Multiple sequence alignment - TraesCS3D01G302500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G302500 chr3D 100.000 7382 0 0 1 7382 417218775 417211394 0.000000e+00 13633.0
1 TraesCS3D01G302500 chr3D 93.252 163 9 1 5759 5919 128214168 128214006 9.570000e-59 239.0
2 TraesCS3D01G302500 chr3B 96.054 3675 106 18 2102 5760 543691979 543688328 0.000000e+00 5947.0
3 TraesCS3D01G302500 chr3B 86.337 2064 129 66 114 2107 543694037 543692057 0.000000e+00 2108.0
4 TraesCS3D01G302500 chr3B 93.367 799 30 12 6212 6994 543688084 543687293 0.000000e+00 1160.0
5 TraesCS3D01G302500 chr3B 93.676 253 10 3 5917 6168 543688329 543688082 2.510000e-99 374.0
6 TraesCS3D01G302500 chr3B 83.972 287 37 6 7035 7315 543687295 543687012 4.390000e-67 267.0
7 TraesCS3D01G302500 chr3B 93.827 162 8 1 5759 5918 121348092 121347931 7.400000e-60 243.0
8 TraesCS3D01G302500 chr3B 92.121 165 12 1 5758 5922 257781950 257782113 1.600000e-56 231.0
9 TraesCS3D01G302500 chr3B 95.652 46 2 0 7000 7045 409602594 409602549 2.860000e-09 75.0
10 TraesCS3D01G302500 chr3B 93.750 48 3 0 7000 7047 132723749 132723796 1.030000e-08 73.1
11 TraesCS3D01G302500 chr3B 81.928 83 11 4 6971 7052 644917973 644917894 4.780000e-07 67.6
12 TraesCS3D01G302500 chr3A 95.695 2718 71 10 3081 5760 533623334 533626043 0.000000e+00 4329.0
13 TraesCS3D01G302500 chr3A 88.779 1818 144 32 1309 3082 533621451 533623252 0.000000e+00 2172.0
14 TraesCS3D01G302500 chr3A 93.819 1084 43 12 5917 6993 533626042 533627108 0.000000e+00 1609.0
15 TraesCS3D01G302500 chr3A 87.390 1245 82 31 1 1199 533620184 533621399 0.000000e+00 1360.0
16 TraesCS3D01G302500 chr3A 88.194 288 23 6 7035 7315 533627107 533627390 4.270000e-87 333.0
17 TraesCS3D01G302500 chr3A 95.652 46 2 0 7000 7045 420745261 420745216 2.860000e-09 75.0
18 TraesCS3D01G302500 chrUn 87.390 1245 82 31 1 1199 263816186 263817401 0.000000e+00 1360.0
19 TraesCS3D01G302500 chrUn 83.585 463 51 13 1309 1748 263817453 263817913 1.920000e-110 411.0
20 TraesCS3D01G302500 chr2A 94.444 162 7 1 5759 5918 135473389 135473228 1.590000e-61 248.0
21 TraesCS3D01G302500 chr2A 89.773 176 13 3 5759 5932 184561315 184561143 3.470000e-53 220.0
22 TraesCS3D01G302500 chr2A 86.441 59 8 0 7000 7058 729165634 729165576 1.720000e-06 65.8
23 TraesCS3D01G302500 chr6D 92.593 162 10 1 5759 5918 287025403 287025242 1.600000e-56 231.0
24 TraesCS3D01G302500 chr6D 89.091 55 4 2 6994 7046 196357954 196357900 4.780000e-07 67.6
25 TraesCS3D01G302500 chr1D 92.593 162 10 1 5759 5918 46634454 46634615 1.600000e-56 231.0
26 TraesCS3D01G302500 chr1B 91.124 169 11 3 5759 5925 314565539 314565705 7.450000e-55 226.0
27 TraesCS3D01G302500 chr7A 90.588 170 14 2 5759 5928 91646327 91646160 2.680000e-54 224.0
28 TraesCS3D01G302500 chr6A 97.872 47 0 1 6993 7038 203599988 203599942 6.140000e-11 80.5
29 TraesCS3D01G302500 chr2D 86.364 66 3 5 6987 7046 18147817 18147882 4.780000e-07 67.6
30 TraesCS3D01G302500 chr2B 88.889 54 6 0 7000 7053 668383061 668383114 4.780000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G302500 chr3D 417211394 417218775 7381 True 13633.0 13633 100.0000 1 7382 1 chr3D.!!$R2 7381
1 TraesCS3D01G302500 chr3B 543687012 543694037 7025 True 1971.2 5947 90.6812 114 7315 5 chr3B.!!$R4 7201
2 TraesCS3D01G302500 chr3A 533620184 533627390 7206 False 1960.6 4329 90.7754 1 7315 5 chr3A.!!$F1 7314
3 TraesCS3D01G302500 chrUn 263816186 263817913 1727 False 885.5 1360 85.4875 1 1748 2 chrUn.!!$F1 1747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 446 1.064685 TGCGATACTCTCTCTGTCCCA 60.065 52.381 0.00 0.00 0.00 4.37 F
1272 1396 0.179124 CTTTCGGAGCGGAGAGAAGG 60.179 60.000 0.00 0.00 0.00 3.46 F
1760 1915 0.106708 TGGAGGGCATTACGCTGATC 59.893 55.000 0.00 0.00 42.62 2.92 F
2538 2790 0.892755 AATGCTTGCACTGTCCATGG 59.107 50.000 4.97 4.97 0.00 3.66 F
3141 3484 1.078143 GTGGTCCTGTGGGCATCTC 60.078 63.158 0.00 0.00 0.00 2.75 F
3805 4148 0.819259 AGCGCTTGTCTTTTGAGGCA 60.819 50.000 2.64 0.00 0.00 4.75 F
4099 4442 2.010497 GAGGAGAAACGGGAAGCAATC 58.990 52.381 0.00 0.00 0.00 2.67 F
4309 4652 2.229062 GGAACTACAAAAGGAAGCTGCC 59.771 50.000 0.73 0.73 0.00 4.85 F
6220 6607 0.537371 GTGCCCTTGTGCCTTACTGT 60.537 55.000 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 1522 0.765510 AGGAACCAAGAAACGAGGCT 59.234 50.000 0.00 0.0 0.00 4.58 R
2175 2426 2.607187 GTCAGAGGTATGTGACGGTTG 58.393 52.381 0.00 0.0 39.61 3.77 R
2791 3048 2.957680 TGCTTCAGCTGATTTGGTTTCA 59.042 40.909 19.04 4.2 42.66 2.69 R
3805 4148 1.540707 GTCCTCTTCGTCTCCGTTTCT 59.459 52.381 0.00 0.0 35.01 2.52 R
4959 5329 1.125093 TTCGCCACAAGGAAGGAGGA 61.125 55.000 0.00 0.0 36.89 3.71 R
5307 5677 0.036388 CTTCCGCCTTGGCTCTACAA 60.036 55.000 10.12 0.0 37.80 2.41 R
5309 5679 0.822164 TACTTCCGCCTTGGCTCTAC 59.178 55.000 10.12 0.0 37.80 2.59 R
6261 6648 0.535780 TGCCTTCAAGTGCTCCAGTG 60.536 55.000 0.41 0.0 0.00 3.66 R
7228 7640 0.251519 AGCTGCTTTTTAGCCAGCCT 60.252 50.000 8.10 0.0 42.07 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.900782 ATGTGGTTAATACTTGTACTGACAC 57.099 36.000 0.00 0.00 34.48 3.67
26 27 6.151691 GTGGTTAATACTTGTACTGACACGA 58.848 40.000 0.00 0.00 34.48 4.35
85 86 4.032703 TCAACAAAGCTCTCTTGTTTGC 57.967 40.909 11.43 0.00 35.05 3.68
91 92 2.411904 AGCTCTCTTGTTTGCTCTTCG 58.588 47.619 0.00 0.00 0.00 3.79
92 93 1.136113 GCTCTCTTGTTTGCTCTTCGC 60.136 52.381 0.00 0.00 39.77 4.70
215 218 9.959749 TGTAGAATATTCAAACCAAGTCAAAAC 57.040 29.630 17.56 0.00 0.00 2.43
216 219 9.113876 GTAGAATATTCAAACCAAGTCAAAACG 57.886 33.333 17.56 0.00 0.00 3.60
217 220 7.145323 AGAATATTCAAACCAAGTCAAAACGG 58.855 34.615 17.56 0.00 0.00 4.44
218 221 4.729227 ATTCAAACCAAGTCAAAACGGT 57.271 36.364 0.00 0.00 0.00 4.83
219 222 5.838531 ATTCAAACCAAGTCAAAACGGTA 57.161 34.783 0.00 0.00 0.00 4.02
220 223 5.838531 TTCAAACCAAGTCAAAACGGTAT 57.161 34.783 0.00 0.00 0.00 2.73
221 224 6.939132 TTCAAACCAAGTCAAAACGGTATA 57.061 33.333 0.00 0.00 0.00 1.47
222 225 6.939132 TCAAACCAAGTCAAAACGGTATAA 57.061 33.333 0.00 0.00 0.00 0.98
223 226 6.727215 TCAAACCAAGTCAAAACGGTATAAC 58.273 36.000 0.00 0.00 0.00 1.89
231 244 5.934043 AGTCAAAACGGTATAACAAGGGTAC 59.066 40.000 0.00 0.00 0.00 3.34
248 261 2.353011 GGTACGTGTGGCTAGCAACTTA 60.353 50.000 22.70 8.91 0.00 2.24
250 263 2.140717 ACGTGTGGCTAGCAACTTAAC 58.859 47.619 22.70 11.88 0.00 2.01
251 264 2.224209 ACGTGTGGCTAGCAACTTAACT 60.224 45.455 22.70 1.48 0.00 2.24
252 265 2.412089 CGTGTGGCTAGCAACTTAACTC 59.588 50.000 22.70 7.58 0.00 3.01
253 266 3.399330 GTGTGGCTAGCAACTTAACTCA 58.601 45.455 22.70 4.84 0.00 3.41
262 275 7.910683 GGCTAGCAACTTAACTCATGAATTTAC 59.089 37.037 18.24 0.00 0.00 2.01
273 300 8.485976 AACTCATGAATTTACTACTCTGCTTC 57.514 34.615 0.00 0.00 0.00 3.86
281 308 8.535690 AATTTACTACTCTGCTTCAGTGTTAC 57.464 34.615 6.82 0.00 38.76 2.50
319 352 6.809196 TGTGCGTTGAAACTTAAAAGTGAAAT 59.191 30.769 0.00 0.00 39.66 2.17
321 354 8.166066 GTGCGTTGAAACTTAAAAGTGAAATTT 58.834 29.630 0.00 0.00 39.66 1.82
360 402 7.885297 TCAGGAATTGTCAAAATTAGTTCTGG 58.115 34.615 0.00 0.00 0.00 3.86
368 410 7.648142 TGTCAAAATTAGTTCTGGATCACAAC 58.352 34.615 0.00 0.00 0.00 3.32
369 411 7.284261 TGTCAAAATTAGTTCTGGATCACAACA 59.716 33.333 0.00 0.00 0.00 3.33
386 428 3.888934 CAACAGAAGGTGTGTTGTATGC 58.111 45.455 9.45 0.00 46.45 3.14
391 433 4.032900 CAGAAGGTGTGTTGTATGCGATAC 59.967 45.833 0.00 0.00 36.29 2.24
392 434 3.887621 AGGTGTGTTGTATGCGATACT 57.112 42.857 0.00 0.00 36.70 2.12
393 435 3.782046 AGGTGTGTTGTATGCGATACTC 58.218 45.455 0.00 0.00 36.70 2.59
394 436 3.447586 AGGTGTGTTGTATGCGATACTCT 59.552 43.478 0.00 0.00 36.70 3.24
395 437 3.797256 GGTGTGTTGTATGCGATACTCTC 59.203 47.826 0.00 4.13 36.70 3.20
396 438 4.440250 GGTGTGTTGTATGCGATACTCTCT 60.440 45.833 0.00 0.00 36.70 3.10
397 439 4.735822 GTGTGTTGTATGCGATACTCTCTC 59.264 45.833 0.00 0.00 36.70 3.20
398 440 4.640647 TGTGTTGTATGCGATACTCTCTCT 59.359 41.667 0.00 0.00 36.70 3.10
399 441 4.973051 GTGTTGTATGCGATACTCTCTCTG 59.027 45.833 0.00 0.00 36.70 3.35
400 442 4.640647 TGTTGTATGCGATACTCTCTCTGT 59.359 41.667 0.00 0.00 36.70 3.41
401 443 5.209240 GTTGTATGCGATACTCTCTCTGTC 58.791 45.833 0.00 0.00 36.70 3.51
402 444 3.815962 TGTATGCGATACTCTCTCTGTCC 59.184 47.826 0.00 0.00 36.70 4.02
403 445 1.681538 TGCGATACTCTCTCTGTCCC 58.318 55.000 0.00 0.00 0.00 4.46
404 446 1.064685 TGCGATACTCTCTCTGTCCCA 60.065 52.381 0.00 0.00 0.00 4.37
405 447 2.235016 GCGATACTCTCTCTGTCCCAT 58.765 52.381 0.00 0.00 0.00 4.00
406 448 3.181443 TGCGATACTCTCTCTGTCCCATA 60.181 47.826 0.00 0.00 0.00 2.74
407 449 4.013728 GCGATACTCTCTCTGTCCCATAT 58.986 47.826 0.00 0.00 0.00 1.78
498 543 5.953183 TCCATTATTGAAGCATCACAACAC 58.047 37.500 0.00 0.00 34.61 3.32
499 544 5.476254 TCCATTATTGAAGCATCACAACACA 59.524 36.000 0.00 0.00 34.61 3.72
500 545 6.153170 TCCATTATTGAAGCATCACAACACAT 59.847 34.615 0.00 0.00 34.61 3.21
572 618 3.788333 ATGATCAAAGAAACATGCCCG 57.212 42.857 0.00 0.00 0.00 6.13
578 624 5.913137 TCAAAGAAACATGCCCGATTATT 57.087 34.783 0.00 0.00 0.00 1.40
656 714 2.192664 TCCGCTGCCAGTAATCAAAA 57.807 45.000 0.00 0.00 0.00 2.44
1171 1266 4.150454 CTCGCTCCCTCCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
1209 1308 3.643595 TTTCATGGGCCGGGCTCTG 62.644 63.158 28.80 23.38 0.00 3.35
1234 1333 3.814268 CGTTCTTGGCATGCCGGG 61.814 66.667 30.87 24.33 39.42 5.73
1262 1386 1.746991 CTGGGGCTTCTTTCGGAGC 60.747 63.158 0.00 0.00 0.00 4.70
1266 1390 1.811679 GGCTTCTTTCGGAGCGGAG 60.812 63.158 0.00 0.00 0.00 4.63
1267 1391 1.215647 GCTTCTTTCGGAGCGGAGA 59.784 57.895 0.00 0.00 0.00 3.71
1269 1393 0.811915 CTTCTTTCGGAGCGGAGAGA 59.188 55.000 0.00 0.00 0.00 3.10
1270 1394 1.202582 CTTCTTTCGGAGCGGAGAGAA 59.797 52.381 9.54 9.54 0.00 2.87
1272 1396 0.179124 CTTTCGGAGCGGAGAGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
1273 1397 0.611062 TTTCGGAGCGGAGAGAAGGA 60.611 55.000 0.00 0.00 0.00 3.36
1274 1398 1.032657 TTCGGAGCGGAGAGAAGGAG 61.033 60.000 0.00 0.00 0.00 3.69
1277 1401 2.361865 AGCGGAGAGAAGGAGCGT 60.362 61.111 0.00 0.00 0.00 5.07
1278 1402 1.939769 GAGCGGAGAGAAGGAGCGTT 61.940 60.000 0.00 0.00 0.00 4.84
1279 1403 0.680280 AGCGGAGAGAAGGAGCGTTA 60.680 55.000 0.00 0.00 0.00 3.18
1280 1404 0.248702 GCGGAGAGAAGGAGCGTTAG 60.249 60.000 0.00 0.00 0.00 2.34
1281 1405 1.096416 CGGAGAGAAGGAGCGTTAGT 58.904 55.000 0.00 0.00 0.00 2.24
1282 1406 1.473278 CGGAGAGAAGGAGCGTTAGTT 59.527 52.381 0.00 0.00 0.00 2.24
1283 1407 2.732597 CGGAGAGAAGGAGCGTTAGTTG 60.733 54.545 0.00 0.00 0.00 3.16
1284 1408 2.417515 GGAGAGAAGGAGCGTTAGTTGG 60.418 54.545 0.00 0.00 0.00 3.77
1285 1409 2.492484 GAGAGAAGGAGCGTTAGTTGGA 59.508 50.000 0.00 0.00 0.00 3.53
1286 1410 2.897969 AGAGAAGGAGCGTTAGTTGGAA 59.102 45.455 0.00 0.00 0.00 3.53
1287 1411 3.323979 AGAGAAGGAGCGTTAGTTGGAAA 59.676 43.478 0.00 0.00 0.00 3.13
1288 1412 3.665190 AGAAGGAGCGTTAGTTGGAAAG 58.335 45.455 0.00 0.00 0.00 2.62
1289 1413 2.474410 AGGAGCGTTAGTTGGAAAGG 57.526 50.000 0.00 0.00 0.00 3.11
1290 1414 1.975680 AGGAGCGTTAGTTGGAAAGGA 59.024 47.619 0.00 0.00 0.00 3.36
1291 1415 2.572104 AGGAGCGTTAGTTGGAAAGGAT 59.428 45.455 0.00 0.00 0.00 3.24
1292 1416 3.009143 AGGAGCGTTAGTTGGAAAGGATT 59.991 43.478 0.00 0.00 0.00 3.01
1293 1417 4.224370 AGGAGCGTTAGTTGGAAAGGATTA 59.776 41.667 0.00 0.00 0.00 1.75
1294 1418 4.571176 GGAGCGTTAGTTGGAAAGGATTAG 59.429 45.833 0.00 0.00 0.00 1.73
1295 1419 3.939592 AGCGTTAGTTGGAAAGGATTAGC 59.060 43.478 0.00 0.00 0.00 3.09
1296 1420 3.242316 GCGTTAGTTGGAAAGGATTAGCG 60.242 47.826 0.00 0.00 0.00 4.26
1297 1421 4.178540 CGTTAGTTGGAAAGGATTAGCGA 58.821 43.478 0.00 0.00 0.00 4.93
1298 1422 4.628333 CGTTAGTTGGAAAGGATTAGCGAA 59.372 41.667 0.00 0.00 0.00 4.70
1299 1423 5.220416 CGTTAGTTGGAAAGGATTAGCGAAG 60.220 44.000 0.00 0.00 0.00 3.79
1300 1424 3.610911 AGTTGGAAAGGATTAGCGAAGG 58.389 45.455 0.00 0.00 0.00 3.46
1301 1425 2.038387 TGGAAAGGATTAGCGAAGGC 57.962 50.000 0.00 0.00 40.37 4.35
1302 1426 0.938008 GGAAAGGATTAGCGAAGGCG 59.062 55.000 0.00 0.00 46.35 5.52
1397 1522 1.603802 CTTCTTGGTTTCTGCTCGCAA 59.396 47.619 0.00 0.00 0.00 4.85
1448 1582 0.676466 TGCGTGAATGGGTTGCCTAG 60.676 55.000 0.00 0.00 0.00 3.02
1493 1629 2.561209 TTGCCCAGTATCTGTAGGGA 57.439 50.000 0.00 0.00 44.30 4.20
1506 1642 2.494073 CTGTAGGGAGGAGTTGACTGTC 59.506 54.545 0.00 0.00 0.00 3.51
1515 1651 2.263077 GAGTTGACTGTCGTAGGCATG 58.737 52.381 2.98 0.00 46.42 4.06
1561 1697 2.852449 TGTTGACTTGGGATTGCGTAA 58.148 42.857 0.00 0.00 0.00 3.18
1569 1705 6.016192 TGACTTGGGATTGCGTAAATTTTACA 60.016 34.615 17.14 1.17 0.00 2.41
1573 1709 6.383415 TGGGATTGCGTAAATTTTACACTTC 58.617 36.000 17.14 9.76 0.00 3.01
1574 1710 5.510323 GGGATTGCGTAAATTTTACACTTCG 59.490 40.000 17.14 6.07 0.00 3.79
1583 1719 7.319615 CGTAAATTTTACACTTCGTGGTTCTTC 59.680 37.037 17.14 0.00 37.94 2.87
1695 1848 2.653726 TGCAGTGAATGGTTCAACAGT 58.346 42.857 0.00 0.00 42.15 3.55
1703 1856 2.258726 GGTTCAACAGTGGTCCGCC 61.259 63.158 0.00 0.00 0.00 6.13
1760 1915 0.106708 TGGAGGGCATTACGCTGATC 59.893 55.000 0.00 0.00 42.62 2.92
1816 1972 5.741388 ATTTTATTGGTCTCAGCATCGAC 57.259 39.130 0.00 0.00 0.00 4.20
1859 2015 6.569780 ACTTTTCGGCAAACATTTTCTTAGT 58.430 32.000 0.00 0.00 0.00 2.24
1868 2024 8.568794 GGCAAACATTTTCTTAGTCTTACTCTT 58.431 33.333 0.00 0.00 0.00 2.85
1952 2110 5.112686 CCTTTGTCTCATAGACCTAACTGC 58.887 45.833 4.69 0.00 44.44 4.40
1954 2112 4.991153 TGTCTCATAGACCTAACTGCAG 57.009 45.455 13.48 13.48 44.44 4.41
1985 2143 3.473625 ACCAAAGTTTCCTACGAACAGG 58.526 45.455 0.00 0.00 37.00 4.00
2049 2211 5.483685 TCAACTGTACAGGTTGCTAATCT 57.516 39.130 26.12 0.00 42.40 2.40
2066 2228 6.038603 TGCTAATCTGGTTGCTCAATATGTTC 59.961 38.462 0.00 0.00 0.00 3.18
2087 2249 7.848128 TGTTCTAGGAAGTAGGAACCATTAAG 58.152 38.462 0.00 0.00 0.00 1.85
2088 2250 7.456902 TGTTCTAGGAAGTAGGAACCATTAAGT 59.543 37.037 0.00 0.00 0.00 2.24
2148 2398 5.048083 TCCATGTCAAAAGGCTAATGTTCAC 60.048 40.000 0.00 0.00 0.00 3.18
2156 2406 7.555914 TCAAAAGGCTAATGTTCACTATATGCA 59.444 33.333 0.00 0.00 0.00 3.96
2175 2426 2.356069 GCAGTAAGCTATCCTGTTTGGC 59.644 50.000 8.47 0.00 41.15 4.52
2179 2430 1.839424 AGCTATCCTGTTTGGCAACC 58.161 50.000 0.00 0.00 35.26 3.77
2201 2452 3.311322 CGTCACATACCTCTGACTCTCTC 59.689 52.174 0.00 0.00 35.58 3.20
2202 2453 4.523083 GTCACATACCTCTGACTCTCTCT 58.477 47.826 0.00 0.00 34.99 3.10
2409 2660 3.797559 AGGAAGAGGGAAGAAAACCTG 57.202 47.619 0.00 0.00 37.18 4.00
2531 2783 3.976942 GTCACAACTAAATGCTTGCACTG 59.023 43.478 0.00 0.00 0.00 3.66
2538 2790 0.892755 AATGCTTGCACTGTCCATGG 59.107 50.000 4.97 4.97 0.00 3.66
2571 2823 8.875803 CAAAGATGGACATTAAATTGAACATGG 58.124 33.333 0.00 0.00 0.00 3.66
2623 2876 4.783560 TCATCAACATCATGGTCTCCAT 57.216 40.909 0.00 0.00 46.37 3.41
2669 2923 9.632638 ATTCTTATGCCAACATTACACTTCTAT 57.367 29.630 0.00 0.00 37.74 1.98
2791 3048 5.506708 ACAGCCGAAATAAAGGTTTCCTAT 58.493 37.500 0.00 0.00 35.23 2.57
3042 3299 6.713762 TGGCCTTTCTAACCAATATCAATG 57.286 37.500 3.32 0.00 0.00 2.82
3141 3484 1.078143 GTGGTCCTGTGGGCATCTC 60.078 63.158 0.00 0.00 0.00 2.75
3157 3500 5.367302 GGCATCTCTCTTCTTTGCTATCTT 58.633 41.667 0.00 0.00 33.86 2.40
3178 3521 6.805713 TCTTAATCGAGTATGTCATTGCAGA 58.194 36.000 5.80 0.00 0.00 4.26
3181 3524 8.520835 TTAATCGAGTATGTCATTGCAGATAC 57.479 34.615 0.00 0.00 0.00 2.24
3280 3623 3.997021 AGGTGCTACTGAAAGAACAATCG 59.003 43.478 0.00 0.00 37.43 3.34
3436 3779 4.568072 TCTTAAAATGGAGGCAGTAGCA 57.432 40.909 0.00 0.00 44.61 3.49
3455 3798 3.118112 AGCATCAAGGGAGGAAGTATGTG 60.118 47.826 0.00 0.00 0.00 3.21
3482 3825 7.699566 TGTTTTTACTGATCGTTTTGTTAGCT 58.300 30.769 0.00 0.00 0.00 3.32
3633 3976 6.370186 AATAAAGAACGGGTAGGTTTCTCT 57.630 37.500 0.00 0.00 0.00 3.10
3644 3987 7.397192 ACGGGTAGGTTTCTCTAGTTTACATTA 59.603 37.037 0.00 0.00 0.00 1.90
3805 4148 0.819259 AGCGCTTGTCTTTTGAGGCA 60.819 50.000 2.64 0.00 0.00 4.75
3810 4153 3.375642 GCTTGTCTTTTGAGGCAGAAAC 58.624 45.455 0.00 0.00 0.00 2.78
3899 4242 3.386402 TCAAAGGGACCAAAATGTTGACC 59.614 43.478 0.00 0.40 36.83 4.02
4099 4442 2.010497 GAGGAGAAACGGGAAGCAATC 58.990 52.381 0.00 0.00 0.00 2.67
4291 4634 6.322201 AGCTGTTTGATGAAAAGAAAGAGGAA 59.678 34.615 0.00 0.00 0.00 3.36
4309 4652 2.229062 GGAACTACAAAAGGAAGCTGCC 59.771 50.000 0.73 0.73 0.00 4.85
4444 4787 5.296151 TCTCCTGTGAACATGAAGAGTTT 57.704 39.130 0.00 0.00 0.00 2.66
5144 5514 8.421784 GTTCTGGTCATGATAATGGTAGACTTA 58.578 37.037 0.00 0.00 0.00 2.24
5149 5519 9.429359 GGTCATGATAATGGTAGACTTATTCAG 57.571 37.037 0.00 0.00 0.00 3.02
5246 5616 5.335191 GCTGGAGAAATACCTCAAGTTGTTG 60.335 44.000 2.11 0.00 36.74 3.33
5261 5631 5.590530 AGTTGTTGATGGTGCAAAAGTTA 57.409 34.783 0.00 0.00 0.00 2.24
5263 5633 5.127031 AGTTGTTGATGGTGCAAAAGTTAGT 59.873 36.000 0.00 0.00 0.00 2.24
5304 5674 6.045318 CGTTCTCATATGATCCAAGTGAAGT 58.955 40.000 5.72 0.00 0.00 3.01
5307 5677 8.734386 GTTCTCATATGATCCAAGTGAAGTTTT 58.266 33.333 5.72 0.00 0.00 2.43
5308 5678 8.868522 TCTCATATGATCCAAGTGAAGTTTTT 57.131 30.769 5.72 0.00 0.00 1.94
5309 5679 8.733458 TCTCATATGATCCAAGTGAAGTTTTTG 58.267 33.333 5.72 0.00 0.00 2.44
5314 5684 7.496529 TGATCCAAGTGAAGTTTTTGTAGAG 57.503 36.000 0.00 0.00 0.00 2.43
5366 5736 3.519510 TCAGACAGTAATTGGAGGGGAAG 59.480 47.826 0.00 0.00 0.00 3.46
5552 5925 1.982660 ATCTGGCATCAGCAAGGATG 58.017 50.000 8.24 8.24 42.40 3.51
5758 6140 8.247562 TGTTGAGTGTTGTAATAAACTTTGCTT 58.752 29.630 0.00 0.00 0.00 3.91
5759 6141 9.724839 GTTGAGTGTTGTAATAAACTTTGCTTA 57.275 29.630 0.00 0.00 0.00 3.09
5760 6142 9.724839 TTGAGTGTTGTAATAAACTTTGCTTAC 57.275 29.630 0.00 0.00 0.00 2.34
5761 6143 9.116067 TGAGTGTTGTAATAAACTTTGCTTACT 57.884 29.630 8.86 0.00 0.00 2.24
5762 6144 9.595357 GAGTGTTGTAATAAACTTTGCTTACTC 57.405 33.333 0.00 0.00 0.00 2.59
5763 6145 8.565416 AGTGTTGTAATAAACTTTGCTTACTCC 58.435 33.333 8.86 3.34 0.00 3.85
5764 6146 7.806487 GTGTTGTAATAAACTTTGCTTACTCCC 59.194 37.037 8.86 0.00 0.00 4.30
5765 6147 7.722285 TGTTGTAATAAACTTTGCTTACTCCCT 59.278 33.333 8.86 0.00 0.00 4.20
5766 6148 7.916914 TGTAATAAACTTTGCTTACTCCCTC 57.083 36.000 8.86 0.00 0.00 4.30
5767 6149 6.882678 TGTAATAAACTTTGCTTACTCCCTCC 59.117 38.462 8.86 0.00 0.00 4.30
5768 6150 2.474410 AACTTTGCTTACTCCCTCCG 57.526 50.000 0.00 0.00 0.00 4.63
5769 6151 1.349067 ACTTTGCTTACTCCCTCCGT 58.651 50.000 0.00 0.00 0.00 4.69
5770 6152 1.697982 ACTTTGCTTACTCCCTCCGTT 59.302 47.619 0.00 0.00 0.00 4.44
5771 6153 2.289506 ACTTTGCTTACTCCCTCCGTTC 60.290 50.000 0.00 0.00 0.00 3.95
5772 6154 0.611714 TTGCTTACTCCCTCCGTTCC 59.388 55.000 0.00 0.00 0.00 3.62
5773 6155 0.543410 TGCTTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
5774 6156 0.611714 GCTTACTCCCTCCGTTCCAA 59.388 55.000 0.00 0.00 0.00 3.53
5775 6157 1.002773 GCTTACTCCCTCCGTTCCAAA 59.997 52.381 0.00 0.00 0.00 3.28
5776 6158 2.551504 GCTTACTCCCTCCGTTCCAAAA 60.552 50.000 0.00 0.00 0.00 2.44
5777 6159 3.872630 GCTTACTCCCTCCGTTCCAAAAT 60.873 47.826 0.00 0.00 0.00 1.82
5778 6160 4.624604 GCTTACTCCCTCCGTTCCAAAATA 60.625 45.833 0.00 0.00 0.00 1.40
5779 6161 5.681639 CTTACTCCCTCCGTTCCAAAATAT 58.318 41.667 0.00 0.00 0.00 1.28
5780 6162 6.687139 GCTTACTCCCTCCGTTCCAAAATATA 60.687 42.308 0.00 0.00 0.00 0.86
5781 6163 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
5782 6164 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
5783 6165 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
5784 6166 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
5785 6167 4.820173 CCCTCCGTTCCAAAATATAAGTCC 59.180 45.833 0.00 0.00 0.00 3.85
5786 6168 5.397559 CCCTCCGTTCCAAAATATAAGTCCT 60.398 44.000 0.00 0.00 0.00 3.85
5787 6169 6.120220 CCTCCGTTCCAAAATATAAGTCCTT 58.880 40.000 0.00 0.00 0.00 3.36
5788 6170 6.602009 CCTCCGTTCCAAAATATAAGTCCTTT 59.398 38.462 0.00 0.00 0.00 3.11
5789 6171 7.122204 CCTCCGTTCCAAAATATAAGTCCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
5790 6172 9.169592 CTCCGTTCCAAAATATAAGTCCTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
5791 6173 9.169592 TCCGTTCCAAAATATAAGTCCTTTTAG 57.830 33.333 0.00 0.00 0.00 1.85
5792 6174 9.169592 CCGTTCCAAAATATAAGTCCTTTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
5825 6207 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
5826 6208 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
5827 6209 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
5828 6210 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
5829 6211 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
5830 6212 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
5831 6213 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
5832 6214 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
5833 6215 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
5834 6216 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
5835 6217 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
5836 6218 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
5837 6219 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
5838 6220 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
5876 6258 3.764218 ACATCCGTATGTAGTCCCTAGG 58.236 50.000 0.06 0.06 44.66 3.02
5877 6259 2.965671 TCCGTATGTAGTCCCTAGGG 57.034 55.000 23.22 23.22 0.00 3.53
5878 6260 2.421725 TCCGTATGTAGTCCCTAGGGA 58.578 52.381 27.73 27.73 42.90 4.20
5879 6261 7.179123 ACATCCGTATGTAGTCCCTAGGGAA 62.179 48.000 32.73 17.49 44.41 3.97
5880 6262 8.576523 ACATCCGTATGTAGTCCCTAGGGAAA 62.577 46.154 32.73 20.33 44.41 3.13
5881 6263 9.787227 ACATCCGTATGTAGTCCCTAGGGAAAT 62.787 44.444 32.73 24.62 44.41 2.17
5893 6275 7.196637 TCCCTAGGGAAATCTCTAAAAAGAC 57.803 40.000 29.24 0.00 42.05 3.01
5894 6276 6.966461 TCCCTAGGGAAATCTCTAAAAAGACT 59.034 38.462 29.24 0.00 42.05 3.24
5895 6277 7.461363 TCCCTAGGGAAATCTCTAAAAAGACTT 59.539 37.037 29.24 0.00 42.05 3.01
5896 6278 8.769359 CCCTAGGGAAATCTCTAAAAAGACTTA 58.231 37.037 24.99 0.00 37.50 2.24
5935 6317 8.411991 AGGGAGTATGTTATTCTAGCTCTTAC 57.588 38.462 0.00 0.00 0.00 2.34
5995 6377 8.635765 TTACCTAATTTTCTGCTGAACAAGAT 57.364 30.769 5.41 0.00 31.02 2.40
6003 6385 8.902540 TTTTCTGCTGAACAAGATTAACTCTA 57.097 30.769 5.41 0.00 30.12 2.43
6169 6556 0.907704 TATCAACTGTCCGGTGCCCT 60.908 55.000 0.00 0.00 0.00 5.19
6189 6576 7.492344 GTGCCCTTGTATTTTGGATCTTAAATG 59.508 37.037 12.74 1.22 0.00 2.32
6197 6584 5.643379 TTTGGATCTTAAATGTCACTGCC 57.357 39.130 0.00 0.00 0.00 4.85
6220 6607 0.537371 GTGCCCTTGTGCCTTACTGT 60.537 55.000 0.00 0.00 0.00 3.55
6261 6648 2.592287 TCCGCAACCGAACCAACC 60.592 61.111 0.00 0.00 36.29 3.77
6410 6798 3.056749 GCTTCCCCGGTAGTATAGACATG 60.057 52.174 0.00 0.00 0.00 3.21
6480 6868 3.076621 TGCTCTTAGCTCCATTTGTGTG 58.923 45.455 0.00 0.00 42.97 3.82
6484 6872 2.093306 TAGCTCCATTTGTGTGTCCG 57.907 50.000 0.00 0.00 0.00 4.79
6639 7027 3.412386 AGTGGTTGATAGCTTGTGGTTC 58.588 45.455 0.00 0.00 0.00 3.62
6644 7032 2.412870 TGATAGCTTGTGGTTCGTGTG 58.587 47.619 0.00 0.00 0.00 3.82
6729 7122 2.356313 CGCCTGTTCAGTGCTCGT 60.356 61.111 9.98 0.00 0.00 4.18
6761 7155 8.868522 AGGTGATTTTTATTCTCTTGATGTGA 57.131 30.769 0.00 0.00 0.00 3.58
6762 7156 8.954350 AGGTGATTTTTATTCTCTTGATGTGAG 58.046 33.333 0.00 0.00 0.00 3.51
6798 7192 3.737774 GTCTTGCAAGAAATTTGTGGCTC 59.262 43.478 29.99 9.88 36.68 4.70
6817 7211 0.027716 CGTCTGATTGATGCTGCTGC 59.972 55.000 8.89 8.89 40.20 5.25
6818 7212 1.380524 GTCTGATTGATGCTGCTGCT 58.619 50.000 17.00 2.26 40.48 4.24
6821 7215 0.808755 TGATTGATGCTGCTGCTGTG 59.191 50.000 17.00 0.00 40.48 3.66
6822 7216 0.100682 GATTGATGCTGCTGCTGTGG 59.899 55.000 17.00 0.00 40.48 4.17
6823 7217 0.611062 ATTGATGCTGCTGCTGTGGT 60.611 50.000 17.00 0.00 40.48 4.16
6824 7218 1.239296 TTGATGCTGCTGCTGTGGTC 61.239 55.000 17.00 7.60 40.48 4.02
6825 7219 1.376942 GATGCTGCTGCTGTGGTCT 60.377 57.895 17.00 0.00 40.48 3.85
6826 7220 1.367599 GATGCTGCTGCTGTGGTCTC 61.368 60.000 17.00 0.00 40.48 3.36
6864 7258 0.814457 TTGCTGCTCGGTGTTGTTTT 59.186 45.000 0.00 0.00 0.00 2.43
6952 7356 0.696501 AATTAGGGCCACGTCAGGTT 59.303 50.000 6.18 0.00 0.00 3.50
7005 7410 8.915036 ACAGAAATTTATAGTACTCCGTGATCT 58.085 33.333 0.00 0.00 0.00 2.75
7011 7416 9.640963 ATTTATAGTACTCCGTGATCTAAATGC 57.359 33.333 0.00 0.00 0.00 3.56
7012 7417 6.902771 ATAGTACTCCGTGATCTAAATGCT 57.097 37.500 0.00 0.00 0.00 3.79
7013 7418 5.189659 AGTACTCCGTGATCTAAATGCTC 57.810 43.478 0.00 0.00 0.00 4.26
7014 7419 4.890581 AGTACTCCGTGATCTAAATGCTCT 59.109 41.667 0.00 0.00 0.00 4.09
7015 7420 4.744795 ACTCCGTGATCTAAATGCTCTT 57.255 40.909 0.00 0.00 0.00 2.85
7016 7421 5.854010 ACTCCGTGATCTAAATGCTCTTA 57.146 39.130 0.00 0.00 0.00 2.10
7017 7422 6.412362 ACTCCGTGATCTAAATGCTCTTAT 57.588 37.500 0.00 0.00 0.00 1.73
7018 7423 7.526142 ACTCCGTGATCTAAATGCTCTTATA 57.474 36.000 0.00 0.00 0.00 0.98
7019 7424 8.128322 ACTCCGTGATCTAAATGCTCTTATAT 57.872 34.615 0.00 0.00 0.00 0.86
7020 7425 8.589338 ACTCCGTGATCTAAATGCTCTTATATT 58.411 33.333 0.00 0.00 0.00 1.28
7021 7426 9.429359 CTCCGTGATCTAAATGCTCTTATATTT 57.571 33.333 0.00 0.00 0.00 1.40
7022 7427 9.424319 TCCGTGATCTAAATGCTCTTATATTTC 57.576 33.333 0.00 0.00 0.00 2.17
7023 7428 9.429359 CCGTGATCTAAATGCTCTTATATTTCT 57.571 33.333 0.00 0.00 0.00 2.52
7053 7458 9.793252 CAGAGAAAGTAATATTTTTGGGACATG 57.207 33.333 0.00 0.00 39.30 3.21
7117 7527 3.917380 TGCAAATTATCAAAGGTTTCGCG 59.083 39.130 0.00 0.00 0.00 5.87
7133 7544 8.827177 AGGTTTCGCGATTTGATATCTTTATA 57.173 30.769 10.88 0.00 0.00 0.98
7166 7577 8.703604 TTTTCTACTACTTTCTTCGATCCATG 57.296 34.615 0.00 0.00 0.00 3.66
7168 7579 7.028926 TCTACTACTTTCTTCGATCCATGTC 57.971 40.000 0.00 0.00 0.00 3.06
7225 7637 8.857216 CATTTTGAGCTAAAAAGCAGTTAGATG 58.143 33.333 14.34 1.47 41.29 2.90
7226 7638 5.551760 TGAGCTAAAAAGCAGTTAGATGC 57.448 39.130 0.00 0.00 46.88 3.91
7246 7658 0.605083 AAGGCTGGCTAAAAAGCAGC 59.395 50.000 3.41 0.00 41.36 5.25
7255 7667 4.876107 TGGCTAAAAAGCAGCTAGATGTAC 59.124 41.667 10.15 0.00 39.09 2.90
7315 7728 6.370994 AGAAAGATGACAATGAGACACATGAC 59.629 38.462 0.00 0.00 39.39 3.06
7316 7729 4.511527 AGATGACAATGAGACACATGACC 58.488 43.478 0.00 0.00 39.39 4.02
7317 7730 4.224594 AGATGACAATGAGACACATGACCT 59.775 41.667 0.00 0.00 39.39 3.85
7318 7731 4.356405 TGACAATGAGACACATGACCTT 57.644 40.909 0.00 0.00 39.39 3.50
7319 7732 4.717877 TGACAATGAGACACATGACCTTT 58.282 39.130 0.00 0.00 39.39 3.11
7320 7733 5.132502 TGACAATGAGACACATGACCTTTT 58.867 37.500 0.00 0.00 39.39 2.27
7321 7734 5.593909 TGACAATGAGACACATGACCTTTTT 59.406 36.000 0.00 0.00 39.39 1.94
7349 7762 5.928976 TGGGTATTAGACACATGAATCAGG 58.071 41.667 0.00 0.00 36.16 3.86
7350 7763 5.665360 TGGGTATTAGACACATGAATCAGGA 59.335 40.000 0.58 0.00 36.16 3.86
7351 7764 6.183361 TGGGTATTAGACACATGAATCAGGAG 60.183 42.308 0.58 0.00 36.16 3.69
7352 7765 6.226787 GGTATTAGACACATGAATCAGGAGG 58.773 44.000 0.58 0.00 0.00 4.30
7353 7766 4.760530 TTAGACACATGAATCAGGAGGG 57.239 45.455 0.58 0.00 0.00 4.30
7354 7767 1.842562 AGACACATGAATCAGGAGGGG 59.157 52.381 0.58 0.00 0.00 4.79
7355 7768 0.257039 ACACATGAATCAGGAGGGGC 59.743 55.000 0.58 0.00 0.00 5.80
7356 7769 0.466922 CACATGAATCAGGAGGGGCC 60.467 60.000 0.58 0.00 0.00 5.80
7357 7770 1.228063 CATGAATCAGGAGGGGCCG 60.228 63.158 0.00 0.00 43.43 6.13
7358 7771 2.455565 ATGAATCAGGAGGGGCCGG 61.456 63.158 0.00 0.00 43.43 6.13
7359 7772 3.090532 GAATCAGGAGGGGCCGGT 61.091 66.667 1.90 0.00 43.43 5.28
7360 7773 3.406595 GAATCAGGAGGGGCCGGTG 62.407 68.421 1.90 0.00 43.43 4.94
7378 7791 3.737172 GGCGGCACCACACATGAC 61.737 66.667 3.07 0.00 38.86 3.06
7379 7792 3.737172 GCGGCACCACACATGACC 61.737 66.667 0.00 0.00 0.00 4.02
7380 7793 3.422303 CGGCACCACACATGACCG 61.422 66.667 0.00 0.00 32.96 4.79
7381 7794 2.281484 GGCACCACACATGACCGT 60.281 61.111 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.564709 ACACTCGTGTCAGTACAAGTATTA 57.435 37.500 0.00 0.00 40.24 0.98
24 25 5.109662 TGAGAGAGTAACTTCAACACTCG 57.890 43.478 0.00 0.00 42.80 4.18
26 27 7.231722 AGTGTATGAGAGAGTAACTTCAACACT 59.768 37.037 0.00 0.00 36.05 3.55
118 121 7.716799 TGGGCAAAGTTCAATTAATATGAGT 57.283 32.000 0.00 0.00 0.00 3.41
202 205 6.238814 CCTTGTTATACCGTTTTGACTTGGTT 60.239 38.462 0.00 0.00 35.93 3.67
215 218 3.181397 CACACGTACCCTTGTTATACCG 58.819 50.000 0.00 0.00 0.00 4.02
216 219 3.524541 CCACACGTACCCTTGTTATACC 58.475 50.000 0.00 0.00 0.00 2.73
217 220 2.931969 GCCACACGTACCCTTGTTATAC 59.068 50.000 0.00 0.00 0.00 1.47
218 221 2.833338 AGCCACACGTACCCTTGTTATA 59.167 45.455 0.00 0.00 0.00 0.98
219 222 1.626825 AGCCACACGTACCCTTGTTAT 59.373 47.619 0.00 0.00 0.00 1.89
220 223 1.050204 AGCCACACGTACCCTTGTTA 58.950 50.000 0.00 0.00 0.00 2.41
221 224 1.001633 CTAGCCACACGTACCCTTGTT 59.998 52.381 0.00 0.00 0.00 2.83
222 225 0.606604 CTAGCCACACGTACCCTTGT 59.393 55.000 0.00 0.00 0.00 3.16
223 226 0.739813 GCTAGCCACACGTACCCTTG 60.740 60.000 2.29 0.00 0.00 3.61
231 244 2.412089 GAGTTAAGTTGCTAGCCACACG 59.588 50.000 20.04 0.00 0.00 4.49
248 261 8.097038 TGAAGCAGAGTAGTAAATTCATGAGTT 58.903 33.333 0.00 0.00 0.00 3.01
250 263 7.763528 ACTGAAGCAGAGTAGTAAATTCATGAG 59.236 37.037 0.82 0.00 35.18 2.90
251 264 7.547019 CACTGAAGCAGAGTAGTAAATTCATGA 59.453 37.037 0.82 0.00 35.18 3.07
252 265 7.332926 ACACTGAAGCAGAGTAGTAAATTCATG 59.667 37.037 0.82 0.00 33.87 3.07
253 266 7.390027 ACACTGAAGCAGAGTAGTAAATTCAT 58.610 34.615 0.82 0.00 33.87 2.57
262 275 6.844696 TTTTGTAACACTGAAGCAGAGTAG 57.155 37.500 0.82 0.00 34.48 2.57
321 354 9.610705 TGACAATTCCTGAAAATTTCATCAAAA 57.389 25.926 9.02 2.48 39.30 2.44
360 402 4.214980 CAACACACCTTCTGTTGTGATC 57.785 45.455 8.64 0.00 42.37 2.92
368 410 2.412870 TCGCATACAACACACCTTCTG 58.587 47.619 0.00 0.00 0.00 3.02
369 411 2.831685 TCGCATACAACACACCTTCT 57.168 45.000 0.00 0.00 0.00 2.85
373 415 3.782046 AGAGTATCGCATACAACACACC 58.218 45.455 8.40 0.00 42.67 4.16
594 645 9.730420 TTGCTTTGTTTACTTTCAGACTTTATC 57.270 29.630 0.00 0.00 0.00 1.75
639 697 2.223572 GGGATTTTGATTACTGGCAGCG 60.224 50.000 15.89 0.00 0.00 5.18
656 714 0.399949 TCCGTTAGCTGGATGGGGAT 60.400 55.000 0.00 0.00 0.00 3.85
727 793 2.283809 CAGGGGAGGGGAGACGAT 59.716 66.667 0.00 0.00 0.00 3.73
728 794 3.273654 ACAGGGGAGGGGAGACGA 61.274 66.667 0.00 0.00 0.00 4.20
729 795 2.760385 GACAGGGGAGGGGAGACG 60.760 72.222 0.00 0.00 0.00 4.18
730 796 1.382009 GAGACAGGGGAGGGGAGAC 60.382 68.421 0.00 0.00 0.00 3.36
791 861 1.629861 CCGGGGTTTTTACCTGTCCTA 59.370 52.381 0.00 0.00 32.26 2.94
795 865 0.845337 TGTCCGGGGTTTTTACCTGT 59.155 50.000 0.00 0.00 32.26 4.00
976 1067 1.364171 CCGCAACCCTAGATCTCGG 59.636 63.158 6.30 6.30 0.00 4.63
1198 1297 4.785453 CAGAACCAGAGCCCGGCC 62.785 72.222 5.55 0.00 0.00 6.13
1205 1304 1.151668 CAAGAACGGCAGAACCAGAG 58.848 55.000 0.00 0.00 39.03 3.35
1234 1333 0.962855 GAAGCCCCAGAAAGACTGCC 60.963 60.000 0.00 0.00 44.52 4.85
1262 1386 1.096416 ACTAACGCTCCTTCTCTCCG 58.904 55.000 0.00 0.00 0.00 4.63
1266 1390 3.314541 TTCCAACTAACGCTCCTTCTC 57.685 47.619 0.00 0.00 0.00 2.87
1267 1391 3.557264 CCTTTCCAACTAACGCTCCTTCT 60.557 47.826 0.00 0.00 0.00 2.85
1269 1393 2.370849 TCCTTTCCAACTAACGCTCCTT 59.629 45.455 0.00 0.00 0.00 3.36
1270 1394 1.975680 TCCTTTCCAACTAACGCTCCT 59.024 47.619 0.00 0.00 0.00 3.69
1272 1396 4.034163 GCTAATCCTTTCCAACTAACGCTC 59.966 45.833 0.00 0.00 0.00 5.03
1273 1397 3.939592 GCTAATCCTTTCCAACTAACGCT 59.060 43.478 0.00 0.00 0.00 5.07
1274 1398 3.242316 CGCTAATCCTTTCCAACTAACGC 60.242 47.826 0.00 0.00 0.00 4.84
1277 1401 5.183228 CCTTCGCTAATCCTTTCCAACTAA 58.817 41.667 0.00 0.00 0.00 2.24
1278 1402 4.766375 CCTTCGCTAATCCTTTCCAACTA 58.234 43.478 0.00 0.00 0.00 2.24
1279 1403 3.610911 CCTTCGCTAATCCTTTCCAACT 58.389 45.455 0.00 0.00 0.00 3.16
1280 1404 2.097629 GCCTTCGCTAATCCTTTCCAAC 59.902 50.000 0.00 0.00 0.00 3.77
1281 1405 2.365582 GCCTTCGCTAATCCTTTCCAA 58.634 47.619 0.00 0.00 0.00 3.53
1282 1406 1.742411 CGCCTTCGCTAATCCTTTCCA 60.742 52.381 0.00 0.00 0.00 3.53
1283 1407 0.938008 CGCCTTCGCTAATCCTTTCC 59.062 55.000 0.00 0.00 0.00 3.13
1302 1426 4.043200 GAAACCACGCAGGGCAGC 62.043 66.667 0.00 0.00 43.89 5.25
1303 1427 1.898574 AAGAAACCACGCAGGGCAG 60.899 57.895 0.00 0.00 43.89 4.85
1304 1428 2.192861 CAAGAAACCACGCAGGGCA 61.193 57.895 0.00 0.00 43.89 5.36
1305 1429 2.644992 CAAGAAACCACGCAGGGC 59.355 61.111 0.00 0.00 43.89 5.19
1306 1430 2.919494 GCCAAGAAACCACGCAGGG 61.919 63.158 0.00 0.00 43.89 4.45
1307 1431 2.644992 GCCAAGAAACCACGCAGG 59.355 61.111 0.00 0.00 45.67 4.85
1397 1522 0.765510 AGGAACCAAGAAACGAGGCT 59.234 50.000 0.00 0.00 0.00 4.58
1448 1582 1.314412 CAAAACGACGCATTTCATCGC 59.686 47.619 0.00 0.00 39.47 4.58
1493 1629 0.889306 GCCTACGACAGTCAACTCCT 59.111 55.000 0.41 0.00 0.00 3.69
1506 1642 4.818534 ATCTGCAAAATACATGCCTACG 57.181 40.909 0.00 0.00 43.16 3.51
1515 1651 9.476202 AACAAAGAAACCTAATCTGCAAAATAC 57.524 29.630 0.00 0.00 0.00 1.89
1573 1709 0.875059 GCCAAGGAAGAAGAACCACG 59.125 55.000 0.00 0.00 0.00 4.94
1574 1710 1.609072 GTGCCAAGGAAGAAGAACCAC 59.391 52.381 0.00 0.00 0.00 4.16
1583 1719 2.058829 AACGCGTTGTGCCAAGGAAG 62.059 55.000 26.00 6.80 42.08 3.46
1703 1856 9.562583 GAATCTAATTCTATTACCGAGCTACAG 57.437 37.037 0.00 0.00 36.37 2.74
1748 1903 6.292542 CCAGTTCTATTGTGATCAGCGTAATG 60.293 42.308 0.00 0.00 0.00 1.90
1760 1915 4.177165 TGCAAATGCCAGTTCTATTGTG 57.823 40.909 2.46 0.00 41.18 3.33
1805 1961 2.887568 GCACGGGTCGATGCTGAG 60.888 66.667 1.49 0.00 38.84 3.35
1816 1972 1.804396 TTGCACCAAATCTGCACGGG 61.804 55.000 0.00 0.00 44.32 5.28
1836 1992 6.918022 AGACTAAGAAAATGTTTGCCGAAAAG 59.082 34.615 0.00 0.00 0.00 2.27
1841 1997 6.899114 AGTAAGACTAAGAAAATGTTTGCCG 58.101 36.000 0.00 0.00 0.00 5.69
1927 2083 6.127423 GCAGTTAGGTCTATGAGACAAAGGTA 60.127 42.308 8.77 0.00 46.79 3.08
1952 2110 6.238897 TAGGAAACTTTGGTACAATGTTGCTG 60.239 38.462 14.56 0.00 43.89 4.41
1954 2112 5.918576 GTAGGAAACTTTGGTACAATGTTGC 59.081 40.000 12.14 10.63 43.89 4.17
1985 2143 4.070716 CAGATGCAGGGGATGAAAGTATC 58.929 47.826 0.00 0.00 0.00 2.24
1997 2155 1.077930 CCTCCACACAGATGCAGGG 60.078 63.158 0.00 0.00 0.00 4.45
2049 2211 5.692115 TCCTAGAACATATTGAGCAACCA 57.308 39.130 0.00 0.00 0.00 3.67
2066 2228 9.198475 TCTAACTTAATGGTTCCTACTTCCTAG 57.802 37.037 0.00 0.00 0.00 3.02
2148 2398 7.332926 CCAAACAGGATAGCTTACTGCATATAG 59.667 40.741 10.72 0.00 42.03 1.31
2156 2406 4.010349 GTTGCCAAACAGGATAGCTTACT 58.990 43.478 0.00 0.00 41.22 2.24
2175 2426 2.607187 GTCAGAGGTATGTGACGGTTG 58.393 52.381 0.00 0.00 39.61 3.77
2494 2746 8.597662 TTAGTTGTGACAGGTTATTACAGAAC 57.402 34.615 0.00 0.00 35.83 3.01
2531 2783 3.313526 CCATCTTTGACGAATCCATGGAC 59.686 47.826 18.99 4.15 32.51 4.02
2538 2790 9.013490 CAATTTAATGTCCATCTTTGACGAATC 57.987 33.333 0.00 0.00 35.46 2.52
2578 2830 5.424121 AACTCAAGGTTTCACATTCTTCG 57.576 39.130 0.00 0.00 33.90 3.79
2791 3048 2.957680 TGCTTCAGCTGATTTGGTTTCA 59.042 40.909 19.04 4.20 42.66 2.69
3042 3299 9.091220 ACCCCAATTTATATACTGAGAGACTAC 57.909 37.037 0.00 0.00 0.00 2.73
3141 3484 9.906660 ATACTCGATTAAGATAGCAAAGAAGAG 57.093 33.333 0.00 0.00 0.00 2.85
3157 3500 6.801862 CGTATCTGCAATGACATACTCGATTA 59.198 38.462 0.00 0.00 0.00 1.75
3178 3521 3.713826 TCCTTTTCTTTGGCCTCGTAT 57.286 42.857 3.32 0.00 0.00 3.06
3181 3524 5.278022 GCTAATATCCTTTTCTTTGGCCTCG 60.278 44.000 3.32 0.00 0.00 4.63
3280 3623 7.579761 ATTTTCATCCCTCTGATTAAGAAGC 57.420 36.000 0.00 0.00 33.37 3.86
3436 3779 4.289672 ACAACACATACTTCCTCCCTTGAT 59.710 41.667 0.00 0.00 0.00 2.57
3455 3798 8.257166 GCTAACAAAACGATCAGTAAAAACAAC 58.743 33.333 0.00 0.00 0.00 3.32
3482 3825 6.478344 CCGCCATTTTAGCAATAAATAAAGCA 59.522 34.615 0.00 0.00 0.00 3.91
3655 3998 9.905713 TTAGAAGAGGTATAAACTCATTTGCAT 57.094 29.630 8.05 0.00 37.43 3.96
3805 4148 1.540707 GTCCTCTTCGTCTCCGTTTCT 59.459 52.381 0.00 0.00 35.01 2.52
3810 4153 1.914634 CAATGTCCTCTTCGTCTCCG 58.085 55.000 0.00 0.00 0.00 4.63
3865 4208 2.027837 GTCCCTTTGAGCAAATGCCAAT 60.028 45.455 0.94 0.00 43.38 3.16
3996 4339 5.241285 TCTTTTTGCAGCTCAATGTATGACA 59.759 36.000 0.00 0.00 34.12 3.58
4099 4442 2.088950 CAAGATTTTGCTGGGCTTGG 57.911 50.000 0.00 0.00 34.00 3.61
4222 4565 2.495155 TTTCTGCTTGCAGCCTATCA 57.505 45.000 16.91 0.00 41.51 2.15
4291 4634 2.106511 TCTGGCAGCTTCCTTTTGTAGT 59.893 45.455 10.34 0.00 0.00 2.73
4325 4668 8.815565 TTGAGATACTCTGTCATTACTCTTCT 57.184 34.615 0.00 0.00 0.00 2.85
4444 4787 5.733676 TGTTCTTGCTGCATCTTACTCATA 58.266 37.500 1.84 0.00 0.00 2.15
4771 5114 6.524101 TTATTAAGGGCTTCAATGGTGTTC 57.476 37.500 0.00 0.00 0.00 3.18
4959 5329 1.125093 TTCGCCACAAGGAAGGAGGA 61.125 55.000 0.00 0.00 36.89 3.71
5009 5379 2.958355 TCCTTTCAAGAAGCTTTGGTGG 59.042 45.455 0.00 0.11 0.00 4.61
5169 5539 2.143122 TGATGTCAGCAGTTTTCCGAC 58.857 47.619 0.00 0.00 0.00 4.79
5215 5585 2.912956 AGGTATTTCTCCAGCTTGGTCA 59.087 45.455 0.00 0.00 39.03 4.02
5246 5616 7.595130 CCTTTTCTTACTAACTTTTGCACCATC 59.405 37.037 0.00 0.00 0.00 3.51
5261 5631 9.720769 TGAGAACGAATAATTCCTTTTCTTACT 57.279 29.630 0.00 0.00 0.00 2.24
5280 5650 6.045318 ACTTCACTTGGATCATATGAGAACG 58.955 40.000 11.78 1.50 0.00 3.95
5284 5654 8.517878 ACAAAAACTTCACTTGGATCATATGAG 58.482 33.333 11.78 0.00 0.00 2.90
5304 5674 1.202830 TCCGCCTTGGCTCTACAAAAA 60.203 47.619 10.12 0.00 37.80 1.94
5307 5677 0.036388 CTTCCGCCTTGGCTCTACAA 60.036 55.000 10.12 0.00 37.80 2.41
5308 5678 1.192146 ACTTCCGCCTTGGCTCTACA 61.192 55.000 10.12 0.00 37.80 2.74
5309 5679 0.822164 TACTTCCGCCTTGGCTCTAC 59.178 55.000 10.12 0.00 37.80 2.59
5314 5684 0.891904 TTTGGTACTTCCGCCTTGGC 60.892 55.000 0.75 0.75 39.52 4.52
5366 5736 6.313744 AGCATACCAGTTGTTCAAAGTAAC 57.686 37.500 0.00 0.00 0.00 2.50
5735 6117 9.116067 AGTAAGCAAAGTTTATTACAACACTCA 57.884 29.630 18.16 0.00 31.90 3.41
5758 6140 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5759 6141 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5760 6142 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5761 6143 5.397109 GGACTTATATTTTGGAACGGAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
5762 6144 4.820173 GGACTTATATTTTGGAACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
5763 6145 5.681639 AGGACTTATATTTTGGAACGGAGG 58.318 41.667 0.00 0.00 0.00 4.30
5764 6146 7.625828 AAAGGACTTATATTTTGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
5765 6147 9.169592 CTAAAAGGACTTATATTTTGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
5766 6148 9.169592 TCTAAAAGGACTTATATTTTGGAACGG 57.830 33.333 0.00 0.00 32.62 4.44
5779 6161 8.705594 CCATACTGGAATCTCTAAAAGGACTTA 58.294 37.037 0.00 0.00 40.96 2.24
5780 6162 7.403231 TCCATACTGGAATCTCTAAAAGGACTT 59.597 37.037 0.00 0.00 45.00 3.01
5781 6163 6.903534 TCCATACTGGAATCTCTAAAAGGACT 59.096 38.462 0.00 0.00 45.00 3.85
5782 6164 7.125792 TCCATACTGGAATCTCTAAAAGGAC 57.874 40.000 0.00 0.00 45.00 3.85
5801 6183 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
5802 6184 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
5803 6185 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
5804 6186 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
5805 6187 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
5806 6188 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
5807 6189 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
5808 6190 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
5809 6191 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
5810 6192 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
5811 6193 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
5812 6194 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
5813 6195 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
5814 6196 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
5815 6197 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
5816 6198 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5847 6229 8.725256 AGGGACTACATACGGATGTATAGATAT 58.275 37.037 20.64 3.69 45.42 1.63
5848 6230 8.098963 AGGGACTACATACGGATGTATAGATA 57.901 38.462 20.64 0.00 45.42 1.98
5849 6231 6.971340 AGGGACTACATACGGATGTATAGAT 58.029 40.000 20.64 7.25 45.42 1.98
5850 6232 6.384342 AGGGACTACATACGGATGTATAGA 57.616 41.667 20.64 0.52 45.42 1.98
5851 6233 6.766944 CCTAGGGACTACATACGGATGTATAG 59.233 46.154 20.64 17.04 45.42 1.31
5852 6234 6.353342 CCCTAGGGACTACATACGGATGTATA 60.353 46.154 24.99 9.08 41.95 1.47
5853 6235 5.507637 CCTAGGGACTACATACGGATGTAT 58.492 45.833 20.64 11.04 45.42 2.29
5854 6236 4.263639 CCCTAGGGACTACATACGGATGTA 60.264 50.000 24.99 19.32 41.95 2.29
5855 6237 3.499926 CCCTAGGGACTACATACGGATGT 60.500 52.174 24.99 19.12 42.77 3.06
5856 6238 3.090037 CCCTAGGGACTACATACGGATG 58.910 54.545 24.99 5.94 41.75 3.51
5857 6239 2.991713 TCCCTAGGGACTACATACGGAT 59.008 50.000 27.73 0.00 41.75 4.18
5858 6240 2.421725 TCCCTAGGGACTACATACGGA 58.578 52.381 27.73 0.00 41.75 4.69
5859 6241 2.965671 TCCCTAGGGACTACATACGG 57.034 55.000 27.73 0.00 41.75 4.02
5860 6242 5.078256 AGATTTCCCTAGGGACTACATACG 58.922 45.833 31.18 0.00 45.11 3.06
5861 6243 6.316513 AGAGATTTCCCTAGGGACTACATAC 58.683 44.000 31.18 17.14 45.11 2.39
5862 6244 6.547396 AGAGATTTCCCTAGGGACTACATA 57.453 41.667 31.18 12.11 45.11 2.29
5863 6245 5.426325 AGAGATTTCCCTAGGGACTACAT 57.574 43.478 31.18 18.84 45.11 2.29
5864 6246 4.901785 AGAGATTTCCCTAGGGACTACA 57.098 45.455 31.18 13.37 45.11 2.74
5865 6247 7.672122 TTTTAGAGATTTCCCTAGGGACTAC 57.328 40.000 31.18 21.83 45.11 2.73
5866 6248 8.127038 TCTTTTTAGAGATTTCCCTAGGGACTA 58.873 37.037 31.18 23.06 45.11 2.59
5867 6249 6.966461 TCTTTTTAGAGATTTCCCTAGGGACT 59.034 38.462 31.18 23.56 45.11 3.85
5868 6250 7.049133 GTCTTTTTAGAGATTTCCCTAGGGAC 58.951 42.308 31.18 19.00 45.11 4.46
5869 6251 6.966461 AGTCTTTTTAGAGATTTCCCTAGGGA 59.034 38.462 27.73 27.73 43.52 4.20
5870 6252 7.201702 AGTCTTTTTAGAGATTTCCCTAGGG 57.798 40.000 23.22 23.22 0.00 3.53
5890 6272 9.495382 ACTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
5899 6281 9.886132 GAATAACATACTCCCTCTGTTTCTAAA 57.114 33.333 0.00 0.00 35.00 1.85
5900 6282 9.268282 AGAATAACATACTCCCTCTGTTTCTAA 57.732 33.333 0.00 0.00 35.00 2.10
5901 6283 8.840200 AGAATAACATACTCCCTCTGTTTCTA 57.160 34.615 0.00 0.00 35.00 2.10
5902 6284 7.741554 AGAATAACATACTCCCTCTGTTTCT 57.258 36.000 0.00 0.00 35.00 2.52
5903 6285 7.654116 GCTAGAATAACATACTCCCTCTGTTTC 59.346 40.741 0.00 0.00 35.00 2.78
5904 6286 7.345914 AGCTAGAATAACATACTCCCTCTGTTT 59.654 37.037 0.00 0.00 35.00 2.83
5905 6287 6.841755 AGCTAGAATAACATACTCCCTCTGTT 59.158 38.462 0.00 0.00 37.00 3.16
5906 6288 6.377912 AGCTAGAATAACATACTCCCTCTGT 58.622 40.000 0.00 0.00 0.00 3.41
5907 6289 6.719370 AGAGCTAGAATAACATACTCCCTCTG 59.281 42.308 0.00 0.00 0.00 3.35
5908 6290 6.858941 AGAGCTAGAATAACATACTCCCTCT 58.141 40.000 0.00 0.00 0.00 3.69
5909 6291 7.533289 AAGAGCTAGAATAACATACTCCCTC 57.467 40.000 0.00 0.00 0.00 4.30
5910 6292 7.175293 CGTAAGAGCTAGAATAACATACTCCCT 59.825 40.741 0.00 0.00 43.02 4.20
5911 6293 7.040548 ACGTAAGAGCTAGAATAACATACTCCC 60.041 40.741 0.00 0.00 43.62 4.30
5912 6294 7.873910 ACGTAAGAGCTAGAATAACATACTCC 58.126 38.462 0.00 0.00 43.62 3.85
5913 6295 8.776470 AGACGTAAGAGCTAGAATAACATACTC 58.224 37.037 0.00 0.00 43.62 2.59
5914 6296 8.680039 AGACGTAAGAGCTAGAATAACATACT 57.320 34.615 0.00 0.00 43.62 2.12
5915 6297 9.171701 CAAGACGTAAGAGCTAGAATAACATAC 57.828 37.037 0.00 0.00 43.62 2.39
5968 6350 9.077885 TCTTGTTCAGCAGAAAATTAGGTAAAT 57.922 29.630 0.00 0.00 35.08 1.40
5995 6377 8.750298 CAGGATAGACTTGGAGTTTAGAGTTAA 58.250 37.037 0.00 0.00 0.00 2.01
6003 6385 2.912956 TGGCAGGATAGACTTGGAGTTT 59.087 45.455 0.00 0.00 0.00 2.66
6220 6607 6.523840 ACTGCAAAGGATAAAGCATCAAAAA 58.476 32.000 0.00 0.00 36.28 1.94
6261 6648 0.535780 TGCCTTCAAGTGCTCCAGTG 60.536 55.000 0.41 0.00 0.00 3.66
6357 6744 2.884012 TGTGATGAGAAAACGCCACAAT 59.116 40.909 0.00 0.00 32.44 2.71
6410 6798 0.459934 CAGCCTACAGTCAGCTCTGC 60.460 60.000 2.42 0.00 38.84 4.26
6639 7027 1.672441 CCCCCAATCAATTTGCACACG 60.672 52.381 0.00 0.00 33.73 4.49
6644 7032 2.168313 CCTACACCCCCAATCAATTTGC 59.832 50.000 0.00 0.00 33.73 3.68
6761 7155 2.353803 GCAAGACAACCATACGAGTCCT 60.354 50.000 0.00 0.00 0.00 3.85
6762 7156 2.000447 GCAAGACAACCATACGAGTCC 59.000 52.381 0.00 0.00 0.00 3.85
6798 7192 0.027716 GCAGCAGCATCAATCAGACG 59.972 55.000 0.00 0.00 41.58 4.18
6817 7211 2.417339 TCGAAGAAACGAGACCACAG 57.583 50.000 0.00 0.00 37.37 3.66
6825 7219 1.372499 CGGGTGCTCGAAGAAACGA 60.372 57.895 0.00 0.00 40.00 3.85
6826 7220 2.380410 CCGGGTGCTCGAAGAAACG 61.380 63.158 0.00 0.00 34.09 3.60
6853 7247 1.917303 GCAACAGTCAAAACAACACCG 59.083 47.619 0.00 0.00 0.00 4.94
6935 7329 0.899720 CTAACCTGACGTGGCCCTAA 59.100 55.000 0.00 0.00 0.00 2.69
6936 7330 0.040058 TCTAACCTGACGTGGCCCTA 59.960 55.000 0.00 0.00 0.00 3.53
6995 7400 8.994429 AATATAAGAGCATTTAGATCACGGAG 57.006 34.615 0.00 0.00 34.30 4.63
6996 7401 9.424319 GAAATATAAGAGCATTTAGATCACGGA 57.576 33.333 0.00 0.00 34.30 4.69
6997 7402 9.429359 AGAAATATAAGAGCATTTAGATCACGG 57.571 33.333 0.00 0.00 34.30 4.94
7026 7431 8.934023 TGTCCCAAAAATATTACTTTCTCTGT 57.066 30.769 0.00 0.00 0.00 3.41
7027 7432 9.793252 CATGTCCCAAAAATATTACTTTCTCTG 57.207 33.333 0.00 0.00 0.00 3.35
7028 7433 9.533831 ACATGTCCCAAAAATATTACTTTCTCT 57.466 29.630 0.00 0.00 0.00 3.10
7033 7438 9.303116 TGTGTACATGTCCCAAAAATATTACTT 57.697 29.630 0.00 0.00 0.00 2.24
7034 7439 8.871629 TGTGTACATGTCCCAAAAATATTACT 57.128 30.769 0.00 0.00 0.00 2.24
7092 7502 6.252441 CGCGAAACCTTTGATAATTTGCATAA 59.748 34.615 0.00 0.00 0.00 1.90
7095 7505 3.917380 CGCGAAACCTTTGATAATTTGCA 59.083 39.130 0.00 0.00 0.00 4.08
7102 7512 5.811399 ATCAAATCGCGAAACCTTTGATA 57.189 34.783 31.68 17.00 43.11 2.15
7133 7544 7.332182 CGAAGAAAGTAGTAGAAAAATGCTCCT 59.668 37.037 0.00 0.00 0.00 3.69
7147 7558 5.186021 AGTGACATGGATCGAAGAAAGTAGT 59.814 40.000 0.00 0.00 43.58 2.73
7166 7577 3.813529 ATTAAAGCAGCGACAAGTGAC 57.186 42.857 0.00 0.00 0.00 3.67
7168 7579 4.661993 TGTATTAAAGCAGCGACAAGTG 57.338 40.909 0.00 0.00 0.00 3.16
7225 7637 0.318120 TGCTTTTTAGCCAGCCTTGC 59.682 50.000 0.00 0.00 34.91 4.01
7226 7638 1.670967 GCTGCTTTTTAGCCAGCCTTG 60.671 52.381 0.62 0.00 34.91 3.61
7228 7640 0.251519 AGCTGCTTTTTAGCCAGCCT 60.252 50.000 8.10 0.00 42.07 4.58
7246 7658 2.795175 ATTGTCGGCCGTACATCTAG 57.205 50.000 27.15 0.00 0.00 2.43
7255 7667 2.724174 GAGAAAAACAAATTGTCGGCCG 59.276 45.455 22.12 22.12 0.00 6.13
7290 7703 6.370994 GTCATGTGTCTCATTGTCATCTTTCT 59.629 38.462 0.00 0.00 34.09 2.52
7321 7734 9.913310 TGATTCATGTGTCTAATACCCATAAAA 57.087 29.630 0.00 0.00 0.00 1.52
7322 7735 9.559732 CTGATTCATGTGTCTAATACCCATAAA 57.440 33.333 0.00 0.00 0.00 1.40
7323 7736 8.156820 CCTGATTCATGTGTCTAATACCCATAA 58.843 37.037 0.00 0.00 0.00 1.90
7324 7737 7.512402 TCCTGATTCATGTGTCTAATACCCATA 59.488 37.037 0.00 0.00 0.00 2.74
7325 7738 6.329986 TCCTGATTCATGTGTCTAATACCCAT 59.670 38.462 0.00 0.00 0.00 4.00
7326 7739 5.665360 TCCTGATTCATGTGTCTAATACCCA 59.335 40.000 0.00 0.00 0.00 4.51
7327 7740 6.174720 TCCTGATTCATGTGTCTAATACCC 57.825 41.667 0.00 0.00 0.00 3.69
7328 7741 6.226787 CCTCCTGATTCATGTGTCTAATACC 58.773 44.000 0.00 0.00 0.00 2.73
7329 7742 6.226787 CCCTCCTGATTCATGTGTCTAATAC 58.773 44.000 0.00 0.00 0.00 1.89
7330 7743 5.307976 CCCCTCCTGATTCATGTGTCTAATA 59.692 44.000 0.00 0.00 0.00 0.98
7331 7744 4.103785 CCCCTCCTGATTCATGTGTCTAAT 59.896 45.833 0.00 0.00 0.00 1.73
7332 7745 3.455910 CCCCTCCTGATTCATGTGTCTAA 59.544 47.826 0.00 0.00 0.00 2.10
7333 7746 3.041211 CCCCTCCTGATTCATGTGTCTA 58.959 50.000 0.00 0.00 0.00 2.59
7334 7747 1.842562 CCCCTCCTGATTCATGTGTCT 59.157 52.381 0.00 0.00 0.00 3.41
7335 7748 1.748591 GCCCCTCCTGATTCATGTGTC 60.749 57.143 0.00 0.00 0.00 3.67
7336 7749 0.257039 GCCCCTCCTGATTCATGTGT 59.743 55.000 0.00 0.00 0.00 3.72
7337 7750 0.466922 GGCCCCTCCTGATTCATGTG 60.467 60.000 0.00 0.00 0.00 3.21
7338 7751 1.925888 GGCCCCTCCTGATTCATGT 59.074 57.895 0.00 0.00 0.00 3.21
7339 7752 1.228063 CGGCCCCTCCTGATTCATG 60.228 63.158 0.00 0.00 0.00 3.07
7340 7753 2.455565 CCGGCCCCTCCTGATTCAT 61.456 63.158 0.00 0.00 0.00 2.57
7341 7754 3.089874 CCGGCCCCTCCTGATTCA 61.090 66.667 0.00 0.00 0.00 2.57
7342 7755 3.090532 ACCGGCCCCTCCTGATTC 61.091 66.667 0.00 0.00 0.00 2.52
7343 7756 3.411517 CACCGGCCCCTCCTGATT 61.412 66.667 0.00 0.00 0.00 2.57
7361 7774 3.737172 GTCATGTGTGGTGCCGCC 61.737 66.667 0.00 0.00 37.90 6.13
7362 7775 3.737172 GGTCATGTGTGGTGCCGC 61.737 66.667 0.00 0.00 0.00 6.53
7363 7776 3.422303 CGGTCATGTGTGGTGCCG 61.422 66.667 0.00 0.00 32.62 5.69
7364 7777 2.281484 ACGGTCATGTGTGGTGCC 60.281 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.