Multiple sequence alignment - TraesCS3D01G302700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G302700 chr3D 100.000 4497 0 0 1 4497 417422020 417426516 0.000000e+00 8305.0
1 TraesCS3D01G302700 chr3D 80.120 498 66 16 27 504 159436935 159437419 1.550000e-89 340.0
2 TraesCS3D01G302700 chr3D 78.423 482 61 16 144 600 467479928 467479465 1.590000e-69 274.0
3 TraesCS3D01G302700 chr3A 94.885 1525 66 6 2201 3716 533129519 533127998 0.000000e+00 2374.0
4 TraesCS3D01G302700 chr3A 94.783 920 25 13 738 1644 533130913 533130004 0.000000e+00 1411.0
5 TraesCS3D01G302700 chr3A 87.676 641 73 5 1 638 533145229 533144592 0.000000e+00 741.0
6 TraesCS3D01G302700 chr3A 85.503 338 33 10 1658 1982 533130027 533129693 5.570000e-89 339.0
7 TraesCS3D01G302700 chr3A 94.853 136 5 2 2064 2198 533129694 533129560 1.270000e-50 211.0
8 TraesCS3D01G302700 chr3B 95.624 1371 51 8 2201 3569 543841492 543842855 0.000000e+00 2191.0
9 TraesCS3D01G302700 chr3B 89.869 612 51 7 13 621 543754468 543755071 0.000000e+00 776.0
10 TraesCS3D01G302700 chr3B 96.941 425 12 1 1188 1612 543840592 543841015 0.000000e+00 712.0
11 TraesCS3D01G302700 chr3B 97.297 407 10 1 714 1120 543839772 543840177 0.000000e+00 689.0
12 TraesCS3D01G302700 chr3B 91.852 135 10 1 2064 2198 543841322 543841455 2.140000e-43 187.0
13 TraesCS3D01G302700 chr3B 88.776 98 8 2 1977 2073 654652703 654652798 2.840000e-22 117.0
14 TraesCS3D01G302700 chr3B 89.011 91 9 1 1975 2065 659714766 659714855 1.320000e-20 111.0
15 TraesCS3D01G302700 chr7D 92.327 808 42 4 3710 4497 593404889 593404082 0.000000e+00 1131.0
16 TraesCS3D01G302700 chr7D 87.044 795 81 14 3710 4497 618377450 618376671 0.000000e+00 878.0
17 TraesCS3D01G302700 chr7D 77.926 598 94 22 6 571 483874853 483875444 5.570000e-89 339.0
18 TraesCS3D01G302700 chr5D 90.932 805 44 15 3706 4497 124517651 124516863 0.000000e+00 1055.0
19 TraesCS3D01G302700 chr5D 82.530 166 28 1 407 572 426009592 426009428 1.300000e-30 145.0
20 TraesCS3D01G302700 chr7A 90.613 799 58 11 3706 4497 699459899 699459111 0.000000e+00 1044.0
21 TraesCS3D01G302700 chr7A 85.750 793 96 14 3707 4497 33091945 33092722 0.000000e+00 822.0
22 TraesCS3D01G302700 chr7A 81.081 518 78 9 1 504 435872603 435873114 3.260000e-106 396.0
23 TraesCS3D01G302700 chr7A 80.755 530 65 24 92 595 106823360 106823878 3.280000e-101 379.0
24 TraesCS3D01G302700 chr4A 87.234 799 76 13 3708 4497 436440968 436440187 0.000000e+00 887.0
25 TraesCS3D01G302700 chr5B 86.726 791 80 17 3710 4497 113457880 113458648 0.000000e+00 856.0
26 TraesCS3D01G302700 chr1D 86.391 823 48 15 3710 4497 62157532 62156739 0.000000e+00 841.0
27 TraesCS3D01G302700 chr1D 76.471 425 67 17 1 415 332972286 332971885 2.740000e-47 200.0
28 TraesCS3D01G302700 chrUn 85.823 790 95 14 3710 4497 82019974 82019200 0.000000e+00 822.0
29 TraesCS3D01G302700 chr4B 85.484 806 93 15 3708 4497 14844757 14845554 0.000000e+00 819.0
30 TraesCS3D01G302700 chr1B 84.672 822 92 8 3707 4496 150840319 150841138 0.000000e+00 789.0
31 TraesCS3D01G302700 chr1B 82.323 775 108 19 3710 4466 680089655 680088892 0.000000e+00 645.0
32 TraesCS3D01G302700 chr1B 90.217 92 7 2 1975 2065 523210960 523210870 7.900000e-23 119.0
33 TraesCS3D01G302700 chr1B 88.764 89 10 0 1977 2065 543504305 543504393 4.760000e-20 110.0
34 TraesCS3D01G302700 chr2D 85.246 488 34 9 3695 4148 38069317 38069800 6.810000e-128 468.0
35 TraesCS3D01G302700 chr2D 85.281 231 26 3 349 572 543517727 543517498 9.730000e-57 231.0
36 TraesCS3D01G302700 chr2D 75.837 418 69 25 1 409 32787583 32787977 2.760000e-42 183.0
37 TraesCS3D01G302700 chr2D 85.227 88 13 0 1981 2068 644147619 644147706 1.720000e-14 91.6
38 TraesCS3D01G302700 chr4D 81.043 575 84 17 30 588 450534106 450534671 6.910000e-118 435.0
39 TraesCS3D01G302700 chr4D 76.904 407 62 15 6 401 62115318 62115703 7.630000e-48 202.0
40 TraesCS3D01G302700 chr7B 79.368 601 102 14 1 587 200709491 200710083 1.950000e-108 403.0
41 TraesCS3D01G302700 chr6D 79.048 630 90 26 3 597 346270232 346270854 1.170000e-105 394.0
42 TraesCS3D01G302700 chr6D 80.916 524 76 12 1 504 388217593 388217074 4.220000e-105 392.0
43 TraesCS3D01G302700 chr6D 79.159 523 85 13 1 504 333001019 333001536 1.550000e-89 340.0
44 TraesCS3D01G302700 chr6D 90.411 73 5 2 1986 2057 81592032 81591961 1.330000e-15 95.3
45 TraesCS3D01G302700 chr2B 84.099 283 33 7 3710 3984 794099372 794099650 3.450000e-66 263.0
46 TraesCS3D01G302700 chr2B 84.099 283 33 7 3710 3984 794108517 794108795 3.450000e-66 263.0
47 TraesCS3D01G302700 chr6A 76.724 348 55 15 272 595 485159234 485159579 2.150000e-38 171.0
48 TraesCS3D01G302700 chr1A 93.506 77 5 0 1989 2065 473042131 473042207 1.020000e-21 115.0
49 TraesCS3D01G302700 chr2A 79.808 104 19 2 1972 2074 636929090 636928988 1.730000e-09 75.0
50 TraesCS3D01G302700 chr6B 82.716 81 14 0 606 686 10292234 10292154 6.240000e-09 73.1
51 TraesCS3D01G302700 chr6B 100.000 29 0 0 646 674 698337787 698337759 2.000000e-03 54.7
52 TraesCS3D01G302700 chr5A 100.000 38 0 0 649 686 592062583 592062546 2.240000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G302700 chr3D 417422020 417426516 4496 False 8305.00 8305 100.0000 1 4497 1 chr3D.!!$F2 4496
1 TraesCS3D01G302700 chr3A 533127998 533130913 2915 True 1083.75 2374 92.5060 738 3716 4 chr3A.!!$R2 2978
2 TraesCS3D01G302700 chr3A 533144592 533145229 637 True 741.00 741 87.6760 1 638 1 chr3A.!!$R1 637
3 TraesCS3D01G302700 chr3B 543839772 543842855 3083 False 944.75 2191 95.4285 714 3569 4 chr3B.!!$F4 2855
4 TraesCS3D01G302700 chr3B 543754468 543755071 603 False 776.00 776 89.8690 13 621 1 chr3B.!!$F1 608
5 TraesCS3D01G302700 chr7D 593404082 593404889 807 True 1131.00 1131 92.3270 3710 4497 1 chr7D.!!$R1 787
6 TraesCS3D01G302700 chr7D 618376671 618377450 779 True 878.00 878 87.0440 3710 4497 1 chr7D.!!$R2 787
7 TraesCS3D01G302700 chr7D 483874853 483875444 591 False 339.00 339 77.9260 6 571 1 chr7D.!!$F1 565
8 TraesCS3D01G302700 chr5D 124516863 124517651 788 True 1055.00 1055 90.9320 3706 4497 1 chr5D.!!$R1 791
9 TraesCS3D01G302700 chr7A 699459111 699459899 788 True 1044.00 1044 90.6130 3706 4497 1 chr7A.!!$R1 791
10 TraesCS3D01G302700 chr7A 33091945 33092722 777 False 822.00 822 85.7500 3707 4497 1 chr7A.!!$F1 790
11 TraesCS3D01G302700 chr7A 435872603 435873114 511 False 396.00 396 81.0810 1 504 1 chr7A.!!$F3 503
12 TraesCS3D01G302700 chr7A 106823360 106823878 518 False 379.00 379 80.7550 92 595 1 chr7A.!!$F2 503
13 TraesCS3D01G302700 chr4A 436440187 436440968 781 True 887.00 887 87.2340 3708 4497 1 chr4A.!!$R1 789
14 TraesCS3D01G302700 chr5B 113457880 113458648 768 False 856.00 856 86.7260 3710 4497 1 chr5B.!!$F1 787
15 TraesCS3D01G302700 chr1D 62156739 62157532 793 True 841.00 841 86.3910 3710 4497 1 chr1D.!!$R1 787
16 TraesCS3D01G302700 chrUn 82019200 82019974 774 True 822.00 822 85.8230 3710 4497 1 chrUn.!!$R1 787
17 TraesCS3D01G302700 chr4B 14844757 14845554 797 False 819.00 819 85.4840 3708 4497 1 chr4B.!!$F1 789
18 TraesCS3D01G302700 chr1B 150840319 150841138 819 False 789.00 789 84.6720 3707 4496 1 chr1B.!!$F1 789
19 TraesCS3D01G302700 chr1B 680088892 680089655 763 True 645.00 645 82.3230 3710 4466 1 chr1B.!!$R2 756
20 TraesCS3D01G302700 chr4D 450534106 450534671 565 False 435.00 435 81.0430 30 588 1 chr4D.!!$F2 558
21 TraesCS3D01G302700 chr7B 200709491 200710083 592 False 403.00 403 79.3680 1 587 1 chr7B.!!$F1 586
22 TraesCS3D01G302700 chr6D 346270232 346270854 622 False 394.00 394 79.0480 3 597 1 chr6D.!!$F2 594
23 TraesCS3D01G302700 chr6D 388217074 388217593 519 True 392.00 392 80.9160 1 504 1 chr6D.!!$R2 503
24 TraesCS3D01G302700 chr6D 333001019 333001536 517 False 340.00 340 79.1590 1 504 1 chr6D.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 738 0.103026 GGATGCGGGAGGAAATTTGC 59.897 55.0 0.68 0.68 0.00 3.68 F
1169 1240 0.107945 AATCTCTCTTGCCACGGCTC 60.108 55.0 9.92 0.00 42.51 4.70 F
1817 2253 0.179054 GGGATTGGACGAGGTTAGGC 60.179 60.0 0.00 0.00 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 2228 0.394565 CCTCGTCCAATCCCCATCTC 59.605 60.000 0.00 0.0 0.00 2.75 R
3055 3549 1.269778 GGCGATTCATCCTCATCGTCA 60.270 52.381 1.47 0.0 45.01 4.35 R
3741 4237 0.462047 CCAGACGGCGATTTTAGGCT 60.462 55.000 16.62 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 220 3.123674 GACATCACCGAGTCCACAC 57.876 57.895 0.00 0.00 0.00 3.82
389 418 1.342174 GACGTGGAGGTGGACAACTTA 59.658 52.381 0.00 0.00 0.00 2.24
439 510 0.386858 CGAGGCGAAACTGAAGACGA 60.387 55.000 0.00 0.00 0.00 4.20
510 581 3.463944 CGGCGACCATTTAGACCTAATT 58.536 45.455 0.00 0.00 0.00 1.40
580 651 7.799914 ACGTTTAAATGAAATCCGTACTTGTTC 59.200 33.333 14.33 0.00 30.47 3.18
600 671 4.839668 TCAAATGAATTTCGTCCGGTTT 57.160 36.364 0.00 0.00 0.00 3.27
601 672 5.189659 TCAAATGAATTTCGTCCGGTTTT 57.810 34.783 0.00 0.00 0.00 2.43
602 673 4.979197 TCAAATGAATTTCGTCCGGTTTTG 59.021 37.500 0.00 0.00 0.00 2.44
603 674 4.577834 AATGAATTTCGTCCGGTTTTGT 57.422 36.364 0.00 0.00 0.00 2.83
604 675 3.612472 TGAATTTCGTCCGGTTTTGTC 57.388 42.857 0.00 0.00 0.00 3.18
605 676 2.291190 TGAATTTCGTCCGGTTTTGTCC 59.709 45.455 0.00 0.00 0.00 4.02
606 677 2.265589 ATTTCGTCCGGTTTTGTCCT 57.734 45.000 0.00 0.00 0.00 3.85
607 678 1.585297 TTTCGTCCGGTTTTGTCCTC 58.415 50.000 0.00 0.00 0.00 3.71
608 679 0.754472 TTCGTCCGGTTTTGTCCTCT 59.246 50.000 0.00 0.00 0.00 3.69
609 680 0.316204 TCGTCCGGTTTTGTCCTCTC 59.684 55.000 0.00 0.00 0.00 3.20
610 681 1.007336 CGTCCGGTTTTGTCCTCTCG 61.007 60.000 0.00 0.00 0.00 4.04
611 682 1.005394 TCCGGTTTTGTCCTCTCGC 60.005 57.895 0.00 0.00 0.00 5.03
612 683 1.301401 CCGGTTTTGTCCTCTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
613 684 0.673644 CCGGTTTTGTCCTCTCGCAT 60.674 55.000 0.00 0.00 0.00 4.73
614 685 0.721718 CGGTTTTGTCCTCTCGCATC 59.278 55.000 0.00 0.00 0.00 3.91
615 686 1.673033 CGGTTTTGTCCTCTCGCATCT 60.673 52.381 0.00 0.00 0.00 2.90
616 687 1.734465 GGTTTTGTCCTCTCGCATCTG 59.266 52.381 0.00 0.00 0.00 2.90
617 688 2.417719 GTTTTGTCCTCTCGCATCTGT 58.582 47.619 0.00 0.00 0.00 3.41
618 689 2.084610 TTTGTCCTCTCGCATCTGTG 57.915 50.000 0.00 0.00 0.00 3.66
619 690 0.969149 TTGTCCTCTCGCATCTGTGT 59.031 50.000 0.00 0.00 0.00 3.72
620 691 0.969149 TGTCCTCTCGCATCTGTGTT 59.031 50.000 0.00 0.00 0.00 3.32
621 692 1.067565 TGTCCTCTCGCATCTGTGTTC 60.068 52.381 0.00 0.00 0.00 3.18
622 693 1.067565 GTCCTCTCGCATCTGTGTTCA 60.068 52.381 0.00 0.00 0.00 3.18
623 694 1.067565 TCCTCTCGCATCTGTGTTCAC 60.068 52.381 0.00 0.00 0.00 3.18
624 695 0.987715 CTCTCGCATCTGTGTTCACG 59.012 55.000 0.00 0.00 0.00 4.35
625 696 0.596082 TCTCGCATCTGTGTTCACGA 59.404 50.000 0.00 0.00 0.00 4.35
626 697 1.000717 TCTCGCATCTGTGTTCACGAA 60.001 47.619 0.00 0.00 0.00 3.85
627 698 1.125021 CTCGCATCTGTGTTCACGAAC 59.875 52.381 2.89 2.89 41.50 3.95
628 699 1.139989 CGCATCTGTGTTCACGAACT 58.860 50.000 11.01 0.00 41.67 3.01
629 700 1.136529 CGCATCTGTGTTCACGAACTG 60.137 52.381 11.01 2.30 41.67 3.16
630 701 2.135139 GCATCTGTGTTCACGAACTGA 58.865 47.619 11.01 7.22 41.67 3.41
631 702 2.738846 GCATCTGTGTTCACGAACTGAT 59.261 45.455 11.01 8.87 41.67 2.90
632 703 3.187227 GCATCTGTGTTCACGAACTGATT 59.813 43.478 11.01 0.00 41.67 2.57
633 704 4.667668 GCATCTGTGTTCACGAACTGATTC 60.668 45.833 11.01 4.12 41.67 2.52
634 705 4.053469 TCTGTGTTCACGAACTGATTCA 57.947 40.909 11.01 0.00 41.67 2.57
635 706 4.631131 TCTGTGTTCACGAACTGATTCAT 58.369 39.130 11.01 0.00 41.67 2.57
636 707 5.056480 TCTGTGTTCACGAACTGATTCATT 58.944 37.500 11.01 0.00 41.67 2.57
637 708 5.527214 TCTGTGTTCACGAACTGATTCATTT 59.473 36.000 11.01 0.00 41.67 2.32
638 709 6.704050 TCTGTGTTCACGAACTGATTCATTTA 59.296 34.615 11.01 0.00 41.67 1.40
639 710 7.387673 TCTGTGTTCACGAACTGATTCATTTAT 59.612 33.333 11.01 0.00 41.67 1.40
640 711 7.518161 TGTGTTCACGAACTGATTCATTTATC 58.482 34.615 11.01 0.00 41.67 1.75
641 712 7.172361 TGTGTTCACGAACTGATTCATTTATCA 59.828 33.333 11.01 0.00 41.67 2.15
642 713 8.015087 GTGTTCACGAACTGATTCATTTATCAA 58.985 33.333 11.01 0.00 41.67 2.57
643 714 8.015087 TGTTCACGAACTGATTCATTTATCAAC 58.985 33.333 11.01 0.00 41.67 3.18
644 715 7.665561 TCACGAACTGATTCATTTATCAACA 57.334 32.000 0.00 0.00 34.32 3.33
645 716 7.742151 TCACGAACTGATTCATTTATCAACAG 58.258 34.615 0.00 0.00 34.32 3.16
646 717 7.602265 TCACGAACTGATTCATTTATCAACAGA 59.398 33.333 0.00 0.00 34.32 3.41
647 718 7.901889 CACGAACTGATTCATTTATCAACAGAG 59.098 37.037 0.00 0.00 34.32 3.35
648 719 7.065085 ACGAACTGATTCATTTATCAACAGAGG 59.935 37.037 0.00 0.00 34.32 3.69
649 720 7.466455 CGAACTGATTCATTTATCAACAGAGGG 60.466 40.741 0.00 0.00 34.32 4.30
650 721 6.962182 ACTGATTCATTTATCAACAGAGGGA 58.038 36.000 0.00 0.00 34.32 4.20
651 722 7.580910 ACTGATTCATTTATCAACAGAGGGAT 58.419 34.615 0.00 0.00 34.32 3.85
652 723 7.501559 ACTGATTCATTTATCAACAGAGGGATG 59.498 37.037 0.00 0.00 34.32 3.51
653 724 6.263842 TGATTCATTTATCAACAGAGGGATGC 59.736 38.462 0.00 0.00 31.82 3.91
654 725 4.129380 TCATTTATCAACAGAGGGATGCG 58.871 43.478 0.00 0.00 0.00 4.73
655 726 2.620251 TTATCAACAGAGGGATGCGG 57.380 50.000 0.00 0.00 0.00 5.69
656 727 0.758734 TATCAACAGAGGGATGCGGG 59.241 55.000 0.00 0.00 0.00 6.13
657 728 0.982852 ATCAACAGAGGGATGCGGGA 60.983 55.000 0.00 0.00 0.00 5.14
658 729 1.153289 CAACAGAGGGATGCGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
659 730 2.370445 AACAGAGGGATGCGGGAGG 61.370 63.158 0.00 0.00 0.00 4.30
660 731 2.444706 CAGAGGGATGCGGGAGGA 60.445 66.667 0.00 0.00 0.00 3.71
661 732 2.066393 CAGAGGGATGCGGGAGGAA 61.066 63.158 0.00 0.00 0.00 3.36
662 733 1.306997 AGAGGGATGCGGGAGGAAA 60.307 57.895 0.00 0.00 0.00 3.13
663 734 0.695803 AGAGGGATGCGGGAGGAAAT 60.696 55.000 0.00 0.00 0.00 2.17
664 735 0.183731 GAGGGATGCGGGAGGAAATT 59.816 55.000 0.00 0.00 0.00 1.82
665 736 0.631212 AGGGATGCGGGAGGAAATTT 59.369 50.000 0.00 0.00 0.00 1.82
666 737 0.746659 GGGATGCGGGAGGAAATTTG 59.253 55.000 0.00 0.00 0.00 2.32
667 738 0.103026 GGATGCGGGAGGAAATTTGC 59.897 55.000 0.68 0.68 0.00 3.68
668 739 0.248621 GATGCGGGAGGAAATTTGCG 60.249 55.000 3.87 0.00 0.00 4.85
669 740 1.666209 ATGCGGGAGGAAATTTGCGG 61.666 55.000 3.87 0.00 0.00 5.69
670 741 3.063743 GCGGGAGGAAATTTGCGGG 62.064 63.158 3.87 0.00 0.00 6.13
671 742 1.677633 CGGGAGGAAATTTGCGGGT 60.678 57.895 3.87 0.00 0.00 5.28
672 743 1.248101 CGGGAGGAAATTTGCGGGTT 61.248 55.000 3.87 0.00 0.00 4.11
673 744 0.246360 GGGAGGAAATTTGCGGGTTG 59.754 55.000 3.87 0.00 0.00 3.77
674 745 0.389817 GGAGGAAATTTGCGGGTTGC 60.390 55.000 3.87 0.00 46.70 4.17
683 754 2.281484 GCGGGTTGCAGTTGGAGA 60.281 61.111 0.00 0.00 45.45 3.71
684 755 1.675641 GCGGGTTGCAGTTGGAGAT 60.676 57.895 0.00 0.00 45.45 2.75
685 756 1.926511 GCGGGTTGCAGTTGGAGATG 61.927 60.000 0.00 0.00 45.45 2.90
686 757 0.606401 CGGGTTGCAGTTGGAGATGT 60.606 55.000 0.00 0.00 0.00 3.06
687 758 1.168714 GGGTTGCAGTTGGAGATGTC 58.831 55.000 0.00 0.00 0.00 3.06
688 759 1.271597 GGGTTGCAGTTGGAGATGTCT 60.272 52.381 0.00 0.00 0.00 3.41
689 760 1.808945 GGTTGCAGTTGGAGATGTCTG 59.191 52.381 0.00 0.00 0.00 3.51
690 761 1.808945 GTTGCAGTTGGAGATGTCTGG 59.191 52.381 0.00 0.00 0.00 3.86
691 762 1.059098 TGCAGTTGGAGATGTCTGGT 58.941 50.000 0.00 0.00 0.00 4.00
692 763 1.002430 TGCAGTTGGAGATGTCTGGTC 59.998 52.381 0.00 0.00 0.00 4.02
693 764 1.677217 GCAGTTGGAGATGTCTGGTCC 60.677 57.143 0.00 0.00 0.00 4.46
694 765 0.898320 AGTTGGAGATGTCTGGTCCG 59.102 55.000 0.00 0.00 32.51 4.79
695 766 0.608640 GTTGGAGATGTCTGGTCCGT 59.391 55.000 0.00 0.00 32.51 4.69
696 767 0.608130 TTGGAGATGTCTGGTCCGTG 59.392 55.000 0.00 0.00 32.51 4.94
697 768 1.257750 TGGAGATGTCTGGTCCGTGG 61.258 60.000 0.00 0.00 32.51 4.94
698 769 0.970937 GGAGATGTCTGGTCCGTGGA 60.971 60.000 0.00 0.00 0.00 4.02
699 770 0.895530 GAGATGTCTGGTCCGTGGAA 59.104 55.000 0.00 0.00 0.00 3.53
700 771 1.275291 GAGATGTCTGGTCCGTGGAAA 59.725 52.381 0.00 0.00 0.00 3.13
701 772 1.697432 AGATGTCTGGTCCGTGGAAAA 59.303 47.619 0.00 0.00 0.00 2.29
702 773 2.105821 AGATGTCTGGTCCGTGGAAAAA 59.894 45.455 0.00 0.00 0.00 1.94
912 983 1.383248 CTCCGTCCCCTTCCTCCAT 60.383 63.158 0.00 0.00 0.00 3.41
960 1031 1.810441 CTCGCAGAAGGAGCAGCAG 60.810 63.158 0.00 0.00 34.09 4.24
1144 1215 4.825679 CCCCCACTCCCTCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
1145 1216 4.825679 CCCCACTCCCTCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1146 1217 3.700350 CCCACTCCCTCCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
1147 1218 2.456840 CCACTCCCTCCCTCCCTT 59.543 66.667 0.00 0.00 0.00 3.95
1148 1219 1.690985 CCACTCCCTCCCTCCCTTC 60.691 68.421 0.00 0.00 0.00 3.46
1152 1223 1.948243 ACTCCCTCCCTCCCTTCTAAT 59.052 52.381 0.00 0.00 0.00 1.73
1158 1229 3.142028 CCTCCCTCCCTTCTAATCTCTCT 59.858 52.174 0.00 0.00 0.00 3.10
1169 1240 0.107945 AATCTCTCTTGCCACGGCTC 60.108 55.000 9.92 0.00 42.51 4.70
1172 1243 2.811317 CTCTTGCCACGGCTCGAC 60.811 66.667 9.92 0.00 42.51 4.20
1186 1257 2.024871 CGACCGATCGGAGCTGAC 59.975 66.667 39.55 19.85 44.99 3.51
1479 1897 3.384348 GGTAGCTTCGACCCCACA 58.616 61.111 0.00 0.00 0.00 4.17
1593 2012 9.284594 GATTTGTTTATTTTGCTGTATCGCTTA 57.715 29.630 0.00 0.00 0.00 3.09
1594 2013 9.801873 ATTTGTTTATTTTGCTGTATCGCTTAT 57.198 25.926 0.00 0.00 0.00 1.73
1595 2014 9.632807 TTTGTTTATTTTGCTGTATCGCTTATT 57.367 25.926 0.00 0.00 0.00 1.40
1596 2015 9.632807 TTGTTTATTTTGCTGTATCGCTTATTT 57.367 25.926 0.00 0.00 0.00 1.40
1597 2016 9.632807 TGTTTATTTTGCTGTATCGCTTATTTT 57.367 25.926 0.00 0.00 0.00 1.82
1601 2020 8.856490 ATTTTGCTGTATCGCTTATTTTAAGG 57.144 30.769 0.00 0.00 0.00 2.69
1602 2021 7.618502 TTTGCTGTATCGCTTATTTTAAGGA 57.381 32.000 0.00 0.00 0.00 3.36
1603 2022 7.801716 TTGCTGTATCGCTTATTTTAAGGAT 57.198 32.000 0.00 1.67 0.00 3.24
1604 2023 7.801716 TGCTGTATCGCTTATTTTAAGGATT 57.198 32.000 0.00 0.00 0.00 3.01
1605 2024 7.639039 TGCTGTATCGCTTATTTTAAGGATTG 58.361 34.615 0.00 0.00 0.00 2.67
1606 2025 7.078228 GCTGTATCGCTTATTTTAAGGATTGG 58.922 38.462 0.00 0.00 0.00 3.16
1607 2026 7.255139 GCTGTATCGCTTATTTTAAGGATTGGT 60.255 37.037 0.00 0.00 0.00 3.67
1608 2027 8.514330 TGTATCGCTTATTTTAAGGATTGGTT 57.486 30.769 0.00 0.00 0.00 3.67
1609 2028 8.617809 TGTATCGCTTATTTTAAGGATTGGTTC 58.382 33.333 0.00 0.00 0.00 3.62
1610 2029 7.639113 ATCGCTTATTTTAAGGATTGGTTCA 57.361 32.000 0.00 0.00 0.00 3.18
1611 2030 7.083875 TCGCTTATTTTAAGGATTGGTTCAG 57.916 36.000 0.00 0.00 0.00 3.02
1612 2031 6.882140 TCGCTTATTTTAAGGATTGGTTCAGA 59.118 34.615 0.00 0.00 0.00 3.27
1613 2032 6.967199 CGCTTATTTTAAGGATTGGTTCAGAC 59.033 38.462 0.00 0.00 0.00 3.51
1614 2033 7.148239 CGCTTATTTTAAGGATTGGTTCAGACT 60.148 37.037 0.00 0.00 0.00 3.24
1615 2034 8.523658 GCTTATTTTAAGGATTGGTTCAGACTT 58.476 33.333 0.00 0.00 0.00 3.01
1619 2038 8.617290 TTTTAAGGATTGGTTCAGACTTAGAC 57.383 34.615 0.00 0.00 0.00 2.59
1620 2039 7.554959 TTAAGGATTGGTTCAGACTTAGACT 57.445 36.000 0.00 0.00 0.00 3.24
1621 2040 6.441088 AAGGATTGGTTCAGACTTAGACTT 57.559 37.500 0.00 0.00 0.00 3.01
1622 2041 5.799213 AGGATTGGTTCAGACTTAGACTTG 58.201 41.667 0.00 0.00 0.00 3.16
1623 2042 5.544176 AGGATTGGTTCAGACTTAGACTTGA 59.456 40.000 0.00 0.00 0.00 3.02
1624 2043 5.872070 GGATTGGTTCAGACTTAGACTTGAG 59.128 44.000 0.00 0.00 0.00 3.02
1625 2044 6.295349 GGATTGGTTCAGACTTAGACTTGAGA 60.295 42.308 0.00 0.00 0.00 3.27
1626 2045 5.713792 TGGTTCAGACTTAGACTTGAGAG 57.286 43.478 0.00 0.00 0.00 3.20
1627 2046 5.141182 TGGTTCAGACTTAGACTTGAGAGT 58.859 41.667 0.00 0.00 39.32 3.24
1628 2047 5.598830 TGGTTCAGACTTAGACTTGAGAGTT 59.401 40.000 0.00 0.00 35.88 3.01
1629 2048 5.923684 GGTTCAGACTTAGACTTGAGAGTTG 59.076 44.000 0.00 0.00 35.88 3.16
1630 2049 6.461788 GGTTCAGACTTAGACTTGAGAGTTGT 60.462 42.308 0.00 0.00 35.88 3.32
1631 2050 6.078202 TCAGACTTAGACTTGAGAGTTGTG 57.922 41.667 0.00 0.00 35.88 3.33
1632 2051 5.010112 TCAGACTTAGACTTGAGAGTTGTGG 59.990 44.000 0.00 0.00 35.88 4.17
1633 2052 4.282195 AGACTTAGACTTGAGAGTTGTGGG 59.718 45.833 0.00 0.00 35.88 4.61
1634 2053 3.967987 ACTTAGACTTGAGAGTTGTGGGT 59.032 43.478 0.00 0.00 35.88 4.51
1635 2054 4.409247 ACTTAGACTTGAGAGTTGTGGGTT 59.591 41.667 0.00 0.00 35.88 4.11
1636 2055 3.199880 AGACTTGAGAGTTGTGGGTTG 57.800 47.619 0.00 0.00 35.88 3.77
1637 2056 2.505819 AGACTTGAGAGTTGTGGGTTGT 59.494 45.455 0.00 0.00 35.88 3.32
1638 2057 3.054361 AGACTTGAGAGTTGTGGGTTGTT 60.054 43.478 0.00 0.00 35.88 2.83
1639 2058 3.016736 ACTTGAGAGTTGTGGGTTGTTG 58.983 45.455 0.00 0.00 29.87 3.33
1640 2059 3.278574 CTTGAGAGTTGTGGGTTGTTGA 58.721 45.455 0.00 0.00 0.00 3.18
1641 2060 3.576078 TGAGAGTTGTGGGTTGTTGAT 57.424 42.857 0.00 0.00 0.00 2.57
1642 2061 4.698201 TGAGAGTTGTGGGTTGTTGATA 57.302 40.909 0.00 0.00 0.00 2.15
1643 2062 5.241403 TGAGAGTTGTGGGTTGTTGATAT 57.759 39.130 0.00 0.00 0.00 1.63
1667 2086 5.367945 TCTTAAGGTTGGTTGAGAGTTGT 57.632 39.130 1.85 0.00 0.00 3.32
1716 2150 2.681097 GCCTGTACCTGAAATCCCAGAC 60.681 54.545 0.00 0.00 36.29 3.51
1756 2192 0.957395 AAAGGTCAGGCATGCTCACG 60.957 55.000 18.92 3.77 0.00 4.35
1774 2210 8.542497 TGCTCACGTTAGTTATCTTTGTTTAT 57.458 30.769 0.00 0.00 0.00 1.40
1802 2238 2.158400 TCTCAGACATCGAGATGGGGAT 60.158 50.000 16.37 0.00 42.91 3.85
1817 2253 0.179054 GGGATTGGACGAGGTTAGGC 60.179 60.000 0.00 0.00 0.00 3.93
1842 2278 1.603739 GACAGGGGAAAGGTGTGCC 60.604 63.158 0.00 0.00 0.00 5.01
1861 2300 7.303261 GTGTGCCAATGATAGATATTGTCATG 58.697 38.462 0.00 0.00 37.65 3.07
1900 2341 7.825331 ACATTAAGATGAGGATCTAACTCGA 57.175 36.000 0.00 0.00 38.03 4.04
1952 2400 6.858993 TCAAAACATCAAAATGTAACTACGGC 59.141 34.615 0.00 0.00 45.48 5.68
1957 2405 4.901868 TCAAAATGTAACTACGGCCTCTT 58.098 39.130 0.00 0.00 0.00 2.85
2005 2453 6.869206 ATACCTCTGTACCACAATACTTGT 57.131 37.500 0.00 0.00 46.75 3.16
2006 2454 5.562298 ACCTCTGTACCACAATACTTGTT 57.438 39.130 0.00 0.00 43.23 2.83
2007 2455 5.305585 ACCTCTGTACCACAATACTTGTTG 58.694 41.667 0.00 0.00 43.23 3.33
2008 2456 5.163237 ACCTCTGTACCACAATACTTGTTGT 60.163 40.000 2.82 2.82 43.23 3.32
2009 2457 5.763204 CCTCTGTACCACAATACTTGTTGTT 59.237 40.000 2.59 0.00 43.23 2.83
2010 2458 6.293407 CCTCTGTACCACAATACTTGTTGTTG 60.293 42.308 2.59 0.00 43.23 3.33
2011 2459 5.529430 TCTGTACCACAATACTTGTTGTTGG 59.471 40.000 2.59 0.00 43.23 3.77
2012 2460 4.580995 TGTACCACAATACTTGTTGTTGGG 59.419 41.667 2.59 0.00 43.23 4.12
2013 2461 3.658757 CCACAATACTTGTTGTTGGGG 57.341 47.619 5.79 5.79 42.93 4.96
2014 2462 2.298729 CCACAATACTTGTTGTTGGGGG 59.701 50.000 10.22 5.31 44.41 5.40
2015 2463 3.226777 CACAATACTTGTTGTTGGGGGA 58.773 45.455 0.00 0.00 43.23 4.81
2016 2464 3.639094 CACAATACTTGTTGTTGGGGGAA 59.361 43.478 0.00 0.00 43.23 3.97
2017 2465 3.639561 ACAATACTTGTTGTTGGGGGAAC 59.360 43.478 0.00 0.00 42.22 3.62
2018 2466 3.895041 CAATACTTGTTGTTGGGGGAACT 59.105 43.478 0.00 0.00 35.37 3.01
2019 2467 2.543037 ACTTGTTGTTGGGGGAACTT 57.457 45.000 0.00 0.00 35.37 2.66
2020 2468 2.827755 ACTTGTTGTTGGGGGAACTTT 58.172 42.857 0.00 0.00 35.37 2.66
2021 2469 3.178046 ACTTGTTGTTGGGGGAACTTTT 58.822 40.909 0.00 0.00 35.37 2.27
2022 2470 4.354662 ACTTGTTGTTGGGGGAACTTTTA 58.645 39.130 0.00 0.00 35.37 1.52
2023 2471 4.160814 ACTTGTTGTTGGGGGAACTTTTAC 59.839 41.667 0.00 0.00 35.37 2.01
2024 2472 3.983821 TGTTGTTGGGGGAACTTTTACT 58.016 40.909 0.00 0.00 35.37 2.24
2025 2473 5.126699 TGTTGTTGGGGGAACTTTTACTA 57.873 39.130 0.00 0.00 35.37 1.82
2026 2474 5.134661 TGTTGTTGGGGGAACTTTTACTAG 58.865 41.667 0.00 0.00 35.37 2.57
2027 2475 5.135383 GTTGTTGGGGGAACTTTTACTAGT 58.865 41.667 0.00 0.00 35.37 2.57
2028 2476 5.391577 TGTTGGGGGAACTTTTACTAGTT 57.608 39.130 0.00 0.00 40.92 2.24
2029 2477 5.768752 TGTTGGGGGAACTTTTACTAGTTT 58.231 37.500 0.00 0.00 38.43 2.66
2030 2478 6.196434 TGTTGGGGGAACTTTTACTAGTTTT 58.804 36.000 0.00 0.00 38.43 2.43
2031 2479 6.321945 TGTTGGGGGAACTTTTACTAGTTTTC 59.678 38.462 0.00 0.00 38.43 2.29
2032 2480 5.387788 TGGGGGAACTTTTACTAGTTTTCC 58.612 41.667 0.00 6.09 38.43 3.13
2033 2481 4.768968 GGGGGAACTTTTACTAGTTTTCCC 59.231 45.833 20.39 20.39 43.56 3.97
2034 2482 5.972107 GGGAACTTTTACTAGTTTTCCCC 57.028 43.478 19.02 10.88 38.48 4.81
2035 2483 5.387788 GGGAACTTTTACTAGTTTTCCCCA 58.612 41.667 19.02 0.00 38.48 4.96
2036 2484 5.834742 GGGAACTTTTACTAGTTTTCCCCAA 59.165 40.000 19.02 0.00 38.48 4.12
2037 2485 6.239120 GGGAACTTTTACTAGTTTTCCCCAAC 60.239 42.308 19.02 0.00 38.48 3.77
2038 2486 6.548622 GGAACTTTTACTAGTTTTCCCCAACT 59.451 38.462 0.00 0.00 38.43 3.16
2039 2487 7.720957 GGAACTTTTACTAGTTTTCCCCAACTA 59.279 37.037 0.00 0.00 38.43 2.24
2040 2488 8.455903 AACTTTTACTAGTTTTCCCCAACTAC 57.544 34.615 0.00 0.00 38.07 2.73
2041 2489 7.576403 ACTTTTACTAGTTTTCCCCAACTACA 58.424 34.615 0.00 0.00 38.07 2.74
2042 2490 8.054572 ACTTTTACTAGTTTTCCCCAACTACAA 58.945 33.333 0.00 0.00 38.07 2.41
2043 2491 8.454570 TTTTACTAGTTTTCCCCAACTACAAG 57.545 34.615 0.00 0.00 38.07 3.16
2044 2492 5.641789 ACTAGTTTTCCCCAACTACAAGT 57.358 39.130 0.00 0.00 38.07 3.16
2045 2493 6.752285 ACTAGTTTTCCCCAACTACAAGTA 57.248 37.500 0.00 0.00 38.07 2.24
2046 2494 7.325725 ACTAGTTTTCCCCAACTACAAGTAT 57.674 36.000 0.00 0.00 38.07 2.12
2047 2495 7.752638 ACTAGTTTTCCCCAACTACAAGTATT 58.247 34.615 0.00 0.00 38.07 1.89
2048 2496 8.222637 ACTAGTTTTCCCCAACTACAAGTATTT 58.777 33.333 0.00 0.00 38.07 1.40
2049 2497 7.520451 AGTTTTCCCCAACTACAAGTATTTC 57.480 36.000 0.00 0.00 35.10 2.17
2050 2498 6.206048 AGTTTTCCCCAACTACAAGTATTTCG 59.794 38.462 0.00 0.00 35.10 3.46
2051 2499 4.895668 TCCCCAACTACAAGTATTTCGT 57.104 40.909 0.00 0.00 0.00 3.85
2052 2500 5.231702 TCCCCAACTACAAGTATTTCGTT 57.768 39.130 0.00 0.00 0.00 3.85
2053 2501 6.357579 TCCCCAACTACAAGTATTTCGTTA 57.642 37.500 0.00 0.00 0.00 3.18
2054 2502 6.165577 TCCCCAACTACAAGTATTTCGTTAC 58.834 40.000 0.00 0.00 0.00 2.50
2055 2503 5.933463 CCCCAACTACAAGTATTTCGTTACA 59.067 40.000 0.00 0.00 0.00 2.41
2056 2504 6.091713 CCCCAACTACAAGTATTTCGTTACAG 59.908 42.308 0.00 0.00 0.00 2.74
2057 2505 6.869913 CCCAACTACAAGTATTTCGTTACAGA 59.130 38.462 0.00 0.00 0.00 3.41
2058 2506 7.063074 CCCAACTACAAGTATTTCGTTACAGAG 59.937 40.741 0.00 0.00 0.00 3.35
2059 2507 7.063074 CCAACTACAAGTATTTCGTTACAGAGG 59.937 40.741 0.00 0.00 0.00 3.69
2060 2508 6.628185 ACTACAAGTATTTCGTTACAGAGGG 58.372 40.000 0.00 0.00 0.00 4.30
2061 2509 5.733620 ACAAGTATTTCGTTACAGAGGGA 57.266 39.130 0.00 0.00 0.00 4.20
2062 2510 5.721232 ACAAGTATTTCGTTACAGAGGGAG 58.279 41.667 0.00 0.00 0.00 4.30
2063 2511 5.245526 ACAAGTATTTCGTTACAGAGGGAGT 59.754 40.000 0.00 0.00 0.00 3.85
2064 2512 6.435277 ACAAGTATTTCGTTACAGAGGGAGTA 59.565 38.462 0.00 0.00 0.00 2.59
2068 2516 5.733620 TTTCGTTACAGAGGGAGTACAAT 57.266 39.130 0.00 0.00 0.00 2.71
2077 2525 7.826918 ACAGAGGGAGTACAATATTAGACTC 57.173 40.000 15.78 15.78 38.06 3.36
2198 2647 6.728164 ACTGTCATGGGCTAGATATTGTAGAT 59.272 38.462 0.00 0.00 0.00 1.98
2199 2648 7.895962 ACTGTCATGGGCTAGATATTGTAGATA 59.104 37.037 0.00 0.00 0.00 1.98
2275 2762 2.705658 TGGGTGACTTCTGAATGTGTCT 59.294 45.455 8.96 0.00 0.00 3.41
2319 2810 7.148340 GCTCTTTGTGTTTAGAAGCTGTATCAT 60.148 37.037 0.00 0.00 0.00 2.45
2365 2856 5.108065 CGATGATGAAAGCTCGTATCTGAAC 60.108 44.000 0.00 0.00 0.00 3.18
2367 2858 5.478407 TGATGAAAGCTCGTATCTGAACAA 58.522 37.500 0.00 0.00 0.00 2.83
2391 2883 8.425491 CAAACAGTAGTGAACTATTAGTTGACG 58.575 37.037 16.96 8.26 45.09 4.35
2420 2912 4.406456 AGTTGCACATTGTGGATTCCTTA 58.594 39.130 18.05 0.00 33.22 2.69
2451 2943 8.637986 GGTGATTTTAGATAGATCTCACTCACT 58.362 37.037 0.00 0.00 38.32 3.41
2493 2985 3.173965 ACCTACCTGCAATACACTCTGT 58.826 45.455 0.00 0.00 0.00 3.41
2761 3255 5.235305 TGAAGAAAGTTGTTCTTGCTGAC 57.765 39.130 6.08 0.00 40.92 3.51
2857 3351 1.002624 CACCACATACAAGGGCCGT 60.003 57.895 0.00 0.00 0.00 5.68
2968 3462 0.759346 CCTCCTTATCCTCAACCCCG 59.241 60.000 0.00 0.00 0.00 5.73
3055 3549 2.285773 TGCGATCCCTGCTGTCACT 61.286 57.895 0.00 0.00 0.00 3.41
3115 3609 5.239351 CCCTTTTTGTCATTGAATGCATCA 58.761 37.500 0.00 0.00 35.85 3.07
3172 3666 2.304221 AGGTTTTGGGTAAGAAGGCC 57.696 50.000 0.00 0.00 0.00 5.19
3292 3786 2.486548 GGTGAACTGGTCTAACTTGCCA 60.487 50.000 0.00 0.00 0.00 4.92
3300 3794 2.354203 GGTCTAACTTGCCAGAGTGGAG 60.354 54.545 0.00 0.00 40.96 3.86
3433 3927 1.253593 TGTCCGAGAGCATGCTCACT 61.254 55.000 40.91 26.66 44.99 3.41
3558 4054 2.250921 TGGGATGGATGTGGCAAAAT 57.749 45.000 0.00 0.00 0.00 1.82
3569 4065 5.807011 GGATGTGGCAAAATGTACTGATTTC 59.193 40.000 0.00 0.00 0.00 2.17
3572 4068 4.622740 GTGGCAAAATGTACTGATTTCTGC 59.377 41.667 0.00 12.33 33.40 4.26
3574 4070 3.853671 GCAAAATGTACTGATTTCTGCGG 59.146 43.478 0.00 0.00 0.00 5.69
3590 4086 3.007074 TCTGCGGTAACATGGAACTTGTA 59.993 43.478 0.00 0.00 0.00 2.41
3592 4088 3.687212 TGCGGTAACATGGAACTTGTATG 59.313 43.478 0.00 0.00 0.00 2.39
3593 4089 3.687698 GCGGTAACATGGAACTTGTATGT 59.312 43.478 0.00 0.00 36.66 2.29
3594 4090 4.155280 GCGGTAACATGGAACTTGTATGTT 59.845 41.667 0.00 0.00 44.54 2.71
3595 4091 5.352016 GCGGTAACATGGAACTTGTATGTTA 59.648 40.000 0.00 0.00 42.90 2.41
3617 4113 8.673711 TGTTATACTGGCTAGCTTTGTAAATTG 58.326 33.333 15.72 0.00 0.00 2.32
3624 4120 1.682867 GCTTTGTAAATTGCGGGCGC 61.683 55.000 0.00 0.00 42.35 6.53
3626 4122 1.853114 TTTGTAAATTGCGGGCGCGA 61.853 50.000 28.66 7.27 45.51 5.87
3627 4123 1.853114 TTGTAAATTGCGGGCGCGAA 61.853 50.000 28.66 15.17 45.51 4.70
3658 4154 3.365666 CCTTACAGTGAAGTGCAGCAATG 60.366 47.826 0.00 9.25 36.30 2.82
3700 4196 3.637998 ACACATCTCAAAGCAAAGCAG 57.362 42.857 0.00 0.00 0.00 4.24
3716 4212 1.858091 GCAGAAGCGCTTAGAGCATA 58.142 50.000 25.11 0.00 42.58 3.14
3719 4215 3.860378 GCAGAAGCGCTTAGAGCATATCT 60.860 47.826 25.11 9.84 42.58 1.98
3723 4219 3.088532 AGCGCTTAGAGCATATCTAGCT 58.911 45.455 2.64 0.00 46.82 3.32
3733 4229 1.701847 CATATCTAGCTGTTGGCCCCT 59.298 52.381 0.00 0.00 43.05 4.79
4230 4816 2.358369 TCGTCGTCGAGCTCCACT 60.358 61.111 8.47 0.00 41.35 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 220 4.358841 TGGTCATTGTGGCGGGGG 62.359 66.667 0.00 0.00 0.00 5.40
274 303 0.535102 CTTTCTGGGTCACAAGCGGT 60.535 55.000 0.00 0.00 0.00 5.68
439 510 2.617532 GCCCTGAGAACTGAAGCTTCAT 60.618 50.000 28.57 15.83 36.46 2.57
488 559 0.748450 TAGGTCTAAATGGTCGCCGG 59.252 55.000 0.00 0.00 0.00 6.13
553 624 8.309163 ACAAGTACGGATTTCATTTAAACGTA 57.691 30.769 0.00 0.00 34.69 3.57
555 626 7.799447 TGAACAAGTACGGATTTCATTTAAACG 59.201 33.333 0.00 0.00 0.00 3.60
572 643 6.367421 CGGACGAAATTCATTTGAACAAGTA 58.633 36.000 0.00 0.00 36.80 2.24
580 651 4.742659 ACAAAACCGGACGAAATTCATTTG 59.257 37.500 9.46 6.06 0.00 2.32
600 671 0.969149 ACACAGATGCGAGAGGACAA 59.031 50.000 0.00 0.00 0.00 3.18
601 672 0.969149 AACACAGATGCGAGAGGACA 59.031 50.000 0.00 0.00 0.00 4.02
602 673 1.067565 TGAACACAGATGCGAGAGGAC 60.068 52.381 0.00 0.00 0.00 3.85
603 674 1.067565 GTGAACACAGATGCGAGAGGA 60.068 52.381 0.00 0.00 0.00 3.71
604 675 1.354040 GTGAACACAGATGCGAGAGG 58.646 55.000 0.00 0.00 0.00 3.69
605 676 0.987715 CGTGAACACAGATGCGAGAG 59.012 55.000 5.80 0.00 0.00 3.20
606 677 0.596082 TCGTGAACACAGATGCGAGA 59.404 50.000 5.80 0.00 0.00 4.04
607 678 1.125021 GTTCGTGAACACAGATGCGAG 59.875 52.381 7.83 0.00 40.84 5.03
608 679 1.136690 GTTCGTGAACACAGATGCGA 58.863 50.000 7.83 0.00 40.84 5.10
609 680 1.136529 CAGTTCGTGAACACAGATGCG 60.137 52.381 14.61 0.00 43.47 4.73
610 681 2.135139 TCAGTTCGTGAACACAGATGC 58.865 47.619 14.61 0.00 43.47 3.91
611 682 4.448732 TGAATCAGTTCGTGAACACAGATG 59.551 41.667 14.61 4.41 43.47 2.90
612 683 4.631131 TGAATCAGTTCGTGAACACAGAT 58.369 39.130 14.61 11.13 43.47 2.90
613 684 4.053469 TGAATCAGTTCGTGAACACAGA 57.947 40.909 14.61 9.53 43.47 3.41
614 685 4.997905 ATGAATCAGTTCGTGAACACAG 57.002 40.909 14.61 4.86 43.47 3.66
615 686 5.749596 AAATGAATCAGTTCGTGAACACA 57.250 34.783 14.61 7.12 43.47 3.72
616 687 7.518161 TGATAAATGAATCAGTTCGTGAACAC 58.482 34.615 14.61 0.00 43.47 3.32
617 688 7.665561 TGATAAATGAATCAGTTCGTGAACA 57.334 32.000 14.61 0.00 43.47 3.18
618 689 8.015087 TGTTGATAAATGAATCAGTTCGTGAAC 58.985 33.333 0.00 4.58 39.19 3.18
619 690 8.093659 TGTTGATAAATGAATCAGTTCGTGAA 57.906 30.769 0.00 0.00 39.19 3.18
620 691 7.602265 TCTGTTGATAAATGAATCAGTTCGTGA 59.398 33.333 0.00 0.00 37.20 4.35
621 692 7.742151 TCTGTTGATAAATGAATCAGTTCGTG 58.258 34.615 0.00 0.00 37.20 4.35
622 693 7.065085 CCTCTGTTGATAAATGAATCAGTTCGT 59.935 37.037 0.00 0.00 37.20 3.85
623 694 7.404985 CCTCTGTTGATAAATGAATCAGTTCG 58.595 38.462 0.00 0.00 37.20 3.95
624 695 7.554118 TCCCTCTGTTGATAAATGAATCAGTTC 59.446 37.037 0.00 0.00 37.20 3.01
625 696 7.405292 TCCCTCTGTTGATAAATGAATCAGTT 58.595 34.615 0.61 0.61 37.20 3.16
626 697 6.962182 TCCCTCTGTTGATAAATGAATCAGT 58.038 36.000 0.00 0.00 37.20 3.41
627 698 7.521748 GCATCCCTCTGTTGATAAATGAATCAG 60.522 40.741 0.00 0.00 37.20 2.90
628 699 6.263842 GCATCCCTCTGTTGATAAATGAATCA 59.736 38.462 0.00 0.00 34.07 2.57
629 700 6.567321 CGCATCCCTCTGTTGATAAATGAATC 60.567 42.308 0.00 0.00 0.00 2.52
630 701 5.240183 CGCATCCCTCTGTTGATAAATGAAT 59.760 40.000 0.00 0.00 0.00 2.57
631 702 4.576053 CGCATCCCTCTGTTGATAAATGAA 59.424 41.667 0.00 0.00 0.00 2.57
632 703 4.129380 CGCATCCCTCTGTTGATAAATGA 58.871 43.478 0.00 0.00 0.00 2.57
633 704 3.251729 CCGCATCCCTCTGTTGATAAATG 59.748 47.826 0.00 0.00 0.00 2.32
634 705 3.480470 CCGCATCCCTCTGTTGATAAAT 58.520 45.455 0.00 0.00 0.00 1.40
635 706 2.421388 CCCGCATCCCTCTGTTGATAAA 60.421 50.000 0.00 0.00 0.00 1.40
636 707 1.140852 CCCGCATCCCTCTGTTGATAA 59.859 52.381 0.00 0.00 0.00 1.75
637 708 0.758734 CCCGCATCCCTCTGTTGATA 59.241 55.000 0.00 0.00 0.00 2.15
638 709 0.982852 TCCCGCATCCCTCTGTTGAT 60.983 55.000 0.00 0.00 0.00 2.57
639 710 1.612146 TCCCGCATCCCTCTGTTGA 60.612 57.895 0.00 0.00 0.00 3.18
640 711 1.153289 CTCCCGCATCCCTCTGTTG 60.153 63.158 0.00 0.00 0.00 3.33
641 712 2.370445 CCTCCCGCATCCCTCTGTT 61.370 63.158 0.00 0.00 0.00 3.16
642 713 2.765807 CCTCCCGCATCCCTCTGT 60.766 66.667 0.00 0.00 0.00 3.41
643 714 1.626356 TTTCCTCCCGCATCCCTCTG 61.626 60.000 0.00 0.00 0.00 3.35
644 715 0.695803 ATTTCCTCCCGCATCCCTCT 60.696 55.000 0.00 0.00 0.00 3.69
645 716 0.183731 AATTTCCTCCCGCATCCCTC 59.816 55.000 0.00 0.00 0.00 4.30
646 717 0.631212 AAATTTCCTCCCGCATCCCT 59.369 50.000 0.00 0.00 0.00 4.20
647 718 0.746659 CAAATTTCCTCCCGCATCCC 59.253 55.000 0.00 0.00 0.00 3.85
648 719 0.103026 GCAAATTTCCTCCCGCATCC 59.897 55.000 0.00 0.00 0.00 3.51
649 720 0.248621 CGCAAATTTCCTCCCGCATC 60.249 55.000 0.00 0.00 0.00 3.91
650 721 1.666209 CCGCAAATTTCCTCCCGCAT 61.666 55.000 0.00 0.00 0.00 4.73
651 722 2.339556 CCGCAAATTTCCTCCCGCA 61.340 57.895 0.00 0.00 0.00 5.69
652 723 2.489751 CCGCAAATTTCCTCCCGC 59.510 61.111 0.00 0.00 0.00 6.13
653 724 1.248101 AACCCGCAAATTTCCTCCCG 61.248 55.000 0.00 0.00 0.00 5.14
654 725 0.246360 CAACCCGCAAATTTCCTCCC 59.754 55.000 0.00 0.00 0.00 4.30
655 726 0.389817 GCAACCCGCAAATTTCCTCC 60.390 55.000 0.00 0.00 41.79 4.30
656 727 3.122150 GCAACCCGCAAATTTCCTC 57.878 52.632 0.00 0.00 41.79 3.71
666 737 1.675641 ATCTCCAACTGCAACCCGC 60.676 57.895 0.00 0.00 42.89 6.13
667 738 0.606401 ACATCTCCAACTGCAACCCG 60.606 55.000 0.00 0.00 0.00 5.28
668 739 1.168714 GACATCTCCAACTGCAACCC 58.831 55.000 0.00 0.00 0.00 4.11
669 740 1.808945 CAGACATCTCCAACTGCAACC 59.191 52.381 0.00 0.00 0.00 3.77
670 741 1.808945 CCAGACATCTCCAACTGCAAC 59.191 52.381 0.00 0.00 0.00 4.17
671 742 1.421268 ACCAGACATCTCCAACTGCAA 59.579 47.619 0.00 0.00 0.00 4.08
672 743 1.002430 GACCAGACATCTCCAACTGCA 59.998 52.381 0.00 0.00 0.00 4.41
673 744 1.677217 GGACCAGACATCTCCAACTGC 60.677 57.143 0.00 0.00 0.00 4.40
674 745 1.404717 CGGACCAGACATCTCCAACTG 60.405 57.143 0.00 0.00 0.00 3.16
675 746 0.898320 CGGACCAGACATCTCCAACT 59.102 55.000 0.00 0.00 0.00 3.16
676 747 0.608640 ACGGACCAGACATCTCCAAC 59.391 55.000 0.00 0.00 0.00 3.77
677 748 0.608130 CACGGACCAGACATCTCCAA 59.392 55.000 0.00 0.00 0.00 3.53
678 749 1.257750 CCACGGACCAGACATCTCCA 61.258 60.000 0.00 0.00 0.00 3.86
679 750 0.970937 TCCACGGACCAGACATCTCC 60.971 60.000 0.00 0.00 0.00 3.71
680 751 0.895530 TTCCACGGACCAGACATCTC 59.104 55.000 0.00 0.00 0.00 2.75
681 752 1.348064 TTTCCACGGACCAGACATCT 58.652 50.000 0.00 0.00 0.00 2.90
682 753 2.178912 TTTTCCACGGACCAGACATC 57.821 50.000 0.00 0.00 0.00 3.06
683 754 2.649531 TTTTTCCACGGACCAGACAT 57.350 45.000 0.00 0.00 0.00 3.06
875 946 0.172803 GCTCGGGCGGTATGTATAGG 59.827 60.000 0.00 0.00 0.00 2.57
912 983 4.262765 GGGGAGAAAAGAAACGGAACTCTA 60.263 45.833 0.00 0.00 0.00 2.43
960 1031 4.243270 CCTATCAATTCGACCGGATTACC 58.757 47.826 9.46 0.00 0.00 2.85
1132 1203 1.405243 TTAGAAGGGAGGGAGGGAGT 58.595 55.000 0.00 0.00 0.00 3.85
1136 1207 3.142028 AGAGAGATTAGAAGGGAGGGAGG 59.858 52.174 0.00 0.00 0.00 4.30
1138 1209 4.551671 CAAGAGAGATTAGAAGGGAGGGA 58.448 47.826 0.00 0.00 0.00 4.20
1140 1211 3.070878 GGCAAGAGAGATTAGAAGGGAGG 59.929 52.174 0.00 0.00 0.00 4.30
1141 1212 3.708631 TGGCAAGAGAGATTAGAAGGGAG 59.291 47.826 0.00 0.00 0.00 4.30
1142 1213 3.452627 GTGGCAAGAGAGATTAGAAGGGA 59.547 47.826 0.00 0.00 0.00 4.20
1143 1214 3.739519 CGTGGCAAGAGAGATTAGAAGGG 60.740 52.174 0.00 0.00 0.00 3.95
1144 1215 3.452474 CGTGGCAAGAGAGATTAGAAGG 58.548 50.000 0.00 0.00 0.00 3.46
1145 1216 3.452474 CCGTGGCAAGAGAGATTAGAAG 58.548 50.000 0.76 0.00 0.00 2.85
1146 1217 2.418746 GCCGTGGCAAGAGAGATTAGAA 60.419 50.000 5.89 0.00 41.49 2.10
1147 1218 1.137086 GCCGTGGCAAGAGAGATTAGA 59.863 52.381 5.89 0.00 41.49 2.10
1148 1219 1.137872 AGCCGTGGCAAGAGAGATTAG 59.862 52.381 14.29 0.00 44.88 1.73
1152 1223 2.973899 GAGCCGTGGCAAGAGAGA 59.026 61.111 14.29 0.00 44.88 3.10
1172 1243 4.271816 CCCGTCAGCTCCGATCGG 62.272 72.222 28.62 28.62 40.72 4.18
1464 1882 1.972198 CAGTGTGGGGTCGAAGCTA 59.028 57.895 0.00 0.00 0.00 3.32
1515 1933 2.443952 TCGCCGTCCTGGATCCAT 60.444 61.111 16.63 0.00 42.00 3.41
1593 2012 9.232473 GTCTAAGTCTGAACCAATCCTTAAAAT 57.768 33.333 0.00 0.00 0.00 1.82
1594 2013 8.437575 AGTCTAAGTCTGAACCAATCCTTAAAA 58.562 33.333 0.00 0.00 0.00 1.52
1595 2014 7.974504 AGTCTAAGTCTGAACCAATCCTTAAA 58.025 34.615 0.00 0.00 0.00 1.52
1596 2015 7.554959 AGTCTAAGTCTGAACCAATCCTTAA 57.445 36.000 0.00 0.00 0.00 1.85
1597 2016 7.234782 TCAAGTCTAAGTCTGAACCAATCCTTA 59.765 37.037 0.00 0.00 0.00 2.69
1598 2017 6.043243 TCAAGTCTAAGTCTGAACCAATCCTT 59.957 38.462 0.00 0.00 0.00 3.36
1599 2018 5.544176 TCAAGTCTAAGTCTGAACCAATCCT 59.456 40.000 0.00 0.00 0.00 3.24
1600 2019 5.794894 TCAAGTCTAAGTCTGAACCAATCC 58.205 41.667 0.00 0.00 0.00 3.01
1601 2020 6.692486 TCTCAAGTCTAAGTCTGAACCAATC 58.308 40.000 0.00 0.00 0.00 2.67
1602 2021 6.268847 ACTCTCAAGTCTAAGTCTGAACCAAT 59.731 38.462 0.00 0.00 0.00 3.16
1603 2022 5.598830 ACTCTCAAGTCTAAGTCTGAACCAA 59.401 40.000 0.00 0.00 0.00 3.67
1604 2023 5.141182 ACTCTCAAGTCTAAGTCTGAACCA 58.859 41.667 0.00 0.00 0.00 3.67
1605 2024 5.715434 ACTCTCAAGTCTAAGTCTGAACC 57.285 43.478 0.00 0.00 0.00 3.62
1606 2025 6.419413 CACAACTCTCAAGTCTAAGTCTGAAC 59.581 42.308 0.00 0.00 33.48 3.18
1607 2026 6.461648 CCACAACTCTCAAGTCTAAGTCTGAA 60.462 42.308 0.00 0.00 33.48 3.02
1608 2027 5.010112 CCACAACTCTCAAGTCTAAGTCTGA 59.990 44.000 0.00 0.00 33.48 3.27
1609 2028 5.226396 CCACAACTCTCAAGTCTAAGTCTG 58.774 45.833 0.00 0.00 33.48 3.51
1610 2029 4.282195 CCCACAACTCTCAAGTCTAAGTCT 59.718 45.833 0.00 0.00 33.48 3.24
1611 2030 4.039366 ACCCACAACTCTCAAGTCTAAGTC 59.961 45.833 0.00 0.00 33.48 3.01
1612 2031 3.967987 ACCCACAACTCTCAAGTCTAAGT 59.032 43.478 0.00 0.00 33.48 2.24
1613 2032 4.608948 ACCCACAACTCTCAAGTCTAAG 57.391 45.455 0.00 0.00 33.48 2.18
1614 2033 4.163458 ACAACCCACAACTCTCAAGTCTAA 59.837 41.667 0.00 0.00 33.48 2.10
1615 2034 3.709653 ACAACCCACAACTCTCAAGTCTA 59.290 43.478 0.00 0.00 33.48 2.59
1616 2035 2.505819 ACAACCCACAACTCTCAAGTCT 59.494 45.455 0.00 0.00 33.48 3.24
1617 2036 2.919228 ACAACCCACAACTCTCAAGTC 58.081 47.619 0.00 0.00 33.48 3.01
1618 2037 3.016736 CAACAACCCACAACTCTCAAGT 58.983 45.455 0.00 0.00 37.32 3.16
1619 2038 3.278574 TCAACAACCCACAACTCTCAAG 58.721 45.455 0.00 0.00 0.00 3.02
1620 2039 3.358111 TCAACAACCCACAACTCTCAA 57.642 42.857 0.00 0.00 0.00 3.02
1621 2040 3.576078 ATCAACAACCCACAACTCTCA 57.424 42.857 0.00 0.00 0.00 3.27
1622 2041 7.275920 AGATATATCAACAACCCACAACTCTC 58.724 38.462 15.08 0.00 0.00 3.20
1623 2042 7.200434 AGATATATCAACAACCCACAACTCT 57.800 36.000 15.08 0.00 0.00 3.24
1624 2043 7.865706 AAGATATATCAACAACCCACAACTC 57.134 36.000 15.08 0.00 0.00 3.01
1625 2044 9.396022 CTTAAGATATATCAACAACCCACAACT 57.604 33.333 15.08 0.00 0.00 3.16
1626 2045 8.621286 CCTTAAGATATATCAACAACCCACAAC 58.379 37.037 15.08 0.00 0.00 3.32
1627 2046 8.333235 ACCTTAAGATATATCAACAACCCACAA 58.667 33.333 15.08 0.00 0.00 3.33
1628 2047 7.867921 ACCTTAAGATATATCAACAACCCACA 58.132 34.615 15.08 0.00 0.00 4.17
1629 2048 8.621286 CAACCTTAAGATATATCAACAACCCAC 58.379 37.037 15.08 0.00 0.00 4.61
1630 2049 7.777910 CCAACCTTAAGATATATCAACAACCCA 59.222 37.037 15.08 0.00 0.00 4.51
1631 2050 7.778382 ACCAACCTTAAGATATATCAACAACCC 59.222 37.037 15.08 0.00 0.00 4.11
1632 2051 8.747538 ACCAACCTTAAGATATATCAACAACC 57.252 34.615 15.08 0.00 0.00 3.77
1634 2053 9.967451 TCAACCAACCTTAAGATATATCAACAA 57.033 29.630 15.08 4.83 0.00 2.83
1635 2054 9.613428 CTCAACCAACCTTAAGATATATCAACA 57.387 33.333 15.08 0.00 0.00 3.33
1636 2055 9.832445 TCTCAACCAACCTTAAGATATATCAAC 57.168 33.333 15.08 0.00 0.00 3.18
1638 2057 9.213777 ACTCTCAACCAACCTTAAGATATATCA 57.786 33.333 15.08 0.00 0.00 2.15
1640 2059 9.838339 CAACTCTCAACCAACCTTAAGATATAT 57.162 33.333 3.36 0.00 0.00 0.86
1641 2060 8.822805 ACAACTCTCAACCAACCTTAAGATATA 58.177 33.333 3.36 0.00 0.00 0.86
1642 2061 7.607991 CACAACTCTCAACCAACCTTAAGATAT 59.392 37.037 3.36 0.00 0.00 1.63
1643 2062 6.934645 CACAACTCTCAACCAACCTTAAGATA 59.065 38.462 3.36 0.00 0.00 1.98
1667 2086 4.021544 GCAAGGAAACCATATCAACAACCA 60.022 41.667 0.00 0.00 0.00 3.67
1781 2217 1.215423 TCCCCATCTCGATGTCTGAGA 59.785 52.381 6.20 0.00 45.84 3.27
1782 2218 1.697284 TCCCCATCTCGATGTCTGAG 58.303 55.000 6.20 0.00 37.11 3.35
1783 2219 2.366590 CAATCCCCATCTCGATGTCTGA 59.633 50.000 6.20 0.76 37.11 3.27
1784 2220 2.549563 CCAATCCCCATCTCGATGTCTG 60.550 54.545 6.20 0.00 37.11 3.51
1785 2221 1.696336 CCAATCCCCATCTCGATGTCT 59.304 52.381 6.20 0.00 37.11 3.41
1789 2225 0.681733 CGTCCAATCCCCATCTCGAT 59.318 55.000 0.00 0.00 0.00 3.59
1792 2228 0.394565 CCTCGTCCAATCCCCATCTC 59.605 60.000 0.00 0.00 0.00 2.75
1802 2238 1.203052 CTAACGCCTAACCTCGTCCAA 59.797 52.381 0.00 0.00 38.03 3.53
1817 2253 1.346722 ACCTTTCCCCTGTCACTAACG 59.653 52.381 0.00 0.00 0.00 3.18
1887 2328 3.955524 TTCTCCCTCGAGTTAGATCCT 57.044 47.619 12.31 0.00 37.40 3.24
1952 2400 3.879295 TCTTCTTTTGTGTGCAGAAGAGG 59.121 43.478 7.91 4.57 44.92 3.69
1996 2444 3.895041 AGTTCCCCCAACAACAAGTATTG 59.105 43.478 0.00 0.00 44.57 1.90
1997 2445 4.193240 AGTTCCCCCAACAACAAGTATT 57.807 40.909 0.00 0.00 37.48 1.89
1998 2446 3.895704 AGTTCCCCCAACAACAAGTAT 57.104 42.857 0.00 0.00 37.48 2.12
1999 2447 3.673543 AAGTTCCCCCAACAACAAGTA 57.326 42.857 0.00 0.00 37.48 2.24
2000 2448 2.543037 AAGTTCCCCCAACAACAAGT 57.457 45.000 0.00 0.00 37.48 3.16
2001 2449 3.904800 AAAAGTTCCCCCAACAACAAG 57.095 42.857 0.00 0.00 37.48 3.16
2002 2450 4.354662 AGTAAAAGTTCCCCCAACAACAA 58.645 39.130 0.00 0.00 37.48 2.83
2003 2451 3.983821 AGTAAAAGTTCCCCCAACAACA 58.016 40.909 0.00 0.00 37.48 3.33
2004 2452 5.135383 ACTAGTAAAAGTTCCCCCAACAAC 58.865 41.667 0.00 0.00 37.48 3.32
2005 2453 5.391577 ACTAGTAAAAGTTCCCCCAACAA 57.608 39.130 0.00 0.00 37.48 2.83
2006 2454 5.391577 AACTAGTAAAAGTTCCCCCAACA 57.608 39.130 0.00 0.00 34.60 3.33
2007 2455 6.239120 GGAAAACTAGTAAAAGTTCCCCCAAC 60.239 42.308 0.00 0.00 38.76 3.77
2008 2456 5.834742 GGAAAACTAGTAAAAGTTCCCCCAA 59.165 40.000 0.00 0.00 38.76 4.12
2009 2457 5.387788 GGAAAACTAGTAAAAGTTCCCCCA 58.612 41.667 0.00 0.00 38.76 4.96
2010 2458 4.768968 GGGAAAACTAGTAAAAGTTCCCCC 59.231 45.833 20.38 11.59 41.62 5.40
2011 2459 5.972107 GGGAAAACTAGTAAAAGTTCCCC 57.028 43.478 20.38 6.44 39.32 4.81
2012 2460 5.387788 TGGGGAAAACTAGTAAAAGTTCCC 58.612 41.667 21.71 21.71 42.40 3.97
2013 2461 6.548622 AGTTGGGGAAAACTAGTAAAAGTTCC 59.451 38.462 0.00 4.90 38.76 3.62
2014 2462 7.578310 AGTTGGGGAAAACTAGTAAAAGTTC 57.422 36.000 0.00 0.00 38.76 3.01
2015 2463 8.054572 TGTAGTTGGGGAAAACTAGTAAAAGTT 58.945 33.333 0.00 0.00 41.97 2.66
2016 2464 7.576403 TGTAGTTGGGGAAAACTAGTAAAAGT 58.424 34.615 0.00 0.00 41.97 2.66
2017 2465 8.454570 TTGTAGTTGGGGAAAACTAGTAAAAG 57.545 34.615 0.00 0.00 41.97 2.27
2018 2466 8.054572 ACTTGTAGTTGGGGAAAACTAGTAAAA 58.945 33.333 0.00 0.00 41.97 1.52
2019 2467 7.576403 ACTTGTAGTTGGGGAAAACTAGTAAA 58.424 34.615 0.00 0.00 41.97 2.01
2020 2468 7.140522 ACTTGTAGTTGGGGAAAACTAGTAA 57.859 36.000 0.00 0.00 41.97 2.24
2021 2469 6.752285 ACTTGTAGTTGGGGAAAACTAGTA 57.248 37.500 0.00 0.00 41.97 1.82
2022 2470 5.641789 ACTTGTAGTTGGGGAAAACTAGT 57.358 39.130 0.00 0.00 41.97 2.57
2023 2471 8.631480 AAATACTTGTAGTTGGGGAAAACTAG 57.369 34.615 0.00 0.00 41.97 2.57
2024 2472 7.388500 CGAAATACTTGTAGTTGGGGAAAACTA 59.612 37.037 0.00 0.00 40.77 2.24
2025 2473 6.206048 CGAAATACTTGTAGTTGGGGAAAACT 59.794 38.462 0.00 0.00 42.89 2.66
2026 2474 6.016860 ACGAAATACTTGTAGTTGGGGAAAAC 60.017 38.462 7.60 0.00 0.00 2.43
2027 2475 6.063404 ACGAAATACTTGTAGTTGGGGAAAA 58.937 36.000 7.60 0.00 0.00 2.29
2028 2476 5.623169 ACGAAATACTTGTAGTTGGGGAAA 58.377 37.500 7.60 0.00 0.00 3.13
2029 2477 5.231702 ACGAAATACTTGTAGTTGGGGAA 57.768 39.130 7.60 0.00 0.00 3.97
2030 2478 4.895668 ACGAAATACTTGTAGTTGGGGA 57.104 40.909 7.60 0.00 0.00 4.81
2031 2479 5.933463 TGTAACGAAATACTTGTAGTTGGGG 59.067 40.000 7.60 0.00 0.00 4.96
2032 2480 6.869913 TCTGTAACGAAATACTTGTAGTTGGG 59.130 38.462 7.60 0.00 0.00 4.12
2033 2481 7.063074 CCTCTGTAACGAAATACTTGTAGTTGG 59.937 40.741 0.00 0.49 0.00 3.77
2034 2482 7.063074 CCCTCTGTAACGAAATACTTGTAGTTG 59.937 40.741 0.00 0.00 0.00 3.16
2035 2483 7.039504 TCCCTCTGTAACGAAATACTTGTAGTT 60.040 37.037 0.00 0.00 0.00 2.24
2036 2484 6.435277 TCCCTCTGTAACGAAATACTTGTAGT 59.565 38.462 0.00 0.00 0.00 2.73
2037 2485 6.860080 TCCCTCTGTAACGAAATACTTGTAG 58.140 40.000 0.00 0.00 0.00 2.74
2038 2486 6.435277 ACTCCCTCTGTAACGAAATACTTGTA 59.565 38.462 0.00 0.00 0.00 2.41
2039 2487 5.245526 ACTCCCTCTGTAACGAAATACTTGT 59.754 40.000 0.00 0.00 0.00 3.16
2040 2488 5.721232 ACTCCCTCTGTAACGAAATACTTG 58.279 41.667 0.00 0.00 0.00 3.16
2041 2489 5.997384 ACTCCCTCTGTAACGAAATACTT 57.003 39.130 0.00 0.00 0.00 2.24
2042 2490 5.948162 TGTACTCCCTCTGTAACGAAATACT 59.052 40.000 0.00 0.00 0.00 2.12
2043 2491 6.199937 TGTACTCCCTCTGTAACGAAATAC 57.800 41.667 0.00 0.00 0.00 1.89
2044 2492 6.839124 TTGTACTCCCTCTGTAACGAAATA 57.161 37.500 0.00 0.00 0.00 1.40
2045 2493 5.733620 TTGTACTCCCTCTGTAACGAAAT 57.266 39.130 0.00 0.00 0.00 2.17
2046 2494 5.733620 ATTGTACTCCCTCTGTAACGAAA 57.266 39.130 0.00 0.00 0.00 3.46
2047 2495 7.414222 AATATTGTACTCCCTCTGTAACGAA 57.586 36.000 0.00 0.00 0.00 3.85
2048 2496 7.994911 TCTAATATTGTACTCCCTCTGTAACGA 59.005 37.037 0.00 0.00 0.00 3.85
2049 2497 8.074972 GTCTAATATTGTACTCCCTCTGTAACG 58.925 40.741 0.00 0.00 0.00 3.18
2050 2498 9.134055 AGTCTAATATTGTACTCCCTCTGTAAC 57.866 37.037 0.00 0.00 0.00 2.50
2051 2499 9.352191 GAGTCTAATATTGTACTCCCTCTGTAA 57.648 37.037 15.89 0.00 33.74 2.41
2052 2500 8.500238 TGAGTCTAATATTGTACTCCCTCTGTA 58.500 37.037 20.59 6.03 38.04 2.74
2053 2501 7.355101 TGAGTCTAATATTGTACTCCCTCTGT 58.645 38.462 20.59 0.00 38.04 3.41
2054 2502 7.523052 GCTGAGTCTAATATTGTACTCCCTCTG 60.523 44.444 20.59 11.33 38.04 3.35
2055 2503 6.492087 GCTGAGTCTAATATTGTACTCCCTCT 59.508 42.308 20.59 1.17 38.04 3.69
2056 2504 6.492087 AGCTGAGTCTAATATTGTACTCCCTC 59.508 42.308 20.59 13.33 38.04 4.30
2057 2505 6.377912 AGCTGAGTCTAATATTGTACTCCCT 58.622 40.000 20.59 16.02 38.04 4.20
2058 2506 6.658188 AGCTGAGTCTAATATTGTACTCCC 57.342 41.667 20.59 14.74 38.04 4.30
2068 2516 8.840321 GGATGCAATTTTAAGCTGAGTCTAATA 58.160 33.333 0.00 0.00 0.00 0.98
2077 2525 3.183793 GGGGGATGCAATTTTAAGCTG 57.816 47.619 0.00 0.00 0.00 4.24
2127 2575 5.675684 AAAGATGTGTTTTTGGTCCTTGT 57.324 34.783 0.00 0.00 0.00 3.16
2198 2647 4.774726 ACTGAAGATGGTCTCTGCTTCTTA 59.225 41.667 0.00 0.00 38.03 2.10
2199 2648 3.582208 ACTGAAGATGGTCTCTGCTTCTT 59.418 43.478 0.00 0.00 38.03 2.52
2275 2762 4.401022 AGAGCACTTCCATTCATTGTTCA 58.599 39.130 0.00 0.00 0.00 3.18
2319 2810 8.535592 CATCGTAATAAAAGTTTGCAACAACAA 58.464 29.630 0.00 0.00 0.00 2.83
2365 2856 8.425491 CGTCAACTAATAGTTCACTACTGTTTG 58.575 37.037 5.68 0.00 38.84 2.93
2367 2858 7.655490 ACGTCAACTAATAGTTCACTACTGTT 58.345 34.615 5.68 0.00 40.72 3.16
2391 2883 4.065088 TCCACAATGTGCAACTCTCTAAC 58.935 43.478 8.05 0.00 38.04 2.34
2420 2912 8.200792 GTGAGATCTATCTAAAATCACCACTGT 58.799 37.037 0.00 0.00 37.25 3.55
2451 2943 4.336993 GGTACAAACAAACACATCCTCACA 59.663 41.667 0.00 0.00 0.00 3.58
2761 3255 2.029964 ACTGTTACCACCGCACCG 59.970 61.111 0.00 0.00 0.00 4.94
2857 3351 3.988976 ATGGAAAGCAAGCTAGACAGA 57.011 42.857 0.00 0.00 0.00 3.41
2968 3462 2.672961 TGTCATTCGGAGACATGGAC 57.327 50.000 0.00 0.00 40.80 4.02
3055 3549 1.269778 GGCGATTCATCCTCATCGTCA 60.270 52.381 1.47 0.00 45.01 4.35
3073 3567 2.203209 CACAATCCGGGGCTAGGC 60.203 66.667 8.00 8.00 0.00 3.93
3115 3609 4.124943 CCCTGCAGGCTGCCATCT 62.125 66.667 34.58 0.00 44.23 2.90
3172 3666 2.027625 GAACGTGCCCTTCTCACCG 61.028 63.158 0.00 0.00 0.00 4.94
3292 3786 1.140312 TGGGCTTTGTTCTCCACTCT 58.860 50.000 0.00 0.00 0.00 3.24
3300 3794 3.632145 TCTCAACTTCTTGGGCTTTGTTC 59.368 43.478 0.00 0.00 0.00 3.18
3433 3927 3.754850 TCTTCGATCTAGACACGTTTCCA 59.245 43.478 16.85 0.00 0.00 3.53
3558 4054 4.260139 TGTTACCGCAGAAATCAGTACA 57.740 40.909 0.00 0.00 0.00 2.90
3569 4065 2.151202 ACAAGTTCCATGTTACCGCAG 58.849 47.619 0.00 0.00 0.00 5.18
3572 4068 5.873179 AACATACAAGTTCCATGTTACCG 57.127 39.130 9.01 0.00 40.24 4.02
3590 4086 8.980481 ATTTACAAAGCTAGCCAGTATAACAT 57.020 30.769 12.13 0.64 0.00 2.71
3592 4088 7.644157 GCAATTTACAAAGCTAGCCAGTATAAC 59.356 37.037 12.13 0.00 0.00 1.89
3593 4089 7.466725 CGCAATTTACAAAGCTAGCCAGTATAA 60.467 37.037 12.13 9.19 0.00 0.98
3594 4090 6.018262 CGCAATTTACAAAGCTAGCCAGTATA 60.018 38.462 12.13 7.64 0.00 1.47
3595 4091 5.220854 CGCAATTTACAAAGCTAGCCAGTAT 60.221 40.000 12.13 0.00 0.00 2.12
3600 4096 2.479560 CCCGCAATTTACAAAGCTAGCC 60.480 50.000 12.13 0.00 0.00 3.93
3624 4120 1.002087 ACTGTAAGGCCTCCTTGTTCG 59.998 52.381 5.23 0.00 44.44 3.95
3626 4122 2.054799 TCACTGTAAGGCCTCCTTGTT 58.945 47.619 5.23 0.00 44.44 2.83
3627 4123 1.729586 TCACTGTAAGGCCTCCTTGT 58.270 50.000 5.23 0.00 44.44 3.16
3658 4154 7.095397 TGTGTACTGTGTACATACAATTTGCTC 60.095 37.037 12.74 0.00 38.04 4.26
3700 4196 3.857093 GCTAGATATGCTCTAAGCGCTTC 59.143 47.826 28.82 13.08 46.26 3.86
3716 4212 0.621571 TGAGGGGCCAACAGCTAGAT 60.622 55.000 4.39 0.00 43.05 1.98
3719 4215 1.229496 TCTGAGGGGCCAACAGCTA 60.229 57.895 19.64 5.68 43.05 3.32
3733 4229 1.139058 GCGATTTTAGGCTCCCTCTGA 59.861 52.381 0.00 0.00 34.61 3.27
3741 4237 0.462047 CCAGACGGCGATTTTAGGCT 60.462 55.000 16.62 0.00 0.00 4.58
3786 4283 2.686106 GGGACCAACTCGCCCCTA 60.686 66.667 0.00 0.00 35.76 3.53
3956 4473 2.578981 GCGACTACTCCGCGTTCC 60.579 66.667 4.92 0.00 43.28 3.62
3978 4495 0.447011 AGAAGGACGACGATGACGAC 59.553 55.000 0.00 0.00 42.66 4.34
3979 4496 0.725686 GAGAAGGACGACGATGACGA 59.274 55.000 0.00 0.00 42.66 4.20
4068 4648 2.278077 AACAACGACGACGACGCA 60.278 55.556 18.98 0.00 43.96 5.24
4284 4872 3.703127 AAAGACGGAGCCGGGTCC 61.703 66.667 37.69 37.69 44.69 4.46
4447 5036 0.679505 CTCACGGTCTTCTTCCCACA 59.320 55.000 0.00 0.00 0.00 4.17
4469 5058 1.309499 CGTCTTCCTCCTCGCACTCT 61.309 60.000 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.