Multiple sequence alignment - TraesCS3D01G303200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G303200 chr3D 100.000 5745 0 0 1 5745 418213889 418219633 0.000000e+00 10610.0
1 TraesCS3D01G303200 chr3D 98.427 572 6 2 5176 5745 75151165 75151735 0.000000e+00 1003.0
2 TraesCS3D01G303200 chr3D 91.731 387 22 8 2053 2435 283311635 283311255 3.940000e-146 529.0
3 TraesCS3D01G303200 chr3D 86.998 423 37 10 2054 2476 115034534 115034938 1.460000e-125 460.0
4 TraesCS3D01G303200 chr3D 78.042 337 46 11 2052 2385 513997377 513997066 2.730000e-43 187.0
5 TraesCS3D01G303200 chr3D 75.561 446 52 24 11 399 535448107 535447662 3.560000e-37 167.0
6 TraesCS3D01G303200 chr3B 94.620 3160 112 20 447 3573 544544220 544547354 0.000000e+00 4841.0
7 TraesCS3D01G303200 chr3B 87.753 988 89 7 3573 4534 697145744 697146725 0.000000e+00 1125.0
8 TraesCS3D01G303200 chr3B 97.040 642 13 2 4536 5171 544547348 544547989 0.000000e+00 1075.0
9 TraesCS3D01G303200 chr3B 76.386 487 61 27 2 436 805311976 805312460 4.510000e-51 213.0
10 TraesCS3D01G303200 chr1D 98.027 963 15 2 3574 4534 11047738 11046778 0.000000e+00 1670.0
11 TraesCS3D01G303200 chr1D 98.054 668 12 1 3574 4240 453703831 453704498 0.000000e+00 1160.0
12 TraesCS3D01G303200 chr1D 96.713 578 15 1 5172 5745 435733088 435732511 0.000000e+00 959.0
13 TraesCS3D01G303200 chr1D 95.410 610 11 2 3574 4182 11009941 11009348 0.000000e+00 955.0
14 TraesCS3D01G303200 chr1D 97.024 504 11 3 3574 4075 11095275 11094774 0.000000e+00 845.0
15 TraesCS3D01G303200 chr1D 97.863 468 8 1 4067 4534 11092759 11092294 0.000000e+00 808.0
16 TraesCS3D01G303200 chr1D 84.601 552 64 15 3988 4534 3588098 3588633 3.940000e-146 529.0
17 TraesCS3D01G303200 chr1D 97.735 309 2 1 4226 4534 453706906 453707209 1.420000e-145 527.0
18 TraesCS3D01G303200 chr1D 78.636 440 64 14 2673 3110 159985559 159985148 1.230000e-66 265.0
19 TraesCS3D01G303200 chr1D 91.566 166 12 2 4341 4506 451052314 451052477 1.610000e-55 228.0
20 TraesCS3D01G303200 chr1D 80.233 86 13 2 21 103 172690836 172690752 1.730000e-05 62.1
21 TraesCS3D01G303200 chr3A 93.984 1097 63 3 2477 3570 532857344 532856248 0.000000e+00 1657.0
22 TraesCS3D01G303200 chr3A 88.988 781 48 17 459 1229 532858936 532858184 0.000000e+00 931.0
23 TraesCS3D01G303200 chr3A 91.508 577 34 9 4536 5100 532856253 532855680 0.000000e+00 780.0
24 TraesCS3D01G303200 chr3A 88.752 569 23 14 1255 1800 532858185 532857635 0.000000e+00 658.0
25 TraesCS3D01G303200 chr3A 93.233 266 6 3 1787 2052 532857588 532857335 1.170000e-101 381.0
26 TraesCS3D01G303200 chr3A 83.000 100 16 1 132 230 695775032 695775131 7.930000e-14 89.8
27 TraesCS3D01G303200 chr7D 97.590 581 12 1 5165 5745 10039493 10040071 0.000000e+00 994.0
28 TraesCS3D01G303200 chr7D 97.569 576 12 1 5172 5745 563550369 563549794 0.000000e+00 985.0
29 TraesCS3D01G303200 chr7D 97.569 576 10 3 5172 5745 1946163 1946736 0.000000e+00 983.0
30 TraesCS3D01G303200 chr7D 97.069 580 11 3 5172 5745 394327862 394327283 0.000000e+00 972.0
31 TraesCS3D01G303200 chr7D 95.296 574 23 3 5172 5745 16671574 16671005 0.000000e+00 907.0
32 TraesCS3D01G303200 chr5D 97.909 574 12 0 5172 5745 170398967 170398394 0.000000e+00 994.0
33 TraesCS3D01G303200 chr5D 97.400 577 13 1 5169 5745 264623398 264623972 0.000000e+00 981.0
34 TraesCS3D01G303200 chr5D 90.979 388 24 5 2053 2435 423970414 423970795 3.970000e-141 512.0
35 TraesCS3D01G303200 chr5D 88.318 428 28 10 2053 2476 509543086 509542677 1.440000e-135 494.0
36 TraesCS3D01G303200 chr5D 84.848 429 35 11 2053 2476 281011458 281011055 6.930000e-109 405.0
37 TraesCS3D01G303200 chr5D 100.000 28 0 0 5065 5092 101702368 101702395 1.000000e-02 52.8
38 TraesCS3D01G303200 chrUn 88.919 740 51 13 3574 4284 234163455 234164192 0.000000e+00 883.0
39 TraesCS3D01G303200 chrUn 92.827 237 11 5 4299 4531 234164172 234164406 7.130000e-89 339.0
40 TraesCS3D01G303200 chr6B 88.441 744 50 16 3574 4284 41257103 41257843 0.000000e+00 865.0
41 TraesCS3D01G303200 chr6B 88.982 717 53 14 3574 4284 41323346 41324042 0.000000e+00 863.0
42 TraesCS3D01G303200 chr6B 94.538 238 9 4 4299 4534 41324022 41324257 1.180000e-96 364.0
43 TraesCS3D01G303200 chr6B 93.617 235 11 4 4299 4531 41257823 41258055 1.180000e-91 348.0
44 TraesCS3D01G303200 chr1B 89.003 682 68 6 3755 4436 681452313 681451639 0.000000e+00 837.0
45 TraesCS3D01G303200 chr1B 93.333 45 1 2 4299 4342 681451805 681451762 1.340000e-06 65.8
46 TraesCS3D01G303200 chr7A 89.635 521 27 10 3574 4069 103134804 103135322 6.280000e-179 638.0
47 TraesCS3D01G303200 chr7A 95.122 41 1 1 4299 4338 732389046 732389086 4.810000e-06 63.9
48 TraesCS3D01G303200 chr2B 90.022 451 25 11 2031 2477 415996846 415997280 3.000000e-157 566.0
49 TraesCS3D01G303200 chr2B 90.206 388 30 8 2053 2435 43228725 43229109 3.090000e-137 499.0
50 TraesCS3D01G303200 chr6D 85.000 560 60 18 3988 4541 122981493 122982034 1.090000e-151 547.0
51 TraesCS3D01G303200 chr6D 90.051 392 27 7 2048 2435 138366155 138366538 1.110000e-136 497.0
52 TraesCS3D01G303200 chr6D 88.378 413 21 5 3568 3953 122981079 122981491 6.740000e-129 472.0
53 TraesCS3D01G303200 chr6D 79.634 437 59 14 2673 3107 86851855 86852263 2.620000e-73 287.0
54 TraesCS3D01G303200 chr6D 89.423 104 9 2 4299 4401 122981766 122981868 4.670000e-26 130.0
55 TraesCS3D01G303200 chr6D 85.714 105 11 4 76 178 114248867 114248765 2.190000e-19 108.0
56 TraesCS3D01G303200 chr7B 91.237 388 26 4 2053 2435 181408296 181407912 6.600000e-144 521.0
57 TraesCS3D01G303200 chr7B 88.050 318 17 7 2162 2476 607933112 607933411 1.970000e-94 357.0
58 TraesCS3D01G303200 chr2D 90.404 396 27 8 2044 2435 56324332 56323944 1.430000e-140 510.0
59 TraesCS3D01G303200 chr2D 88.060 67 7 1 142 208 129969748 129969813 1.720000e-10 78.7
60 TraesCS3D01G303200 chr5B 90.625 384 24 7 2053 2435 554639966 554639594 3.090000e-137 499.0
61 TraesCS3D01G303200 chr5B 85.532 235 27 6 2 234 297062825 297063054 7.440000e-59 239.0
62 TraesCS3D01G303200 chr5B 79.661 118 21 2 76 192 545291846 545291961 1.330000e-11 82.4
63 TraesCS3D01G303200 chr4A 85.321 436 36 11 2053 2477 459671110 459671528 5.320000e-115 425.0
64 TraesCS3D01G303200 chr4A 84.979 233 32 3 2 233 502866125 502866355 3.460000e-57 233.0
65 TraesCS3D01G303200 chr4B 83.908 435 28 15 2052 2477 648508035 648507634 1.510000e-100 377.0
66 TraesCS3D01G303200 chr4D 77.347 490 57 24 2 444 477557735 477558217 2.070000e-59 241.0
67 TraesCS3D01G303200 chr5A 79.245 159 27 3 76 234 335488624 335488472 7.870000e-19 106.0
68 TraesCS3D01G303200 chr5A 100.000 28 0 0 5065 5092 98447716 98447689 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G303200 chr3D 418213889 418219633 5744 False 10610.0 10610 100.000000 1 5745 1 chr3D.!!$F3 5744
1 TraesCS3D01G303200 chr3D 75151165 75151735 570 False 1003.0 1003 98.427000 5176 5745 1 chr3D.!!$F1 569
2 TraesCS3D01G303200 chr3B 544544220 544547989 3769 False 2958.0 4841 95.830000 447 5171 2 chr3B.!!$F3 4724
3 TraesCS3D01G303200 chr3B 697145744 697146725 981 False 1125.0 1125 87.753000 3573 4534 1 chr3B.!!$F1 961
4 TraesCS3D01G303200 chr1D 11046778 11047738 960 True 1670.0 1670 98.027000 3574 4534 1 chr1D.!!$R2 960
5 TraesCS3D01G303200 chr1D 435732511 435733088 577 True 959.0 959 96.713000 5172 5745 1 chr1D.!!$R5 573
6 TraesCS3D01G303200 chr1D 11009348 11009941 593 True 955.0 955 95.410000 3574 4182 1 chr1D.!!$R1 608
7 TraesCS3D01G303200 chr1D 453703831 453707209 3378 False 843.5 1160 97.894500 3574 4534 2 chr1D.!!$F3 960
8 TraesCS3D01G303200 chr1D 11092294 11095275 2981 True 826.5 845 97.443500 3574 4534 2 chr1D.!!$R6 960
9 TraesCS3D01G303200 chr1D 3588098 3588633 535 False 529.0 529 84.601000 3988 4534 1 chr1D.!!$F1 546
10 TraesCS3D01G303200 chr3A 532855680 532858936 3256 True 881.4 1657 91.293000 459 5100 5 chr3A.!!$R1 4641
11 TraesCS3D01G303200 chr7D 10039493 10040071 578 False 994.0 994 97.590000 5165 5745 1 chr7D.!!$F2 580
12 TraesCS3D01G303200 chr7D 563549794 563550369 575 True 985.0 985 97.569000 5172 5745 1 chr7D.!!$R3 573
13 TraesCS3D01G303200 chr7D 1946163 1946736 573 False 983.0 983 97.569000 5172 5745 1 chr7D.!!$F1 573
14 TraesCS3D01G303200 chr7D 394327283 394327862 579 True 972.0 972 97.069000 5172 5745 1 chr7D.!!$R2 573
15 TraesCS3D01G303200 chr7D 16671005 16671574 569 True 907.0 907 95.296000 5172 5745 1 chr7D.!!$R1 573
16 TraesCS3D01G303200 chr5D 170398394 170398967 573 True 994.0 994 97.909000 5172 5745 1 chr5D.!!$R1 573
17 TraesCS3D01G303200 chr5D 264623398 264623972 574 False 981.0 981 97.400000 5169 5745 1 chr5D.!!$F2 576
18 TraesCS3D01G303200 chrUn 234163455 234164406 951 False 611.0 883 90.873000 3574 4531 2 chrUn.!!$F1 957
19 TraesCS3D01G303200 chr6B 41323346 41324257 911 False 613.5 863 91.760000 3574 4534 2 chr6B.!!$F2 960
20 TraesCS3D01G303200 chr6B 41257103 41258055 952 False 606.5 865 91.029000 3574 4531 2 chr6B.!!$F1 957
21 TraesCS3D01G303200 chr1B 681451639 681452313 674 True 451.4 837 91.168000 3755 4436 2 chr1B.!!$R1 681
22 TraesCS3D01G303200 chr7A 103134804 103135322 518 False 638.0 638 89.635000 3574 4069 1 chr7A.!!$F1 495
23 TraesCS3D01G303200 chr6D 122981079 122982034 955 False 383.0 547 87.600333 3568 4541 3 chr6D.!!$F3 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 576 0.034896 AGCTCACCCCACGTTTACAG 59.965 55.000 0.00 0.00 0.00 2.74 F
975 989 0.184933 TTGCCATGGTACTATGCCCC 59.815 55.000 14.67 5.05 0.00 5.80 F
1905 2003 1.376037 CCTTGTTGGCTCCCTCGTC 60.376 63.158 0.00 0.00 0.00 4.20 F
2303 2404 2.007608 GGACAGTATTTCCTTCGCCAC 58.992 52.381 0.00 0.00 0.00 5.01 F
3486 3591 1.078918 CGCCAGCAGTCCTGATTCA 60.079 57.895 0.00 0.00 44.64 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2536 0.043485 TGCTCCACACCCCTATACCA 59.957 55.000 0.00 0.00 0.00 3.25 R
2433 2537 0.468648 GTGCTCCACACCCCTATACC 59.531 60.000 0.00 0.00 44.02 2.73 R
3024 3128 0.473755 ATGCCTCCAGTTGTGTCACA 59.526 50.000 0.18 0.18 0.00 3.58 R
3994 4133 1.073763 CACACATGGAGAAAGGGGTCA 59.926 52.381 0.00 0.00 0.00 4.02 R
5207 9908 1.807742 CTGTTTGATTCGGGCGGTTTA 59.192 47.619 0.00 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.735326 ACATTTCACTGTTAGGGAGTAGTAT 57.265 36.000 0.00 0.00 0.00 2.12
26 27 7.556844 ACATTTCACTGTTAGGGAGTAGTATG 58.443 38.462 0.00 0.00 0.00 2.39
27 28 6.540438 TTTCACTGTTAGGGAGTAGTATGG 57.460 41.667 0.00 0.00 0.00 2.74
28 29 4.543689 TCACTGTTAGGGAGTAGTATGGG 58.456 47.826 0.00 0.00 0.00 4.00
29 30 3.641906 CACTGTTAGGGAGTAGTATGGGG 59.358 52.174 0.00 0.00 0.00 4.96
30 31 3.274153 ACTGTTAGGGAGTAGTATGGGGT 59.726 47.826 0.00 0.00 0.00 4.95
31 32 3.641906 CTGTTAGGGAGTAGTATGGGGTG 59.358 52.174 0.00 0.00 0.00 4.61
32 33 2.970640 GTTAGGGAGTAGTATGGGGTGG 59.029 54.545 0.00 0.00 0.00 4.61
33 34 1.024536 AGGGAGTAGTATGGGGTGGT 58.975 55.000 0.00 0.00 0.00 4.16
34 35 1.129058 GGGAGTAGTATGGGGTGGTG 58.871 60.000 0.00 0.00 0.00 4.17
35 36 0.468648 GGAGTAGTATGGGGTGGTGC 59.531 60.000 0.00 0.00 0.00 5.01
36 37 0.468648 GAGTAGTATGGGGTGGTGCC 59.531 60.000 0.00 0.00 0.00 5.01
37 38 0.252974 AGTAGTATGGGGTGGTGCCA 60.253 55.000 0.00 0.00 39.65 4.92
38 39 0.843984 GTAGTATGGGGTGGTGCCAT 59.156 55.000 0.00 0.00 39.65 4.40
39 40 1.136828 TAGTATGGGGTGGTGCCATC 58.863 55.000 0.00 0.00 39.65 3.51
40 41 0.918799 AGTATGGGGTGGTGCCATCA 60.919 55.000 3.69 0.00 39.65 3.07
41 42 0.466189 GTATGGGGTGGTGCCATCAG 60.466 60.000 3.69 0.00 39.65 2.90
42 43 0.918799 TATGGGGTGGTGCCATCAGT 60.919 55.000 3.69 0.00 39.65 3.41
43 44 2.361610 GGGGTGGTGCCATCAGTG 60.362 66.667 3.69 0.00 39.65 3.66
44 45 2.756400 GGGTGGTGCCATCAGTGA 59.244 61.111 3.69 0.00 39.65 3.41
45 46 1.074775 GGGTGGTGCCATCAGTGAA 59.925 57.895 0.00 0.00 39.65 3.18
46 47 0.539438 GGGTGGTGCCATCAGTGAAA 60.539 55.000 0.00 0.00 39.65 2.69
47 48 1.327303 GGTGGTGCCATCAGTGAAAA 58.673 50.000 0.00 0.00 37.17 2.29
48 49 1.000274 GGTGGTGCCATCAGTGAAAAC 60.000 52.381 0.00 0.00 37.17 2.43
49 50 1.956477 GTGGTGCCATCAGTGAAAACT 59.044 47.619 0.00 0.00 0.00 2.66
50 51 1.955778 TGGTGCCATCAGTGAAAACTG 59.044 47.619 0.00 0.00 39.00 3.16
51 52 1.336240 GGTGCCATCAGTGAAAACTGC 60.336 52.381 0.00 0.00 37.63 4.40
52 53 1.337703 GTGCCATCAGTGAAAACTGCA 59.662 47.619 0.00 0.00 37.63 4.41
53 54 2.029649 GTGCCATCAGTGAAAACTGCAT 60.030 45.455 0.00 0.00 37.63 3.96
54 55 2.029739 TGCCATCAGTGAAAACTGCATG 60.030 45.455 0.00 6.27 37.63 4.06
55 56 2.029649 GCCATCAGTGAAAACTGCATGT 60.030 45.455 0.00 0.00 37.63 3.21
56 57 3.829948 CCATCAGTGAAAACTGCATGTC 58.170 45.455 0.00 0.00 37.63 3.06
57 58 3.366679 CCATCAGTGAAAACTGCATGTCC 60.367 47.826 0.00 0.00 37.63 4.02
58 59 2.929641 TCAGTGAAAACTGCATGTCCA 58.070 42.857 0.91 0.00 37.63 4.02
59 60 2.618241 TCAGTGAAAACTGCATGTCCAC 59.382 45.455 0.91 0.00 37.63 4.02
60 61 1.603802 AGTGAAAACTGCATGTCCACG 59.396 47.619 0.00 0.00 0.00 4.94
61 62 0.950836 TGAAAACTGCATGTCCACGG 59.049 50.000 0.00 0.00 0.00 4.94
62 63 0.951558 GAAAACTGCATGTCCACGGT 59.048 50.000 0.00 0.00 0.00 4.83
63 64 1.336755 GAAAACTGCATGTCCACGGTT 59.663 47.619 0.00 0.00 36.96 4.44
64 65 2.264005 AAACTGCATGTCCACGGTTA 57.736 45.000 0.00 0.00 34.32 2.85
65 66 1.808411 AACTGCATGTCCACGGTTAG 58.192 50.000 0.00 0.00 33.66 2.34
66 67 0.973632 ACTGCATGTCCACGGTTAGA 59.026 50.000 0.00 0.00 0.00 2.10
67 68 1.066858 ACTGCATGTCCACGGTTAGAG 60.067 52.381 0.00 0.00 0.00 2.43
68 69 0.249120 TGCATGTCCACGGTTAGAGG 59.751 55.000 0.00 0.00 0.00 3.69
69 70 0.462047 GCATGTCCACGGTTAGAGGG 60.462 60.000 0.00 0.00 0.00 4.30
70 71 1.191535 CATGTCCACGGTTAGAGGGA 58.808 55.000 0.00 0.00 0.00 4.20
71 72 1.553248 CATGTCCACGGTTAGAGGGAA 59.447 52.381 0.00 0.00 0.00 3.97
72 73 1.719529 TGTCCACGGTTAGAGGGAAA 58.280 50.000 0.00 0.00 0.00 3.13
73 74 2.048601 TGTCCACGGTTAGAGGGAAAA 58.951 47.619 0.00 0.00 0.00 2.29
74 75 2.640826 TGTCCACGGTTAGAGGGAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
75 76 3.073356 TGTCCACGGTTAGAGGGAAAATT 59.927 43.478 0.00 0.00 0.00 1.82
76 77 4.077108 GTCCACGGTTAGAGGGAAAATTT 58.923 43.478 0.00 0.00 0.00 1.82
77 78 4.076394 TCCACGGTTAGAGGGAAAATTTG 58.924 43.478 0.00 0.00 0.00 2.32
78 79 3.366985 CCACGGTTAGAGGGAAAATTTGC 60.367 47.826 0.00 0.00 0.00 3.68
79 80 3.254657 CACGGTTAGAGGGAAAATTTGCA 59.745 43.478 0.00 0.00 0.00 4.08
80 81 3.254903 ACGGTTAGAGGGAAAATTTGCAC 59.745 43.478 0.00 0.00 0.00 4.57
81 82 3.254657 CGGTTAGAGGGAAAATTTGCACA 59.745 43.478 0.06 0.00 0.00 4.57
82 83 4.082245 CGGTTAGAGGGAAAATTTGCACAT 60.082 41.667 0.06 0.00 0.00 3.21
83 84 5.410924 GGTTAGAGGGAAAATTTGCACATC 58.589 41.667 0.06 0.00 0.00 3.06
84 85 3.855689 AGAGGGAAAATTTGCACATCG 57.144 42.857 0.06 0.00 0.00 3.84
85 86 3.420893 AGAGGGAAAATTTGCACATCGA 58.579 40.909 0.06 0.00 0.00 3.59
86 87 3.191371 AGAGGGAAAATTTGCACATCGAC 59.809 43.478 0.06 0.00 0.00 4.20
87 88 2.095263 AGGGAAAATTTGCACATCGACG 60.095 45.455 0.06 0.00 0.00 5.12
88 89 2.250188 GGAAAATTTGCACATCGACGG 58.750 47.619 0.00 0.00 0.00 4.79
89 90 2.351350 GGAAAATTTGCACATCGACGGT 60.351 45.455 0.00 0.00 0.00 4.83
90 91 2.611974 AAATTTGCACATCGACGGTC 57.388 45.000 0.00 0.00 0.00 4.79
91 92 1.518325 AATTTGCACATCGACGGTCA 58.482 45.000 9.10 0.00 0.00 4.02
92 93 1.518325 ATTTGCACATCGACGGTCAA 58.482 45.000 9.10 0.00 0.00 3.18
93 94 0.584396 TTTGCACATCGACGGTCAAC 59.416 50.000 9.10 0.00 0.00 3.18
94 95 0.249699 TTGCACATCGACGGTCAACT 60.250 50.000 9.10 0.00 0.00 3.16
95 96 0.599060 TGCACATCGACGGTCAACTA 59.401 50.000 9.10 0.00 0.00 2.24
96 97 1.269166 GCACATCGACGGTCAACTAG 58.731 55.000 9.10 0.00 0.00 2.57
97 98 1.402456 GCACATCGACGGTCAACTAGT 60.402 52.381 9.10 0.00 0.00 2.57
98 99 2.925306 GCACATCGACGGTCAACTAGTT 60.925 50.000 9.10 1.12 0.00 2.24
99 100 2.661675 CACATCGACGGTCAACTAGTTG 59.338 50.000 26.60 26.60 41.71 3.16
100 101 1.654105 CATCGACGGTCAACTAGTTGC 59.346 52.381 27.49 21.55 40.24 4.17
101 102 0.669619 TCGACGGTCAACTAGTTGCA 59.330 50.000 27.49 15.28 40.24 4.08
102 103 0.782384 CGACGGTCAACTAGTTGCAC 59.218 55.000 27.49 23.53 40.24 4.57
103 104 1.145803 GACGGTCAACTAGTTGCACC 58.854 55.000 28.96 28.96 40.24 5.01
104 105 0.466543 ACGGTCAACTAGTTGCACCA 59.533 50.000 32.92 18.54 39.00 4.17
105 106 1.134340 ACGGTCAACTAGTTGCACCAA 60.134 47.619 32.92 18.27 39.00 3.67
106 107 1.944024 CGGTCAACTAGTTGCACCAAA 59.056 47.619 32.92 17.73 39.00 3.28
107 108 2.286772 CGGTCAACTAGTTGCACCAAAC 60.287 50.000 32.92 24.39 39.00 2.93
108 109 2.286772 GGTCAACTAGTTGCACCAAACG 60.287 50.000 31.29 12.44 38.95 3.60
109 110 2.610374 GTCAACTAGTTGCACCAAACGA 59.390 45.455 27.49 7.19 40.24 3.85
110 111 3.064271 GTCAACTAGTTGCACCAAACGAA 59.936 43.478 27.49 6.49 40.24 3.85
111 112 3.311322 TCAACTAGTTGCACCAAACGAAG 59.689 43.478 27.49 2.87 40.24 3.79
112 113 3.188159 ACTAGTTGCACCAAACGAAGA 57.812 42.857 0.00 0.00 35.13 2.87
113 114 2.870411 ACTAGTTGCACCAAACGAAGAC 59.130 45.455 0.00 0.00 35.13 3.01
114 115 2.038387 AGTTGCACCAAACGAAGACT 57.962 45.000 0.00 0.00 35.13 3.24
115 116 3.188159 AGTTGCACCAAACGAAGACTA 57.812 42.857 0.00 0.00 35.13 2.59
116 117 3.537580 AGTTGCACCAAACGAAGACTAA 58.462 40.909 0.00 0.00 35.13 2.24
117 118 3.942748 AGTTGCACCAAACGAAGACTAAA 59.057 39.130 0.00 0.00 35.13 1.85
118 119 4.578928 AGTTGCACCAAACGAAGACTAAAT 59.421 37.500 0.00 0.00 35.13 1.40
119 120 5.067283 AGTTGCACCAAACGAAGACTAAATT 59.933 36.000 0.00 0.00 35.13 1.82
120 121 4.854399 TGCACCAAACGAAGACTAAATTG 58.146 39.130 0.00 0.00 0.00 2.32
121 122 3.668656 GCACCAAACGAAGACTAAATTGC 59.331 43.478 0.00 0.00 0.00 3.56
122 123 4.791411 GCACCAAACGAAGACTAAATTGCA 60.791 41.667 0.00 0.00 0.00 4.08
123 124 4.675114 CACCAAACGAAGACTAAATTGCAC 59.325 41.667 0.00 0.00 0.00 4.57
124 125 4.336993 ACCAAACGAAGACTAAATTGCACA 59.663 37.500 0.00 0.00 0.00 4.57
125 126 5.009610 ACCAAACGAAGACTAAATTGCACAT 59.990 36.000 0.00 0.00 0.00 3.21
126 127 6.205853 ACCAAACGAAGACTAAATTGCACATA 59.794 34.615 0.00 0.00 0.00 2.29
127 128 7.081349 CCAAACGAAGACTAAATTGCACATAA 58.919 34.615 0.00 0.00 0.00 1.90
128 129 7.593273 CCAAACGAAGACTAAATTGCACATAAA 59.407 33.333 0.00 0.00 0.00 1.40
129 130 8.963130 CAAACGAAGACTAAATTGCACATAAAA 58.037 29.630 0.00 0.00 0.00 1.52
130 131 9.522804 AAACGAAGACTAAATTGCACATAAAAA 57.477 25.926 0.00 0.00 0.00 1.94
152 153 2.303163 TTCGTCGGAACATACCCATG 57.697 50.000 0.00 0.00 38.21 3.66
153 154 0.179094 TCGTCGGAACATACCCATGC 60.179 55.000 0.00 0.00 35.39 4.06
154 155 1.487452 CGTCGGAACATACCCATGCG 61.487 60.000 0.00 0.00 35.39 4.73
155 156 0.179094 GTCGGAACATACCCATGCGA 60.179 55.000 0.00 0.00 35.39 5.10
156 157 0.104120 TCGGAACATACCCATGCGAG 59.896 55.000 0.00 0.00 35.39 5.03
157 158 0.104120 CGGAACATACCCATGCGAGA 59.896 55.000 0.00 0.00 35.39 4.04
158 159 1.270305 CGGAACATACCCATGCGAGAT 60.270 52.381 0.00 0.00 35.39 2.75
159 160 2.417719 GGAACATACCCATGCGAGATC 58.582 52.381 0.00 0.00 35.39 2.75
160 161 2.037772 GGAACATACCCATGCGAGATCT 59.962 50.000 0.00 0.00 35.39 2.75
161 162 3.258372 GGAACATACCCATGCGAGATCTA 59.742 47.826 0.00 0.00 35.39 1.98
162 163 4.489810 GAACATACCCATGCGAGATCTAG 58.510 47.826 0.00 0.00 35.39 2.43
163 164 3.767711 ACATACCCATGCGAGATCTAGA 58.232 45.455 7.06 0.00 35.39 2.43
164 165 4.348486 ACATACCCATGCGAGATCTAGAT 58.652 43.478 4.47 4.47 35.39 1.98
165 166 4.774726 ACATACCCATGCGAGATCTAGATT 59.225 41.667 6.70 0.00 35.39 2.40
166 167 3.951775 ACCCATGCGAGATCTAGATTC 57.048 47.619 6.70 5.87 0.00 2.52
167 168 2.230025 ACCCATGCGAGATCTAGATTCG 59.770 50.000 22.31 22.31 37.40 3.34
168 169 2.489722 CCCATGCGAGATCTAGATTCGA 59.510 50.000 27.00 17.84 36.49 3.71
169 170 3.057245 CCCATGCGAGATCTAGATTCGAA 60.057 47.826 27.00 21.71 36.49 3.71
170 171 4.165036 CCATGCGAGATCTAGATTCGAAG 58.835 47.826 27.00 18.93 36.49 3.79
171 172 4.083057 CCATGCGAGATCTAGATTCGAAGA 60.083 45.833 27.00 16.53 36.49 2.87
172 173 4.740741 TGCGAGATCTAGATTCGAAGAG 57.259 45.455 27.00 1.00 38.43 2.85
173 174 3.058570 TGCGAGATCTAGATTCGAAGAGC 60.059 47.826 27.00 17.55 38.43 4.09
174 175 3.058570 GCGAGATCTAGATTCGAAGAGCA 60.059 47.826 27.00 0.00 38.43 4.26
175 176 4.463209 CGAGATCTAGATTCGAAGAGCAC 58.537 47.826 22.22 0.00 38.43 4.40
176 177 4.463209 GAGATCTAGATTCGAAGAGCACG 58.537 47.826 6.70 0.00 38.43 5.34
177 178 3.880490 AGATCTAGATTCGAAGAGCACGT 59.120 43.478 6.70 0.00 38.43 4.49
178 179 3.677190 TCTAGATTCGAAGAGCACGTC 57.323 47.619 3.35 0.00 38.43 4.34
179 180 3.007635 TCTAGATTCGAAGAGCACGTCA 58.992 45.455 3.35 0.00 38.43 4.35
180 181 1.983972 AGATTCGAAGAGCACGTCAC 58.016 50.000 3.35 0.00 38.43 3.67
181 182 0.635731 GATTCGAAGAGCACGTCACG 59.364 55.000 3.35 0.00 38.43 4.35
182 183 0.240145 ATTCGAAGAGCACGTCACGA 59.760 50.000 2.91 0.00 38.43 4.35
183 184 0.385598 TTCGAAGAGCACGTCACGAG 60.386 55.000 2.91 0.00 38.43 4.18
184 185 1.797933 CGAAGAGCACGTCACGAGG 60.798 63.158 2.91 0.00 31.70 4.63
185 186 1.444553 GAAGAGCACGTCACGAGGG 60.445 63.158 2.91 0.00 0.00 4.30
186 187 2.143594 GAAGAGCACGTCACGAGGGT 62.144 60.000 2.91 0.04 0.00 4.34
187 188 1.745320 AAGAGCACGTCACGAGGGTT 61.745 55.000 2.91 0.00 0.00 4.11
188 189 1.300697 GAGCACGTCACGAGGGTTT 60.301 57.895 2.91 0.00 0.00 3.27
189 190 1.282930 GAGCACGTCACGAGGGTTTC 61.283 60.000 2.91 0.00 0.00 2.78
190 191 1.593209 GCACGTCACGAGGGTTTCA 60.593 57.895 2.91 0.00 0.00 2.69
191 192 1.155424 GCACGTCACGAGGGTTTCAA 61.155 55.000 2.91 0.00 0.00 2.69
192 193 0.580104 CACGTCACGAGGGTTTCAAC 59.420 55.000 2.91 0.00 0.00 3.18
193 194 0.872881 ACGTCACGAGGGTTTCAACG 60.873 55.000 2.91 0.00 34.16 4.10
194 195 1.554042 CGTCACGAGGGTTTCAACGG 61.554 60.000 0.00 0.00 0.00 4.44
195 196 0.531311 GTCACGAGGGTTTCAACGGT 60.531 55.000 0.00 0.00 0.00 4.83
196 197 0.531090 TCACGAGGGTTTCAACGGTG 60.531 55.000 0.00 0.00 0.00 4.94
197 198 0.531090 CACGAGGGTTTCAACGGTGA 60.531 55.000 0.00 0.00 0.00 4.02
198 199 0.178533 ACGAGGGTTTCAACGGTGAA 59.821 50.000 12.93 12.93 42.12 3.18
208 209 4.886247 TTCAACGGTGAAAACGAATCTT 57.114 36.364 14.82 0.00 40.87 2.40
209 210 5.987777 TTCAACGGTGAAAACGAATCTTA 57.012 34.783 14.82 0.00 40.87 2.10
210 211 5.987777 TCAACGGTGAAAACGAATCTTAA 57.012 34.783 0.00 0.00 34.93 1.85
211 212 6.360844 TCAACGGTGAAAACGAATCTTAAA 57.639 33.333 0.00 0.00 34.93 1.52
212 213 6.961576 TCAACGGTGAAAACGAATCTTAAAT 58.038 32.000 0.00 0.00 34.93 1.40
213 214 6.853872 TCAACGGTGAAAACGAATCTTAAATG 59.146 34.615 0.00 0.00 34.93 2.32
214 215 5.151389 ACGGTGAAAACGAATCTTAAATGC 58.849 37.500 0.00 0.00 34.93 3.56
215 216 4.259734 CGGTGAAAACGAATCTTAAATGCG 59.740 41.667 0.00 0.00 0.00 4.73
216 217 5.387279 GGTGAAAACGAATCTTAAATGCGA 58.613 37.500 0.00 0.00 0.00 5.10
217 218 6.027749 GGTGAAAACGAATCTTAAATGCGAT 58.972 36.000 0.00 0.00 0.00 4.58
218 219 7.184106 GGTGAAAACGAATCTTAAATGCGATA 58.816 34.615 0.00 0.00 0.00 2.92
219 220 7.163682 GGTGAAAACGAATCTTAAATGCGATAC 59.836 37.037 0.00 0.00 0.00 2.24
220 221 6.897663 TGAAAACGAATCTTAAATGCGATACG 59.102 34.615 0.00 0.00 0.00 3.06
237 238 7.810429 GCGATACGCGATTTAAAAATTTAGA 57.190 32.000 15.93 0.00 44.55 2.10
238 239 8.248547 GCGATACGCGATTTAAAAATTTAGAA 57.751 30.769 15.93 0.00 44.55 2.10
239 240 8.726836 GCGATACGCGATTTAAAAATTTAGAAA 58.273 29.630 15.93 0.00 44.55 2.52
244 245 9.453325 ACGCGATTTAAAAATTTAGAAACTCAA 57.547 25.926 15.93 0.00 0.00 3.02
258 259 6.911484 AGAAACTCAAATTAAATGCGTTCG 57.089 33.333 0.00 0.00 0.00 3.95
259 260 5.342259 AGAAACTCAAATTAAATGCGTTCGC 59.658 36.000 10.34 10.34 0.00 4.70
260 261 4.419522 ACTCAAATTAAATGCGTTCGCT 57.580 36.364 17.63 0.99 0.00 4.93
261 262 4.794169 ACTCAAATTAAATGCGTTCGCTT 58.206 34.783 17.63 9.09 0.00 4.68
262 263 4.851558 ACTCAAATTAAATGCGTTCGCTTC 59.148 37.500 17.63 0.00 0.00 3.86
263 264 4.788690 TCAAATTAAATGCGTTCGCTTCA 58.211 34.783 17.63 0.00 0.00 3.02
264 265 4.615121 TCAAATTAAATGCGTTCGCTTCAC 59.385 37.500 17.63 0.00 0.00 3.18
265 266 3.822594 ATTAAATGCGTTCGCTTCACA 57.177 38.095 17.63 0.00 0.00 3.58
266 267 3.822594 TTAAATGCGTTCGCTTCACAT 57.177 38.095 17.63 0.31 0.00 3.21
267 268 1.967762 AAATGCGTTCGCTTCACATG 58.032 45.000 17.63 0.00 0.00 3.21
268 269 1.155889 AATGCGTTCGCTTCACATGA 58.844 45.000 17.63 0.00 0.00 3.07
269 270 1.155889 ATGCGTTCGCTTCACATGAA 58.844 45.000 17.63 0.00 0.00 2.57
270 271 1.155889 TGCGTTCGCTTCACATGAAT 58.844 45.000 17.63 0.00 33.01 2.57
271 272 2.342179 TGCGTTCGCTTCACATGAATA 58.658 42.857 17.63 0.00 33.01 1.75
272 273 2.935849 TGCGTTCGCTTCACATGAATAT 59.064 40.909 17.63 0.00 33.01 1.28
273 274 3.373748 TGCGTTCGCTTCACATGAATATT 59.626 39.130 17.63 0.00 33.01 1.28
274 275 4.142708 TGCGTTCGCTTCACATGAATATTT 60.143 37.500 17.63 0.00 33.01 1.40
275 276 5.064071 TGCGTTCGCTTCACATGAATATTTA 59.936 36.000 17.63 0.00 33.01 1.40
276 277 6.136071 GCGTTCGCTTCACATGAATATTTAT 58.864 36.000 9.99 0.00 33.01 1.40
277 278 6.632834 GCGTTCGCTTCACATGAATATTTATT 59.367 34.615 9.99 0.00 33.01 1.40
278 279 7.796660 GCGTTCGCTTCACATGAATATTTATTA 59.203 33.333 9.99 0.00 33.01 0.98
279 280 9.644993 CGTTCGCTTCACATGAATATTTATTAA 57.355 29.630 0.00 0.00 33.01 1.40
306 307 8.747538 ACTTTTCTGTTTATGTGGTACTTTCT 57.252 30.769 0.00 0.00 0.00 2.52
307 308 9.185680 ACTTTTCTGTTTATGTGGTACTTTCTT 57.814 29.630 0.00 0.00 0.00 2.52
354 355 8.584063 TCAATTAAAGGGACAAATTACTACCC 57.416 34.615 0.00 0.00 40.71 3.69
363 364 8.762481 GGGACAAATTACTACCCTTTATTGAT 57.238 34.615 0.00 0.00 37.75 2.57
364 365 9.197306 GGGACAAATTACTACCCTTTATTGATT 57.803 33.333 0.00 0.00 37.75 2.57
379 380 9.958180 CCTTTATTGATTAGGGACCAAAATTTT 57.042 29.630 0.00 0.00 0.00 1.82
385 386 9.859152 TTGATTAGGGACCAAAATTTTTCATTT 57.141 25.926 0.00 0.00 0.00 2.32
386 387 9.859152 TGATTAGGGACCAAAATTTTTCATTTT 57.141 25.926 0.00 0.00 0.00 1.82
389 390 9.785982 TTAGGGACCAAAATTTTTCATTTTAGG 57.214 29.630 0.00 0.00 30.85 2.69
390 391 6.714810 AGGGACCAAAATTTTTCATTTTAGGC 59.285 34.615 0.00 0.00 30.85 3.93
391 392 6.714810 GGGACCAAAATTTTTCATTTTAGGCT 59.285 34.615 0.00 0.00 30.85 4.58
392 393 7.308529 GGGACCAAAATTTTTCATTTTAGGCTG 60.309 37.037 0.00 0.00 30.85 4.85
393 394 7.308529 GGACCAAAATTTTTCATTTTAGGCTGG 60.309 37.037 0.00 0.00 30.85 4.85
394 395 6.016360 ACCAAAATTTTTCATTTTAGGCTGGC 60.016 34.615 0.00 0.00 30.85 4.85
395 396 6.380995 CAAAATTTTTCATTTTAGGCTGGCC 58.619 36.000 0.00 3.00 30.85 5.36
396 397 3.311486 TTTTTCATTTTAGGCTGGCCG 57.689 42.857 5.93 0.00 41.95 6.13
397 398 0.530288 TTTCATTTTAGGCTGGCCGC 59.470 50.000 10.60 10.60 41.95 6.53
398 399 0.323360 TTCATTTTAGGCTGGCCGCT 60.323 50.000 17.07 7.77 41.95 5.52
399 400 0.748005 TCATTTTAGGCTGGCCGCTC 60.748 55.000 17.07 9.00 41.95 5.03
400 401 1.819632 ATTTTAGGCTGGCCGCTCG 60.820 57.895 17.07 0.00 41.95 5.03
439 440 3.827898 GCCGCTGGCTAGACTCGT 61.828 66.667 0.00 0.00 46.69 4.18
440 441 2.409651 CCGCTGGCTAGACTCGTC 59.590 66.667 0.00 0.00 0.00 4.20
441 442 2.409651 CGCTGGCTAGACTCGTCC 59.590 66.667 0.00 0.00 0.00 4.79
442 443 2.409651 GCTGGCTAGACTCGTCCG 59.590 66.667 0.00 0.00 0.00 4.79
443 444 3.111939 CTGGCTAGACTCGTCCGG 58.888 66.667 0.00 0.00 0.00 5.14
444 445 1.749638 CTGGCTAGACTCGTCCGGT 60.750 63.158 0.00 0.00 0.00 5.28
445 446 1.716826 CTGGCTAGACTCGTCCGGTC 61.717 65.000 0.00 0.00 0.00 4.79
512 513 0.830023 TCCGACTGACATGTGGGTCA 60.830 55.000 20.57 6.67 45.06 4.02
537 544 4.388499 GCGCCACTTCCGGGAAGA 62.388 66.667 36.76 6.00 41.71 2.87
539 546 2.434359 GCCACTTCCGGGAAGACG 60.434 66.667 36.76 26.54 41.71 4.18
569 576 0.034896 AGCTCACCCCACGTTTACAG 59.965 55.000 0.00 0.00 0.00 2.74
633 643 3.738282 CGTCAGGAGAGAAACAAGAACTG 59.262 47.826 0.00 0.00 0.00 3.16
637 647 5.129485 TCAGGAGAGAAACAAGAACTGAACT 59.871 40.000 0.00 0.00 31.51 3.01
639 649 5.365314 AGGAGAGAAACAAGAACTGAACTCT 59.635 40.000 0.00 0.00 36.18 3.24
688 702 4.815308 GCAGTGAGCAATCAATCATACTCT 59.185 41.667 0.00 0.00 44.79 3.24
693 707 4.880759 AGCAATCAATCATACTCTCTCCG 58.119 43.478 0.00 0.00 0.00 4.63
808 822 1.266867 TGGTACGGAAGCCCTAACCC 61.267 60.000 0.00 0.00 35.29 4.11
813 827 0.393944 CGGAAGCCCTAACCCTTTCC 60.394 60.000 0.00 0.00 0.00 3.13
816 830 0.778479 AAGCCCTAACCCTTTCCCCA 60.778 55.000 0.00 0.00 0.00 4.96
875 889 5.432645 CCCCTCTTTTCACTAGGAATCTTC 58.567 45.833 0.00 0.00 34.91 2.87
910 924 2.972625 TGGTCATTTACTGAAGCGAGG 58.027 47.619 0.00 0.00 35.07 4.63
961 975 8.188139 GGATAAAACTCGAATTAATCTTTGCCA 58.812 33.333 0.00 0.00 0.00 4.92
975 989 0.184933 TTGCCATGGTACTATGCCCC 59.815 55.000 14.67 5.05 0.00 5.80
1028 1042 1.746615 CCGGAGATGCAAGTGGTGG 60.747 63.158 0.00 0.00 0.00 4.61
1089 1103 3.616560 GCTCCAAGATGAACTACCACGAA 60.617 47.826 0.00 0.00 0.00 3.85
1249 1263 9.581099 CTATAATAACGGATTTTGTTGGCTTTT 57.419 29.630 0.00 0.00 0.00 2.27
1278 1292 2.352127 GCCATTTCTCTGAAGGCAACAC 60.352 50.000 0.00 0.00 44.59 3.32
1332 1346 6.751514 ACGTTGCTCCAATGATGTTTATTA 57.248 33.333 4.34 0.00 34.77 0.98
1411 1425 9.210426 CAATCTGTAATTACTCGCATTGTTTAC 57.790 33.333 16.33 0.00 0.00 2.01
1507 1524 1.670811 CCGTGGCATCATTCTTACCAC 59.329 52.381 0.00 0.00 45.87 4.16
1694 1711 5.186198 CCAGTCTGGAAGGGTAAGTAAATG 58.814 45.833 14.26 0.00 40.96 2.32
1767 1805 5.987347 GTGTGTTACTGGTCTTTACTGCTTA 59.013 40.000 0.00 0.00 0.00 3.09
1770 1808 3.336138 ACTGGTCTTTACTGCTTAGGC 57.664 47.619 0.00 0.00 39.26 3.93
1791 1829 3.181479 GCAGAATGTGATGCCATGAATGT 60.181 43.478 0.00 0.00 39.31 2.71
1836 1934 6.409704 AGTTCTGCTCATCTAATTACAGCAA 58.590 36.000 0.00 0.00 39.55 3.91
1905 2003 1.376037 CCTTGTTGGCTCCCTCGTC 60.376 63.158 0.00 0.00 0.00 4.20
1970 2068 6.755141 ACTGATTGCAATTATCATCTTGTTGC 59.245 34.615 14.33 0.00 43.93 4.17
2180 2281 2.506472 GGTTCCCGATCTGCTCCC 59.494 66.667 0.00 0.00 0.00 4.30
2196 2297 2.139917 CTCCCGTGTGAAATTTCGTGA 58.860 47.619 13.34 0.00 0.00 4.35
2303 2404 2.007608 GGACAGTATTTCCTTCGCCAC 58.992 52.381 0.00 0.00 0.00 5.01
2357 2458 3.427573 TCACACGGGAGTAGATTGAGAA 58.572 45.455 0.00 0.00 44.67 2.87
2388 2489 7.549134 GGTTTGATATCCCCAAATTTCAGTTTC 59.451 37.037 0.00 0.00 36.14 2.78
2433 2537 8.842358 ACATTTAATATTCGTATAGGGGTGTG 57.158 34.615 0.00 0.00 0.00 3.82
2434 2538 7.881232 ACATTTAATATTCGTATAGGGGTGTGG 59.119 37.037 0.00 0.00 0.00 4.17
2435 2539 6.999705 TTAATATTCGTATAGGGGTGTGGT 57.000 37.500 0.00 0.00 0.00 4.16
2436 2540 8.489676 TTTAATATTCGTATAGGGGTGTGGTA 57.510 34.615 0.00 0.00 0.00 3.25
2437 2541 8.669055 TTAATATTCGTATAGGGGTGTGGTAT 57.331 34.615 0.00 0.00 0.00 2.73
2438 2542 9.766754 TTAATATTCGTATAGGGGTGTGGTATA 57.233 33.333 0.00 0.00 0.00 1.47
2439 2543 7.893124 ATATTCGTATAGGGGTGTGGTATAG 57.107 40.000 0.00 0.00 0.00 1.31
2440 2544 4.038271 TCGTATAGGGGTGTGGTATAGG 57.962 50.000 0.00 0.00 0.00 2.57
2441 2545 3.094572 CGTATAGGGGTGTGGTATAGGG 58.905 54.545 0.00 0.00 0.00 3.53
2442 2546 2.735259 ATAGGGGTGTGGTATAGGGG 57.265 55.000 0.00 0.00 0.00 4.79
2640 2744 6.079763 CGGAAATTCTGTGTGTTATGAACAG 58.920 40.000 0.00 0.00 43.10 3.16
2806 2910 5.217393 CACCATGCGGAAGATTATGAAATG 58.783 41.667 0.00 0.00 35.59 2.32
3024 3128 2.840651 CCAGAGTGGTATCCCTTCAAGT 59.159 50.000 0.00 0.00 31.35 3.16
3034 3138 2.639065 TCCCTTCAAGTGTGACACAAC 58.361 47.619 18.95 5.02 36.74 3.32
3074 3178 2.288273 ACGCTGAGTTCTTGTACAGACC 60.288 50.000 0.00 0.00 32.90 3.85
3486 3591 1.078918 CGCCAGCAGTCCTGATTCA 60.079 57.895 0.00 0.00 44.64 2.57
3508 3613 4.558538 ATTGGAGCATTGAAATCGTAGC 57.441 40.909 0.00 0.00 0.00 3.58
3531 3638 7.852263 AGCTGTAGGTTTCTGTATCTGTAATT 58.148 34.615 0.00 0.00 0.00 1.40
3535 3642 8.202137 TGTAGGTTTCTGTATCTGTAATTAGCC 58.798 37.037 0.00 0.00 0.00 3.93
3568 3675 8.102484 ACAAAAATCCTACTGGTCCAGTATAT 57.898 34.615 28.23 21.49 44.49 0.86
3569 3676 8.557450 ACAAAAATCCTACTGGTCCAGTATATT 58.443 33.333 28.23 24.90 44.49 1.28
3570 3677 9.408648 CAAAAATCCTACTGGTCCAGTATATTT 57.591 33.333 28.23 27.87 44.49 1.40
3571 3678 9.628500 AAAAATCCTACTGGTCCAGTATATTTC 57.372 33.333 30.22 0.00 44.49 2.17
3730 3838 9.449719 AATAAATCTTCCAGTCTATTTCGTTGT 57.550 29.630 0.00 0.00 0.00 3.32
3994 4133 5.515797 TTTGATATCTCATCGTCCGTCTT 57.484 39.130 3.98 0.00 0.00 3.01
4586 9278 7.039011 TGGTACAGAGACTTATTATATGGCCAG 60.039 40.741 13.05 0.00 0.00 4.85
4619 9313 5.012354 ACTTGGTTGGGTGTATATATACCGG 59.988 44.000 19.13 0.00 38.24 5.28
4806 9505 8.870879 ACTTTTAAAGACGCTATTATGAGTCAC 58.129 33.333 12.02 0.00 38.83 3.67
4953 9652 4.098807 TGCCTTAGTTGATGCTGTCGTATA 59.901 41.667 0.00 0.00 0.00 1.47
4969 9668 7.116948 GCTGTCGTATATTGCAGATAGATTGTT 59.883 37.037 0.24 0.00 0.00 2.83
5001 9700 6.342906 ACTGAATTATCACCATGCCAATTTG 58.657 36.000 0.00 0.00 0.00 2.32
5097 9797 5.994668 GGTGAAGAACTGAAGACTGAAGAAT 59.005 40.000 0.00 0.00 0.00 2.40
5174 9875 2.917933 CCCGAAAAGAGCATATCACCA 58.082 47.619 0.00 0.00 0.00 4.17
5207 9908 3.322828 TCGCCCCGCTTTATAGATAAAGT 59.677 43.478 18.65 0.00 46.78 2.66
5248 9953 2.355197 CCAACAGAGTTCACACACACA 58.645 47.619 0.00 0.00 0.00 3.72
5249 9954 2.095853 CCAACAGAGTTCACACACACAC 59.904 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.692710 CATACTACTCCCTAACAGTGAAATGTA 58.307 37.037 0.00 0.00 31.70 2.29
2 3 6.986817 CCATACTACTCCCTAACAGTGAAATG 59.013 42.308 0.00 0.00 0.00 2.32
4 5 5.424252 CCCATACTACTCCCTAACAGTGAAA 59.576 44.000 0.00 0.00 0.00 2.69
5 6 4.960469 CCCATACTACTCCCTAACAGTGAA 59.040 45.833 0.00 0.00 0.00 3.18
7 8 3.641906 CCCCATACTACTCCCTAACAGTG 59.358 52.174 0.00 0.00 0.00 3.66
8 9 3.274153 ACCCCATACTACTCCCTAACAGT 59.726 47.826 0.00 0.00 0.00 3.55
9 10 3.641906 CACCCCATACTACTCCCTAACAG 59.358 52.174 0.00 0.00 0.00 3.16
10 11 3.631605 CCACCCCATACTACTCCCTAACA 60.632 52.174 0.00 0.00 0.00 2.41
11 12 2.970640 CCACCCCATACTACTCCCTAAC 59.029 54.545 0.00 0.00 0.00 2.34
12 13 2.593466 ACCACCCCATACTACTCCCTAA 59.407 50.000 0.00 0.00 0.00 2.69
13 14 2.090943 CACCACCCCATACTACTCCCTA 60.091 54.545 0.00 0.00 0.00 3.53
14 15 1.024536 ACCACCCCATACTACTCCCT 58.975 55.000 0.00 0.00 0.00 4.20
15 16 1.129058 CACCACCCCATACTACTCCC 58.871 60.000 0.00 0.00 0.00 4.30
16 17 0.468648 GCACCACCCCATACTACTCC 59.531 60.000 0.00 0.00 0.00 3.85
17 18 0.468648 GGCACCACCCCATACTACTC 59.531 60.000 0.00 0.00 0.00 2.59
18 19 0.252974 TGGCACCACCCCATACTACT 60.253 55.000 0.00 0.00 37.83 2.57
19 20 0.843984 ATGGCACCACCCCATACTAC 59.156 55.000 0.00 0.00 41.17 2.73
20 21 1.136828 GATGGCACCACCCCATACTA 58.863 55.000 0.00 0.00 42.94 1.82
21 22 0.918799 TGATGGCACCACCCCATACT 60.919 55.000 0.00 0.00 42.94 2.12
22 23 0.466189 CTGATGGCACCACCCCATAC 60.466 60.000 0.00 0.00 42.94 2.39
23 24 0.918799 ACTGATGGCACCACCCCATA 60.919 55.000 0.00 0.00 42.94 2.74
24 25 2.240918 ACTGATGGCACCACCCCAT 61.241 57.895 0.00 0.00 45.47 4.00
25 26 2.858476 ACTGATGGCACCACCCCA 60.858 61.111 0.00 0.00 37.83 4.96
26 27 2.361610 CACTGATGGCACCACCCC 60.362 66.667 0.00 0.00 37.83 4.95
27 28 0.539438 TTTCACTGATGGCACCACCC 60.539 55.000 0.00 0.00 37.83 4.61
28 29 1.000274 GTTTTCACTGATGGCACCACC 60.000 52.381 0.00 0.00 39.84 4.61
29 30 1.956477 AGTTTTCACTGATGGCACCAC 59.044 47.619 0.00 0.00 0.00 4.16
30 31 2.363306 AGTTTTCACTGATGGCACCA 57.637 45.000 0.00 0.00 0.00 4.17
40 41 1.603802 CGTGGACATGCAGTTTTCACT 59.396 47.619 0.00 0.00 0.00 3.41
41 42 1.334960 CCGTGGACATGCAGTTTTCAC 60.335 52.381 0.00 0.00 0.00 3.18
42 43 0.950836 CCGTGGACATGCAGTTTTCA 59.049 50.000 0.00 0.00 0.00 2.69
43 44 0.951558 ACCGTGGACATGCAGTTTTC 59.048 50.000 0.00 0.00 0.00 2.29
44 45 1.398692 AACCGTGGACATGCAGTTTT 58.601 45.000 0.00 0.00 0.00 2.43
45 46 2.151202 CTAACCGTGGACATGCAGTTT 58.849 47.619 0.00 0.00 0.00 2.66
46 47 1.346395 TCTAACCGTGGACATGCAGTT 59.654 47.619 0.00 0.00 0.00 3.16
47 48 0.973632 TCTAACCGTGGACATGCAGT 59.026 50.000 0.00 0.00 0.00 4.40
48 49 1.645034 CTCTAACCGTGGACATGCAG 58.355 55.000 0.00 0.00 0.00 4.41
49 50 0.249120 CCTCTAACCGTGGACATGCA 59.751 55.000 0.00 0.00 0.00 3.96
50 51 0.462047 CCCTCTAACCGTGGACATGC 60.462 60.000 0.00 0.00 0.00 4.06
51 52 1.191535 TCCCTCTAACCGTGGACATG 58.808 55.000 0.00 0.00 0.00 3.21
52 53 1.946984 TTCCCTCTAACCGTGGACAT 58.053 50.000 0.00 0.00 0.00 3.06
53 54 1.719529 TTTCCCTCTAACCGTGGACA 58.280 50.000 0.00 0.00 0.00 4.02
54 55 2.845363 TTTTCCCTCTAACCGTGGAC 57.155 50.000 0.00 0.00 0.00 4.02
55 56 4.076394 CAAATTTTCCCTCTAACCGTGGA 58.924 43.478 0.00 0.00 0.00 4.02
56 57 3.366985 GCAAATTTTCCCTCTAACCGTGG 60.367 47.826 0.00 0.00 0.00 4.94
57 58 3.254657 TGCAAATTTTCCCTCTAACCGTG 59.745 43.478 0.00 0.00 0.00 4.94
58 59 3.254903 GTGCAAATTTTCCCTCTAACCGT 59.745 43.478 0.00 0.00 0.00 4.83
59 60 3.254657 TGTGCAAATTTTCCCTCTAACCG 59.745 43.478 0.00 0.00 0.00 4.44
60 61 4.864704 TGTGCAAATTTTCCCTCTAACC 57.135 40.909 0.00 0.00 0.00 2.85
61 62 5.095490 CGATGTGCAAATTTTCCCTCTAAC 58.905 41.667 0.00 0.00 0.00 2.34
62 63 5.007034 TCGATGTGCAAATTTTCCCTCTAA 58.993 37.500 0.00 0.00 0.00 2.10
63 64 4.394920 GTCGATGTGCAAATTTTCCCTCTA 59.605 41.667 0.00 0.00 0.00 2.43
64 65 3.191371 GTCGATGTGCAAATTTTCCCTCT 59.809 43.478 0.00 0.00 0.00 3.69
65 66 3.501950 GTCGATGTGCAAATTTTCCCTC 58.498 45.455 0.00 0.00 0.00 4.30
66 67 2.095263 CGTCGATGTGCAAATTTTCCCT 60.095 45.455 0.00 0.00 0.00 4.20
67 68 2.250188 CGTCGATGTGCAAATTTTCCC 58.750 47.619 0.00 0.00 0.00 3.97
68 69 2.250188 CCGTCGATGTGCAAATTTTCC 58.750 47.619 3.52 0.00 0.00 3.13
69 70 2.908626 GACCGTCGATGTGCAAATTTTC 59.091 45.455 3.52 0.00 0.00 2.29
70 71 2.292016 TGACCGTCGATGTGCAAATTTT 59.708 40.909 3.52 0.00 0.00 1.82
71 72 1.876799 TGACCGTCGATGTGCAAATTT 59.123 42.857 3.52 0.00 0.00 1.82
72 73 1.518325 TGACCGTCGATGTGCAAATT 58.482 45.000 3.52 0.00 0.00 1.82
73 74 1.196808 GTTGACCGTCGATGTGCAAAT 59.803 47.619 3.52 0.00 0.00 2.32
74 75 0.584396 GTTGACCGTCGATGTGCAAA 59.416 50.000 3.52 0.00 0.00 3.68
75 76 0.249699 AGTTGACCGTCGATGTGCAA 60.250 50.000 3.52 4.73 0.00 4.08
76 77 0.599060 TAGTTGACCGTCGATGTGCA 59.401 50.000 3.52 0.00 0.00 4.57
77 78 1.269166 CTAGTTGACCGTCGATGTGC 58.731 55.000 3.52 0.00 0.00 4.57
78 79 2.631418 ACTAGTTGACCGTCGATGTG 57.369 50.000 3.52 0.00 0.00 3.21
79 80 2.925306 GCAACTAGTTGACCGTCGATGT 60.925 50.000 34.43 0.00 42.93 3.06
80 81 1.654105 GCAACTAGTTGACCGTCGATG 59.346 52.381 34.43 9.42 42.93 3.84
81 82 1.271379 TGCAACTAGTTGACCGTCGAT 59.729 47.619 34.43 0.00 42.93 3.59
82 83 0.669619 TGCAACTAGTTGACCGTCGA 59.330 50.000 34.43 10.35 42.93 4.20
83 84 0.782384 GTGCAACTAGTTGACCGTCG 59.218 55.000 34.43 10.73 42.93 5.12
84 85 1.145803 GGTGCAACTAGTTGACCGTC 58.854 55.000 34.43 18.79 42.93 4.79
85 86 0.466543 TGGTGCAACTAGTTGACCGT 59.533 50.000 34.43 0.00 42.93 4.83
86 87 1.588674 TTGGTGCAACTAGTTGACCG 58.411 50.000 34.43 12.49 42.93 4.79
87 88 2.286772 CGTTTGGTGCAACTAGTTGACC 60.287 50.000 34.43 32.03 42.93 4.02
88 89 2.610374 TCGTTTGGTGCAACTAGTTGAC 59.390 45.455 34.43 26.51 42.93 3.18
89 90 2.907634 TCGTTTGGTGCAACTAGTTGA 58.092 42.857 34.43 18.81 42.93 3.18
90 91 3.311322 TCTTCGTTTGGTGCAACTAGTTG 59.689 43.478 27.85 27.85 43.14 3.16
91 92 3.311596 GTCTTCGTTTGGTGCAACTAGTT 59.688 43.478 2.04 1.12 36.74 2.24
92 93 2.870411 GTCTTCGTTTGGTGCAACTAGT 59.130 45.455 2.04 0.00 36.74 2.57
93 94 3.131396 AGTCTTCGTTTGGTGCAACTAG 58.869 45.455 2.04 0.00 36.74 2.57
94 95 3.188159 AGTCTTCGTTTGGTGCAACTA 57.812 42.857 2.04 0.00 36.74 2.24
95 96 2.038387 AGTCTTCGTTTGGTGCAACT 57.962 45.000 2.04 0.00 36.74 3.16
96 97 3.955771 TTAGTCTTCGTTTGGTGCAAC 57.044 42.857 0.00 0.00 0.00 4.17
97 98 5.277825 CAATTTAGTCTTCGTTTGGTGCAA 58.722 37.500 0.00 0.00 0.00 4.08
98 99 4.791411 GCAATTTAGTCTTCGTTTGGTGCA 60.791 41.667 0.00 0.00 0.00 4.57
99 100 3.668656 GCAATTTAGTCTTCGTTTGGTGC 59.331 43.478 0.00 0.00 0.00 5.01
100 101 4.675114 GTGCAATTTAGTCTTCGTTTGGTG 59.325 41.667 0.00 0.00 0.00 4.17
101 102 4.336993 TGTGCAATTTAGTCTTCGTTTGGT 59.663 37.500 0.00 0.00 0.00 3.67
102 103 4.854399 TGTGCAATTTAGTCTTCGTTTGG 58.146 39.130 0.00 0.00 0.00 3.28
103 104 8.500837 TTTATGTGCAATTTAGTCTTCGTTTG 57.499 30.769 0.00 0.00 0.00 2.93
104 105 9.522804 TTTTTATGTGCAATTTAGTCTTCGTTT 57.477 25.926 0.00 0.00 0.00 3.60
133 134 1.741055 GCATGGGTATGTTCCGACGAA 60.741 52.381 0.00 0.00 36.65 3.85
134 135 0.179094 GCATGGGTATGTTCCGACGA 60.179 55.000 0.00 0.00 36.65 4.20
135 136 1.487452 CGCATGGGTATGTTCCGACG 61.487 60.000 0.68 0.00 36.65 5.12
136 137 0.179094 TCGCATGGGTATGTTCCGAC 60.179 55.000 9.86 0.00 36.65 4.79
137 138 0.104120 CTCGCATGGGTATGTTCCGA 59.896 55.000 9.86 0.00 36.65 4.55
138 139 0.104120 TCTCGCATGGGTATGTTCCG 59.896 55.000 9.86 0.00 36.65 4.30
139 140 2.037772 AGATCTCGCATGGGTATGTTCC 59.962 50.000 9.86 0.00 36.65 3.62
140 141 3.393089 AGATCTCGCATGGGTATGTTC 57.607 47.619 9.86 6.45 36.65 3.18
141 142 4.152647 TCTAGATCTCGCATGGGTATGTT 58.847 43.478 9.86 0.00 36.65 2.71
142 143 3.767711 TCTAGATCTCGCATGGGTATGT 58.232 45.455 9.86 6.27 36.65 2.29
143 144 4.998671 ATCTAGATCTCGCATGGGTATG 57.001 45.455 9.86 2.21 37.36 2.39
144 145 4.097135 CGAATCTAGATCTCGCATGGGTAT 59.903 45.833 18.00 4.98 0.00 2.73
145 146 3.440522 CGAATCTAGATCTCGCATGGGTA 59.559 47.826 18.00 0.00 0.00 3.69
146 147 2.230025 CGAATCTAGATCTCGCATGGGT 59.770 50.000 18.00 0.00 0.00 4.51
147 148 2.489722 TCGAATCTAGATCTCGCATGGG 59.510 50.000 22.04 2.76 32.66 4.00
148 149 3.839051 TCGAATCTAGATCTCGCATGG 57.161 47.619 22.04 4.65 32.66 3.66
149 150 5.040715 TCTTCGAATCTAGATCTCGCATG 57.959 43.478 22.04 16.57 32.66 4.06
150 151 4.379394 GCTCTTCGAATCTAGATCTCGCAT 60.379 45.833 22.04 3.03 32.66 4.73
151 152 3.058570 GCTCTTCGAATCTAGATCTCGCA 60.059 47.826 22.04 15.47 32.66 5.10
152 153 3.058570 TGCTCTTCGAATCTAGATCTCGC 60.059 47.826 22.04 12.76 32.66 5.03
153 154 4.463209 GTGCTCTTCGAATCTAGATCTCG 58.537 47.826 21.36 21.36 0.00 4.04
154 155 4.024387 ACGTGCTCTTCGAATCTAGATCTC 60.024 45.833 5.51 5.42 0.00 2.75
155 156 3.880490 ACGTGCTCTTCGAATCTAGATCT 59.120 43.478 5.51 0.00 0.00 2.75
156 157 4.215965 GACGTGCTCTTCGAATCTAGATC 58.784 47.826 5.51 0.00 0.00 2.75
157 158 3.628032 TGACGTGCTCTTCGAATCTAGAT 59.372 43.478 0.00 0.00 0.00 1.98
158 159 3.007635 TGACGTGCTCTTCGAATCTAGA 58.992 45.455 0.00 0.00 0.00 2.43
159 160 3.102276 GTGACGTGCTCTTCGAATCTAG 58.898 50.000 0.00 0.00 0.00 2.43
160 161 2.475685 CGTGACGTGCTCTTCGAATCTA 60.476 50.000 0.00 0.00 0.00 1.98
161 162 1.729472 CGTGACGTGCTCTTCGAATCT 60.729 52.381 0.00 0.00 0.00 2.40
162 163 0.635731 CGTGACGTGCTCTTCGAATC 59.364 55.000 0.00 0.00 0.00 2.52
163 164 0.240145 TCGTGACGTGCTCTTCGAAT 59.760 50.000 4.40 0.00 0.00 3.34
164 165 0.385598 CTCGTGACGTGCTCTTCGAA 60.386 55.000 4.40 0.00 0.00 3.71
165 166 1.206831 CTCGTGACGTGCTCTTCGA 59.793 57.895 4.40 0.00 0.00 3.71
166 167 1.797933 CCTCGTGACGTGCTCTTCG 60.798 63.158 4.40 0.00 0.00 3.79
167 168 1.444553 CCCTCGTGACGTGCTCTTC 60.445 63.158 4.40 0.00 0.00 2.87
168 169 1.745320 AACCCTCGTGACGTGCTCTT 61.745 55.000 4.40 0.00 0.00 2.85
169 170 1.745320 AAACCCTCGTGACGTGCTCT 61.745 55.000 4.40 0.00 0.00 4.09
170 171 1.282930 GAAACCCTCGTGACGTGCTC 61.283 60.000 4.40 0.00 0.00 4.26
171 172 1.300697 GAAACCCTCGTGACGTGCT 60.301 57.895 4.40 0.00 0.00 4.40
172 173 1.155424 TTGAAACCCTCGTGACGTGC 61.155 55.000 4.40 0.00 0.00 5.34
173 174 0.580104 GTTGAAACCCTCGTGACGTG 59.420 55.000 4.40 1.70 0.00 4.49
174 175 0.872881 CGTTGAAACCCTCGTGACGT 60.873 55.000 4.40 0.00 0.00 4.34
175 176 1.554042 CCGTTGAAACCCTCGTGACG 61.554 60.000 0.00 0.00 0.00 4.35
176 177 0.531311 ACCGTTGAAACCCTCGTGAC 60.531 55.000 0.00 0.00 0.00 3.67
177 178 0.531090 CACCGTTGAAACCCTCGTGA 60.531 55.000 0.00 0.00 0.00 4.35
178 179 0.531090 TCACCGTTGAAACCCTCGTG 60.531 55.000 0.00 0.00 0.00 4.35
179 180 0.178533 TTCACCGTTGAAACCCTCGT 59.821 50.000 0.00 0.00 38.87 4.18
180 181 1.301423 TTTCACCGTTGAAACCCTCG 58.699 50.000 3.76 0.00 45.08 4.63
187 188 4.886247 AAGATTCGTTTTCACCGTTGAA 57.114 36.364 0.00 0.00 40.14 2.69
188 189 5.987777 TTAAGATTCGTTTTCACCGTTGA 57.012 34.783 0.00 0.00 0.00 3.18
189 190 6.398517 GCATTTAAGATTCGTTTTCACCGTTG 60.399 38.462 0.00 0.00 0.00 4.10
190 191 5.627780 GCATTTAAGATTCGTTTTCACCGTT 59.372 36.000 0.00 0.00 0.00 4.44
191 192 5.151389 GCATTTAAGATTCGTTTTCACCGT 58.849 37.500 0.00 0.00 0.00 4.83
192 193 4.259734 CGCATTTAAGATTCGTTTTCACCG 59.740 41.667 0.00 0.00 0.00 4.94
193 194 5.387279 TCGCATTTAAGATTCGTTTTCACC 58.613 37.500 0.00 0.00 0.00 4.02
194 195 7.097967 CGTATCGCATTTAAGATTCGTTTTCAC 60.098 37.037 0.00 0.00 34.49 3.18
195 196 6.897663 CGTATCGCATTTAAGATTCGTTTTCA 59.102 34.615 0.00 0.00 34.49 2.69
196 197 7.279202 CGTATCGCATTTAAGATTCGTTTTC 57.721 36.000 0.00 0.00 34.49 2.29
218 219 9.453325 TTGAGTTTCTAAATTTTTAAATCGCGT 57.547 25.926 5.77 0.00 0.00 6.01
232 233 8.897809 CGAACGCATTTAATTTGAGTTTCTAAA 58.102 29.630 8.65 0.00 37.26 1.85
233 234 7.060174 GCGAACGCATTTAATTTGAGTTTCTAA 59.940 33.333 14.26 0.00 37.26 2.10
234 235 6.521821 GCGAACGCATTTAATTTGAGTTTCTA 59.478 34.615 14.26 0.00 37.26 2.10
235 236 5.342259 GCGAACGCATTTAATTTGAGTTTCT 59.658 36.000 14.26 0.00 37.26 2.52
236 237 5.342259 AGCGAACGCATTTAATTTGAGTTTC 59.658 36.000 20.66 5.64 44.88 2.78
237 238 5.219633 AGCGAACGCATTTAATTTGAGTTT 58.780 33.333 20.66 0.00 44.88 2.66
238 239 4.794169 AGCGAACGCATTTAATTTGAGTT 58.206 34.783 20.66 7.46 44.88 3.01
239 240 4.419522 AGCGAACGCATTTAATTTGAGT 57.580 36.364 20.66 0.00 44.88 3.41
240 241 4.851014 TGAAGCGAACGCATTTAATTTGAG 59.149 37.500 20.66 0.00 44.88 3.02
241 242 4.615121 GTGAAGCGAACGCATTTAATTTGA 59.385 37.500 20.66 0.00 44.88 2.69
242 243 4.381270 TGTGAAGCGAACGCATTTAATTTG 59.619 37.500 20.66 0.00 44.88 2.32
243 244 4.541779 TGTGAAGCGAACGCATTTAATTT 58.458 34.783 20.66 4.78 44.88 1.82
244 245 4.153958 TGTGAAGCGAACGCATTTAATT 57.846 36.364 20.66 5.48 44.88 1.40
245 246 3.822594 TGTGAAGCGAACGCATTTAAT 57.177 38.095 20.66 0.00 44.88 1.40
246 247 3.187432 TCATGTGAAGCGAACGCATTTAA 59.813 39.130 20.66 4.43 44.88 1.52
247 248 2.739379 TCATGTGAAGCGAACGCATTTA 59.261 40.909 20.66 6.82 44.88 1.40
248 249 1.535028 TCATGTGAAGCGAACGCATTT 59.465 42.857 20.66 7.61 44.88 2.32
249 250 1.155889 TCATGTGAAGCGAACGCATT 58.844 45.000 20.66 11.75 44.88 3.56
250 251 1.155889 TTCATGTGAAGCGAACGCAT 58.844 45.000 20.66 9.38 44.88 4.73
251 252 1.155889 ATTCATGTGAAGCGAACGCA 58.844 45.000 20.66 0.31 44.88 5.24
252 253 3.592381 ATATTCATGTGAAGCGAACGC 57.408 42.857 11.31 11.31 37.48 4.84
253 254 9.644993 TTAATAAATATTCATGTGAAGCGAACG 57.355 29.630 1.65 0.00 37.48 3.95
280 281 9.841295 AGAAAGTACCACATAAACAGAAAAGTA 57.159 29.630 0.00 0.00 0.00 2.24
281 282 8.747538 AGAAAGTACCACATAAACAGAAAAGT 57.252 30.769 0.00 0.00 0.00 2.66
328 329 9.197306 GGGTAGTAATTTGTCCCTTTAATTGAT 57.803 33.333 0.00 0.00 35.63 2.57
329 330 8.395605 AGGGTAGTAATTTGTCCCTTTAATTGA 58.604 33.333 0.00 0.00 45.19 2.57
330 331 8.589701 AGGGTAGTAATTTGTCCCTTTAATTG 57.410 34.615 0.00 0.00 45.19 2.32
338 339 8.762481 ATCAATAAAGGGTAGTAATTTGTCCC 57.238 34.615 0.00 0.00 38.50 4.46
353 354 9.958180 AAAATTTTGGTCCCTAATCAATAAAGG 57.042 29.630 1.75 0.00 0.00 3.11
359 360 9.859152 AAATGAAAAATTTTGGTCCCTAATCAA 57.141 25.926 3.73 0.00 0.00 2.57
360 361 9.859152 AAAATGAAAAATTTTGGTCCCTAATCA 57.141 25.926 3.73 1.61 30.84 2.57
363 364 9.785982 CCTAAAATGAAAAATTTTGGTCCCTAA 57.214 29.630 3.73 0.00 33.73 2.69
364 365 7.880713 GCCTAAAATGAAAAATTTTGGTCCCTA 59.119 33.333 3.73 0.00 33.73 3.53
365 366 6.714810 GCCTAAAATGAAAAATTTTGGTCCCT 59.285 34.615 3.73 0.00 33.73 4.20
366 367 6.714810 AGCCTAAAATGAAAAATTTTGGTCCC 59.285 34.615 3.73 0.00 33.73 4.46
367 368 7.308529 CCAGCCTAAAATGAAAAATTTTGGTCC 60.309 37.037 3.73 0.00 33.73 4.46
368 369 7.584108 CCAGCCTAAAATGAAAAATTTTGGTC 58.416 34.615 3.73 0.00 33.73 4.02
369 370 6.016360 GCCAGCCTAAAATGAAAAATTTTGGT 60.016 34.615 3.73 0.00 33.73 3.67
370 371 6.380995 GCCAGCCTAAAATGAAAAATTTTGG 58.619 36.000 3.73 0.00 33.73 3.28
371 372 6.380995 GGCCAGCCTAAAATGAAAAATTTTG 58.619 36.000 3.73 0.00 33.73 2.44
372 373 5.181056 CGGCCAGCCTAAAATGAAAAATTTT 59.819 36.000 2.24 0.00 35.62 1.82
373 374 4.694982 CGGCCAGCCTAAAATGAAAAATTT 59.305 37.500 2.24 0.00 0.00 1.82
374 375 4.252878 CGGCCAGCCTAAAATGAAAAATT 58.747 39.130 2.24 0.00 0.00 1.82
375 376 3.860641 CGGCCAGCCTAAAATGAAAAAT 58.139 40.909 2.24 0.00 0.00 1.82
376 377 2.611722 GCGGCCAGCCTAAAATGAAAAA 60.612 45.455 2.24 0.00 40.81 1.94
377 378 1.067213 GCGGCCAGCCTAAAATGAAAA 60.067 47.619 2.24 0.00 40.81 2.29
378 379 0.530288 GCGGCCAGCCTAAAATGAAA 59.470 50.000 2.24 0.00 40.81 2.69
379 380 2.188912 GCGGCCAGCCTAAAATGAA 58.811 52.632 2.24 0.00 40.81 2.57
380 381 3.918544 GCGGCCAGCCTAAAATGA 58.081 55.556 2.24 0.00 40.81 2.57
423 424 2.409651 GACGAGTCTAGCCAGCGG 59.590 66.667 0.00 0.00 0.00 5.52
424 425 2.409651 GGACGAGTCTAGCCAGCG 59.590 66.667 3.09 0.00 0.00 5.18
425 426 2.409651 CGGACGAGTCTAGCCAGC 59.590 66.667 3.09 0.00 0.00 4.85
426 427 1.716826 GACCGGACGAGTCTAGCCAG 61.717 65.000 9.46 0.00 0.00 4.85
427 428 1.748122 GACCGGACGAGTCTAGCCA 60.748 63.158 9.46 0.00 0.00 4.75
428 429 1.031029 AAGACCGGACGAGTCTAGCC 61.031 60.000 9.46 0.00 43.77 3.93
429 430 0.810016 AAAGACCGGACGAGTCTAGC 59.190 55.000 9.46 0.00 43.77 3.42
430 431 3.572604 AAAAAGACCGGACGAGTCTAG 57.427 47.619 9.46 0.00 43.77 2.43
452 453 4.670621 CGGATGTTGTTTTCTTTTCTCACG 59.329 41.667 0.00 0.00 0.00 4.35
454 455 5.008613 CCTCGGATGTTGTTTTCTTTTCTCA 59.991 40.000 0.00 0.00 0.00 3.27
457 458 3.981416 GCCTCGGATGTTGTTTTCTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
512 513 2.665185 GAAGTGGCGCTCGTTGGT 60.665 61.111 7.64 0.00 0.00 3.67
578 585 0.537653 GAAGGAAAGACGAGGGAGGG 59.462 60.000 0.00 0.00 0.00 4.30
579 586 0.537653 GGAAGGAAAGACGAGGGAGG 59.462 60.000 0.00 0.00 0.00 4.30
588 595 2.114506 AGAAGAGGAGGGGAAGGAAAGA 59.885 50.000 0.00 0.00 0.00 2.52
637 647 2.229062 CGTTTGGTACTCTCTGCTCAGA 59.771 50.000 0.00 0.00 35.85 3.27
639 649 1.336887 GCGTTTGGTACTCTCTGCTCA 60.337 52.381 0.00 0.00 0.00 4.26
808 822 0.777446 TTCAAGGGAGGTGGGGAAAG 59.223 55.000 0.00 0.00 0.00 2.62
910 924 3.181475 TGGATAGAGTGGAAATCGACTGC 60.181 47.826 2.65 0.00 35.11 4.40
1009 1023 2.045926 ACCACTTGCATCTCCGGC 60.046 61.111 0.00 0.00 0.00 6.13
1047 1061 2.030457 GCAAACATATGAACCGAGTCCG 59.970 50.000 10.38 0.00 0.00 4.79
1089 1103 3.480470 GGTGTATTCATGGCTGCAGTAT 58.520 45.455 16.64 7.68 0.00 2.12
1249 1263 5.768317 CCTTCAGAGAAATGGCGTTTAAAA 58.232 37.500 4.35 0.00 0.00 1.52
1257 1271 1.888512 TGTTGCCTTCAGAGAAATGGC 59.111 47.619 0.00 0.00 43.49 4.40
1278 1292 7.012327 TGTTCGATTTGATGGCTAGGATTAAAG 59.988 37.037 0.00 0.00 0.00 1.85
1332 1346 7.497249 GGCTTCAGATAACAGATAACTGATTGT 59.503 37.037 7.05 0.00 46.03 2.71
1362 1376 4.881850 GGTAGGATTGACTGGTAACCATTG 59.118 45.833 0.00 0.00 30.82 2.82
1366 1380 4.563140 TTGGTAGGATTGACTGGTAACC 57.437 45.455 0.00 0.00 0.00 2.85
1411 1425 1.511850 TGCGTGTGACAGGAGATTTG 58.488 50.000 9.74 0.00 0.00 2.32
1507 1524 8.080417 CCTTGCTGTCCATGATATTATCAAAAG 58.920 37.037 10.30 0.94 43.50 2.27
1722 1739 6.757010 CACACTATCCCAGTAACACACTTATC 59.243 42.308 0.00 0.00 34.98 1.75
1723 1740 6.212791 ACACACTATCCCAGTAACACACTTAT 59.787 38.462 0.00 0.00 34.98 1.73
1724 1741 5.541101 ACACACTATCCCAGTAACACACTTA 59.459 40.000 0.00 0.00 34.98 2.24
1726 1743 3.901844 ACACACTATCCCAGTAACACACT 59.098 43.478 0.00 0.00 34.98 3.55
1731 1748 5.046807 ACCAGTAACACACTATCCCAGTAAC 60.047 44.000 0.00 0.00 34.98 2.50
1732 1749 5.088730 ACCAGTAACACACTATCCCAGTAA 58.911 41.667 0.00 0.00 34.98 2.24
1733 1750 4.680407 ACCAGTAACACACTATCCCAGTA 58.320 43.478 0.00 0.00 34.98 2.74
1734 1751 3.514309 GACCAGTAACACACTATCCCAGT 59.486 47.826 0.00 0.00 34.98 4.00
1735 1752 3.769844 AGACCAGTAACACACTATCCCAG 59.230 47.826 0.00 0.00 34.98 4.45
1736 1753 3.786553 AGACCAGTAACACACTATCCCA 58.213 45.455 0.00 0.00 34.98 4.37
1770 1808 4.649088 ACATTCATGGCATCACATTCTG 57.351 40.909 0.00 0.00 0.00 3.02
1905 2003 6.499172 TCTAAAAGAGCATAGACACGATCAG 58.501 40.000 0.00 0.00 0.00 2.90
2136 2237 7.123247 CAGGTTTGATATCCCAAAATCTCAGTT 59.877 37.037 0.00 0.00 37.72 3.16
2137 2238 6.604795 CAGGTTTGATATCCCAAAATCTCAGT 59.395 38.462 0.00 0.00 37.72 3.41
2259 2360 7.013846 TCCGAACAAAAATCTATCCAAACAGTT 59.986 33.333 0.00 0.00 0.00 3.16
2260 2361 6.488683 TCCGAACAAAAATCTATCCAAACAGT 59.511 34.615 0.00 0.00 0.00 3.55
2261 2362 6.801862 GTCCGAACAAAAATCTATCCAAACAG 59.198 38.462 0.00 0.00 0.00 3.16
2262 2363 6.263392 TGTCCGAACAAAAATCTATCCAAACA 59.737 34.615 0.00 0.00 30.70 2.83
2263 2364 6.674066 TGTCCGAACAAAAATCTATCCAAAC 58.326 36.000 0.00 0.00 30.70 2.93
2264 2365 6.488683 ACTGTCCGAACAAAAATCTATCCAAA 59.511 34.615 0.00 0.00 34.24 3.28
2357 2458 4.412060 TTTGGGGATATCAAACCTGGTT 57.588 40.909 6.18 6.18 0.00 3.67
2429 2533 1.485066 CTCCACACCCCTATACCACAC 59.515 57.143 0.00 0.00 0.00 3.82
2430 2534 1.874129 CTCCACACCCCTATACCACA 58.126 55.000 0.00 0.00 0.00 4.17
2431 2535 0.468648 GCTCCACACCCCTATACCAC 59.531 60.000 0.00 0.00 0.00 4.16
2432 2536 0.043485 TGCTCCACACCCCTATACCA 59.957 55.000 0.00 0.00 0.00 3.25
2433 2537 0.468648 GTGCTCCACACCCCTATACC 59.531 60.000 0.00 0.00 44.02 2.73
2640 2744 3.316308 AGCACTCAAACCTTGTTCATGAC 59.684 43.478 0.00 0.00 0.00 3.06
3024 3128 0.473755 ATGCCTCCAGTTGTGTCACA 59.526 50.000 0.18 0.18 0.00 3.58
3034 3138 2.739932 CGTACCTCAGAAATGCCTCCAG 60.740 54.545 0.00 0.00 0.00 3.86
3074 3178 1.416401 ACCGGTGGACCATAAGCTATG 59.584 52.381 6.12 0.00 35.14 2.23
3486 3591 4.641989 AGCTACGATTTCAATGCTCCAATT 59.358 37.500 0.00 0.00 0.00 2.32
3508 3613 9.250624 GCTAATTACAGATACAGAAACCTACAG 57.749 37.037 0.00 0.00 0.00 2.74
3531 3638 8.087750 CAGTAGGATTTTTGTTTCATTTGGCTA 58.912 33.333 0.00 0.00 0.00 3.93
3535 3642 7.384932 GGACCAGTAGGATTTTTGTTTCATTTG 59.615 37.037 0.00 0.00 38.69 2.32
3568 3675 4.562143 GGGTACCGTAAAAGAGCTCTGAAA 60.562 45.833 19.06 2.20 40.86 2.69
3569 3676 3.056322 GGGTACCGTAAAAGAGCTCTGAA 60.056 47.826 19.06 2.61 40.86 3.02
3570 3677 2.494870 GGGTACCGTAAAAGAGCTCTGA 59.505 50.000 19.06 2.75 40.86 3.27
3571 3678 2.889852 GGGTACCGTAAAAGAGCTCTG 58.110 52.381 19.06 5.93 40.86 3.35
3994 4133 1.073763 CACACATGGAGAAAGGGGTCA 59.926 52.381 0.00 0.00 0.00 4.02
4586 9278 2.100749 CACCCAACCAAGTCTGTTTTCC 59.899 50.000 0.00 0.00 0.00 3.13
4619 9313 4.617959 CATGCATCATCAAGTCCATTTCC 58.382 43.478 0.00 0.00 0.00 3.13
4806 9505 8.186163 AGAAAAACACTTTCTTAAAAGGTACGG 58.814 33.333 3.24 0.00 45.15 4.02
4953 9652 5.999044 AGACAGGAACAATCTATCTGCAAT 58.001 37.500 0.00 0.00 0.00 3.56
4969 9668 6.686378 GCATGGTGATAATTCAGTAGACAGGA 60.686 42.308 0.00 0.00 30.85 3.86
5001 9700 8.088365 AGTAAGTTCCCTGCACAATTTAAAATC 58.912 33.333 0.00 0.00 0.00 2.17
5097 9797 8.878769 GTCTTTGTTTGCCAAAATAAGAAAAGA 58.121 29.630 13.61 9.47 42.31 2.52
5207 9908 1.807742 CTGTTTGATTCGGGCGGTTTA 59.192 47.619 0.00 0.00 0.00 2.01
5248 9953 3.568007 ACTTTGAGTGTGTGTTTGTGTGT 59.432 39.130 0.00 0.00 0.00 3.72
5249 9954 4.158384 GACTTTGAGTGTGTGTTTGTGTG 58.842 43.478 0.00 0.00 0.00 3.82
5498 10217 1.273327 GTGGCTATTTGCAGCTTTGGT 59.727 47.619 0.00 0.00 45.15 3.67
5564 10283 2.363788 TCGCAACAAGCTCGTTATCT 57.636 45.000 0.00 0.00 42.61 1.98
5565 10284 3.658351 ATTCGCAACAAGCTCGTTATC 57.342 42.857 0.00 0.00 42.61 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.