Multiple sequence alignment - TraesCS3D01G303000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G303000 chr3D 100.000 4775 0 0 1 4775 418100329 418105103 0.000000e+00 8818.0
1 TraesCS3D01G303000 chr3D 97.200 1000 28 0 1 1000 417870232 417871231 0.000000e+00 1692.0
2 TraesCS3D01G303000 chr3D 81.567 1340 191 33 2821 4126 577507699 577506382 0.000000e+00 1055.0
3 TraesCS3D01G303000 chr3D 97.167 600 17 0 1 600 417956113 417956712 0.000000e+00 1014.0
4 TraesCS3D01G303000 chr3D 95.922 613 25 0 388 1000 154854748 154854136 0.000000e+00 994.0
5 TraesCS3D01G303000 chr3D 95.922 613 24 1 388 1000 427172140 427171529 0.000000e+00 992.0
6 TraesCS3D01G303000 chr3D 80.675 1304 182 46 1003 2276 577509793 577508530 0.000000e+00 948.0
7 TraesCS3D01G303000 chr3D 86.111 72 7 1 3947 4015 4499088 4499017 1.840000e-09 75.0
8 TraesCS3D01G303000 chr7D 96.804 657 17 4 4122 4775 1551269 1551924 0.000000e+00 1094.0
9 TraesCS3D01G303000 chr7D 96.784 653 18 3 4125 4775 181823 182474 0.000000e+00 1086.0
10 TraesCS3D01G303000 chr7D 95.922 613 25 0 388 1000 82593294 82592682 0.000000e+00 994.0
11 TraesCS3D01G303000 chrUn 96.369 661 18 6 4119 4775 89015353 89016011 0.000000e+00 1083.0
12 TraesCS3D01G303000 chr1D 96.183 655 21 3 4125 4775 8098013 8097359 0.000000e+00 1068.0
13 TraesCS3D01G303000 chr1D 95.765 614 26 0 388 1001 489363493 489364106 0.000000e+00 990.0
14 TraesCS3D01G303000 chr6D 95.922 613 25 0 388 1000 243459743 243460355 0.000000e+00 994.0
15 TraesCS3D01G303000 chr2D 95.922 613 24 1 388 1000 471004243 471003632 0.000000e+00 992.0
16 TraesCS3D01G303000 chr4D 95.759 613 26 0 388 1000 60908256 60907644 0.000000e+00 989.0
17 TraesCS3D01G303000 chr4D 95.759 613 26 0 388 1000 303788859 303788247 0.000000e+00 989.0
18 TraesCS3D01G303000 chr4D 97.297 37 1 0 9 45 274547914 274547878 3.990000e-06 63.9
19 TraesCS3D01G303000 chr3A 86.108 871 90 17 2866 3715 713129885 713129025 0.000000e+00 909.0
20 TraesCS3D01G303000 chr3A 81.464 1052 155 24 1003 2033 713135201 713134169 0.000000e+00 826.0
21 TraesCS3D01G303000 chr3A 90.000 80 8 0 2716 2795 713130299 713130220 2.350000e-18 104.0
22 TraesCS3D01G303000 chr6B 76.514 1618 280 71 1014 2583 221813961 221812396 0.000000e+00 791.0
23 TraesCS3D01G303000 chr6B 81.269 1009 145 25 2711 3703 221812170 221811190 0.000000e+00 776.0
24 TraesCS3D01G303000 chr6B 78.509 1261 202 42 1079 2307 221407691 221406468 0.000000e+00 763.0
25 TraesCS3D01G303000 chr6B 72.292 397 83 22 1364 1752 252095803 252096180 1.090000e-16 99.0
26 TraesCS3D01G303000 chr6B 97.872 47 0 1 344 389 633012695 633012741 3.960000e-11 80.5
27 TraesCS3D01G303000 chr6B 97.826 46 0 1 344 388 633043912 633043867 1.420000e-10 78.7
28 TraesCS3D01G303000 chr5B 89.474 551 48 4 4234 4775 431402047 431401498 0.000000e+00 688.0
29 TraesCS3D01G303000 chr5B 82.968 593 48 13 4115 4697 139602709 139603258 2.000000e-133 486.0
30 TraesCS3D01G303000 chr6A 86.364 660 46 14 4125 4775 560837818 560837194 0.000000e+00 680.0
31 TraesCS3D01G303000 chr5A 86.623 613 33 13 4175 4775 568113866 568114441 2.420000e-177 632.0
32 TraesCS3D01G303000 chr5A 84.662 665 51 19 4125 4775 11414837 11415464 2.440000e-172 616.0
33 TraesCS3D01G303000 chr4A 84.615 663 55 14 4125 4775 33064332 33064959 2.440000e-172 616.0
34 TraesCS3D01G303000 chr4A 82.243 107 12 5 9 115 210202551 210202452 8.510000e-13 86.1
35 TraesCS3D01G303000 chr4B 89.834 482 34 8 4231 4697 617203787 617204268 5.290000e-169 604.0
36 TraesCS3D01G303000 chr4B 88.557 201 18 2 188 388 398087858 398088053 6.180000e-59 239.0
37 TraesCS3D01G303000 chr4B 77.612 201 20 16 9 191 273454758 273454565 1.090000e-16 99.0
38 TraesCS3D01G303000 chr2A 100.000 43 0 0 347 389 484253186 484253144 3.960000e-11 80.5
39 TraesCS3D01G303000 chr1B 95.918 49 2 0 350 398 321680926 321680878 3.960000e-11 80.5
40 TraesCS3D01G303000 chr5D 90.000 60 4 2 329 388 422228760 422228703 5.120000e-10 76.8
41 TraesCS3D01G303000 chr1A 92.308 52 3 1 350 401 12042125 12042175 6.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G303000 chr3D 418100329 418105103 4774 False 8818.0 8818 100.000000 1 4775 1 chr3D.!!$F3 4774
1 TraesCS3D01G303000 chr3D 417870232 417871231 999 False 1692.0 1692 97.200000 1 1000 1 chr3D.!!$F1 999
2 TraesCS3D01G303000 chr3D 417956113 417956712 599 False 1014.0 1014 97.167000 1 600 1 chr3D.!!$F2 599
3 TraesCS3D01G303000 chr3D 577506382 577509793 3411 True 1001.5 1055 81.121000 1003 4126 2 chr3D.!!$R4 3123
4 TraesCS3D01G303000 chr3D 154854136 154854748 612 True 994.0 994 95.922000 388 1000 1 chr3D.!!$R2 612
5 TraesCS3D01G303000 chr3D 427171529 427172140 611 True 992.0 992 95.922000 388 1000 1 chr3D.!!$R3 612
6 TraesCS3D01G303000 chr7D 1551269 1551924 655 False 1094.0 1094 96.804000 4122 4775 1 chr7D.!!$F2 653
7 TraesCS3D01G303000 chr7D 181823 182474 651 False 1086.0 1086 96.784000 4125 4775 1 chr7D.!!$F1 650
8 TraesCS3D01G303000 chr7D 82592682 82593294 612 True 994.0 994 95.922000 388 1000 1 chr7D.!!$R1 612
9 TraesCS3D01G303000 chrUn 89015353 89016011 658 False 1083.0 1083 96.369000 4119 4775 1 chrUn.!!$F1 656
10 TraesCS3D01G303000 chr1D 8097359 8098013 654 True 1068.0 1068 96.183000 4125 4775 1 chr1D.!!$R1 650
11 TraesCS3D01G303000 chr1D 489363493 489364106 613 False 990.0 990 95.765000 388 1001 1 chr1D.!!$F1 613
12 TraesCS3D01G303000 chr6D 243459743 243460355 612 False 994.0 994 95.922000 388 1000 1 chr6D.!!$F1 612
13 TraesCS3D01G303000 chr2D 471003632 471004243 611 True 992.0 992 95.922000 388 1000 1 chr2D.!!$R1 612
14 TraesCS3D01G303000 chr4D 60907644 60908256 612 True 989.0 989 95.759000 388 1000 1 chr4D.!!$R1 612
15 TraesCS3D01G303000 chr4D 303788247 303788859 612 True 989.0 989 95.759000 388 1000 1 chr4D.!!$R3 612
16 TraesCS3D01G303000 chr3A 713129025 713135201 6176 True 613.0 909 85.857333 1003 3715 3 chr3A.!!$R1 2712
17 TraesCS3D01G303000 chr6B 221811190 221813961 2771 True 783.5 791 78.891500 1014 3703 2 chr6B.!!$R3 2689
18 TraesCS3D01G303000 chr6B 221406468 221407691 1223 True 763.0 763 78.509000 1079 2307 1 chr6B.!!$R1 1228
19 TraesCS3D01G303000 chr5B 431401498 431402047 549 True 688.0 688 89.474000 4234 4775 1 chr5B.!!$R1 541
20 TraesCS3D01G303000 chr5B 139602709 139603258 549 False 486.0 486 82.968000 4115 4697 1 chr5B.!!$F1 582
21 TraesCS3D01G303000 chr6A 560837194 560837818 624 True 680.0 680 86.364000 4125 4775 1 chr6A.!!$R1 650
22 TraesCS3D01G303000 chr5A 568113866 568114441 575 False 632.0 632 86.623000 4175 4775 1 chr5A.!!$F2 600
23 TraesCS3D01G303000 chr5A 11414837 11415464 627 False 616.0 616 84.662000 4125 4775 1 chr5A.!!$F1 650
24 TraesCS3D01G303000 chr4A 33064332 33064959 627 False 616.0 616 84.615000 4125 4775 1 chr4A.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 3.982730 AGGAATATCATGTCCCATGTCCA 59.017 43.478 11.75 0.0 34.13 4.02 F
1831 1884 0.101219 GTCCTTCAATGAATGCCCGC 59.899 55.000 0.00 0.0 0.00 6.13 F
3602 7330 0.179048 CAGGCTATCCGTGGCATTCA 60.179 55.000 0.00 0.0 37.47 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 5441 0.042131 TATGAACCAGGGACGAGGGT 59.958 55.0 0.00 0.0 36.19 4.34 R
3648 7376 0.165727 CAATTTGACGCGCTACAGCA 59.834 50.0 5.73 0.0 42.21 4.41 R
4574 8334 1.629345 CGATGTGCATGAGCGTGTGT 61.629 55.0 0.00 0.0 46.23 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 3.982730 AGGAATATCATGTCCCATGTCCA 59.017 43.478 11.75 0.00 34.13 4.02
416 417 6.092122 TCCTTATGCAAAGTACATGAAAGACG 59.908 38.462 0.00 0.00 0.00 4.18
1049 1050 3.573967 GGGAGTGATGGCAGAAAAAGAAA 59.426 43.478 0.00 0.00 0.00 2.52
1052 1053 4.218312 AGTGATGGCAGAAAAAGAAAGGT 58.782 39.130 0.00 0.00 0.00 3.50
1054 1055 5.129320 AGTGATGGCAGAAAAAGAAAGGTTT 59.871 36.000 0.00 0.00 0.00 3.27
1057 1058 5.159273 TGGCAGAAAAAGAAAGGTTTGTT 57.841 34.783 0.00 0.00 0.00 2.83
1058 1059 5.175127 TGGCAGAAAAAGAAAGGTTTGTTC 58.825 37.500 0.00 0.00 0.00 3.18
1063 1064 7.024768 CAGAAAAAGAAAGGTTTGTTCGTACA 58.975 34.615 0.00 0.00 0.00 2.90
1064 1068 7.007995 CAGAAAAAGAAAGGTTTGTTCGTACAC 59.992 37.037 0.00 0.00 32.98 2.90
1065 1069 5.883503 AAAGAAAGGTTTGTTCGTACACA 57.116 34.783 0.00 0.00 32.98 3.72
1068 1072 5.875930 AGAAAGGTTTGTTCGTACACAAAG 58.124 37.500 10.78 0.00 45.23 2.77
1071 1075 3.875134 AGGTTTGTTCGTACACAAAGGAG 59.125 43.478 10.78 0.00 45.23 3.69
1072 1076 3.624410 GGTTTGTTCGTACACAAAGGAGT 59.376 43.478 10.78 0.00 45.23 3.85
1077 1081 5.526115 TGTTCGTACACAAAGGAGTTAGAG 58.474 41.667 0.00 0.00 0.00 2.43
1112 1116 6.949352 ATGTGAGTCACTGATTTCAAGTTT 57.051 33.333 23.29 0.00 35.11 2.66
1129 1138 9.607988 TTTCAAGTTTTTATTCTTCCCTTTTCC 57.392 29.630 0.00 0.00 0.00 3.13
1130 1139 8.547481 TCAAGTTTTTATTCTTCCCTTTTCCT 57.453 30.769 0.00 0.00 0.00 3.36
1136 1145 2.978156 TCTTCCCTTTTCCTGCATGT 57.022 45.000 0.00 0.00 0.00 3.21
1153 1165 8.815912 TCCTGCATGTATATAGCTCAAATAGAA 58.184 33.333 0.00 0.00 0.00 2.10
1203 1216 7.739498 TCTTTAACTAGTGCGAAAGGAAATT 57.261 32.000 18.19 0.00 31.24 1.82
1204 1217 8.161699 TCTTTAACTAGTGCGAAAGGAAATTT 57.838 30.769 18.19 0.00 31.24 1.82
1239 1252 1.602311 CTCAGGCTATTGTGGATGCC 58.398 55.000 0.00 0.00 45.21 4.40
1250 1263 0.804989 GTGGATGCCCGACTTTTCAG 59.195 55.000 0.00 0.00 34.29 3.02
1252 1265 0.960364 GGATGCCCGACTTTTCAGCA 60.960 55.000 0.00 0.00 35.67 4.41
1283 1296 4.406649 CCCCCATCAAGTTATTTCAAGCAT 59.593 41.667 0.00 0.00 0.00 3.79
1290 1303 9.211485 CATCAAGTTATTTCAAGCATTCCTTTT 57.789 29.630 0.00 0.00 0.00 2.27
1291 1304 8.592105 TCAAGTTATTTCAAGCATTCCTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
1296 1309 9.260002 GTTATTTCAAGCATTCCTTTTGAAGAA 57.740 29.630 0.00 0.00 40.63 2.52
1322 1335 2.641815 AGTTTGGTGATTCAGGCTCTCT 59.358 45.455 0.00 0.00 0.00 3.10
1333 1346 4.767578 TCAGGCTCTCTTGATAAAGCAT 57.232 40.909 0.00 0.00 36.47 3.79
1348 1361 1.838112 AGCATTTCAAGCAATCGGGA 58.162 45.000 0.00 0.00 0.00 5.14
1349 1362 1.747355 AGCATTTCAAGCAATCGGGAG 59.253 47.619 0.00 0.00 0.00 4.30
1363 1376 0.179073 CGGGAGCACCAAGGACATAG 60.179 60.000 1.58 0.00 40.22 2.23
1378 1391 5.211973 AGGACATAGCTCCAGATTTGTCTA 58.788 41.667 12.99 0.00 40.51 2.59
1395 1408 5.139435 TGTCTACCATTGTTGTCTCTCTG 57.861 43.478 0.00 0.00 0.00 3.35
1445 1463 5.149973 TGCTTATGCATTGTCCACATTTT 57.850 34.783 3.54 0.00 45.31 1.82
1446 1464 5.170021 TGCTTATGCATTGTCCACATTTTC 58.830 37.500 3.54 0.00 45.31 2.29
1460 1478 5.711506 TCCACATTTTCATGTACTCATTGCT 59.288 36.000 0.00 0.00 42.14 3.91
1461 1479 5.803461 CCACATTTTCATGTACTCATTGCTG 59.197 40.000 0.00 0.00 42.14 4.41
1462 1480 5.287752 CACATTTTCATGTACTCATTGCTGC 59.712 40.000 0.00 0.00 42.14 5.25
1463 1481 5.184479 ACATTTTCATGTACTCATTGCTGCT 59.816 36.000 0.00 0.00 42.24 4.24
1464 1482 5.710513 TTTTCATGTACTCATTGCTGCTT 57.289 34.783 0.00 0.00 31.15 3.91
1465 1483 5.710513 TTTCATGTACTCATTGCTGCTTT 57.289 34.783 0.00 0.00 31.15 3.51
1466 1484 4.690184 TCATGTACTCATTGCTGCTTTG 57.310 40.909 0.00 0.00 31.15 2.77
1476 1498 4.337836 TCATTGCTGCTTTGTTGTTAGTGA 59.662 37.500 0.00 0.00 0.00 3.41
1499 1521 2.094675 TGACTCACGATCTCATGCAGA 58.905 47.619 0.00 0.00 34.78 4.26
1500 1522 2.098770 TGACTCACGATCTCATGCAGAG 59.901 50.000 0.00 0.00 46.14 3.35
1506 1528 3.505293 CACGATCTCATGCAGAGGATAGA 59.495 47.826 11.63 0.56 44.81 1.98
1552 1574 1.978580 CTCTACCACCTGGGACAACTT 59.021 52.381 0.00 0.00 38.70 2.66
1553 1575 1.975680 TCTACCACCTGGGACAACTTC 59.024 52.381 0.00 0.00 38.70 3.01
1554 1576 1.003233 CTACCACCTGGGACAACTTCC 59.997 57.143 0.00 0.00 45.00 3.46
1608 1630 5.215160 CGTTTGGTTGAGGAATTTGAGAAG 58.785 41.667 0.00 0.00 0.00 2.85
1618 1640 8.327941 TGAGGAATTTGAGAAGTACAGAAATG 57.672 34.615 0.00 0.00 0.00 2.32
1651 1673 1.168714 GAGGGTTGGTGCTGCTAAAG 58.831 55.000 0.00 0.00 0.00 1.85
1652 1674 0.478507 AGGGTTGGTGCTGCTAAAGT 59.521 50.000 0.00 0.00 0.00 2.66
1653 1675 0.598065 GGGTTGGTGCTGCTAAAGTG 59.402 55.000 0.00 0.00 0.00 3.16
1654 1676 1.318576 GGTTGGTGCTGCTAAAGTGT 58.681 50.000 0.00 0.00 0.00 3.55
1655 1677 1.681264 GGTTGGTGCTGCTAAAGTGTT 59.319 47.619 0.00 0.00 0.00 3.32
1656 1678 2.882137 GGTTGGTGCTGCTAAAGTGTTA 59.118 45.455 0.00 0.00 0.00 2.41
1657 1679 3.316868 GGTTGGTGCTGCTAAAGTGTTAA 59.683 43.478 0.00 0.00 0.00 2.01
1658 1680 4.022329 GGTTGGTGCTGCTAAAGTGTTAAT 60.022 41.667 0.00 0.00 0.00 1.40
1659 1681 5.154222 GTTGGTGCTGCTAAAGTGTTAATC 58.846 41.667 0.00 0.00 0.00 1.75
1660 1682 4.393834 TGGTGCTGCTAAAGTGTTAATCA 58.606 39.130 0.00 0.00 0.00 2.57
1661 1683 5.009631 TGGTGCTGCTAAAGTGTTAATCAT 58.990 37.500 0.00 0.00 0.00 2.45
1662 1684 5.476599 TGGTGCTGCTAAAGTGTTAATCATT 59.523 36.000 0.00 0.00 0.00 2.57
1663 1685 6.657117 TGGTGCTGCTAAAGTGTTAATCATTA 59.343 34.615 0.00 0.00 0.00 1.90
1664 1686 7.339212 TGGTGCTGCTAAAGTGTTAATCATTAT 59.661 33.333 0.00 0.00 0.00 1.28
1665 1687 8.836413 GGTGCTGCTAAAGTGTTAATCATTATA 58.164 33.333 0.00 0.00 0.00 0.98
1740 1781 8.266392 ACTTCTTTTTATCTCTGCAGATTGAG 57.734 34.615 18.63 5.53 40.18 3.02
1757 1798 3.658398 AGGTGTGCCTTCCAGATTG 57.342 52.632 0.00 0.00 44.18 2.67
1766 1807 4.941263 GTGCCTTCCAGATTGTACACATAA 59.059 41.667 0.00 0.00 0.00 1.90
1767 1808 4.941263 TGCCTTCCAGATTGTACACATAAC 59.059 41.667 0.00 0.00 0.00 1.89
1795 1836 7.022496 TGGGTTCTTGGGACTATATGATGATA 58.978 38.462 0.00 0.00 0.00 2.15
1817 1858 7.931407 TGATAATATTGCTATTGTCACGTCCTT 59.069 33.333 0.00 0.00 39.27 3.36
1819 1860 3.394674 TTGCTATTGTCACGTCCTTCA 57.605 42.857 0.00 0.00 0.00 3.02
1824 1865 4.391830 GCTATTGTCACGTCCTTCAATGAA 59.608 41.667 11.61 0.00 33.48 2.57
1825 1866 5.065218 GCTATTGTCACGTCCTTCAATGAAT 59.935 40.000 0.00 0.00 33.48 2.57
1826 1867 4.747540 TTGTCACGTCCTTCAATGAATG 57.252 40.909 0.00 0.00 0.00 2.67
1831 1884 0.101219 GTCCTTCAATGAATGCCCGC 59.899 55.000 0.00 0.00 0.00 6.13
1835 1888 0.179105 TTCAATGAATGCCCGCATGC 60.179 50.000 7.91 7.91 36.68 4.06
1854 1907 4.236527 TGCTGTCTGTCCTGTAGATCTA 57.763 45.455 0.00 0.00 0.00 1.98
1860 1913 5.061179 GTCTGTCCTGTAGATCTAGACCTC 58.939 50.000 14.68 0.00 0.00 3.85
1861 1914 4.062293 CTGTCCTGTAGATCTAGACCTCG 58.938 52.174 14.68 0.00 0.00 4.63
1871 1924 1.076923 TAGACCTCGAGGCACCTCC 60.077 63.158 31.56 13.04 39.77 4.30
1886 1942 3.493524 GCACCTCCTCTTGATACTAAGGC 60.494 52.174 0.00 0.00 0.00 4.35
1892 1948 6.268847 CCTCCTCTTGATACTAAGGCAATAGT 59.731 42.308 7.90 7.90 39.41 2.12
1905 1961 1.804372 GCAATAGTAGCTGCTCGTGCT 60.804 52.381 23.72 3.36 43.79 4.40
1909 1965 0.318441 AGTAGCTGCTCGTGCTTTCA 59.682 50.000 4.91 0.00 41.46 2.69
1910 1966 1.148310 GTAGCTGCTCGTGCTTTCAA 58.852 50.000 4.91 0.00 41.46 2.69
1927 1983 0.808125 CAAATCGGGCCGTTTGATGA 59.192 50.000 31.82 14.28 37.48 2.92
1971 2027 3.357079 GGCCGTGCACACTGGAAG 61.357 66.667 18.64 0.00 42.29 3.46
1978 2034 1.610522 GTGCACACTGGAAGCAAATCT 59.389 47.619 13.17 0.00 40.35 2.40
2011 2069 7.196331 ACACTGTTGATTGCTTTCTTACTTTC 58.804 34.615 0.00 0.00 0.00 2.62
2017 2075 5.301551 TGATTGCTTTCTTACTTTCTGGCAA 59.698 36.000 0.00 0.00 41.49 4.52
2033 2091 3.149196 TGGCAAGATGGAAGACTTGAAC 58.851 45.455 0.00 0.00 43.98 3.18
2039 5291 6.385033 CAAGATGGAAGACTTGAACCAAATC 58.615 40.000 0.00 0.00 43.98 2.17
2055 5307 9.917129 TGAACCAAATCATTGCATTATGATATC 57.083 29.630 13.06 0.00 42.84 1.63
2062 5314 7.677454 TCATTGCATTATGATATCAGTGGAC 57.323 36.000 11.78 1.63 29.82 4.02
2102 5360 4.263771 ACCTTTGTAATCCCCTACCACTTG 60.264 45.833 0.00 0.00 0.00 3.16
2107 5365 5.343715 TGTAATCCCCTACCACTTGACTTA 58.656 41.667 0.00 0.00 0.00 2.24
2113 5371 4.514401 CCCTACCACTTGACTTATGTTCC 58.486 47.826 0.00 0.00 0.00 3.62
2122 5380 2.012673 GACTTATGTTCCAGGCTGCAG 58.987 52.381 10.11 10.11 0.00 4.41
2134 5392 2.360852 CTGCAGTTGGAGGGCCAG 60.361 66.667 6.18 0.00 46.91 4.85
2136 5394 2.116125 GCAGTTGGAGGGCCAGTT 59.884 61.111 6.18 0.00 46.91 3.16
2146 5404 1.412710 GAGGGCCAGTTGTCGATCATA 59.587 52.381 6.18 0.00 0.00 2.15
2155 5413 4.024556 CAGTTGTCGATCATAATGGGAAGC 60.025 45.833 0.00 0.00 0.00 3.86
2183 5441 1.747355 GGTGAACCTTCGTATCGAGGA 59.253 52.381 11.99 0.00 37.14 3.71
2188 5446 0.953003 CCTTCGTATCGAGGACCCTC 59.047 60.000 5.99 5.99 37.14 4.30
2200 5461 1.911766 GACCCTCGTCCCTGGTTCA 60.912 63.158 0.00 0.00 32.40 3.18
2219 5480 3.516586 TCATACCACTGAAGGACCTTCA 58.483 45.455 30.57 30.57 46.50 3.02
2272 5533 8.421784 TCAAGTGTGTTCTTCTACTTTATGAGT 58.578 33.333 0.00 0.00 42.55 3.41
2284 5604 9.665719 TTCTACTTTATGAGTTACATCATTGCA 57.334 29.630 3.48 0.00 40.40 4.08
2317 5637 5.701224 TCCTATATTTGTTTAAGCCCCCTG 58.299 41.667 0.00 0.00 0.00 4.45
2318 5638 5.194942 TCCTATATTTGTTTAAGCCCCCTGT 59.805 40.000 0.00 0.00 0.00 4.00
2320 5640 5.932619 ATATTTGTTTAAGCCCCCTGTTC 57.067 39.130 0.00 0.00 0.00 3.18
2322 5642 0.854218 TGTTTAAGCCCCCTGTTCCA 59.146 50.000 0.00 0.00 0.00 3.53
2326 5646 2.047769 TAAGCCCCCTGTTCCACTTA 57.952 50.000 0.00 0.00 0.00 2.24
2330 5650 0.323451 CCCCCTGTTCCACTTAAGCC 60.323 60.000 1.29 0.00 0.00 4.35
2331 5651 0.323451 CCCCTGTTCCACTTAAGCCC 60.323 60.000 1.29 0.00 0.00 5.19
2332 5652 0.698818 CCCTGTTCCACTTAAGCCCT 59.301 55.000 1.29 0.00 0.00 5.19
2333 5653 1.075536 CCCTGTTCCACTTAAGCCCTT 59.924 52.381 1.29 0.00 0.00 3.95
2334 5654 2.490902 CCCTGTTCCACTTAAGCCCTTT 60.491 50.000 1.29 0.00 0.00 3.11
2335 5655 3.230976 CCTGTTCCACTTAAGCCCTTTT 58.769 45.455 1.29 0.00 0.00 2.27
2336 5656 3.641436 CCTGTTCCACTTAAGCCCTTTTT 59.359 43.478 1.29 0.00 0.00 1.94
2337 5657 4.501400 CCTGTTCCACTTAAGCCCTTTTTG 60.501 45.833 1.29 0.00 0.00 2.44
2338 5658 4.282496 TGTTCCACTTAAGCCCTTTTTGA 58.718 39.130 1.29 0.00 0.00 2.69
2340 5660 3.496331 TCCACTTAAGCCCTTTTTGAGG 58.504 45.455 1.29 0.00 45.86 3.86
2353 5673 4.023792 CCTTTTTGAGGCAAGCCATTTTTC 60.024 41.667 14.40 2.07 39.09 2.29
2358 5678 3.128589 TGAGGCAAGCCATTTTTCGATAC 59.871 43.478 14.40 0.00 38.92 2.24
2361 5681 4.576463 AGGCAAGCCATTTTTCGATACTAG 59.424 41.667 14.40 0.00 38.92 2.57
2363 5683 5.266242 GCAAGCCATTTTTCGATACTAGTG 58.734 41.667 5.39 0.00 0.00 2.74
2368 5688 7.497595 AGCCATTTTTCGATACTAGTGTGATA 58.502 34.615 5.39 0.00 0.00 2.15
2375 5695 5.228665 TCGATACTAGTGTGATAGGAGTCG 58.771 45.833 5.39 0.00 31.81 4.18
2376 5696 4.989797 CGATACTAGTGTGATAGGAGTCGT 59.010 45.833 5.39 0.00 0.00 4.34
2377 5697 6.015940 TCGATACTAGTGTGATAGGAGTCGTA 60.016 42.308 5.39 0.00 32.14 3.43
2378 5698 6.644181 CGATACTAGTGTGATAGGAGTCGTAA 59.356 42.308 5.39 0.00 0.00 3.18
2379 5699 7.148771 CGATACTAGTGTGATAGGAGTCGTAAG 60.149 44.444 5.39 0.00 0.00 2.34
2432 5758 3.981071 ATGTGGTTCTTGCTACTGCTA 57.019 42.857 0.00 0.00 40.48 3.49
2440 5768 1.550524 CTTGCTACTGCTACCTGGTGA 59.449 52.381 10.23 0.00 40.48 4.02
2445 5773 3.492829 GCTACTGCTACCTGGTGAATACC 60.493 52.174 10.23 0.00 40.84 2.73
2447 5775 6.445324 GCTACTGCTACCTGGTGAATACCTA 61.445 48.000 10.23 0.00 40.96 3.08
2449 5777 8.448451 GCTACTGCTACCTGGTGAATACCTATA 61.448 44.444 10.23 0.00 40.96 1.31
2466 5794 8.747538 ATACCTATATCGCTATGTGTCATGTA 57.252 34.615 0.00 0.00 0.00 2.29
2482 5810 7.875554 TGTGTCATGTAGCTAATTTAGTTGTCA 59.124 33.333 0.00 4.49 0.00 3.58
2487 5815 7.539712 TGTAGCTAATTTAGTTGTCATGCTC 57.460 36.000 0.00 0.00 0.00 4.26
2535 5863 8.697507 ATCTAAACAAGGAAGAGTTCAAACAT 57.302 30.769 0.00 0.00 0.00 2.71
2545 5873 4.451900 AGAGTTCAAACATTTCGTCTGGT 58.548 39.130 0.00 0.00 0.00 4.00
2546 5874 4.881850 AGAGTTCAAACATTTCGTCTGGTT 59.118 37.500 0.00 0.00 0.00 3.67
2559 5887 4.487948 TCGTCTGGTTTAAAGTATGGACG 58.512 43.478 16.10 16.10 44.04 4.79
2578 5906 6.635755 TGGACGATGTAACTCATATTGTGAA 58.364 36.000 0.00 0.00 36.14 3.18
2583 5911 9.383519 ACGATGTAACTCATATTGTGAAATCTT 57.616 29.630 0.00 0.00 36.14 2.40
2584 5912 9.855361 CGATGTAACTCATATTGTGAAATCTTC 57.145 33.333 0.00 0.00 36.14 2.87
2586 5914 9.685276 ATGTAACTCATATTGTGAAATCTTCCA 57.315 29.630 0.00 0.00 36.14 3.53
2588 5916 6.668541 ACTCATATTGTGAAATCTTCCACG 57.331 37.500 0.00 0.00 36.14 4.94
2623 5983 6.060788 AGCTTGATTTTGAAGTCTGTTCTCT 58.939 36.000 0.00 0.00 0.00 3.10
2624 5984 6.017275 AGCTTGATTTTGAAGTCTGTTCTCTG 60.017 38.462 0.00 0.00 0.00 3.35
2629 5989 1.345741 TGAAGTCTGTTCTCTGGCCTG 59.654 52.381 3.32 2.92 0.00 4.85
2630 5990 1.346068 GAAGTCTGTTCTCTGGCCTGT 59.654 52.381 3.32 0.00 0.00 4.00
2634 5994 3.391296 AGTCTGTTCTCTGGCCTGTTTTA 59.609 43.478 3.32 0.00 0.00 1.52
2637 5997 3.740115 TGTTCTCTGGCCTGTTTTACTC 58.260 45.455 3.32 0.00 0.00 2.59
2638 5998 2.737252 GTTCTCTGGCCTGTTTTACTCG 59.263 50.000 3.32 0.00 0.00 4.18
2639 5999 1.275291 TCTCTGGCCTGTTTTACTCGG 59.725 52.381 3.32 0.00 0.00 4.63
2640 6000 0.321298 TCTGGCCTGTTTTACTCGGC 60.321 55.000 3.32 0.00 41.75 5.54
2641 6001 0.605319 CTGGCCTGTTTTACTCGGCA 60.605 55.000 3.32 0.00 44.23 5.69
2643 6003 1.173913 GGCCTGTTTTACTCGGCAAT 58.826 50.000 0.00 0.00 44.23 3.56
2645 6005 2.415491 GGCCTGTTTTACTCGGCAATTC 60.415 50.000 0.00 0.00 44.23 2.17
2647 6007 2.159572 CCTGTTTTACTCGGCAATTCGG 60.160 50.000 0.00 0.00 0.00 4.30
2648 6008 2.482721 CTGTTTTACTCGGCAATTCGGT 59.517 45.455 0.00 0.00 0.00 4.69
2652 6012 1.434555 TACTCGGCAATTCGGTGTTG 58.565 50.000 0.00 0.00 0.00 3.33
2654 6014 0.591170 CTCGGCAATTCGGTGTTGTT 59.409 50.000 0.00 0.00 0.00 2.83
2655 6015 0.309302 TCGGCAATTCGGTGTTGTTG 59.691 50.000 0.00 0.00 0.00 3.33
2656 6016 0.309302 CGGCAATTCGGTGTTGTTGA 59.691 50.000 0.00 0.00 0.00 3.18
2657 6017 1.662876 CGGCAATTCGGTGTTGTTGAG 60.663 52.381 0.00 0.00 0.00 3.02
2664 6024 0.583438 CGGTGTTGTTGAGCTCTGTG 59.417 55.000 16.19 0.00 0.00 3.66
2666 6026 2.017049 GGTGTTGTTGAGCTCTGTGTT 58.983 47.619 16.19 0.00 0.00 3.32
2667 6027 2.423538 GGTGTTGTTGAGCTCTGTGTTT 59.576 45.455 16.19 0.00 0.00 2.83
2668 6028 3.625764 GGTGTTGTTGAGCTCTGTGTTTA 59.374 43.478 16.19 0.00 0.00 2.01
2670 6030 5.221048 GGTGTTGTTGAGCTCTGTGTTTATT 60.221 40.000 16.19 0.00 0.00 1.40
2672 6032 7.414436 GTGTTGTTGAGCTCTGTGTTTATTTA 58.586 34.615 16.19 0.00 0.00 1.40
2722 6150 8.822855 CAAATATACCGTGTTCTATTTGCAGTA 58.177 33.333 12.87 0.00 35.79 2.74
2727 6155 6.403878 ACCGTGTTCTATTTGCAGTACTAAT 58.596 36.000 0.00 0.00 0.00 1.73
2730 6158 7.490079 CCGTGTTCTATTTGCAGTACTAATACA 59.510 37.037 0.00 0.00 33.30 2.29
2741 6169 6.014070 TGCAGTACTAATACAAAGGACTTCCA 60.014 38.462 0.00 0.00 35.90 3.53
2759 6187 3.055328 TCCATGGATATTCCTTGCCTGA 58.945 45.455 11.44 0.00 39.57 3.86
2789 6217 2.355010 AGCATAATCCCTTCAGGTGC 57.645 50.000 0.00 0.00 36.75 5.01
2797 6225 1.202879 TCCCTTCAGGTGCGAATGTTT 60.203 47.619 0.00 0.00 36.75 2.83
2798 6226 1.613437 CCCTTCAGGTGCGAATGTTTT 59.387 47.619 0.00 0.00 0.00 2.43
2834 6543 7.653713 GTGTCCAGAATATTGTCGATGTTATCT 59.346 37.037 0.00 0.00 0.00 1.98
2888 6598 5.514484 CCTTATTCCATCAGGATTCTGGAGG 60.514 48.000 0.00 3.74 45.26 4.30
2924 6634 2.039084 AGAATCCGTTGGCTATCCCATC 59.961 50.000 0.00 0.00 44.89 3.51
2927 6637 1.301716 CGTTGGCTATCCCATCCCG 60.302 63.158 0.00 0.00 44.89 5.14
2952 6662 4.275689 CACCACTTGTGCTTGAATGTAAGA 59.724 41.667 0.00 0.00 38.34 2.10
2972 6682 1.001378 ACGTTGCTTTCCATGTTGCTC 60.001 47.619 0.00 0.00 0.00 4.26
2991 6701 1.070758 TCACCTCTCCTTTGTGCACTC 59.929 52.381 19.41 0.00 0.00 3.51
2996 6706 4.141482 ACCTCTCCTTTGTGCACTCTTTTA 60.141 41.667 19.41 0.00 0.00 1.52
2997 6707 4.453819 CCTCTCCTTTGTGCACTCTTTTAG 59.546 45.833 19.41 8.64 0.00 1.85
2998 6708 3.815401 TCTCCTTTGTGCACTCTTTTAGC 59.185 43.478 19.41 0.00 0.00 3.09
2999 6709 3.817647 CTCCTTTGTGCACTCTTTTAGCT 59.182 43.478 19.41 0.00 0.00 3.32
3000 6710 4.968259 TCCTTTGTGCACTCTTTTAGCTA 58.032 39.130 19.41 0.00 0.00 3.32
3002 6712 6.003950 TCCTTTGTGCACTCTTTTAGCTAAT 58.996 36.000 19.41 0.00 0.00 1.73
3012 6722 8.171840 GCACTCTTTTAGCTAATTTCTGTACTG 58.828 37.037 7.08 0.00 0.00 2.74
3061 6771 2.499289 ACTGCTCGAGACATTTGAGGAT 59.501 45.455 18.75 0.00 37.08 3.24
3064 6774 3.055891 TGCTCGAGACATTTGAGGATGAA 60.056 43.478 18.75 0.00 37.72 2.57
3076 6786 7.604927 ACATTTGAGGATGAATTTGGTGAATTG 59.395 33.333 0.00 0.00 38.06 2.32
3078 6788 4.107622 GAGGATGAATTTGGTGAATTGCG 58.892 43.478 0.00 0.00 38.06 4.85
3090 6800 1.885233 TGAATTGCGTGCATGGAAAGA 59.115 42.857 17.22 1.23 0.00 2.52
3103 6813 4.103311 GCATGGAAAGAGTATCCTTACCCT 59.897 45.833 0.00 0.00 37.85 4.34
3124 6834 4.204012 CTGTTTCAAACCCTGGTTCTACA 58.796 43.478 1.29 4.21 37.35 2.74
3128 6838 2.038557 TCAAACCCTGGTTCTACAGAGC 59.961 50.000 1.29 0.00 40.97 4.09
3139 6849 1.350684 TCTACAGAGCATGTTTGGGCA 59.649 47.619 0.00 0.00 39.96 5.36
3150 6860 3.019799 TGTTTGGGCACTACTTCCAAA 57.980 42.857 0.00 0.00 45.08 3.28
3186 6896 6.655003 ACAAACATATCCCTAAGTGTTGTCAG 59.345 38.462 0.00 0.00 35.20 3.51
3200 6910 3.248363 TGTTGTCAGACTTGCTTCATTCG 59.752 43.478 1.31 0.00 0.00 3.34
3210 6920 4.142534 ACTTGCTTCATTCGATGGTGATTG 60.143 41.667 0.00 0.00 0.00 2.67
3213 6923 4.218200 TGCTTCATTCGATGGTGATTGTTT 59.782 37.500 0.00 0.00 0.00 2.83
3224 6935 9.607988 TCGATGGTGATTGTTTTAGTTATATGT 57.392 29.630 0.00 0.00 0.00 2.29
3254 6971 4.860802 TCCCTTAGCATTTGATCTCCAA 57.139 40.909 0.00 0.00 0.00 3.53
3256 6973 5.769835 TCCCTTAGCATTTGATCTCCAATT 58.230 37.500 0.00 0.00 34.23 2.32
3296 7013 3.685139 ATGTGTAGGAAGTGTGAGGTG 57.315 47.619 0.00 0.00 0.00 4.00
3385 7102 2.158726 TCGGCCAGTTTGGTTAGAAGTT 60.159 45.455 2.24 0.00 40.46 2.66
3389 7106 3.243401 GCCAGTTTGGTTAGAAGTTGTGG 60.243 47.826 0.00 0.00 40.46 4.17
3411 7128 7.665145 TGTGGTGATCACTTCAAGATTGATAAA 59.335 33.333 24.50 0.00 46.20 1.40
3428 7145 9.419297 GATTGATAAAAACTTAAGGGTTTGTCC 57.581 33.333 18.60 7.52 39.08 4.02
3431 7148 9.643735 TGATAAAAACTTAAGGGTTTGTCCTTA 57.356 29.630 18.60 0.00 44.66 2.69
3432 7149 9.903682 GATAAAAACTTAAGGGTTTGTCCTTAC 57.096 33.333 7.53 0.00 45.87 2.34
3434 7151 6.954487 AAACTTAAGGGTTTGTCCTTACTG 57.046 37.500 7.53 3.13 45.87 2.74
3435 7152 5.641789 ACTTAAGGGTTTGTCCTTACTGT 57.358 39.130 7.53 3.65 45.87 3.55
3436 7153 6.009908 ACTTAAGGGTTTGTCCTTACTGTT 57.990 37.500 7.53 0.00 45.87 3.16
3437 7154 6.429151 ACTTAAGGGTTTGTCCTTACTGTTT 58.571 36.000 7.53 0.00 45.87 2.83
3438 7155 6.893554 ACTTAAGGGTTTGTCCTTACTGTTTT 59.106 34.615 7.53 0.00 45.87 2.43
3513 7241 0.531090 TTGACGTGTTTCTCCCACCG 60.531 55.000 0.00 0.00 0.00 4.94
3516 7244 1.374252 CGTGTTTCTCCCACCGAGG 60.374 63.158 0.00 0.00 39.30 4.63
3576 7304 6.845758 AATACCAATATTGCCATCATCAGG 57.154 37.500 10.11 0.00 29.38 3.86
3602 7330 0.179048 CAGGCTATCCGTGGCATTCA 60.179 55.000 0.00 0.00 37.47 2.57
3619 7347 5.221382 GGCATTCATCCAGTTGATATTTGCT 60.221 40.000 0.00 0.00 33.96 3.91
3620 7348 5.919141 GCATTCATCCAGTTGATATTTGCTC 59.081 40.000 0.00 0.00 32.24 4.26
3642 7370 7.872993 TGCTCTGAAGAGGATTTATATAAACCG 59.127 37.037 10.07 2.02 42.29 4.44
3648 7376 9.993454 GAAGAGGATTTATATAAACCGGTAGTT 57.007 33.333 8.00 1.02 41.81 2.24
3652 7380 7.660208 AGGATTTATATAAACCGGTAGTTGCTG 59.340 37.037 8.00 0.00 39.19 4.41
3715 7443 2.423538 GGCAAAGTGTGTCTTGACAAGT 59.576 45.455 14.75 0.00 36.40 3.16
3717 7445 3.785505 GCAAAGTGTGTCTTGACAAGTCG 60.786 47.826 14.75 0.00 36.40 4.18
3718 7446 3.520290 AAGTGTGTCTTGACAAGTCGA 57.480 42.857 14.75 0.00 34.77 4.20
3720 7448 1.523095 GTGTGTCTTGACAAGTCGAGC 59.477 52.381 14.75 8.24 40.21 5.03
3721 7449 1.140816 GTGTCTTGACAAGTCGAGCC 58.859 55.000 14.75 2.41 40.21 4.70
3722 7450 1.040646 TGTCTTGACAAGTCGAGCCT 58.959 50.000 14.75 0.00 40.21 4.58
3723 7451 1.269778 TGTCTTGACAAGTCGAGCCTG 60.270 52.381 14.75 0.00 40.21 4.85
3730 7458 3.265791 GACAAGTCGAGCCTGATTGATT 58.734 45.455 0.00 0.00 0.00 2.57
3731 7459 3.265791 ACAAGTCGAGCCTGATTGATTC 58.734 45.455 0.00 0.00 0.00 2.52
3734 7462 2.437281 AGTCGAGCCTGATTGATTCCAT 59.563 45.455 0.00 0.00 0.00 3.41
3735 7463 2.547211 GTCGAGCCTGATTGATTCCATG 59.453 50.000 0.00 0.00 0.00 3.66
3736 7464 2.171237 TCGAGCCTGATTGATTCCATGT 59.829 45.455 0.00 0.00 0.00 3.21
3737 7465 2.947652 CGAGCCTGATTGATTCCATGTT 59.052 45.455 0.00 0.00 0.00 2.71
3738 7466 3.379372 CGAGCCTGATTGATTCCATGTTT 59.621 43.478 0.00 0.00 0.00 2.83
3740 7468 3.703052 AGCCTGATTGATTCCATGTTTCC 59.297 43.478 0.00 0.00 0.00 3.13
3741 7469 3.448301 GCCTGATTGATTCCATGTTTCCA 59.552 43.478 0.00 0.00 0.00 3.53
3742 7470 4.441079 GCCTGATTGATTCCATGTTTCCAG 60.441 45.833 0.00 0.00 0.00 3.86
3747 7478 3.420893 TGATTCCATGTTTCCAGTGTCC 58.579 45.455 0.00 0.00 0.00 4.02
3761 7492 5.063204 TCCAGTGTCCACTTGTAAAATCAG 58.937 41.667 0.00 0.00 40.20 2.90
3762 7493 4.821805 CCAGTGTCCACTTGTAAAATCAGT 59.178 41.667 0.00 0.00 40.20 3.41
3769 7500 8.380099 TGTCCACTTGTAAAATCAGTAAGGTAT 58.620 33.333 0.00 0.00 0.00 2.73
3770 7501 9.227777 GTCCACTTGTAAAATCAGTAAGGTATT 57.772 33.333 0.00 0.00 0.00 1.89
3771 7502 9.226606 TCCACTTGTAAAATCAGTAAGGTATTG 57.773 33.333 0.00 0.00 0.00 1.90
3784 7515 9.817809 TCAGTAAGGTATTGTGACAAATATCTC 57.182 33.333 0.62 0.00 33.28 2.75
3785 7516 9.823647 CAGTAAGGTATTGTGACAAATATCTCT 57.176 33.333 0.62 0.00 33.28 3.10
3788 7519 8.511604 AAGGTATTGTGACAAATATCTCTTGG 57.488 34.615 0.62 0.00 33.28 3.61
3789 7520 7.056635 AGGTATTGTGACAAATATCTCTTGGG 58.943 38.462 0.62 0.00 29.19 4.12
3790 7521 6.828785 GGTATTGTGACAAATATCTCTTGGGT 59.171 38.462 0.62 0.00 0.00 4.51
3791 7522 7.012421 GGTATTGTGACAAATATCTCTTGGGTC 59.988 40.741 0.62 0.00 0.00 4.46
3792 7523 4.503910 TGTGACAAATATCTCTTGGGTCG 58.496 43.478 0.00 0.00 0.00 4.79
3793 7524 4.020573 TGTGACAAATATCTCTTGGGTCGT 60.021 41.667 0.00 0.00 0.00 4.34
3799 7531 7.110155 ACAAATATCTCTTGGGTCGTTTACAT 58.890 34.615 0.00 0.00 0.00 2.29
3805 7537 5.359009 TCTCTTGGGTCGTTTACATAGTAGG 59.641 44.000 0.00 0.00 0.00 3.18
3810 7542 4.339247 GGGTCGTTTACATAGTAGGTGCTA 59.661 45.833 0.00 0.00 0.00 3.49
3812 7544 6.207417 GGGTCGTTTACATAGTAGGTGCTATA 59.793 42.308 0.00 0.00 31.10 1.31
3813 7545 7.255590 GGGTCGTTTACATAGTAGGTGCTATAA 60.256 40.741 0.00 0.00 31.10 0.98
3851 7583 8.768955 AGAATACATTTGAGCTCATTAATCGAC 58.231 33.333 19.04 7.19 0.00 4.20
3852 7584 5.741388 ACATTTGAGCTCATTAATCGACC 57.259 39.130 19.04 0.00 0.00 4.79
3853 7585 5.431765 ACATTTGAGCTCATTAATCGACCT 58.568 37.500 19.04 0.00 0.00 3.85
3855 7587 7.220030 ACATTTGAGCTCATTAATCGACCTAT 58.780 34.615 19.04 0.00 0.00 2.57
3856 7588 8.367911 ACATTTGAGCTCATTAATCGACCTATA 58.632 33.333 19.04 0.00 0.00 1.31
3858 7590 6.894339 TGAGCTCATTAATCGACCTATACA 57.106 37.500 13.74 0.00 0.00 2.29
3859 7591 7.468141 TGAGCTCATTAATCGACCTATACAT 57.532 36.000 13.74 0.00 0.00 2.29
3860 7592 8.575649 TGAGCTCATTAATCGACCTATACATA 57.424 34.615 13.74 0.00 0.00 2.29
3899 7631 2.050477 GCAAACTGCTTTATGTGCGT 57.950 45.000 0.00 0.00 40.96 5.24
3901 7633 2.604373 GCAAACTGCTTTATGTGCGTCA 60.604 45.455 0.00 0.00 40.96 4.35
3902 7634 3.825308 CAAACTGCTTTATGTGCGTCAT 58.175 40.909 0.25 0.25 40.25 3.06
3921 7653 6.348213 GCGTCATTACAACTTGTCCATTAACT 60.348 38.462 0.00 0.00 0.00 2.24
3922 7654 7.015289 CGTCATTACAACTTGTCCATTAACTG 58.985 38.462 0.00 0.00 0.00 3.16
3923 7655 7.095397 CGTCATTACAACTTGTCCATTAACTGA 60.095 37.037 0.00 0.00 0.00 3.41
3926 7658 7.724305 TTACAACTTGTCCATTAACTGAGAC 57.276 36.000 0.00 0.00 0.00 3.36
3927 7659 4.750098 ACAACTTGTCCATTAACTGAGACG 59.250 41.667 0.00 0.00 31.45 4.18
3930 7662 4.202223 ACTTGTCCATTAACTGAGACGTGT 60.202 41.667 0.00 0.00 31.45 4.49
3933 7665 5.647589 TGTCCATTAACTGAGACGTGTATC 58.352 41.667 0.00 0.00 31.45 2.24
3938 7670 7.544566 TCCATTAACTGAGACGTGTATCTTTTC 59.455 37.037 0.00 0.00 0.00 2.29
3940 7672 7.869016 TTAACTGAGACGTGTATCTTTTCTG 57.131 36.000 0.00 0.00 0.00 3.02
3942 7674 6.570672 ACTGAGACGTGTATCTTTTCTGTA 57.429 37.500 0.00 0.00 0.00 2.74
3943 7675 7.159322 ACTGAGACGTGTATCTTTTCTGTAT 57.841 36.000 0.00 0.00 0.00 2.29
3944 7676 7.603651 ACTGAGACGTGTATCTTTTCTGTATT 58.396 34.615 0.00 0.00 0.00 1.89
3945 7677 7.542477 ACTGAGACGTGTATCTTTTCTGTATTG 59.458 37.037 0.00 0.00 0.00 1.90
3949 7683 4.260212 CGTGTATCTTTTCTGTATTGGGCG 60.260 45.833 0.00 0.00 0.00 6.13
3952 7686 1.102978 CTTTTCTGTATTGGGCGGGG 58.897 55.000 0.00 0.00 0.00 5.73
3973 7707 3.077543 GGATTGGAGGCCCCCTTATTAAT 59.922 47.826 4.32 0.00 31.76 1.40
3983 7717 4.904853 GCCCCCTTATTAATTTTGATGGGA 59.095 41.667 8.01 0.00 35.64 4.37
3994 7728 5.628797 ATTTTGATGGGACTTTTGTTGGT 57.371 34.783 0.00 0.00 0.00 3.67
4015 7749 4.757149 GGTATGAACCACTATGATGGAAGC 59.243 45.833 4.17 0.00 45.98 3.86
4024 7758 4.872691 CACTATGATGGAAGCGAAGAAACT 59.127 41.667 0.00 0.00 0.00 2.66
4025 7759 6.042777 CACTATGATGGAAGCGAAGAAACTA 58.957 40.000 0.00 0.00 0.00 2.24
4031 7765 4.062991 TGGAAGCGAAGAAACTACTTTCC 58.937 43.478 0.00 0.00 37.12 3.13
4033 7767 4.755629 GGAAGCGAAGAAACTACTTTCCTT 59.244 41.667 0.00 0.00 37.12 3.36
4041 7775 4.104897 AGAAACTACTTTCCTTCCAAGGCT 59.895 41.667 0.00 0.00 46.06 4.58
4052 7786 4.766891 TCCTTCCAAGGCTTAAGATTGTTG 59.233 41.667 6.67 3.43 46.06 3.33
4058 7792 7.734942 TCCAAGGCTTAAGATTGTTGAAATTT 58.265 30.769 6.67 0.00 0.00 1.82
4070 7804 9.987272 AGATTGTTGAAATTTTAAAAGGAGAGG 57.013 29.630 6.79 0.00 0.00 3.69
4083 7817 4.553330 AAGGAGAGGTTAATCAGCGAAA 57.447 40.909 0.00 0.00 0.00 3.46
4110 7845 9.533253 AAAAGGTGATTTTTCTATGACTTGTTG 57.467 29.630 0.00 0.00 37.89 3.33
4113 7848 7.665559 AGGTGATTTTTCTATGACTTGTTGCTA 59.334 33.333 0.00 0.00 0.00 3.49
4120 7855 9.515226 TTTTCTATGACTTGTTGCTATTTAGGT 57.485 29.630 0.00 0.00 0.00 3.08
4123 7858 8.421784 TCTATGACTTGTTGCTATTTAGGTAGG 58.578 37.037 0.00 0.00 0.00 3.18
4374 8126 1.528824 CCCCTGTGGTCATAGGCTG 59.471 63.158 8.07 0.00 38.26 4.85
4430 8189 6.952605 TCCTAATTCCCATCTAATTCCGAT 57.047 37.500 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 1.026718 GGACAACATCCTTGGAGGCG 61.027 60.000 0.83 0.00 45.22 5.52
251 252 6.303839 TCACAGATTTTTAGGGTGCTAGTTT 58.696 36.000 0.00 0.00 0.00 2.66
416 417 9.061610 CGTTATTTTTCTGTTATTGGTGATGAC 57.938 33.333 0.00 0.00 0.00 3.06
501 502 3.236896 GGTATTCCCGGATCTCCAAGTA 58.763 50.000 0.73 0.00 35.14 2.24
1021 1022 2.273449 GCCATCACTCCCACTGGG 59.727 66.667 7.97 7.97 46.11 4.45
1023 1024 0.325933 TTCTGCCATCACTCCCACTG 59.674 55.000 0.00 0.00 0.00 3.66
1049 1050 3.875134 CTCCTTTGTGTACGAACAAACCT 59.125 43.478 7.27 0.00 43.34 3.50
1052 1053 6.339730 TCTAACTCCTTTGTGTACGAACAAA 58.660 36.000 10.17 10.17 45.38 2.83
1054 1055 5.300034 TCTCTAACTCCTTTGTGTACGAACA 59.700 40.000 0.00 0.00 0.00 3.18
1057 1058 5.766670 TCTTCTCTAACTCCTTTGTGTACGA 59.233 40.000 0.00 0.00 0.00 3.43
1058 1059 6.010294 TCTTCTCTAACTCCTTTGTGTACG 57.990 41.667 0.00 0.00 0.00 3.67
1063 1064 7.554959 TTACCATCTTCTCTAACTCCTTTGT 57.445 36.000 0.00 0.00 0.00 2.83
1064 1068 8.848474 TTTTACCATCTTCTCTAACTCCTTTG 57.152 34.615 0.00 0.00 0.00 2.77
1065 1069 9.454859 CATTTTACCATCTTCTCTAACTCCTTT 57.545 33.333 0.00 0.00 0.00 3.11
1068 1072 8.041323 TCACATTTTACCATCTTCTCTAACTCC 58.959 37.037 0.00 0.00 0.00 3.85
1071 1075 8.779354 ACTCACATTTTACCATCTTCTCTAAC 57.221 34.615 0.00 0.00 0.00 2.34
1072 1076 8.593679 TGACTCACATTTTACCATCTTCTCTAA 58.406 33.333 0.00 0.00 0.00 2.10
1077 1081 6.650807 TCAGTGACTCACATTTTACCATCTTC 59.349 38.462 11.80 0.00 36.74 2.87
1112 1116 5.779771 ACATGCAGGAAAAGGGAAGAATAAA 59.220 36.000 4.84 0.00 0.00 1.40
1130 1139 8.886719 GCATTCTATTTGAGCTATATACATGCA 58.113 33.333 0.00 0.00 0.00 3.96
1136 1145 9.866798 CTGTGAGCATTCTATTTGAGCTATATA 57.133 33.333 0.00 0.00 35.36 0.86
1153 1165 2.549064 TACACTGCAACTGTGAGCAT 57.451 45.000 11.19 0.00 40.42 3.79
1228 1241 1.818674 GAAAAGTCGGGCATCCACAAT 59.181 47.619 0.00 0.00 0.00 2.71
1229 1242 1.243902 GAAAAGTCGGGCATCCACAA 58.756 50.000 0.00 0.00 0.00 3.33
1232 1245 0.960364 GCTGAAAAGTCGGGCATCCA 60.960 55.000 0.00 0.00 0.00 3.41
1239 1252 2.349886 GTGCTCTATGCTGAAAAGTCGG 59.650 50.000 0.00 0.00 43.37 4.79
1250 1263 0.183492 TTGATGGGGGTGCTCTATGC 59.817 55.000 0.00 0.00 43.25 3.14
1252 1265 1.898863 ACTTGATGGGGGTGCTCTAT 58.101 50.000 0.00 0.00 0.00 1.98
1290 1303 7.403312 TGAATCACCAAACTCTTTTTCTTCA 57.597 32.000 0.00 0.00 0.00 3.02
1291 1304 6.920210 CCTGAATCACCAAACTCTTTTTCTTC 59.080 38.462 0.00 0.00 0.00 2.87
1296 1309 4.218312 AGCCTGAATCACCAAACTCTTTT 58.782 39.130 0.00 0.00 0.00 2.27
1322 1335 5.806502 CCGATTGCTTGAAATGCTTTATCAA 59.193 36.000 0.00 8.53 37.94 2.57
1333 1346 0.881118 GTGCTCCCGATTGCTTGAAA 59.119 50.000 0.00 0.00 0.00 2.69
1348 1361 0.543749 GGAGCTATGTCCTTGGTGCT 59.456 55.000 0.00 0.00 33.30 4.40
1349 1362 0.253044 TGGAGCTATGTCCTTGGTGC 59.747 55.000 0.00 0.00 37.52 5.01
1363 1376 4.265073 ACAATGGTAGACAAATCTGGAGC 58.735 43.478 0.00 0.00 36.29 4.70
1378 1391 1.701847 AGCCAGAGAGACAACAATGGT 59.298 47.619 0.00 0.00 0.00 3.55
1395 1408 4.525912 AGAATCACCATCAAACAAAGCC 57.474 40.909 0.00 0.00 0.00 4.35
1435 1453 5.801947 GCAATGAGTACATGAAAATGTGGAC 59.198 40.000 0.00 0.00 36.79 4.02
1445 1463 4.074259 ACAAAGCAGCAATGAGTACATGA 58.926 39.130 0.00 0.00 36.79 3.07
1446 1464 4.430137 ACAAAGCAGCAATGAGTACATG 57.570 40.909 4.58 0.00 36.79 3.21
1460 1478 6.094742 TGAGTCAAATCACTAACAACAAAGCA 59.905 34.615 0.00 0.00 0.00 3.91
1461 1479 6.414987 GTGAGTCAAATCACTAACAACAAAGC 59.585 38.462 0.00 0.00 45.03 3.51
1462 1480 6.628856 CGTGAGTCAAATCACTAACAACAAAG 59.371 38.462 8.71 0.00 46.04 2.77
1463 1481 6.314152 TCGTGAGTCAAATCACTAACAACAAA 59.686 34.615 8.71 0.00 46.04 2.83
1464 1482 5.813157 TCGTGAGTCAAATCACTAACAACAA 59.187 36.000 8.71 0.00 46.04 2.83
1465 1483 5.353111 TCGTGAGTCAAATCACTAACAACA 58.647 37.500 8.71 0.00 46.04 3.33
1466 1484 5.900339 TCGTGAGTCAAATCACTAACAAC 57.100 39.130 8.71 0.00 46.04 3.32
1476 1498 3.865446 TGCATGAGATCGTGAGTCAAAT 58.135 40.909 6.23 0.00 34.90 2.32
1493 1515 6.774170 TGCAAATAACATTCTATCCTCTGCAT 59.226 34.615 0.00 0.00 30.52 3.96
1499 1521 6.774170 TGAGCATGCAAATAACATTCTATCCT 59.226 34.615 21.98 0.00 0.00 3.24
1500 1522 6.973843 TGAGCATGCAAATAACATTCTATCC 58.026 36.000 21.98 0.00 0.00 2.59
1506 1528 3.735820 CGCCTGAGCATGCAAATAACATT 60.736 43.478 21.98 0.00 39.83 2.71
1534 1556 1.003233 GGAAGTTGTCCCAGGTGGTAG 59.997 57.143 0.00 0.00 41.10 3.18
1552 1574 5.483937 TCACAAATCTTGTTAGCTCTAGGGA 59.516 40.000 0.00 0.00 43.23 4.20
1553 1575 5.582665 GTCACAAATCTTGTTAGCTCTAGGG 59.417 44.000 0.00 0.00 43.23 3.53
1554 1576 6.402222 AGTCACAAATCTTGTTAGCTCTAGG 58.598 40.000 0.00 0.00 43.23 3.02
1618 1640 6.332630 CACCAACCCTCAATTTATCATCAAC 58.667 40.000 0.00 0.00 0.00 3.18
1657 1679 9.841295 AGCAAAGCAAAATGGAATTATAATGAT 57.159 25.926 0.00 0.00 33.67 2.45
1658 1680 9.669887 AAGCAAAGCAAAATGGAATTATAATGA 57.330 25.926 0.00 0.00 33.67 2.57
1663 1685 9.669887 TCAATAAGCAAAGCAAAATGGAATTAT 57.330 25.926 0.00 0.00 33.67 1.28
1664 1686 9.499479 TTCAATAAGCAAAGCAAAATGGAATTA 57.501 25.926 0.00 0.00 33.67 1.40
1665 1687 7.982761 TCAATAAGCAAAGCAAAATGGAATT 57.017 28.000 0.00 0.00 38.98 2.17
1666 1688 7.982761 TTCAATAAGCAAAGCAAAATGGAAT 57.017 28.000 0.00 0.00 0.00 3.01
1713 1751 9.896645 TCAATCTGCAGAGATAAAAAGAAGTAT 57.103 29.630 22.96 0.00 38.03 2.12
1714 1752 9.376075 CTCAATCTGCAGAGATAAAAAGAAGTA 57.624 33.333 22.96 0.00 38.03 2.24
1716 1754 7.336427 ACCTCAATCTGCAGAGATAAAAAGAAG 59.664 37.037 22.96 6.98 38.03 2.85
1717 1755 7.120285 CACCTCAATCTGCAGAGATAAAAAGAA 59.880 37.037 22.96 0.00 38.03 2.52
1719 1757 6.373774 ACACCTCAATCTGCAGAGATAAAAAG 59.626 38.462 22.96 11.34 38.03 2.27
1720 1758 6.149973 CACACCTCAATCTGCAGAGATAAAAA 59.850 38.462 22.96 0.00 38.03 1.94
1728 1769 0.321919 GGCACACCTCAATCTGCAGA 60.322 55.000 20.79 20.79 0.00 4.26
1740 1781 2.084546 GTACAATCTGGAAGGCACACC 58.915 52.381 0.00 0.00 0.00 4.16
1756 1797 4.811969 AGAACCCATCGTTATGTGTACA 57.188 40.909 0.00 0.00 33.74 2.90
1757 1798 4.331717 CCAAGAACCCATCGTTATGTGTAC 59.668 45.833 0.00 0.00 33.74 2.90
1766 1807 1.946984 TAGTCCCAAGAACCCATCGT 58.053 50.000 0.00 0.00 0.00 3.73
1767 1808 4.283467 TCATATAGTCCCAAGAACCCATCG 59.717 45.833 0.00 0.00 0.00 3.84
1795 1836 6.112734 TGAAGGACGTGACAATAGCAATATT 58.887 36.000 0.00 0.00 0.00 1.28
1817 1858 1.038681 AGCATGCGGGCATTCATTGA 61.039 50.000 13.01 0.00 33.90 2.57
1819 1860 1.324740 ACAGCATGCGGGCATTCATT 61.325 50.000 21.96 0.00 42.53 2.57
1824 1865 2.827190 CAGACAGCATGCGGGCAT 60.827 61.111 25.96 8.09 42.53 4.40
1825 1866 4.334118 ACAGACAGCATGCGGGCA 62.334 61.111 25.96 0.00 42.53 5.36
1826 1867 3.503363 GACAGACAGCATGCGGGC 61.503 66.667 21.96 19.57 42.53 6.13
1831 1884 3.384146 AGATCTACAGGACAGACAGCATG 59.616 47.826 0.00 0.00 46.00 4.06
1835 1888 4.819630 GGTCTAGATCTACAGGACAGACAG 59.180 50.000 17.23 0.00 34.74 3.51
1854 1907 2.363147 GGAGGTGCCTCGAGGTCT 60.363 66.667 31.43 24.51 43.59 3.85
1871 1924 7.812191 CAGCTACTATTGCCTTAGTATCAAGAG 59.188 40.741 4.01 0.00 34.89 2.85
1872 1925 7.661968 CAGCTACTATTGCCTTAGTATCAAGA 58.338 38.462 4.01 0.00 34.89 3.02
1874 1927 6.042093 AGCAGCTACTATTGCCTTAGTATCAA 59.958 38.462 0.00 0.00 41.17 2.57
1879 1935 3.243569 CGAGCAGCTACTATTGCCTTAGT 60.244 47.826 0.00 1.80 41.17 2.24
1880 1936 3.243569 ACGAGCAGCTACTATTGCCTTAG 60.244 47.826 0.00 0.00 41.17 2.18
1886 1942 2.215907 AGCACGAGCAGCTACTATTG 57.784 50.000 7.77 0.00 45.49 1.90
1892 1948 1.877637 TTTGAAAGCACGAGCAGCTA 58.122 45.000 7.77 0.00 42.53 3.32
1905 1961 1.319541 TCAAACGGCCCGATTTGAAA 58.680 45.000 22.62 8.90 40.85 2.69
1909 1965 1.676006 GATCATCAAACGGCCCGATTT 59.324 47.619 11.71 3.79 0.00 2.17
1910 1966 1.308998 GATCATCAAACGGCCCGATT 58.691 50.000 11.71 0.00 0.00 3.34
1956 2012 1.723608 TTTGCTTCCAGTGTGCACGG 61.724 55.000 13.13 7.68 36.37 4.94
1963 2019 3.008330 CCTCTGAGATTTGCTTCCAGTG 58.992 50.000 6.17 0.00 0.00 3.66
1964 2020 2.641815 ACCTCTGAGATTTGCTTCCAGT 59.358 45.455 6.17 0.00 0.00 4.00
1971 2027 3.931578 ACAGTGTACCTCTGAGATTTGC 58.068 45.455 17.93 0.00 36.81 3.68
1978 2034 3.324846 AGCAATCAACAGTGTACCTCTGA 59.675 43.478 17.93 0.00 36.81 3.27
2011 2069 3.063510 TCAAGTCTTCCATCTTGCCAG 57.936 47.619 0.00 0.00 40.27 4.85
2017 2075 5.634118 TGATTTGGTTCAAGTCTTCCATCT 58.366 37.500 5.11 0.00 32.52 2.90
2033 2091 9.353999 CACTGATATCATAATGCAATGATTTGG 57.646 33.333 16.91 9.24 42.63 3.28
2039 5291 7.683437 AGTCCACTGATATCATAATGCAATG 57.317 36.000 5.72 0.00 0.00 2.82
2069 5322 4.580580 GGGATTACAAAGGTAAGATGGCAG 59.419 45.833 0.00 0.00 42.42 4.85
2076 5329 5.191124 AGTGGTAGGGGATTACAAAGGTAAG 59.809 44.000 0.00 0.00 42.42 2.34
2102 5360 2.012673 CTGCAGCCTGGAACATAAGTC 58.987 52.381 0.00 0.00 38.20 3.01
2107 5365 0.896940 CCAACTGCAGCCTGGAACAT 60.897 55.000 24.77 0.00 38.20 2.71
2113 5371 2.360852 CCCTCCAACTGCAGCCTG 60.361 66.667 15.27 11.59 0.00 4.85
2122 5380 1.966451 CGACAACTGGCCCTCCAAC 60.966 63.158 0.00 0.00 42.91 3.77
2134 5392 4.130118 AGCTTCCCATTATGATCGACAAC 58.870 43.478 0.00 0.00 0.00 3.32
2136 5394 4.101585 AGAAGCTTCCCATTATGATCGACA 59.898 41.667 22.81 0.00 0.00 4.35
2146 5404 0.786435 ACCCCAAGAAGCTTCCCATT 59.214 50.000 22.81 8.21 0.00 3.16
2155 5413 1.202770 ACGAAGGTTCACCCCAAGAAG 60.203 52.381 0.00 0.00 36.42 2.85
2183 5441 0.042131 TATGAACCAGGGACGAGGGT 59.958 55.000 0.00 0.00 36.19 4.34
2210 5471 2.606587 AAGCGCCCATGAAGGTCCT 61.607 57.895 2.29 0.00 34.66 3.85
2213 5474 0.962356 CTTCAAGCGCCCATGAAGGT 60.962 55.000 27.55 0.00 45.56 3.50
2219 5480 0.609662 AAAATGCTTCAAGCGCCCAT 59.390 45.000 2.29 0.00 46.26 4.00
2222 5483 1.068333 TCTGAAAATGCTTCAAGCGCC 60.068 47.619 2.29 0.00 46.26 6.53
2223 5484 2.336554 TCTGAAAATGCTTCAAGCGC 57.663 45.000 4.57 0.00 46.26 5.92
2272 5533 8.674263 AGGAAACAAAATTTGCAATGATGTAA 57.326 26.923 5.52 0.00 0.00 2.41
2308 5628 1.075536 CTTAAGTGGAACAGGGGGCTT 59.924 52.381 0.00 0.00 41.80 4.35
2310 5630 0.965866 GCTTAAGTGGAACAGGGGGC 60.966 60.000 4.02 0.00 41.80 5.80
2317 5637 4.262036 CCTCAAAAAGGGCTTAAGTGGAAC 60.262 45.833 4.02 0.00 42.03 3.62
2318 5638 3.895041 CCTCAAAAAGGGCTTAAGTGGAA 59.105 43.478 4.02 0.00 42.03 3.53
2320 5640 2.029020 GCCTCAAAAAGGGCTTAAGTGG 60.029 50.000 4.02 0.00 46.32 4.00
2322 5642 2.957474 TGCCTCAAAAAGGGCTTAAGT 58.043 42.857 4.02 0.00 46.32 2.24
2326 5646 0.394192 GCTTGCCTCAAAAAGGGCTT 59.606 50.000 5.57 0.00 46.32 4.35
2331 5651 4.318974 CGAAAAATGGCTTGCCTCAAAAAG 60.319 41.667 13.18 0.00 0.00 2.27
2332 5652 3.559242 CGAAAAATGGCTTGCCTCAAAAA 59.441 39.130 13.18 0.00 0.00 1.94
2333 5653 3.129871 CGAAAAATGGCTTGCCTCAAAA 58.870 40.909 13.18 0.00 0.00 2.44
2334 5654 2.363680 TCGAAAAATGGCTTGCCTCAAA 59.636 40.909 13.18 0.00 0.00 2.69
2335 5655 1.959985 TCGAAAAATGGCTTGCCTCAA 59.040 42.857 13.18 0.00 0.00 3.02
2336 5656 1.614996 TCGAAAAATGGCTTGCCTCA 58.385 45.000 13.18 0.00 0.00 3.86
2337 5657 2.947448 ATCGAAAAATGGCTTGCCTC 57.053 45.000 13.18 0.76 0.00 4.70
2338 5658 3.356290 AGTATCGAAAAATGGCTTGCCT 58.644 40.909 13.18 0.00 0.00 4.75
2340 5660 5.163754 ACACTAGTATCGAAAAATGGCTTGC 60.164 40.000 0.00 0.00 0.00 4.01
2341 5661 6.092122 TCACACTAGTATCGAAAAATGGCTTG 59.908 38.462 0.00 0.00 0.00 4.01
2342 5662 6.170506 TCACACTAGTATCGAAAAATGGCTT 58.829 36.000 0.00 0.00 0.00 4.35
2343 5663 5.730550 TCACACTAGTATCGAAAAATGGCT 58.269 37.500 0.00 0.00 0.00 4.75
2344 5664 6.604735 ATCACACTAGTATCGAAAAATGGC 57.395 37.500 0.00 0.00 0.00 4.40
2345 5665 8.141909 TCCTATCACACTAGTATCGAAAAATGG 58.858 37.037 0.00 0.00 0.00 3.16
2353 5673 4.989797 ACGACTCCTATCACACTAGTATCG 59.010 45.833 0.00 0.00 0.00 2.92
2358 5678 6.050432 ACTCTTACGACTCCTATCACACTAG 58.950 44.000 0.00 0.00 0.00 2.57
2361 5681 5.123502 TGAACTCTTACGACTCCTATCACAC 59.876 44.000 0.00 0.00 0.00 3.82
2363 5683 5.814764 TGAACTCTTACGACTCCTATCAC 57.185 43.478 0.00 0.00 0.00 3.06
2368 5688 3.635373 TGTGTTGAACTCTTACGACTCCT 59.365 43.478 0.00 0.00 0.00 3.69
2387 5707 7.574404 ATTGCTATCAATTGACAGTTCACTGTG 60.574 37.037 17.35 0.17 46.86 3.66
2389 5709 6.745907 CATTGCTATCAATTGACAGTTCACTG 59.254 38.462 14.94 5.36 43.67 3.66
2440 5768 8.067751 ACATGACACATAGCGATATAGGTATT 57.932 34.615 0.00 0.00 33.09 1.89
2445 5773 6.790282 AGCTACATGACACATAGCGATATAG 58.210 40.000 0.00 0.00 44.91 1.31
2447 5775 5.651387 AGCTACATGACACATAGCGATAT 57.349 39.130 0.00 0.00 44.91 1.63
2449 5777 5.453567 TTAGCTACATGACACATAGCGAT 57.546 39.130 0.00 0.00 44.91 4.58
2456 5784 7.875554 TGACAACTAAATTAGCTACATGACACA 59.124 33.333 0.00 0.00 0.00 3.72
2457 5785 8.251750 TGACAACTAAATTAGCTACATGACAC 57.748 34.615 0.00 0.00 0.00 3.67
2459 5787 7.852945 GCATGACAACTAAATTAGCTACATGAC 59.147 37.037 21.59 14.32 35.09 3.06
2466 5794 5.500234 TGGAGCATGACAACTAAATTAGCT 58.500 37.500 0.00 0.00 0.00 3.32
2510 5838 8.697507 ATGTTTGAACTCTTCCTTGTTTAGAT 57.302 30.769 0.00 0.00 0.00 1.98
2516 5844 5.357032 ACGAAATGTTTGAACTCTTCCTTGT 59.643 36.000 0.00 0.00 0.00 3.16
2517 5845 5.821204 ACGAAATGTTTGAACTCTTCCTTG 58.179 37.500 0.00 0.00 0.00 3.61
2520 5848 5.444122 CAGACGAAATGTTTGAACTCTTCC 58.556 41.667 0.00 0.00 34.70 3.46
2521 5849 5.007724 ACCAGACGAAATGTTTGAACTCTTC 59.992 40.000 0.00 0.00 34.70 2.87
2529 5857 8.901748 CATACTTTAAACCAGACGAAATGTTTG 58.098 33.333 0.00 0.00 33.36 2.93
2535 5863 5.406175 CGTCCATACTTTAAACCAGACGAAA 59.594 40.000 12.54 0.00 46.41 3.46
2610 5970 1.346068 ACAGGCCAGAGAACAGACTTC 59.654 52.381 5.01 0.00 0.00 3.01
2617 5977 2.737252 CGAGTAAAACAGGCCAGAGAAC 59.263 50.000 5.01 0.00 0.00 3.01
2623 5983 4.390048 GCCGAGTAAAACAGGCCA 57.610 55.556 5.01 0.00 43.54 5.36
2629 5989 2.224784 ACACCGAATTGCCGAGTAAAAC 59.775 45.455 0.00 0.00 0.00 2.43
2630 5990 2.496111 ACACCGAATTGCCGAGTAAAA 58.504 42.857 0.00 0.00 0.00 1.52
2634 5994 0.534203 ACAACACCGAATTGCCGAGT 60.534 50.000 0.00 0.00 0.00 4.18
2637 5997 0.309302 TCAACAACACCGAATTGCCG 59.691 50.000 0.00 0.00 0.00 5.69
2638 5998 1.930371 GCTCAACAACACCGAATTGCC 60.930 52.381 0.00 0.00 0.00 4.52
2639 5999 1.001378 AGCTCAACAACACCGAATTGC 60.001 47.619 0.00 0.00 0.00 3.56
2640 6000 2.549754 AGAGCTCAACAACACCGAATTG 59.450 45.455 17.77 0.00 0.00 2.32
2641 6001 2.549754 CAGAGCTCAACAACACCGAATT 59.450 45.455 17.77 0.00 0.00 2.17
2643 6003 1.134521 ACAGAGCTCAACAACACCGAA 60.135 47.619 17.77 0.00 0.00 4.30
2645 6005 0.583438 CACAGAGCTCAACAACACCG 59.417 55.000 17.77 0.00 0.00 4.94
2647 6007 3.764885 AAACACAGAGCTCAACAACAC 57.235 42.857 17.77 0.00 0.00 3.32
2648 6008 6.449635 AAATAAACACAGAGCTCAACAACA 57.550 33.333 17.77 0.00 0.00 3.33
2652 6012 8.887717 AGATGATAAATAAACACAGAGCTCAAC 58.112 33.333 17.77 0.00 0.00 3.18
2704 6080 6.903883 ATTAGTACTGCAAATAGAACACGG 57.096 37.500 5.39 0.00 0.00 4.94
2705 6081 8.402326 TGTATTAGTACTGCAAATAGAACACG 57.598 34.615 5.39 0.00 0.00 4.49
2713 6089 8.863872 AAGTCCTTTGTATTAGTACTGCAAAT 57.136 30.769 5.39 0.00 0.00 2.32
2722 6150 6.636454 TCCATGGAAGTCCTTTGTATTAGT 57.364 37.500 13.46 0.00 36.82 2.24
2727 6155 6.389869 AGGAATATCCATGGAAGTCCTTTGTA 59.610 38.462 27.10 11.88 39.61 2.41
2730 6158 6.131961 CAAGGAATATCCATGGAAGTCCTTT 58.868 40.000 33.73 23.67 39.01 3.11
2732 6160 4.446889 GCAAGGAATATCCATGGAAGTCCT 60.447 45.833 27.10 27.10 39.61 3.85
2759 6187 5.653255 AGGGATTATGCTTGATACACCTT 57.347 39.130 0.00 0.00 0.00 3.50
2802 6230 8.777413 CATCGACAATATTCTGGACACAATATT 58.223 33.333 0.00 1.32 36.17 1.28
2803 6231 7.933577 ACATCGACAATATTCTGGACACAATAT 59.066 33.333 0.00 0.00 0.00 1.28
2804 6232 7.272244 ACATCGACAATATTCTGGACACAATA 58.728 34.615 0.00 0.00 0.00 1.90
2808 6236 7.653713 AGATAACATCGACAATATTCTGGACAC 59.346 37.037 0.00 0.00 0.00 3.67
2854 6564 8.044574 TCCTGATGGAATAAGGTGATCAATAA 57.955 34.615 0.00 0.00 46.09 1.40
2871 6581 2.687297 TCTCCTCCAGAATCCTGATGG 58.313 52.381 0.00 0.00 43.02 3.51
2901 6611 3.248024 TGGGATAGCCAACGGATTCTAT 58.752 45.455 0.00 0.00 35.15 1.98
2952 6662 1.001378 GAGCAACATGGAAAGCAACGT 60.001 47.619 0.00 0.00 0.00 3.99
2972 6682 1.071385 AGAGTGCACAAAGGAGAGGTG 59.929 52.381 21.04 0.00 35.68 4.00
2996 6706 9.454859 AAGAAATAAGCAGTACAGAAATTAGCT 57.545 29.630 0.00 0.00 0.00 3.32
3002 6712 9.344772 TGGTTAAAGAAATAAGCAGTACAGAAA 57.655 29.630 0.00 0.00 38.10 2.52
3012 6722 7.035612 CCCATTGACTGGTTAAAGAAATAAGC 58.964 38.462 0.00 0.00 44.30 3.09
3041 6751 2.662006 TCCTCAAATGTCTCGAGCAG 57.338 50.000 7.81 0.00 0.00 4.24
3061 6771 2.223900 TGCACGCAATTCACCAAATTCA 60.224 40.909 0.00 0.00 35.32 2.57
3064 6774 2.339418 CATGCACGCAATTCACCAAAT 58.661 42.857 0.00 0.00 0.00 2.32
3076 6786 1.599542 GGATACTCTTTCCATGCACGC 59.400 52.381 0.00 0.00 33.21 5.34
3103 6813 4.080243 TCTGTAGAACCAGGGTTTGAAACA 60.080 41.667 10.53 6.86 38.60 2.83
3124 6834 1.352352 AGTAGTGCCCAAACATGCTCT 59.648 47.619 0.00 0.00 0.00 4.09
3128 6838 2.513753 TGGAAGTAGTGCCCAAACATG 58.486 47.619 0.00 0.00 0.00 3.21
3139 6849 8.514330 TTGTAACAACATCTTTTGGAAGTAGT 57.486 30.769 0.00 0.00 34.41 2.73
3150 6860 9.747898 TTAGGGATATGTTTGTAACAACATCTT 57.252 29.630 2.38 0.00 45.86 2.40
3174 6884 4.765273 TGAAGCAAGTCTGACAACACTTA 58.235 39.130 10.88 0.00 0.00 2.24
3186 6896 3.002791 TCACCATCGAATGAAGCAAGTC 58.997 45.455 0.00 0.00 0.00 3.01
3224 6935 8.055181 AGATCAAATGCTAAGGGAAGTAATGAA 58.945 33.333 0.00 0.00 0.00 2.57
3239 6950 8.844244 GTGATTAGTAATTGGAGATCAAATGCT 58.156 33.333 0.00 0.00 39.05 3.79
3267 6984 9.436957 CTCACACTTCCTACACATAATAACTTT 57.563 33.333 0.00 0.00 0.00 2.66
3275 6992 4.157246 ACACCTCACACTTCCTACACATA 58.843 43.478 0.00 0.00 0.00 2.29
3288 7005 1.109609 TGCATGCAAAACACCTCACA 58.890 45.000 20.30 0.00 0.00 3.58
3296 7013 1.300853 AAGCCCGTGCATGCAAAAC 60.301 52.632 24.58 12.41 41.13 2.43
3385 7102 4.971939 TCAATCTTGAAGTGATCACCACA 58.028 39.130 22.21 18.36 39.12 4.17
3411 7128 6.429151 ACAGTAAGGACAAACCCTTAAGTTT 58.571 36.000 0.97 0.00 46.84 2.66
3436 7153 8.209584 CCATCATCTATCTTGAGGAGAGAAAAA 58.790 37.037 0.00 0.00 44.16 1.94
3437 7154 7.346698 ACCATCATCTATCTTGAGGAGAGAAAA 59.653 37.037 0.00 0.00 44.16 2.29
3438 7155 6.843333 ACCATCATCTATCTTGAGGAGAGAAA 59.157 38.462 0.00 0.00 44.16 2.52
3473 7199 5.124457 TCAATCTGCAATAAAAGGTCAGCTC 59.876 40.000 0.00 0.00 0.00 4.09
3474 7200 5.012239 TCAATCTGCAATAAAAGGTCAGCT 58.988 37.500 0.00 0.00 0.00 4.24
3475 7201 5.098211 GTCAATCTGCAATAAAAGGTCAGC 58.902 41.667 0.00 0.00 0.00 4.26
3476 7202 5.106555 ACGTCAATCTGCAATAAAAGGTCAG 60.107 40.000 0.00 0.00 0.00 3.51
3477 7203 4.759693 ACGTCAATCTGCAATAAAAGGTCA 59.240 37.500 0.00 0.00 0.00 4.02
3478 7204 5.088739 CACGTCAATCTGCAATAAAAGGTC 58.911 41.667 0.00 0.00 0.00 3.85
3480 7206 5.046910 ACACGTCAATCTGCAATAAAAGG 57.953 39.130 0.00 0.00 0.00 3.11
3516 7244 1.259840 ATGTCCCCTTGGCATGTTGC 61.260 55.000 0.00 0.00 44.08 4.17
3567 7295 1.309950 CCTGCTCAAGCCTGATGATG 58.690 55.000 0.00 0.00 41.18 3.07
3576 7304 1.144936 ACGGATAGCCTGCTCAAGC 59.855 57.895 0.00 0.00 42.50 4.01
3583 7311 0.179048 TGAATGCCACGGATAGCCTG 60.179 55.000 0.00 0.00 0.00 4.85
3587 7315 2.224378 ACTGGATGAATGCCACGGATAG 60.224 50.000 0.00 0.00 0.00 2.08
3602 7330 6.656902 TCTTCAGAGCAAATATCAACTGGAT 58.343 36.000 0.00 0.00 40.14 3.41
3619 7347 8.258850 ACCGGTTTATATAAATCCTCTTCAGA 57.741 34.615 11.00 0.00 0.00 3.27
3620 7348 9.640963 CTACCGGTTTATATAAATCCTCTTCAG 57.359 37.037 15.04 0.00 0.00 3.02
3635 7363 3.528532 GCTACAGCAACTACCGGTTTAT 58.471 45.455 15.04 0.00 41.59 1.40
3642 7370 1.411493 GACGCGCTACAGCAACTACC 61.411 60.000 5.73 0.00 42.21 3.18
3648 7376 0.165727 CAATTTGACGCGCTACAGCA 59.834 50.000 5.73 0.00 42.21 4.41
3652 7380 3.408150 CTTCTTCAATTTGACGCGCTAC 58.592 45.455 5.73 0.00 0.00 3.58
3696 7424 3.616821 TCGACTTGTCAAGACACACTTTG 59.383 43.478 19.53 0.00 41.67 2.77
3703 7431 1.040646 AGGCTCGACTTGTCAAGACA 58.959 50.000 19.53 0.00 39.98 3.41
3704 7432 1.000163 TCAGGCTCGACTTGTCAAGAC 60.000 52.381 19.53 12.00 0.00 3.01
3715 7443 2.171237 ACATGGAATCAATCAGGCTCGA 59.829 45.455 0.00 0.00 0.00 4.04
3717 7445 4.202090 GGAAACATGGAATCAATCAGGCTC 60.202 45.833 0.00 0.00 0.00 4.70
3718 7446 3.703052 GGAAACATGGAATCAATCAGGCT 59.297 43.478 0.00 0.00 0.00 4.58
3720 7448 4.708421 ACTGGAAACATGGAATCAATCAGG 59.292 41.667 0.00 0.00 41.51 3.86
3721 7449 5.184479 ACACTGGAAACATGGAATCAATCAG 59.816 40.000 0.00 0.00 41.51 2.90
3722 7450 5.078949 ACACTGGAAACATGGAATCAATCA 58.921 37.500 0.00 0.00 41.51 2.57
3723 7451 5.393461 GGACACTGGAAACATGGAATCAATC 60.393 44.000 0.00 0.00 41.51 2.67
3730 7458 1.774254 AGTGGACACTGGAAACATGGA 59.226 47.619 3.82 0.00 40.75 3.41
3731 7459 2.276732 AGTGGACACTGGAAACATGG 57.723 50.000 3.82 0.00 40.75 3.66
3734 7462 2.799126 ACAAGTGGACACTGGAAACA 57.201 45.000 13.55 0.00 41.58 2.83
3735 7463 5.570234 TTTTACAAGTGGACACTGGAAAC 57.430 39.130 13.55 0.00 41.58 2.78
3736 7464 5.888724 TGATTTTACAAGTGGACACTGGAAA 59.111 36.000 13.55 10.06 41.58 3.13
3737 7465 5.441500 TGATTTTACAAGTGGACACTGGAA 58.558 37.500 13.55 4.95 41.58 3.53
3738 7466 5.042463 TGATTTTACAAGTGGACACTGGA 57.958 39.130 13.55 0.00 41.58 3.86
3740 7468 7.307989 CCTTACTGATTTTACAAGTGGACACTG 60.308 40.741 5.63 3.44 41.58 3.66
3741 7469 6.710744 CCTTACTGATTTTACAAGTGGACACT 59.289 38.462 0.00 0.00 44.94 3.55
3742 7470 6.485648 ACCTTACTGATTTTACAAGTGGACAC 59.514 38.462 0.00 0.00 0.00 3.67
3747 7478 9.825972 CACAATACCTTACTGATTTTACAAGTG 57.174 33.333 0.00 0.00 0.00 3.16
3762 7493 9.613428 CCAAGAGATATTTGTCACAATACCTTA 57.387 33.333 0.00 0.00 0.00 2.69
3769 7500 4.935205 CGACCCAAGAGATATTTGTCACAA 59.065 41.667 0.00 0.00 0.00 3.33
3770 7501 4.020573 ACGACCCAAGAGATATTTGTCACA 60.021 41.667 0.00 0.00 0.00 3.58
3771 7502 4.504858 ACGACCCAAGAGATATTTGTCAC 58.495 43.478 0.00 0.00 0.00 3.67
3775 7506 6.978343 TGTAAACGACCCAAGAGATATTTG 57.022 37.500 0.00 0.00 0.00 2.32
3780 7511 5.934402 ACTATGTAAACGACCCAAGAGAT 57.066 39.130 0.00 0.00 0.00 2.75
3782 7513 5.126707 ACCTACTATGTAAACGACCCAAGAG 59.873 44.000 0.00 0.00 0.00 2.85
3784 7515 5.107133 CACCTACTATGTAAACGACCCAAG 58.893 45.833 0.00 0.00 0.00 3.61
3785 7516 4.621274 GCACCTACTATGTAAACGACCCAA 60.621 45.833 0.00 0.00 0.00 4.12
3788 7519 4.382345 AGCACCTACTATGTAAACGACC 57.618 45.455 0.00 0.00 0.00 4.79
3789 7520 9.688592 ATTTATAGCACCTACTATGTAAACGAC 57.311 33.333 0.00 0.00 34.66 4.34
3824 7556 9.981114 TCGATTAATGAGCTCAAATGTATTCTA 57.019 29.630 22.50 6.37 0.00 2.10
3825 7557 8.768955 GTCGATTAATGAGCTCAAATGTATTCT 58.231 33.333 22.50 0.00 0.00 2.40
3826 7558 8.012241 GGTCGATTAATGAGCTCAAATGTATTC 58.988 37.037 22.50 13.87 0.00 1.75
3827 7559 7.716998 AGGTCGATTAATGAGCTCAAATGTATT 59.283 33.333 22.50 11.81 39.89 1.89
3828 7560 7.220030 AGGTCGATTAATGAGCTCAAATGTAT 58.780 34.615 22.50 9.92 39.89 2.29
3829 7561 6.582636 AGGTCGATTAATGAGCTCAAATGTA 58.417 36.000 22.50 8.02 39.89 2.29
3830 7562 5.431765 AGGTCGATTAATGAGCTCAAATGT 58.568 37.500 22.50 7.64 39.89 2.71
3831 7563 5.998454 AGGTCGATTAATGAGCTCAAATG 57.002 39.130 22.50 11.27 39.89 2.32
3833 7565 7.722363 TGTATAGGTCGATTAATGAGCTCAAA 58.278 34.615 22.50 12.18 42.74 2.69
3890 7622 5.106869 GGACAAGTTGTAATGACGCACATAA 60.107 40.000 8.88 0.00 38.38 1.90
3894 7626 2.546368 TGGACAAGTTGTAATGACGCAC 59.454 45.455 8.88 0.00 0.00 5.34
3896 7628 4.419522 AATGGACAAGTTGTAATGACGC 57.580 40.909 8.88 0.00 0.00 5.19
3899 7631 8.154203 TCTCAGTTAATGGACAAGTTGTAATGA 58.846 33.333 8.88 6.35 0.00 2.57
3901 7633 7.117812 CGTCTCAGTTAATGGACAAGTTGTAAT 59.882 37.037 8.88 3.15 31.98 1.89
3902 7634 6.422701 CGTCTCAGTTAATGGACAAGTTGTAA 59.577 38.462 8.88 0.53 31.98 2.41
3921 7653 6.811665 CCAATACAGAAAAGATACACGTCTCA 59.188 38.462 0.00 0.00 0.00 3.27
3922 7654 6.255887 CCCAATACAGAAAAGATACACGTCTC 59.744 42.308 0.00 0.00 0.00 3.36
3923 7655 6.106673 CCCAATACAGAAAAGATACACGTCT 58.893 40.000 0.00 0.00 0.00 4.18
3926 7658 4.260212 CGCCCAATACAGAAAAGATACACG 60.260 45.833 0.00 0.00 0.00 4.49
3927 7659 4.035208 CCGCCCAATACAGAAAAGATACAC 59.965 45.833 0.00 0.00 0.00 2.90
3930 7662 3.434453 CCCCGCCCAATACAGAAAAGATA 60.434 47.826 0.00 0.00 0.00 1.98
3933 7665 1.102978 CCCCGCCCAATACAGAAAAG 58.897 55.000 0.00 0.00 0.00 2.27
3938 7670 0.823356 CCAATCCCCGCCCAATACAG 60.823 60.000 0.00 0.00 0.00 2.74
3940 7672 0.537371 CTCCAATCCCCGCCCAATAC 60.537 60.000 0.00 0.00 0.00 1.89
3942 7674 2.603008 CTCCAATCCCCGCCCAAT 59.397 61.111 0.00 0.00 0.00 3.16
3943 7675 3.738481 CCTCCAATCCCCGCCCAA 61.738 66.667 0.00 0.00 0.00 4.12
3952 7686 3.895704 TTAATAAGGGGGCCTCCAATC 57.104 47.619 27.77 0.00 37.22 2.67
3962 7696 7.675161 AAGTCCCATCAAAATTAATAAGGGG 57.325 36.000 0.00 0.00 35.74 4.79
3973 7707 6.325028 TCATACCAACAAAAGTCCCATCAAAA 59.675 34.615 0.00 0.00 0.00 2.44
3994 7728 4.343814 TCGCTTCCATCATAGTGGTTCATA 59.656 41.667 0.00 0.00 40.27 2.15
4015 7749 6.229561 CTTGGAAGGAAAGTAGTTTCTTCG 57.770 41.667 19.85 7.93 41.72 3.79
4031 7765 5.964958 TCAACAATCTTAAGCCTTGGAAG 57.035 39.130 16.91 9.44 0.00 3.46
4033 7767 6.916360 ATTTCAACAATCTTAAGCCTTGGA 57.084 33.333 16.91 7.20 0.00 3.53
4058 7792 6.045072 TCGCTGATTAACCTCTCCTTTTAA 57.955 37.500 0.00 0.00 0.00 1.52
4094 7829 9.515226 ACCTAAATAGCAACAAGTCATAGAAAA 57.485 29.630 0.00 0.00 0.00 2.29
4101 7836 5.183228 GCCTACCTAAATAGCAACAAGTCA 58.817 41.667 0.00 0.00 0.00 3.41
4104 7839 4.576463 CCTGCCTACCTAAATAGCAACAAG 59.424 45.833 0.00 0.00 0.00 3.16
4110 7845 1.271434 GGCCCTGCCTACCTAAATAGC 60.271 57.143 0.00 0.00 46.69 2.97
4374 8126 1.389106 GTCACGCAATCAACTCGTACC 59.611 52.381 0.00 0.00 34.81 3.34
4430 8189 3.442625 AGACGTGAACTCACAATCGGATA 59.557 43.478 10.32 0.00 46.75 2.59
4574 8334 1.629345 CGATGTGCATGAGCGTGTGT 61.629 55.000 0.00 0.00 46.23 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.