43.478 0.00 0.00 0.00 2.01
3415 4043 3.247442 CGTGCAGTTCTTCGTATGGTAA 58.753 45.455 0.00 0.00 0.00 2.85
3416 4044 2.871133 CGTGCAGTTCTTCGTATGGTA 58.129 47.619 0.00 0.00 0.00 3.25
3417 4045 1.710013 CGTGCAGTTCTTCGTATGGT 58.290 50.000 0.00 0.00 0.00 3.55
3418 4046 0.370273 GCGTGCAGTTCTTCGTATGG 59.630 55.000 0.00 0.00 0.00 2.74
3419 4047 0.023732 CGCGTGCAGTTCTTCGTATG 59.976 55.000 0.00 0.00 0.00 2.39
3420 4048 0.388134 ACGCGTGCAGTTCTTCGTAT 60.388 50.000 12.93 0.00 0.00 3.06
3421 4049 0.238025 TACGCGTGCAGTTCTTCGTA 59.762 50.000 24.59 0.00 0.00 3.43
3440 4068 3.057526 GCTGCTCCAGGATTTACGTTTTT 60.058 43.478 0.00 0.00 31.21 1.94
3444 4072 0.905357 AGCTGCTCCAGGATTTACGT 59.095 50.000 0.00 0.00 31.21 3.57
3445 4073 1.137872 AGAGCTGCTCCAGGATTTACG 59.862 52.381 25.09 0.00 31.21 3.18
3446 4074 2.998316 AGAGCTGCTCCAGGATTTAC 57.002 50.000 25.09 0.00 31.21 2.01
3447 4075 3.110705 AGAAGAGCTGCTCCAGGATTTA 58.889 45.455 25.09 0.00 31.21 1.40
3450 4078 0.831966 CAGAAGAGCTGCTCCAGGAT 59.168 55.000 25.09 4.20 37.90 3.24
3451 4079 2.284824 CAGAAGAGCTGCTCCAGGA 58.715 57.895 25.09 0.00 37.90 3.86
3635 4309 2.161609 GTGAAGCCGGTATTGTTCTTGG 59.838 50.000 1.90 0.00 0.00 3.61
3668 4346 4.678287 TCTGCTTTTAGTTACGACGACTTG 59.322 41.667 0.00 0.00 0.00 3.16
3671 4349 4.490479 GCATCTGCTTTTAGTTACGACGAC 60.490 45.833 0.00 0.00 38.21 4.34
3672 4350 3.611113 GCATCTGCTTTTAGTTACGACGA 59.389 43.478 0.00 0.00 38.21 4.20
3673 4351 3.241995 GGCATCTGCTTTTAGTTACGACG 60.242 47.826 1.70 0.00 41.70 5.12
3730 4408 4.321304 CCACTGACACTGAGATAGTCGTTT 60.321 45.833 0.00 0.00 37.60 3.60
3992 4670 4.809496 CAAGCTCATGGCCGCCCT 62.809 66.667 7.03 0.00 43.05 5.19
3997 4675 1.734137 CAGATGCAAGCTCATGGCC 59.266 57.895 0.00 0.00 43.05 5.36
4073 4751 3.130516 TGAACACGGTATGGTTTGCAAAA 59.869 39.130 14.67 0.00 0.00 2.44
4087 4765 6.019559 CACAATACTACTCATCATGAACACGG 60.020 42.308 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.