Multiple sequence alignment - TraesCS3D01G302300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G302300 chr3D 100.000 6169 0 0 1 6169 417165136 417158968 0.000000e+00 11393.0
1 TraesCS3D01G302300 chr3D 86.364 770 79 11 3250 4002 535744406 535745166 0.000000e+00 817.0
2 TraesCS3D01G302300 chr3D 92.708 96 7 0 3999 4094 535745217 535745312 8.340000e-29 139.0
3 TraesCS3D01G302300 chr3D 82.075 106 17 2 1758 1862 3825057 3824953 8.520000e-14 89.8
4 TraesCS3D01G302300 chr3A 88.982 3821 199 84 293 4002 533657633 533661342 0.000000e+00 4519.0
5 TraesCS3D01G302300 chr3A 87.275 2224 138 64 3999 6169 533661393 533663524 0.000000e+00 2405.0
6 TraesCS3D01G302300 chr3A 86.087 460 50 10 3546 4003 743897202 743896755 3.340000e-132 483.0
7 TraesCS3D01G302300 chr3A 94.949 297 15 0 1 297 65351481 65351185 3.370000e-127 466.0
8 TraesCS3D01G302300 chr3A 90.278 144 12 2 3866 4009 10028151 10028010 2.940000e-43 187.0
9 TraesCS3D01G302300 chr3A 83.333 90 8 6 5948 6033 57767709 57767795 6.630000e-10 76.8
10 TraesCS3D01G302300 chr3B 90.998 1944 104 30 293 2205 543471756 543469853 0.000000e+00 2555.0
11 TraesCS3D01G302300 chr3B 90.840 1965 81 32 3999 5947 543468175 543466294 0.000000e+00 2540.0
12 TraesCS3D01G302300 chr3B 94.502 1346 59 8 2660 4002 543469559 543468226 0.000000e+00 2061.0
13 TraesCS3D01G302300 chr3B 94.558 294 15 1 1 294 95172973 95173265 2.620000e-123 453.0
14 TraesCS3D01G302300 chr3B 88.462 260 11 4 2260 2506 543469839 543469586 4.680000e-76 296.0
15 TraesCS3D01G302300 chr3B 92.929 99 6 1 6072 6169 543466244 543466146 6.450000e-30 143.0
16 TraesCS3D01G302300 chr3B 84.337 83 9 4 5953 6033 183071167 183071247 1.840000e-10 78.7
17 TraesCS3D01G302300 chr2A 89.855 1449 113 12 2253 3673 621870098 621868656 0.000000e+00 1831.0
18 TraesCS3D01G302300 chr2A 87.052 502 42 11 4002 4493 621860526 621860038 4.200000e-151 545.0
19 TraesCS3D01G302300 chr2A 90.429 303 26 2 3702 4002 621860881 621860580 4.480000e-106 396.0
20 TraesCS3D01G302300 chr4D 87.366 744 78 9 3250 3985 19302941 19303676 0.000000e+00 839.0
21 TraesCS3D01G302300 chr4D 93.407 91 6 0 3999 4089 19303741 19303831 1.080000e-27 135.0
22 TraesCS3D01G302300 chr4D 87.143 70 6 3 5951 6018 448157059 448157127 6.630000e-10 76.8
23 TraesCS3D01G302300 chr4A 86.399 772 78 13 3250 4004 741259146 741258385 0.000000e+00 819.0
24 TraesCS3D01G302300 chr4A 86.107 763 88 11 3250 4002 738580398 738579644 0.000000e+00 806.0
25 TraesCS3D01G302300 chr4A 90.526 95 8 1 4000 4094 741258334 741258241 2.330000e-24 124.0
26 TraesCS3D01G302300 chr4A 89.583 96 10 0 4002 4097 738579590 738579495 8.400000e-24 122.0
27 TraesCS3D01G302300 chrUn 86.111 756 78 13 3266 4004 221213140 221213885 0.000000e+00 789.0
28 TraesCS3D01G302300 chrUn 90.526 95 8 1 4000 4094 221213936 221214029 2.330000e-24 124.0
29 TraesCS3D01G302300 chrUn 81.720 93 16 1 1758 1850 31931089 31931180 6.630000e-10 76.8
30 TraesCS3D01G302300 chr5D 85.895 631 56 12 1210 1840 46121080 46120483 5.210000e-180 641.0
31 TraesCS3D01G302300 chr5D 83.285 347 58 0 4341 4687 478163942 478163596 2.770000e-83 320.0
32 TraesCS3D01G302300 chr5D 76.117 515 96 18 1321 1825 478166215 478165718 1.720000e-60 244.0
33 TraesCS3D01G302300 chr5D 79.147 211 24 8 1881 2090 196875034 196875225 1.800000e-25 128.0
34 TraesCS3D01G302300 chr5D 93.750 64 2 2 5952 6014 45177957 45178019 1.830000e-15 95.3
35 TraesCS3D01G302300 chr1B 78.082 949 181 24 2764 3692 573859975 573860916 5.360000e-160 575.0
36 TraesCS3D01G302300 chr1B 87.374 198 21 3 1666 1861 573859140 573859335 2.240000e-54 224.0
37 TraesCS3D01G302300 chr1B 82.239 259 31 7 1267 1510 573858708 573858966 6.270000e-50 209.0
38 TraesCS3D01G302300 chr1A 81.135 652 113 8 4324 4970 520573062 520573708 1.190000e-141 514.0
39 TraesCS3D01G302300 chr1A 77.019 644 83 35 1267 1861 520570327 520570954 6.010000e-80 309.0
40 TraesCS3D01G302300 chr1A 83.618 293 38 9 1371 1663 297845701 297845983 3.670000e-67 267.0
41 TraesCS3D01G302300 chr1D 80.723 664 114 11 4322 4978 424730664 424731320 7.140000e-139 505.0
42 TraesCS3D01G302300 chr1D 94.257 296 17 0 1 296 492905897 492906192 2.620000e-123 453.0
43 TraesCS3D01G302300 chr1D 76.279 645 86 38 1267 1861 424728051 424728678 1.310000e-71 281.0
44 TraesCS3D01G302300 chr1D 87.879 66 7 1 5954 6018 404832244 404832309 6.630000e-10 76.8
45 TraesCS3D01G302300 chr5B 95.946 296 12 0 1 296 442745055 442745350 1.200000e-131 481.0
46 TraesCS3D01G302300 chr5B 94.898 294 15 0 1 294 631783683 631783390 1.570000e-125 460.0
47 TraesCS3D01G302300 chr5B 94.257 296 17 0 1 296 273898107 273898402 2.620000e-123 453.0
48 TraesCS3D01G302300 chr5B 83.862 347 56 0 4341 4687 585752586 585752240 1.280000e-86 331.0
49 TraesCS3D01G302300 chr5B 75.977 512 102 17 1321 1825 585754751 585754254 1.720000e-60 244.0
50 TraesCS3D01G302300 chr2D 96.259 294 10 1 1 294 623305825 623306117 1.200000e-131 481.0
51 TraesCS3D01G302300 chr2D 89.205 176 17 2 3831 4005 152014935 152014761 1.040000e-52 219.0
52 TraesCS3D01G302300 chr7A 85.590 458 55 7 3546 4002 690713156 690713603 2.600000e-128 470.0
53 TraesCS3D01G302300 chr6B 94.352 301 16 1 1 300 445849612 445849312 1.570000e-125 460.0
54 TraesCS3D01G302300 chr7B 94.595 296 15 1 3 297 120455835 120456130 2.030000e-124 457.0
55 TraesCS3D01G302300 chr7B 89.231 65 7 0 5954 6018 128258866 128258802 1.430000e-11 82.4
56 TraesCS3D01G302300 chr5A 84.726 347 53 0 4341 4687 597290118 597289772 1.270000e-91 348.0
57 TraesCS3D01G302300 chr5A 92.000 125 7 3 1714 1835 37195272 37195148 8.220000e-39 172.0
58 TraesCS3D01G302300 chr4B 89.706 68 5 2 5953 6018 7807319 7807252 1.100000e-12 86.1
59 TraesCS3D01G302300 chr4B 84.932 73 10 1 5947 6018 92562907 92562835 8.580000e-09 73.1
60 TraesCS3D01G302300 chr7D 92.982 57 3 1 5951 6006 161541250 161541306 1.430000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G302300 chr3D 417158968 417165136 6168 True 11393.0 11393 100.0000 1 6169 1 chr3D.!!$R2 6168
1 TraesCS3D01G302300 chr3D 535744406 535745312 906 False 478.0 817 89.5360 3250 4094 2 chr3D.!!$F1 844
2 TraesCS3D01G302300 chr3A 533657633 533663524 5891 False 3462.0 4519 88.1285 293 6169 2 chr3A.!!$F2 5876
3 TraesCS3D01G302300 chr3B 543466146 543471756 5610 True 1519.0 2555 91.5462 293 6169 5 chr3B.!!$R1 5876
4 TraesCS3D01G302300 chr2A 621868656 621870098 1442 True 1831.0 1831 89.8550 2253 3673 1 chr2A.!!$R1 1420
5 TraesCS3D01G302300 chr2A 621860038 621860881 843 True 470.5 545 88.7405 3702 4493 2 chr2A.!!$R2 791
6 TraesCS3D01G302300 chr4D 19302941 19303831 890 False 487.0 839 90.3865 3250 4089 2 chr4D.!!$F2 839
7 TraesCS3D01G302300 chr4A 741258241 741259146 905 True 471.5 819 88.4625 3250 4094 2 chr4A.!!$R2 844
8 TraesCS3D01G302300 chr4A 738579495 738580398 903 True 464.0 806 87.8450 3250 4097 2 chr4A.!!$R1 847
9 TraesCS3D01G302300 chrUn 221213140 221214029 889 False 456.5 789 88.3185 3266 4094 2 chrUn.!!$F2 828
10 TraesCS3D01G302300 chr5D 46120483 46121080 597 True 641.0 641 85.8950 1210 1840 1 chr5D.!!$R1 630
11 TraesCS3D01G302300 chr5D 478163596 478166215 2619 True 282.0 320 79.7010 1321 4687 2 chr5D.!!$R2 3366
12 TraesCS3D01G302300 chr1B 573858708 573860916 2208 False 336.0 575 82.5650 1267 3692 3 chr1B.!!$F1 2425
13 TraesCS3D01G302300 chr1A 520570327 520573708 3381 False 411.5 514 79.0770 1267 4970 2 chr1A.!!$F2 3703
14 TraesCS3D01G302300 chr1D 424728051 424731320 3269 False 393.0 505 78.5010 1267 4978 2 chr1D.!!$F3 3711
15 TraesCS3D01G302300 chr5B 585752240 585754751 2511 True 287.5 331 79.9195 1321 4687 2 chr5B.!!$R2 3366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 686 0.337773 TCATGGAGGGAGTGAGAGCT 59.662 55.000 0.00 0.0 0.00 4.09 F
2416 2596 0.463833 CGGAGTGGAGTATTTGGGCC 60.464 60.000 0.00 0.0 0.00 5.80 F
2568 2749 0.035317 ACGCTGCTGTTGATTGAGGA 59.965 50.000 0.00 0.0 0.00 3.71 F
2575 2756 0.322366 TGTTGATTGAGGATGGCGCA 60.322 50.000 10.83 0.0 0.00 6.09 F
4336 5826 2.012673 CTACCTCTGTTGCAGATTGGC 58.987 52.381 0.00 0.0 39.92 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2689 0.096976 CGGCGGCTAAATGTGTCTTG 59.903 55.000 7.61 0.0 0.00 3.02 R
4308 5798 2.301870 TGCAACAGAGGTAGGTAACAGG 59.698 50.000 0.00 0.0 41.41 4.00 R
4468 5958 1.546773 GGAATGTAGCACACCACCCAA 60.547 52.381 0.00 0.0 0.00 4.12 R
4546 6036 2.904434 GTTCTCAAACAGGAGGTAGGGA 59.096 50.000 0.00 0.0 35.58 4.20 R
5605 7123 0.110056 CAGCAACAACAGTCCATCGC 60.110 55.000 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.347729 GACAATTTCGATTTGGTTGTAAAACT 57.652 30.769 11.83 0.00 32.01 2.66
26 27 9.453325 GACAATTTCGATTTGGTTGTAAAACTA 57.547 29.630 11.83 0.00 32.01 2.24
27 28 9.974980 ACAATTTCGATTTGGTTGTAAAACTAT 57.025 25.926 11.83 0.00 32.01 2.12
54 55 8.801882 TTTATTAGAGACAATTTCGATTGGGT 57.198 30.769 3.94 0.00 35.93 4.51
55 56 8.801882 TTATTAGAGACAATTTCGATTGGGTT 57.198 30.769 3.94 0.00 35.93 4.11
56 57 6.494893 TTAGAGACAATTTCGATTGGGTTG 57.505 37.500 3.94 0.25 35.93 3.77
57 58 4.398319 AGAGACAATTTCGATTGGGTTGT 58.602 39.130 3.94 3.12 35.93 3.32
58 59 5.556915 AGAGACAATTTCGATTGGGTTGTA 58.443 37.500 3.94 0.00 35.93 2.41
59 60 6.001460 AGAGACAATTTCGATTGGGTTGTAA 58.999 36.000 3.94 0.00 35.93 2.41
60 61 6.488683 AGAGACAATTTCGATTGGGTTGTAAA 59.511 34.615 3.94 0.00 35.93 2.01
61 62 7.013846 AGAGACAATTTCGATTGGGTTGTAAAA 59.986 33.333 3.94 0.00 35.93 1.52
62 63 6.921307 AGACAATTTCGATTGGGTTGTAAAAC 59.079 34.615 3.94 0.00 35.93 2.43
63 64 6.811954 ACAATTTCGATTGGGTTGTAAAACT 58.188 32.000 3.94 0.00 35.93 2.66
64 65 7.942990 ACAATTTCGATTGGGTTGTAAAACTA 58.057 30.769 3.94 0.00 35.93 2.24
65 66 8.581578 ACAATTTCGATTGGGTTGTAAAACTAT 58.418 29.630 3.94 0.00 35.93 2.12
66 67 9.418045 CAATTTCGATTGGGTTGTAAAACTATT 57.582 29.630 0.00 0.00 30.93 1.73
67 68 9.990360 AATTTCGATTGGGTTGTAAAACTATTT 57.010 25.926 0.00 0.00 30.93 1.40
68 69 9.990360 ATTTCGATTGGGTTGTAAAACTATTTT 57.010 25.926 0.00 0.00 30.93 1.82
103 104 9.723601 AACAATTAATATTTGGATGTGCAAACT 57.276 25.926 1.72 0.00 0.00 2.66
104 105 9.723601 ACAATTAATATTTGGATGTGCAAACTT 57.276 25.926 1.72 2.76 0.00 2.66
105 106 9.976255 CAATTAATATTTGGATGTGCAAACTTG 57.024 29.630 1.72 0.00 0.00 3.16
106 107 9.723601 AATTAATATTTGGATGTGCAAACTTGT 57.276 25.926 1.72 0.00 0.00 3.16
107 108 9.723601 ATTAATATTTGGATGTGCAAACTTGTT 57.276 25.926 1.72 0.00 0.00 2.83
108 109 9.553064 TTAATATTTGGATGTGCAAACTTGTTT 57.447 25.926 1.72 0.00 0.00 2.83
109 110 8.449251 AATATTTGGATGTGCAAACTTGTTTT 57.551 26.923 1.72 0.00 0.00 2.43
110 111 5.793026 TTTGGATGTGCAAACTTGTTTTC 57.207 34.783 0.00 0.00 0.00 2.29
111 112 4.462508 TGGATGTGCAAACTTGTTTTCA 57.537 36.364 0.00 0.00 0.00 2.69
112 113 5.021033 TGGATGTGCAAACTTGTTTTCAT 57.979 34.783 2.39 5.38 0.00 2.57
113 114 6.154203 TGGATGTGCAAACTTGTTTTCATA 57.846 33.333 2.39 0.78 0.00 2.15
114 115 6.757237 TGGATGTGCAAACTTGTTTTCATAT 58.243 32.000 7.52 7.52 0.00 1.78
115 116 6.645827 TGGATGTGCAAACTTGTTTTCATATG 59.354 34.615 11.19 0.00 0.00 1.78
116 117 6.867816 GGATGTGCAAACTTGTTTTCATATGA 59.132 34.615 11.19 0.00 0.00 2.15
117 118 7.384660 GGATGTGCAAACTTGTTTTCATATGAA 59.615 33.333 14.23 14.23 0.00 2.57
118 119 8.659925 ATGTGCAAACTTGTTTTCATATGAAA 57.340 26.923 23.86 23.86 41.77 2.69
135 136 8.313292 TCATATGAAAATATGGGCATTTTAGGC 58.687 33.333 1.98 0.00 38.04 3.93
141 142 3.220222 GGCATTTTAGGCCCTGGC 58.780 61.111 0.00 0.00 45.87 4.85
142 143 2.785425 GGCATTTTAGGCCCTGGCG 61.785 63.158 0.00 0.00 45.87 5.69
143 144 2.785425 GCATTTTAGGCCCTGGCGG 61.785 63.158 0.00 0.00 43.06 6.13
144 145 1.077068 CATTTTAGGCCCTGGCGGA 60.077 57.895 0.00 0.00 43.06 5.54
145 146 1.076995 ATTTTAGGCCCTGGCGGAC 60.077 57.895 0.00 0.00 42.00 4.79
158 159 4.418328 CGGACGGGATGGGGCAAA 62.418 66.667 0.00 0.00 0.00 3.68
159 160 2.754254 GGACGGGATGGGGCAAAC 60.754 66.667 0.00 0.00 0.00 2.93
160 161 3.131478 GACGGGATGGGGCAAACG 61.131 66.667 0.00 0.00 0.00 3.60
161 162 4.733542 ACGGGATGGGGCAAACGG 62.734 66.667 0.00 0.00 0.00 4.44
162 163 4.418328 CGGGATGGGGCAAACGGA 62.418 66.667 0.00 0.00 0.00 4.69
163 164 2.278738 GGGATGGGGCAAACGGAT 59.721 61.111 0.00 0.00 0.00 4.18
164 165 2.127232 GGGATGGGGCAAACGGATG 61.127 63.158 0.00 0.00 0.00 3.51
165 166 2.785425 GGATGGGGCAAACGGATGC 61.785 63.158 6.17 6.17 45.67 3.91
199 200 4.386951 CACGACCACCGCATCCCA 62.387 66.667 0.00 0.00 43.32 4.37
200 201 4.082523 ACGACCACCGCATCCCAG 62.083 66.667 0.00 0.00 43.32 4.45
201 202 4.838152 CGACCACCGCATCCCAGG 62.838 72.222 0.00 0.00 0.00 4.45
202 203 3.399181 GACCACCGCATCCCAGGA 61.399 66.667 0.00 0.00 0.00 3.86
203 204 3.682292 GACCACCGCATCCCAGGAC 62.682 68.421 0.00 0.00 0.00 3.85
204 205 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
205 206 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
206 207 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
207 208 4.864334 CCGCATCCCAGGACAGGC 62.864 72.222 0.00 0.00 0.00 4.85
208 209 4.864334 CGCATCCCAGGACAGGCC 62.864 72.222 0.00 0.00 0.00 5.19
209 210 4.512914 GCATCCCAGGACAGGCCC 62.513 72.222 0.00 0.00 37.37 5.80
210 211 4.181010 CATCCCAGGACAGGCCCG 62.181 72.222 0.00 0.00 37.37 6.13
215 216 4.394712 CAGGACAGGCCCGGACAC 62.395 72.222 0.73 0.00 37.37 3.67
218 219 4.736896 GACAGGCCCGGACACGAC 62.737 72.222 0.73 0.00 44.60 4.34
224 225 4.157120 CCCGGACACGACCCCATC 62.157 72.222 0.73 0.00 44.60 3.51
232 233 3.925090 CGACCCCATCGCCCTACC 61.925 72.222 0.00 0.00 45.52 3.18
233 234 3.557290 GACCCCATCGCCCTACCC 61.557 72.222 0.00 0.00 0.00 3.69
234 235 4.424867 ACCCCATCGCCCTACCCA 62.425 66.667 0.00 0.00 0.00 4.51
235 236 3.093835 CCCCATCGCCCTACCCAA 61.094 66.667 0.00 0.00 0.00 4.12
236 237 2.685534 CCCCATCGCCCTACCCAAA 61.686 63.158 0.00 0.00 0.00 3.28
237 238 1.152963 CCCATCGCCCTACCCAAAG 60.153 63.158 0.00 0.00 0.00 2.77
238 239 1.152963 CCATCGCCCTACCCAAAGG 60.153 63.158 0.00 0.00 40.04 3.11
251 252 1.467920 CCAAAGGGACAGAATCTGGC 58.532 55.000 15.38 11.91 39.10 4.85
258 259 0.449388 GACAGAATCTGGCCAAAGCG 59.551 55.000 15.38 0.00 41.24 4.68
259 260 0.962356 ACAGAATCTGGCCAAAGCGG 60.962 55.000 15.38 0.00 41.24 5.52
260 261 0.677731 CAGAATCTGGCCAAAGCGGA 60.678 55.000 7.01 0.00 41.24 5.54
275 276 2.357881 GGACGTCCGTTTGGGGTC 60.358 66.667 20.85 0.00 37.97 4.46
276 277 2.735857 GACGTCCGTTTGGGGTCG 60.736 66.667 3.51 0.00 38.68 4.79
277 278 3.504524 GACGTCCGTTTGGGGTCGT 62.505 63.158 3.51 3.71 44.56 4.34
278 279 3.039588 CGTCCGTTTGGGGTCGTG 61.040 66.667 0.00 0.00 36.01 4.35
279 280 3.351416 GTCCGTTTGGGGTCGTGC 61.351 66.667 0.00 0.00 36.01 5.34
280 281 4.973055 TCCGTTTGGGGTCGTGCG 62.973 66.667 0.00 0.00 36.01 5.34
283 284 3.656045 GTTTGGGGTCGTGCGGTG 61.656 66.667 0.00 0.00 0.00 4.94
284 285 4.939368 TTTGGGGTCGTGCGGTGG 62.939 66.667 0.00 0.00 0.00 4.61
288 289 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
289 290 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
290 291 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
291 292 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
302 303 3.372025 GGTGGAGTTGGCCTAATCAATCT 60.372 47.826 16.20 0.00 0.00 2.40
315 316 1.226211 CAATCTCGCCGCTGCTTTG 60.226 57.895 0.00 0.00 34.43 2.77
407 412 1.920325 TTGGGCAGGGAGTGAGAGG 60.920 63.158 0.00 0.00 0.00 3.69
410 415 0.399233 GGGCAGGGAGTGAGAGGTAT 60.399 60.000 0.00 0.00 0.00 2.73
413 418 2.111384 GCAGGGAGTGAGAGGTATTCA 58.889 52.381 0.00 0.00 0.00 2.57
438 448 6.592607 ACTTCGTCCGTGAATAAATGTACATT 59.407 34.615 15.47 15.47 0.00 2.71
520 532 7.973388 GCAACATTTATGGCACTGAATTAGTAA 59.027 33.333 0.00 0.00 37.60 2.24
549 561 7.858052 AGATTCGCTTTGAAATGTACTTTTG 57.142 32.000 11.15 0.00 40.71 2.44
641 653 8.630278 TTGACTTATCGCAAAGATAGAAGTAC 57.370 34.615 3.91 0.00 42.29 2.73
642 654 7.768240 TGACTTATCGCAAAGATAGAAGTACA 58.232 34.615 0.00 0.00 42.29 2.90
659 679 6.617371 AGAAGTACATTATTCATGGAGGGAGT 59.383 38.462 0.00 0.00 37.17 3.85
662 682 5.301835 ACATTATTCATGGAGGGAGTGAG 57.698 43.478 0.00 0.00 37.17 3.51
663 683 4.971282 ACATTATTCATGGAGGGAGTGAGA 59.029 41.667 0.00 0.00 37.17 3.27
664 684 5.071519 ACATTATTCATGGAGGGAGTGAGAG 59.928 44.000 0.00 0.00 37.17 3.20
665 685 1.198713 TTCATGGAGGGAGTGAGAGC 58.801 55.000 0.00 0.00 0.00 4.09
666 686 0.337773 TCATGGAGGGAGTGAGAGCT 59.662 55.000 0.00 0.00 0.00 4.09
667 687 1.570979 TCATGGAGGGAGTGAGAGCTA 59.429 52.381 0.00 0.00 0.00 3.32
668 688 1.686052 CATGGAGGGAGTGAGAGCTAC 59.314 57.143 0.00 0.00 0.00 3.58
709 729 1.711375 TCCACTCCTACTCACTCTGGT 59.289 52.381 0.00 0.00 0.00 4.00
710 730 1.821753 CCACTCCTACTCACTCTGGTG 59.178 57.143 0.00 0.00 44.23 4.17
740 760 2.283894 GGAACCAGGGGCCAAAGG 60.284 66.667 4.39 6.19 0.00 3.11
771 806 8.148351 TCTGAATTTTCTTCTCTTTTCTACGGA 58.852 33.333 0.00 0.00 0.00 4.69
896 936 3.178611 GATTGGATCCCCCGCCCT 61.179 66.667 9.90 0.00 37.93 5.19
959 1001 0.908198 CCTTCTTCCTCCCCTCACTG 59.092 60.000 0.00 0.00 0.00 3.66
961 1003 1.201429 TTCTTCCTCCCCTCACTGCC 61.201 60.000 0.00 0.00 0.00 4.85
1045 1096 2.672908 CTGTCTGCCTGCCATCCA 59.327 61.111 0.00 0.00 0.00 3.41
1112 1167 2.047179 GTCTTGGCGTCCACCTCC 60.047 66.667 0.00 0.00 30.78 4.30
1177 1246 2.592993 GGGGTCACAGCTACAGCCA 61.593 63.158 8.71 0.00 43.38 4.75
1178 1247 1.078848 GGGTCACAGCTACAGCCAG 60.079 63.158 0.00 0.00 43.38 4.85
1989 2133 1.353694 AGGAGGTGAGCTGCAGAAAAT 59.646 47.619 20.43 0.00 0.00 1.82
1991 2135 2.680339 GGAGGTGAGCTGCAGAAAATAC 59.320 50.000 20.43 8.11 0.00 1.89
2011 2157 9.594478 AAAATACAAAACGAATTTCCACTTCTT 57.406 25.926 0.00 0.00 0.00 2.52
2047 2193 2.373169 TCTGTGCCTGAAGGTGAAATCT 59.627 45.455 0.00 0.00 37.57 2.40
2075 2221 4.856801 CTGGGATTGGGCGTCGGG 62.857 72.222 0.00 0.00 0.00 5.14
2168 2314 5.164606 CCGAAAATTAACGGGTGGATAAG 57.835 43.478 13.25 0.00 44.59 1.73
2169 2315 4.877251 CCGAAAATTAACGGGTGGATAAGA 59.123 41.667 13.25 0.00 44.59 2.10
2170 2316 5.007332 CCGAAAATTAACGGGTGGATAAGAG 59.993 44.000 13.25 0.00 44.59 2.85
2171 2317 5.503520 CGAAAATTAACGGGTGGATAAGAGC 60.504 44.000 0.00 0.00 0.00 4.09
2172 2318 2.994186 TTAACGGGTGGATAAGAGCC 57.006 50.000 0.00 0.00 0.00 4.70
2174 2320 1.213296 AACGGGTGGATAAGAGCCAT 58.787 50.000 0.00 0.00 37.81 4.40
2175 2321 2.097110 ACGGGTGGATAAGAGCCATA 57.903 50.000 0.00 0.00 37.81 2.74
2176 2322 1.971357 ACGGGTGGATAAGAGCCATAG 59.029 52.381 0.00 0.00 37.81 2.23
2177 2323 1.971357 CGGGTGGATAAGAGCCATAGT 59.029 52.381 0.00 0.00 37.81 2.12
2178 2324 3.162666 CGGGTGGATAAGAGCCATAGTA 58.837 50.000 0.00 0.00 37.81 1.82
2179 2325 3.193691 CGGGTGGATAAGAGCCATAGTAG 59.806 52.174 0.00 0.00 37.81 2.57
2181 2327 4.417437 GGTGGATAAGAGCCATAGTAGGA 58.583 47.826 0.00 0.00 37.81 2.94
2205 2357 7.256835 GGATGGATAGTTGAGATTGGGTTATCT 60.257 40.741 0.00 0.00 37.58 1.98
2206 2358 7.451731 TGGATAGTTGAGATTGGGTTATCTT 57.548 36.000 0.00 0.00 35.06 2.40
2207 2359 7.282585 TGGATAGTTGAGATTGGGTTATCTTG 58.717 38.462 0.00 0.00 35.06 3.02
2208 2360 6.712547 GGATAGTTGAGATTGGGTTATCTTGG 59.287 42.308 0.00 0.00 35.06 3.61
2401 2581 2.866762 GGTTGAAGATTCGATTCCGGAG 59.133 50.000 3.34 0.00 36.24 4.63
2416 2596 0.463833 CGGAGTGGAGTATTTGGGCC 60.464 60.000 0.00 0.00 0.00 5.80
2417 2597 0.623723 GGAGTGGAGTATTTGGGCCA 59.376 55.000 0.00 0.00 0.00 5.36
2488 2669 5.086104 TCCCAGTTATGCTTGTCTAGTTC 57.914 43.478 0.00 0.00 0.00 3.01
2505 2686 9.962783 TGTCTAGTTCTACAACTTCTTTTCTAC 57.037 33.333 0.00 0.00 40.16 2.59
2508 2689 6.531923 AGTTCTACAACTTCTTTTCTACCCC 58.468 40.000 0.00 0.00 40.16 4.95
2510 2691 6.503560 TCTACAACTTCTTTTCTACCCCAA 57.496 37.500 0.00 0.00 0.00 4.12
2511 2692 6.531021 TCTACAACTTCTTTTCTACCCCAAG 58.469 40.000 0.00 0.00 0.00 3.61
2512 2693 5.382664 ACAACTTCTTTTCTACCCCAAGA 57.617 39.130 0.00 0.00 0.00 3.02
2513 2694 5.131067 ACAACTTCTTTTCTACCCCAAGAC 58.869 41.667 0.00 0.00 0.00 3.01
2514 2695 5.130350 CAACTTCTTTTCTACCCCAAGACA 58.870 41.667 0.00 0.00 0.00 3.41
2515 2696 4.715713 ACTTCTTTTCTACCCCAAGACAC 58.284 43.478 0.00 0.00 0.00 3.67
2516 2697 4.165372 ACTTCTTTTCTACCCCAAGACACA 59.835 41.667 0.00 0.00 0.00 3.72
2522 2703 4.216411 TCTACCCCAAGACACATTTAGC 57.784 45.455 0.00 0.00 0.00 3.09
2529 2710 3.108357 GACACATTTAGCCGCCGCC 62.108 63.158 0.00 0.00 34.57 6.13
2550 2731 5.452302 CGCCGTCAATTCAATTCATTTAGAC 59.548 40.000 0.00 0.00 0.00 2.59
2559 2740 4.455533 TCAATTCATTTAGACGCTGCTGTT 59.544 37.500 0.00 0.00 0.00 3.16
2568 2749 0.035317 ACGCTGCTGTTGATTGAGGA 59.965 50.000 0.00 0.00 0.00 3.71
2575 2756 0.322366 TGTTGATTGAGGATGGCGCA 60.322 50.000 10.83 0.00 0.00 6.09
2579 2760 2.221169 TGATTGAGGATGGCGCAATAC 58.779 47.619 10.83 3.43 32.80 1.89
2595 2782 3.722289 GCAATACGGCGTTATAGTTTTGC 59.278 43.478 21.24 17.11 42.23 3.68
2627 2814 7.656707 ATGATGCTTTTTAATGTTTCACACC 57.343 32.000 0.00 0.00 0.00 4.16
2664 2893 3.219281 GAGTAGAGGACTAGAGGGCTTG 58.781 54.545 0.00 0.00 39.06 4.01
2671 2900 5.365314 AGAGGACTAGAGGGCTTGATTTTAG 59.635 44.000 0.00 0.00 0.00 1.85
3105 3762 9.686683 AGGTATAGCTGAAATTTACACATTCTT 57.313 29.630 3.03 0.00 0.00 2.52
3141 3830 2.442878 TCTAATGGTGATGACCCCATGG 59.557 50.000 4.14 4.14 42.34 3.66
3163 3852 7.531857 TGGAAGTTCTATCATCTGACTATCC 57.468 40.000 2.25 0.00 0.00 2.59
3426 4116 2.435805 AGACATGGATATTGCTGTCCGT 59.564 45.455 0.00 0.00 39.00 4.69
3453 4143 7.338710 CACATCTAAAGGGATGGAAGTTTCTA 58.661 38.462 8.91 0.00 45.11 2.10
3482 4180 7.544566 TCTTAACGATGTTGAGGTACTTGAATC 59.455 37.037 0.00 0.00 41.55 2.52
3486 4184 5.503031 CGATGTTGAGGTACTTGAATCATGC 60.503 44.000 0.00 0.00 41.55 4.06
3544 4243 8.567948 TCAAACCTTTACTGATCATTCAAACTC 58.432 33.333 0.00 0.00 0.00 3.01
3715 4675 7.814107 CGTAGGCATATTGGCATATTTTGAAAT 59.186 33.333 3.81 0.00 46.46 2.17
4112 5589 3.068590 CCTCCTCACATTTTGCAAACTGT 59.931 43.478 24.65 24.65 32.82 3.55
4211 5689 4.098501 TCATGTGTGGTTTGTACAAATGCA 59.901 37.500 23.11 17.92 41.45 3.96
4241 5727 6.552859 TCGTTTTGATCAGCATCTTTACAA 57.447 33.333 0.00 0.00 0.00 2.41
4287 5775 8.177119 TCAAATTTTAGCCCCATATACATGTC 57.823 34.615 0.00 0.00 0.00 3.06
4298 5786 5.456619 CCCATATACATGTCCCACTGAATGT 60.457 44.000 0.00 0.00 37.11 2.71
4303 5793 5.178096 ACATGTCCCACTGAATGTCATTA 57.822 39.130 0.00 0.00 0.00 1.90
4304 5794 4.943705 ACATGTCCCACTGAATGTCATTAC 59.056 41.667 0.00 0.00 0.00 1.89
4305 5795 4.908601 TGTCCCACTGAATGTCATTACT 57.091 40.909 0.00 0.00 0.00 2.24
4306 5796 4.832248 TGTCCCACTGAATGTCATTACTC 58.168 43.478 0.00 0.00 0.00 2.59
4307 5797 4.285775 TGTCCCACTGAATGTCATTACTCA 59.714 41.667 0.00 0.00 0.00 3.41
4308 5798 4.631813 GTCCCACTGAATGTCATTACTCAC 59.368 45.833 0.00 0.00 0.00 3.51
4309 5799 3.941483 CCCACTGAATGTCATTACTCACC 59.059 47.826 0.00 0.00 0.00 4.02
4310 5800 4.323792 CCCACTGAATGTCATTACTCACCT 60.324 45.833 0.00 0.00 0.00 4.00
4311 5801 4.633126 CCACTGAATGTCATTACTCACCTG 59.367 45.833 0.00 0.00 0.00 4.00
4312 5802 5.240891 CACTGAATGTCATTACTCACCTGT 58.759 41.667 0.00 0.00 0.00 4.00
4313 5803 5.702670 CACTGAATGTCATTACTCACCTGTT 59.297 40.000 0.00 0.00 0.00 3.16
4336 5826 2.012673 CTACCTCTGTTGCAGATTGGC 58.987 52.381 0.00 0.00 39.92 4.52
4405 5895 4.065321 ACTGATTCTGCCCTTCTATTCG 57.935 45.455 0.00 0.00 0.00 3.34
4546 6036 3.721087 AAGTCCTTCCCATTCATCGTT 57.279 42.857 0.00 0.00 0.00 3.85
4660 6150 1.674322 CACCAAGAAATCGGGCCGT 60.674 57.895 27.32 10.72 0.00 5.68
4750 6240 3.020237 GCCCAACCTCGACTCCCTC 62.020 68.421 0.00 0.00 0.00 4.30
4807 6297 5.045213 ACCCAAACCCAAAAAGAAGAAACAT 60.045 36.000 0.00 0.00 0.00 2.71
5005 6495 4.631813 ACTACAGCAAGCAAGCAGTATAAC 59.368 41.667 6.21 0.00 36.19 1.89
5006 6496 2.416547 ACAGCAAGCAAGCAGTATAACG 59.583 45.455 3.19 0.00 32.12 3.18
5288 6797 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5291 6800 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5292 6801 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5294 6803 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5295 6804 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5297 6806 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5298 6807 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5299 6808 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5302 6811 7.224753 TGTTGTTGTTGTTGTTGTTGTTGTTAT 59.775 29.630 0.00 0.00 0.00 1.89
5303 6812 7.339732 TGTTGTTGTTGTTGTTGTTGTTATC 57.660 32.000 0.00 0.00 0.00 1.75
5304 6813 7.148641 TGTTGTTGTTGTTGTTGTTGTTATCT 58.851 30.769 0.00 0.00 0.00 1.98
5305 6814 7.115520 TGTTGTTGTTGTTGTTGTTGTTATCTG 59.884 33.333 0.00 0.00 0.00 2.90
5306 6815 6.682746 TGTTGTTGTTGTTGTTGTTATCTGT 58.317 32.000 0.00 0.00 0.00 3.41
5310 6819 7.817641 TGTTGTTGTTGTTGTTATCTGTGTAA 58.182 30.769 0.00 0.00 0.00 2.41
5311 6820 8.462811 TGTTGTTGTTGTTGTTATCTGTGTAAT 58.537 29.630 0.00 0.00 0.00 1.89
5312 6821 8.742188 GTTGTTGTTGTTGTTATCTGTGTAATG 58.258 33.333 0.00 0.00 0.00 1.90
5313 6822 7.990917 TGTTGTTGTTGTTATCTGTGTAATGT 58.009 30.769 0.00 0.00 0.00 2.71
5314 6823 9.110502 TGTTGTTGTTGTTATCTGTGTAATGTA 57.889 29.630 0.00 0.00 0.00 2.29
5315 6824 9.377383 GTTGTTGTTGTTATCTGTGTAATGTAC 57.623 33.333 0.00 0.00 0.00 2.90
5316 6825 8.896320 TGTTGTTGTTATCTGTGTAATGTACT 57.104 30.769 0.00 0.00 0.00 2.73
5447 6961 3.492337 TGGTTTGGCTACTACTTTTGGG 58.508 45.455 0.00 0.00 0.00 4.12
5448 6962 2.230508 GGTTTGGCTACTACTTTTGGGC 59.769 50.000 0.00 0.00 0.00 5.36
5449 6963 3.154710 GTTTGGCTACTACTTTTGGGCT 58.845 45.455 0.00 0.00 0.00 5.19
5450 6964 3.518992 TTGGCTACTACTTTTGGGCTT 57.481 42.857 0.00 0.00 0.00 4.35
5451 6965 3.518992 TGGCTACTACTTTTGGGCTTT 57.481 42.857 0.00 0.00 0.00 3.51
5452 6966 3.839778 TGGCTACTACTTTTGGGCTTTT 58.160 40.909 0.00 0.00 0.00 2.27
5453 6967 3.572255 TGGCTACTACTTTTGGGCTTTTG 59.428 43.478 0.00 0.00 0.00 2.44
5454 6968 3.056821 GGCTACTACTTTTGGGCTTTTGG 60.057 47.826 0.00 0.00 0.00 3.28
5466 6980 1.892474 GGCTTTTGGCTTGTGATGGTA 59.108 47.619 0.00 0.00 42.31 3.25
5474 6988 0.806102 CTTGTGATGGTAGCCGACGG 60.806 60.000 10.29 10.29 0.00 4.79
5475 6989 1.537814 TTGTGATGGTAGCCGACGGT 61.538 55.000 16.73 4.97 0.00 4.83
5476 6990 1.518572 GTGATGGTAGCCGACGGTG 60.519 63.158 16.73 0.00 0.00 4.94
5477 6991 2.585247 GATGGTAGCCGACGGTGC 60.585 66.667 16.73 5.92 0.00 5.01
5478 6992 4.157120 ATGGTAGCCGACGGTGCC 62.157 66.667 16.73 14.96 42.14 5.01
5481 6995 4.814294 GTAGCCGACGGTGCCCTG 62.814 72.222 16.73 0.00 0.00 4.45
5485 6999 3.353836 CCGACGGTGCCCTGTTTG 61.354 66.667 5.48 0.00 0.00 2.93
5486 7000 3.353836 CGACGGTGCCCTGTTTGG 61.354 66.667 0.00 0.00 0.00 3.28
5501 7015 2.162608 TGTTTGGTTTTGGTCACTGTCG 59.837 45.455 0.00 0.00 0.00 4.35
5502 7016 2.404923 TTGGTTTTGGTCACTGTCGA 57.595 45.000 0.00 0.00 0.00 4.20
5598 7116 4.624015 AGGAAATTTGCTGTGTGTGATTG 58.376 39.130 11.84 0.00 0.00 2.67
5599 7117 4.099881 AGGAAATTTGCTGTGTGTGATTGT 59.900 37.500 11.84 0.00 0.00 2.71
5600 7118 4.445385 GGAAATTTGCTGTGTGTGATTGTC 59.555 41.667 1.93 0.00 0.00 3.18
5602 7120 2.346766 TTGCTGTGTGTGATTGTCCT 57.653 45.000 0.00 0.00 0.00 3.85
5603 7121 1.882912 TGCTGTGTGTGATTGTCCTC 58.117 50.000 0.00 0.00 0.00 3.71
5604 7122 0.792640 GCTGTGTGTGATTGTCCTCG 59.207 55.000 0.00 0.00 0.00 4.63
5605 7123 1.432514 CTGTGTGTGATTGTCCTCGG 58.567 55.000 0.00 0.00 0.00 4.63
5606 7124 0.602638 TGTGTGTGATTGTCCTCGGC 60.603 55.000 0.00 0.00 0.00 5.54
5660 7179 2.095969 TCGTTCGGCACTTGCATTTTAG 60.096 45.455 3.15 0.00 44.36 1.85
5728 7247 7.218773 GCAACGAGAAATACTATACGTGTACAA 59.781 37.037 0.00 0.00 34.36 2.41
5734 7253 7.701078 AGAAATACTATACGTGTACAACAGCTG 59.299 37.037 13.48 13.48 0.00 4.24
5735 7254 3.508762 ACTATACGTGTACAACAGCTGC 58.491 45.455 15.27 0.00 0.00 5.25
5736 7255 2.743636 ATACGTGTACAACAGCTGCT 57.256 45.000 15.27 0.00 0.00 4.24
5737 7256 2.060326 TACGTGTACAACAGCTGCTC 57.940 50.000 15.27 0.40 0.00 4.26
5804 7323 0.878523 GCACGCCAATCGCCTATACA 60.879 55.000 0.00 0.00 43.23 2.29
5838 7357 0.808125 CAGTCTGTCTGTCTCCTCGG 59.192 60.000 0.00 0.00 39.17 4.63
5839 7358 0.963355 AGTCTGTCTGTCTCCTCGGC 60.963 60.000 0.00 0.00 0.00 5.54
5840 7359 0.963355 GTCTGTCTGTCTCCTCGGCT 60.963 60.000 0.00 0.00 0.00 5.52
5841 7360 0.618981 TCTGTCTGTCTCCTCGGCTA 59.381 55.000 0.00 0.00 0.00 3.93
5842 7361 1.213182 TCTGTCTGTCTCCTCGGCTAT 59.787 52.381 0.00 0.00 0.00 2.97
5843 7362 1.606668 CTGTCTGTCTCCTCGGCTATC 59.393 57.143 0.00 0.00 0.00 2.08
5844 7363 1.213182 TGTCTGTCTCCTCGGCTATCT 59.787 52.381 0.00 0.00 0.00 1.98
5845 7364 2.438392 TGTCTGTCTCCTCGGCTATCTA 59.562 50.000 0.00 0.00 0.00 1.98
5846 7365 3.073209 TGTCTGTCTCCTCGGCTATCTAT 59.927 47.826 0.00 0.00 0.00 1.98
5849 7368 4.778427 TCTGTCTCCTCGGCTATCTATCTA 59.222 45.833 0.00 0.00 0.00 1.98
5852 7371 5.720520 TGTCTCCTCGGCTATCTATCTACTA 59.279 44.000 0.00 0.00 0.00 1.82
5861 7380 6.072728 CGGCTATCTATCTACTATGCCTGATC 60.073 46.154 0.00 0.00 37.22 2.92
5865 7384 9.276590 CTATCTATCTACTATGCCTGATCTCTG 57.723 40.741 0.00 0.00 0.00 3.35
5870 7389 2.629137 ACTATGCCTGATCTCTGCTCTG 59.371 50.000 0.00 0.00 0.00 3.35
5887 7406 1.412710 TCTGTTCCACGGCTATCCATC 59.587 52.381 0.00 0.00 0.00 3.51
5888 7407 1.138859 CTGTTCCACGGCTATCCATCA 59.861 52.381 0.00 0.00 0.00 3.07
5890 7409 2.224281 TGTTCCACGGCTATCCATCATC 60.224 50.000 0.00 0.00 0.00 2.92
5892 7411 0.318441 CCACGGCTATCCATCATCGT 59.682 55.000 0.00 0.00 0.00 3.73
5893 7412 1.422388 CACGGCTATCCATCATCGTG 58.578 55.000 0.00 0.00 41.09 4.35
5894 7413 0.318441 ACGGCTATCCATCATCGTGG 59.682 55.000 0.00 0.00 40.76 4.94
5910 7429 6.057533 TCATCGTGGATGCAGATAATTTTCT 58.942 36.000 0.00 0.00 39.63 2.52
5920 7439 6.863275 TGCAGATAATTTTCTCTACACTCGA 58.137 36.000 0.00 0.00 0.00 4.04
5939 7458 9.581099 ACACTCGATCAAAATTTGTAAAAACTT 57.419 25.926 5.56 0.00 0.00 2.66
5944 7463 9.772282 CGATCAAAATTTGTAAAAACTTTACGG 57.228 29.630 5.56 0.00 0.00 4.02
5961 7480 9.645059 AACTTTACGGATTTTAACTACTACCTC 57.355 33.333 0.00 0.00 0.00 3.85
5962 7481 8.253810 ACTTTACGGATTTTAACTACTACCTCC 58.746 37.037 0.00 0.00 0.00 4.30
5964 7483 5.254339 CGGATTTTAACTACTACCTCCGT 57.746 43.478 0.00 0.00 39.53 4.69
5965 7484 5.654497 CGGATTTTAACTACTACCTCCGTT 58.346 41.667 0.00 0.00 39.53 4.44
5966 7485 5.745769 CGGATTTTAACTACTACCTCCGTTC 59.254 44.000 0.00 0.00 39.53 3.95
5967 7486 6.045318 GGATTTTAACTACTACCTCCGTTCC 58.955 44.000 0.00 0.00 0.00 3.62
5968 7487 6.127225 GGATTTTAACTACTACCTCCGTTCCT 60.127 42.308 0.00 0.00 0.00 3.36
5969 7488 7.068716 GGATTTTAACTACTACCTCCGTTCCTA 59.931 40.741 0.00 0.00 0.00 2.94
5970 7489 7.775053 TTTTAACTACTACCTCCGTTCCTAA 57.225 36.000 0.00 0.00 0.00 2.69
5971 7490 7.775053 TTTAACTACTACCTCCGTTCCTAAA 57.225 36.000 0.00 0.00 0.00 1.85
5974 7493 9.646522 TTAACTACTACCTCCGTTCCTAAATAT 57.353 33.333 0.00 0.00 0.00 1.28
5978 7497 9.294614 CTACTACCTCCGTTCCTAAATATAAGT 57.705 37.037 0.00 0.00 0.00 2.24
6044 7599 6.885922 ACTTATATTTAGAAACGCAGGGAGT 58.114 36.000 0.00 0.00 0.00 3.85
6046 7601 8.142551 ACTTATATTTAGAAACGCAGGGAGTAG 58.857 37.037 0.00 0.00 0.00 2.57
6048 7603 4.612264 TTTAGAAACGCAGGGAGTAGTT 57.388 40.909 0.00 0.00 0.00 2.24
6049 7604 4.612264 TTAGAAACGCAGGGAGTAGTTT 57.388 40.909 0.00 0.00 39.21 2.66
6058 7613 7.778185 ACGCAGGGAGTAGTTTCTATATATT 57.222 36.000 0.00 0.00 0.00 1.28
6059 7614 7.828712 ACGCAGGGAGTAGTTTCTATATATTC 58.171 38.462 0.00 0.00 0.00 1.75
6060 7615 7.450634 ACGCAGGGAGTAGTTTCTATATATTCA 59.549 37.037 0.00 0.00 0.00 2.57
6061 7616 8.304596 CGCAGGGAGTAGTTTCTATATATTCAA 58.695 37.037 0.00 0.00 0.00 2.69
6142 7713 0.108329 GCTAGCTAGTTTCCACGGCA 60.108 55.000 21.62 0.00 0.00 5.69
6159 7730 0.539051 GCATGCCCGGATCTAGCTAT 59.461 55.000 6.36 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.347729 AGTTTTACAACCAAATCGAAATTGTC 57.652 30.769 11.83 0.00 35.26 3.18
1 2 9.974980 ATAGTTTTACAACCAAATCGAAATTGT 57.025 25.926 11.83 9.75 37.30 2.71
28 29 9.238368 ACCCAATCGAAATTGTCTCTAATAAAA 57.762 29.630 0.00 0.00 40.63 1.52
29 30 8.801882 ACCCAATCGAAATTGTCTCTAATAAA 57.198 30.769 0.00 0.00 40.63 1.40
30 31 8.673711 CAACCCAATCGAAATTGTCTCTAATAA 58.326 33.333 0.00 0.00 40.63 1.40
31 32 7.827236 ACAACCCAATCGAAATTGTCTCTAATA 59.173 33.333 0.00 0.00 40.63 0.98
32 33 6.659242 ACAACCCAATCGAAATTGTCTCTAAT 59.341 34.615 0.00 0.00 40.63 1.73
33 34 6.001460 ACAACCCAATCGAAATTGTCTCTAA 58.999 36.000 0.00 0.00 40.63 2.10
34 35 5.556915 ACAACCCAATCGAAATTGTCTCTA 58.443 37.500 0.00 0.00 40.63 2.43
35 36 4.398319 ACAACCCAATCGAAATTGTCTCT 58.602 39.130 0.00 0.00 40.63 3.10
36 37 4.766404 ACAACCCAATCGAAATTGTCTC 57.234 40.909 0.00 0.00 40.63 3.36
37 38 6.642707 TTTACAACCCAATCGAAATTGTCT 57.357 33.333 0.00 0.00 40.63 3.41
38 39 6.921307 AGTTTTACAACCCAATCGAAATTGTC 59.079 34.615 0.00 0.00 40.63 3.18
39 40 6.811954 AGTTTTACAACCCAATCGAAATTGT 58.188 32.000 0.00 0.00 40.63 2.71
40 41 8.980143 ATAGTTTTACAACCCAATCGAAATTG 57.020 30.769 0.00 0.00 41.69 2.32
41 42 9.990360 AAATAGTTTTACAACCCAATCGAAATT 57.010 25.926 0.00 0.00 32.70 1.82
42 43 9.990360 AAAATAGTTTTACAACCCAATCGAAAT 57.010 25.926 0.00 0.00 32.70 2.17
77 78 9.723601 AGTTTGCACATCCAAATATTAATTGTT 57.276 25.926 0.00 0.00 37.09 2.83
78 79 9.723601 AAGTTTGCACATCCAAATATTAATTGT 57.276 25.926 0.00 0.00 37.09 2.71
79 80 9.976255 CAAGTTTGCACATCCAAATATTAATTG 57.024 29.630 0.00 0.00 37.09 2.32
80 81 9.723601 ACAAGTTTGCACATCCAAATATTAATT 57.276 25.926 0.00 0.00 37.09 1.40
81 82 9.723601 AACAAGTTTGCACATCCAAATATTAAT 57.276 25.926 0.00 0.00 37.09 1.40
82 83 9.553064 AAACAAGTTTGCACATCCAAATATTAA 57.447 25.926 0.00 0.00 37.09 1.40
83 84 9.553064 AAAACAAGTTTGCACATCCAAATATTA 57.447 25.926 0.00 0.00 37.09 0.98
84 85 8.449251 AAAACAAGTTTGCACATCCAAATATT 57.551 26.923 0.00 0.00 37.09 1.28
85 86 7.714377 TGAAAACAAGTTTGCACATCCAAATAT 59.286 29.630 2.23 0.00 37.09 1.28
86 87 7.044181 TGAAAACAAGTTTGCACATCCAAATA 58.956 30.769 2.23 0.00 37.09 1.40
87 88 5.879223 TGAAAACAAGTTTGCACATCCAAAT 59.121 32.000 2.23 0.00 37.09 2.32
88 89 5.240891 TGAAAACAAGTTTGCACATCCAAA 58.759 33.333 2.23 0.00 33.38 3.28
89 90 4.825422 TGAAAACAAGTTTGCACATCCAA 58.175 34.783 2.23 0.00 33.38 3.53
90 91 4.462508 TGAAAACAAGTTTGCACATCCA 57.537 36.364 2.23 0.00 33.38 3.41
91 92 6.867816 TCATATGAAAACAAGTTTGCACATCC 59.132 34.615 8.45 0.00 40.62 3.51
92 93 7.872163 TCATATGAAAACAAGTTTGCACATC 57.128 32.000 8.45 0.00 40.62 3.06
93 94 8.659925 TTTCATATGAAAACAAGTTTGCACAT 57.340 26.923 25.11 11.58 40.62 3.21
94 95 8.484641 TTTTCATATGAAAACAAGTTTGCACA 57.515 26.923 30.75 11.55 45.76 4.57
109 110 8.313292 GCCTAAAATGCCCATATTTTCATATGA 58.687 33.333 0.00 0.00 43.68 2.15
110 111 7.550196 GGCCTAAAATGCCCATATTTTCATATG 59.450 37.037 0.00 0.00 43.33 1.78
111 112 7.623630 GGCCTAAAATGCCCATATTTTCATAT 58.376 34.615 0.00 0.00 43.33 1.78
112 113 7.003402 GGCCTAAAATGCCCATATTTTCATA 57.997 36.000 0.00 0.00 43.33 2.15
113 114 5.868454 GGCCTAAAATGCCCATATTTTCAT 58.132 37.500 0.00 0.00 43.33 2.57
114 115 5.289083 GGCCTAAAATGCCCATATTTTCA 57.711 39.130 0.00 0.00 43.33 2.69
125 126 2.785425 CCGCCAGGGCCTAAAATGC 61.785 63.158 5.28 3.29 37.98 3.56
126 127 1.077068 TCCGCCAGGGCCTAAAATG 60.077 57.895 5.28 0.00 38.33 2.32
127 128 1.076995 GTCCGCCAGGGCCTAAAAT 60.077 57.895 5.28 0.00 35.69 1.82
128 129 2.353573 GTCCGCCAGGGCCTAAAA 59.646 61.111 5.28 0.00 35.69 1.52
129 130 4.090588 CGTCCGCCAGGGCCTAAA 62.091 66.667 5.28 0.00 39.51 1.85
141 142 4.418328 TTTGCCCCATCCCGTCCG 62.418 66.667 0.00 0.00 0.00 4.79
142 143 2.754254 GTTTGCCCCATCCCGTCC 60.754 66.667 0.00 0.00 0.00 4.79
143 144 3.131478 CGTTTGCCCCATCCCGTC 61.131 66.667 0.00 0.00 0.00 4.79
144 145 4.733542 CCGTTTGCCCCATCCCGT 62.734 66.667 0.00 0.00 0.00 5.28
145 146 3.714487 ATCCGTTTGCCCCATCCCG 62.714 63.158 0.00 0.00 0.00 5.14
146 147 2.127232 CATCCGTTTGCCCCATCCC 61.127 63.158 0.00 0.00 0.00 3.85
147 148 2.785425 GCATCCGTTTGCCCCATCC 61.785 63.158 0.00 0.00 36.60 3.51
148 149 2.807622 GCATCCGTTTGCCCCATC 59.192 61.111 0.00 0.00 36.60 3.51
149 150 3.140141 CGCATCCGTTTGCCCCAT 61.140 61.111 1.70 0.00 39.52 4.00
182 183 4.386951 TGGGATGCGGTGGTCGTG 62.387 66.667 0.00 0.00 41.72 4.35
183 184 4.082523 CTGGGATGCGGTGGTCGT 62.083 66.667 0.00 0.00 41.72 4.34
184 185 4.838152 CCTGGGATGCGGTGGTCG 62.838 72.222 0.00 0.00 42.76 4.79
185 186 3.399181 TCCTGGGATGCGGTGGTC 61.399 66.667 0.00 0.00 0.00 4.02
186 187 3.717294 GTCCTGGGATGCGGTGGT 61.717 66.667 0.00 0.00 0.00 4.16
187 188 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
188 189 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
189 190 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
190 191 4.864334 GCCTGTCCTGGGATGCGG 62.864 72.222 0.00 0.00 0.00 5.69
191 192 4.864334 GGCCTGTCCTGGGATGCG 62.864 72.222 0.00 0.00 0.00 4.73
192 193 4.512914 GGGCCTGTCCTGGGATGC 62.513 72.222 0.84 0.00 34.39 3.91
193 194 4.181010 CGGGCCTGTCCTGGGATG 62.181 72.222 2.29 0.00 37.58 3.51
198 199 4.394712 GTGTCCGGGCCTGTCCTG 62.395 72.222 11.58 0.00 41.11 3.86
201 202 4.736896 GTCGTGTCCGGGCCTGTC 62.737 72.222 11.58 3.86 33.95 3.51
207 208 4.157120 GATGGGGTCGTGTCCGGG 62.157 72.222 0.00 0.00 33.95 5.73
208 209 4.508128 CGATGGGGTCGTGTCCGG 62.508 72.222 0.00 0.00 45.19 5.14
216 217 3.557290 GGGTAGGGCGATGGGGTC 61.557 72.222 0.00 0.00 0.00 4.46
217 218 3.954740 TTGGGTAGGGCGATGGGGT 62.955 63.158 0.00 0.00 0.00 4.95
218 219 2.624674 CTTTGGGTAGGGCGATGGGG 62.625 65.000 0.00 0.00 0.00 4.96
219 220 1.152963 CTTTGGGTAGGGCGATGGG 60.153 63.158 0.00 0.00 0.00 4.00
220 221 1.152963 CCTTTGGGTAGGGCGATGG 60.153 63.158 0.00 0.00 0.00 3.51
221 222 4.559502 CCTTTGGGTAGGGCGATG 57.440 61.111 0.00 0.00 0.00 3.84
227 228 2.846827 AGATTCTGTCCCTTTGGGTAGG 59.153 50.000 2.25 0.00 44.74 3.18
228 229 3.370953 CCAGATTCTGTCCCTTTGGGTAG 60.371 52.174 12.54 3.43 44.74 3.18
229 230 2.576191 CCAGATTCTGTCCCTTTGGGTA 59.424 50.000 12.54 0.00 44.74 3.69
230 231 1.355720 CCAGATTCTGTCCCTTTGGGT 59.644 52.381 12.54 0.00 44.74 4.51
231 232 1.957113 GCCAGATTCTGTCCCTTTGGG 60.957 57.143 12.54 0.00 46.11 4.12
232 233 1.467920 GCCAGATTCTGTCCCTTTGG 58.532 55.000 12.54 0.00 0.00 3.28
233 234 1.272092 TGGCCAGATTCTGTCCCTTTG 60.272 52.381 11.08 0.00 26.96 2.77
234 235 1.075601 TGGCCAGATTCTGTCCCTTT 58.924 50.000 11.08 0.00 26.96 3.11
235 236 1.075601 TTGGCCAGATTCTGTCCCTT 58.924 50.000 11.08 0.00 26.96 3.95
236 237 1.005215 CTTTGGCCAGATTCTGTCCCT 59.995 52.381 11.08 0.00 26.96 4.20
237 238 1.467920 CTTTGGCCAGATTCTGTCCC 58.532 55.000 11.08 11.41 26.96 4.46
238 239 0.813821 GCTTTGGCCAGATTCTGTCC 59.186 55.000 5.11 9.78 29.18 4.02
239 240 0.449388 CGCTTTGGCCAGATTCTGTC 59.551 55.000 5.11 0.00 34.44 3.51
240 241 0.962356 CCGCTTTGGCCAGATTCTGT 60.962 55.000 5.11 0.00 34.44 3.41
241 242 0.677731 TCCGCTTTGGCCAGATTCTG 60.678 55.000 5.11 6.70 37.80 3.02
242 243 0.678048 GTCCGCTTTGGCCAGATTCT 60.678 55.000 5.11 0.00 37.80 2.40
243 244 1.803289 GTCCGCTTTGGCCAGATTC 59.197 57.895 5.11 0.00 37.80 2.52
244 245 2.040544 CGTCCGCTTTGGCCAGATT 61.041 57.895 5.11 0.00 37.80 2.40
245 246 2.436646 CGTCCGCTTTGGCCAGAT 60.437 61.111 5.11 0.00 37.80 2.90
246 247 3.876589 GACGTCCGCTTTGGCCAGA 62.877 63.158 5.11 0.00 37.80 3.86
247 248 3.423154 GACGTCCGCTTTGGCCAG 61.423 66.667 5.11 0.00 37.80 4.85
258 259 2.357881 GACCCCAAACGGACGTCC 60.358 66.667 25.28 25.28 0.00 4.79
259 260 2.735857 CGACCCCAAACGGACGTC 60.736 66.667 7.13 7.13 0.00 4.34
260 261 3.539791 ACGACCCCAAACGGACGT 61.540 61.111 0.00 0.00 38.78 4.34
261 262 3.039588 CACGACCCCAAACGGACG 61.040 66.667 0.00 0.00 37.29 4.79
262 263 3.351416 GCACGACCCCAAACGGAC 61.351 66.667 0.00 0.00 0.00 4.79
263 264 4.973055 CGCACGACCCCAAACGGA 62.973 66.667 0.00 0.00 0.00 4.69
266 267 3.656045 CACCGCACGACCCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
267 268 4.939368 CCACCGCACGACCCCAAA 62.939 66.667 0.00 0.00 0.00 3.28
271 272 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
272 273 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
273 274 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
274 275 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
276 277 2.741486 TTAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
277 278 1.847798 ATTAGGCCAACTCCACCGCA 61.848 55.000 5.01 0.00 0.00 5.69
278 279 1.077716 ATTAGGCCAACTCCACCGC 60.078 57.895 5.01 0.00 0.00 5.68
279 280 0.251916 TGATTAGGCCAACTCCACCG 59.748 55.000 5.01 0.00 0.00 4.94
280 281 2.507407 TTGATTAGGCCAACTCCACC 57.493 50.000 5.01 0.00 0.00 4.61
281 282 3.879892 GAGATTGATTAGGCCAACTCCAC 59.120 47.826 5.01 0.00 0.00 4.02
282 283 3.432186 CGAGATTGATTAGGCCAACTCCA 60.432 47.826 5.01 0.00 0.00 3.86
283 284 3.134458 CGAGATTGATTAGGCCAACTCC 58.866 50.000 5.01 0.00 0.00 3.85
284 285 2.545946 GCGAGATTGATTAGGCCAACTC 59.454 50.000 5.01 0.00 0.00 3.01
285 286 2.565841 GCGAGATTGATTAGGCCAACT 58.434 47.619 5.01 0.00 0.00 3.16
286 287 1.604278 GGCGAGATTGATTAGGCCAAC 59.396 52.381 5.01 0.00 40.24 3.77
287 288 1.810031 CGGCGAGATTGATTAGGCCAA 60.810 52.381 5.01 0.00 40.52 4.52
288 289 0.249868 CGGCGAGATTGATTAGGCCA 60.250 55.000 5.01 0.00 40.52 5.36
289 290 1.569479 GCGGCGAGATTGATTAGGCC 61.569 60.000 12.98 0.00 37.21 5.19
290 291 0.601311 AGCGGCGAGATTGATTAGGC 60.601 55.000 12.98 0.00 0.00 3.93
291 292 1.143305 CAGCGGCGAGATTGATTAGG 58.857 55.000 12.98 0.00 0.00 2.69
315 316 2.052782 ATAATCCCCACTTCGGTTGC 57.947 50.000 0.00 0.00 0.00 4.17
413 418 7.118680 AAATGTACATTTATTCACGGACGAAGT 59.881 33.333 28.20 2.24 41.05 3.01
416 421 6.971527 AAATGTACATTTATTCACGGACGA 57.028 33.333 28.20 0.00 39.08 4.20
496 508 9.019656 TGTTACTAATTCAGTGCCATAAATGTT 57.980 29.630 0.00 0.00 38.24 2.71
520 532 8.268850 AGTACATTTCAAAGCGAATCTAATGT 57.731 30.769 0.00 0.00 35.54 2.71
639 651 6.143206 TCTCACTCCCTCCATGAATAATGTA 58.857 40.000 0.00 0.00 34.11 2.29
640 652 4.971282 TCTCACTCCCTCCATGAATAATGT 59.029 41.667 0.00 0.00 34.11 2.71
641 653 5.549347 CTCTCACTCCCTCCATGAATAATG 58.451 45.833 0.00 0.00 35.89 1.90
642 654 4.041444 GCTCTCACTCCCTCCATGAATAAT 59.959 45.833 0.00 0.00 0.00 1.28
709 729 1.194781 GGTTCCAGCTGGAGACCTCA 61.195 60.000 35.66 22.77 46.36 3.86
710 730 1.194781 TGGTTCCAGCTGGAGACCTC 61.195 60.000 38.44 27.21 46.36 3.85
711 731 1.152030 TGGTTCCAGCTGGAGACCT 60.152 57.895 38.44 0.98 46.36 3.85
740 760 6.816134 AAAGAGAAGAAAATTCAGAGCTCC 57.184 37.500 10.93 0.00 0.00 4.70
920 960 0.321475 AGGAAACAGCTCAGCTCAGC 60.321 55.000 0.00 0.00 36.40 4.26
959 1001 3.086600 CAGGGAGAGGACTGGGGC 61.087 72.222 0.00 0.00 0.00 5.80
961 1003 2.040278 AGCAGGGAGAGGACTGGG 59.960 66.667 0.00 0.00 35.30 4.45
1045 1096 1.383248 CAGGAGGAAGGACGGGGAT 60.383 63.158 0.00 0.00 0.00 3.85
1112 1167 2.030490 CTGAGGCTAGGCTGGAGCTG 62.030 65.000 25.50 9.23 39.98 4.24
1163 1226 0.321034 CTTGCTGGCTGTAGCTGTGA 60.321 55.000 0.00 0.00 44.01 3.58
1165 1228 1.002868 CCTTGCTGGCTGTAGCTGT 60.003 57.895 0.00 0.00 44.01 4.40
1166 1229 1.748122 CCCTTGCTGGCTGTAGCTG 60.748 63.158 0.00 0.00 44.01 4.24
1170 1233 4.047125 GCCCCCTTGCTGGCTGTA 62.047 66.667 0.00 0.00 44.46 2.74
1496 1583 2.981909 TTGTCGGCGTCGGAGTCT 60.982 61.111 10.62 0.00 36.95 3.24
1869 2007 4.999939 CTTGCCGTTGCCGTTGCC 63.000 66.667 0.00 0.00 36.33 4.52
1870 2008 4.999939 CCTTGCCGTTGCCGTTGC 63.000 66.667 0.00 0.00 36.33 4.17
1871 2009 4.341502 CCCTTGCCGTTGCCGTTG 62.342 66.667 0.00 0.00 36.33 4.10
2047 2193 4.853142 ATCCCAGGCCGCGACCTA 62.853 66.667 15.56 0.00 38.26 3.08
2167 2313 5.544441 ACTATCCATCCTACTATGGCTCT 57.456 43.478 0.00 0.00 45.21 4.09
2168 2314 5.717178 TCAACTATCCATCCTACTATGGCTC 59.283 44.000 0.00 0.00 45.21 4.70
2169 2315 5.655394 TCAACTATCCATCCTACTATGGCT 58.345 41.667 0.00 0.00 45.21 4.75
2170 2316 5.717178 TCTCAACTATCCATCCTACTATGGC 59.283 44.000 0.00 0.00 45.21 4.40
2171 2317 7.969690 ATCTCAACTATCCATCCTACTATGG 57.030 40.000 0.00 0.00 46.69 2.74
2172 2318 8.256605 CCAATCTCAACTATCCATCCTACTATG 58.743 40.741 0.00 0.00 0.00 2.23
2174 2320 6.726299 CCCAATCTCAACTATCCATCCTACTA 59.274 42.308 0.00 0.00 0.00 1.82
2175 2321 5.545723 CCCAATCTCAACTATCCATCCTACT 59.454 44.000 0.00 0.00 0.00 2.57
2176 2322 5.308237 ACCCAATCTCAACTATCCATCCTAC 59.692 44.000 0.00 0.00 0.00 3.18
2177 2323 5.476983 ACCCAATCTCAACTATCCATCCTA 58.523 41.667 0.00 0.00 0.00 2.94
2178 2324 4.310740 ACCCAATCTCAACTATCCATCCT 58.689 43.478 0.00 0.00 0.00 3.24
2179 2325 4.713792 ACCCAATCTCAACTATCCATCC 57.286 45.455 0.00 0.00 0.00 3.51
2181 2327 7.639062 AGATAACCCAATCTCAACTATCCAT 57.361 36.000 0.00 0.00 30.09 3.41
2205 2357 1.028905 GTTACTGGCACTGCAACCAA 58.971 50.000 2.82 0.00 34.96 3.67
2206 2358 1.163420 CGTTACTGGCACTGCAACCA 61.163 55.000 2.82 3.03 31.10 3.67
2207 2359 1.574428 CGTTACTGGCACTGCAACC 59.426 57.895 2.82 0.00 31.10 3.77
2208 2360 1.082104 GCGTTACTGGCACTGCAAC 60.082 57.895 2.82 0.00 31.45 4.17
2401 2581 2.755103 CTCTTTGGCCCAAATACTCCAC 59.245 50.000 9.81 0.00 32.70 4.02
2416 2596 4.953940 TCCCCAAAAATGGAACTCTTTG 57.046 40.909 0.00 0.00 0.00 2.77
2417 2597 4.286808 CCATCCCCAAAAATGGAACTCTTT 59.713 41.667 0.00 0.00 44.37 2.52
2488 2669 6.427242 GTCTTGGGGTAGAAAAGAAGTTGTAG 59.573 42.308 0.00 0.00 32.03 2.74
2505 2686 1.094785 CGGCTAAATGTGTCTTGGGG 58.905 55.000 0.00 0.00 0.00 4.96
2508 2689 0.096976 CGGCGGCTAAATGTGTCTTG 59.903 55.000 7.61 0.00 0.00 3.02
2510 2691 2.106683 GCGGCGGCTAAATGTGTCT 61.107 57.895 9.78 0.00 35.83 3.41
2511 2692 2.403586 GCGGCGGCTAAATGTGTC 59.596 61.111 9.78 0.00 35.83 3.67
2512 2693 3.131478 GGCGGCGGCTAAATGTGT 61.131 61.111 27.22 0.00 39.81 3.72
2513 2694 4.236416 CGGCGGCGGCTAAATGTG 62.236 66.667 30.65 9.91 39.81 3.21
2514 2695 4.770874 ACGGCGGCGGCTAAATGT 62.771 61.111 35.05 17.89 39.81 2.71
2515 2696 3.937062 GACGGCGGCGGCTAAATG 61.937 66.667 35.05 17.20 39.81 2.32
2516 2697 3.961838 TTGACGGCGGCGGCTAAAT 62.962 57.895 37.66 14.87 39.81 1.40
2522 2703 2.265073 AATTGAATTGACGGCGGCGG 62.265 55.000 35.05 17.25 0.00 6.13
2529 2710 6.193410 CAGCGTCTAAATGAATTGAATTGACG 59.807 38.462 16.75 16.75 44.73 4.35
2550 2731 1.063616 CATCCTCAATCAACAGCAGCG 59.936 52.381 0.00 0.00 0.00 5.18
2559 2740 2.221169 GTATTGCGCCATCCTCAATCA 58.779 47.619 4.18 0.00 33.13 2.57
2575 2756 5.122711 ACAAGCAAAACTATAACGCCGTATT 59.877 36.000 0.00 0.00 0.00 1.89
2579 2760 3.465122 ACAAGCAAAACTATAACGCCG 57.535 42.857 0.00 0.00 0.00 6.46
2580 2761 7.539366 TCATTAAACAAGCAAAACTATAACGCC 59.461 33.333 0.00 0.00 0.00 5.68
2627 2814 7.652507 GTCCTCTACTCGAACAATAATTTAGGG 59.347 40.741 0.00 0.00 0.00 3.53
3105 3762 3.814842 CCATTAGATAAGAATGCACCGCA 59.185 43.478 0.00 0.00 44.86 5.69
3141 3830 6.090129 GCGGATAGTCAGATGATAGAACTTC 58.910 44.000 0.00 0.00 0.00 3.01
3426 4116 3.266772 ACTTCCATCCCTTTAGATGTGCA 59.733 43.478 1.26 0.00 41.79 4.57
3453 4143 8.692710 TCAAGTACCTCAACATCGTTAAGATAT 58.307 33.333 0.00 0.00 37.52 1.63
3482 4180 6.949352 AAGTCATAAACCATAAGAGGCATG 57.051 37.500 0.00 0.00 0.00 4.06
3486 4184 8.567285 ACAGAAAAGTCATAAACCATAAGAGG 57.433 34.615 0.00 0.00 0.00 3.69
3544 4243 5.049405 ACTGAAAGGAAAATTCGTGTAGCAG 60.049 40.000 0.00 0.00 39.30 4.24
3715 4675 6.466885 TTTCCCCGAAAAACAAAACTCATA 57.533 33.333 0.00 0.00 0.00 2.15
3725 4924 4.754372 ACTCGTATTTTCCCCGAAAAAC 57.246 40.909 3.85 3.87 43.32 2.43
3731 4930 4.436451 GCAGTTAAACTCGTATTTTCCCCG 60.436 45.833 0.00 0.00 0.00 5.73
3864 5107 9.953825 CTTGTCGTACTAATCAAATTGTACTTC 57.046 33.333 0.00 0.00 34.75 3.01
3915 5158 5.187772 GCTTCCTGGGAAATAATCAACCTTT 59.812 40.000 3.55 0.00 33.34 3.11
4282 5768 5.188434 AGTAATGACATTCAGTGGGACATG 58.812 41.667 3.36 0.00 44.52 3.21
4287 5775 3.941483 GGTGAGTAATGACATTCAGTGGG 59.059 47.826 3.36 0.00 0.00 4.61
4298 5786 5.586877 AGGTAGGTAACAGGTGAGTAATGA 58.413 41.667 0.00 0.00 41.41 2.57
4303 5793 3.181420 ACAGAGGTAGGTAACAGGTGAGT 60.181 47.826 0.00 0.00 41.41 3.41
4304 5794 3.432378 ACAGAGGTAGGTAACAGGTGAG 58.568 50.000 0.00 0.00 41.41 3.51
4305 5795 3.537795 ACAGAGGTAGGTAACAGGTGA 57.462 47.619 0.00 0.00 41.41 4.02
4306 5796 3.864921 GCAACAGAGGTAGGTAACAGGTG 60.865 52.174 0.00 0.00 41.41 4.00
4307 5797 2.302157 GCAACAGAGGTAGGTAACAGGT 59.698 50.000 0.00 0.00 41.41 4.00
4308 5798 2.301870 TGCAACAGAGGTAGGTAACAGG 59.698 50.000 0.00 0.00 41.41 4.00
4309 5799 3.258372 TCTGCAACAGAGGTAGGTAACAG 59.742 47.826 0.00 0.00 35.39 3.16
4310 5800 3.236047 TCTGCAACAGAGGTAGGTAACA 58.764 45.455 0.00 0.00 35.39 2.41
4311 5801 3.955650 TCTGCAACAGAGGTAGGTAAC 57.044 47.619 0.00 0.00 35.39 2.50
4312 5802 4.323485 CCAATCTGCAACAGAGGTAGGTAA 60.323 45.833 3.42 0.00 44.08 2.85
4313 5803 3.197766 CCAATCTGCAACAGAGGTAGGTA 59.802 47.826 3.42 0.00 44.08 3.08
4336 5826 6.830873 ATCAGGTTGAATTTCTTCCAGAAG 57.169 37.500 0.73 0.73 35.37 2.85
4405 5895 2.423926 TGACGCAGAAGAGAGTGAAC 57.576 50.000 0.00 0.00 0.00 3.18
4468 5958 1.546773 GGAATGTAGCACACCACCCAA 60.547 52.381 0.00 0.00 0.00 4.12
4546 6036 2.904434 GTTCTCAAACAGGAGGTAGGGA 59.096 50.000 0.00 0.00 35.58 4.20
4630 6120 0.757561 TCTTGGTGACGACCCACTCA 60.758 55.000 0.00 0.00 42.34 3.41
4750 6240 0.883833 ACAATTCCTCCTTTGCTGCG 59.116 50.000 0.00 0.00 0.00 5.18
4807 6297 8.804204 GCTAGCTCTTTCCTGTATAACCTATTA 58.196 37.037 7.70 0.00 0.00 0.98
4871 6361 1.841302 ATGCCCTGAACCGAGAGCAA 61.841 55.000 0.00 0.00 33.35 3.91
5024 6514 0.447406 CCACGCGCTTCATCAAATGA 59.553 50.000 5.73 0.00 37.55 2.57
5288 6797 7.990917 ACATTACACAGATAACAACAACAACA 58.009 30.769 0.00 0.00 0.00 3.33
5291 6800 8.896320 AGTACATTACACAGATAACAACAACA 57.104 30.769 0.00 0.00 0.00 3.33
5295 6804 9.607285 CCAAAAGTACATTACACAGATAACAAC 57.393 33.333 0.00 0.00 0.00 3.32
5297 6806 9.562408 TTCCAAAAGTACATTACACAGATAACA 57.438 29.630 0.00 0.00 0.00 2.41
5302 6811 6.488344 TGCATTCCAAAAGTACATTACACAGA 59.512 34.615 0.00 0.00 0.00 3.41
5303 6812 6.676950 TGCATTCCAAAAGTACATTACACAG 58.323 36.000 0.00 0.00 0.00 3.66
5304 6813 6.641169 TGCATTCCAAAAGTACATTACACA 57.359 33.333 0.00 0.00 0.00 3.72
5305 6814 8.458843 ACTATGCATTCCAAAAGTACATTACAC 58.541 33.333 3.54 0.00 0.00 2.90
5306 6815 8.458052 CACTATGCATTCCAAAAGTACATTACA 58.542 33.333 3.54 0.00 0.00 2.41
5310 6819 6.886459 ACTCACTATGCATTCCAAAAGTACAT 59.114 34.615 3.54 0.00 0.00 2.29
5311 6820 6.149308 CACTCACTATGCATTCCAAAAGTACA 59.851 38.462 3.54 0.00 0.00 2.90
5312 6821 6.371548 TCACTCACTATGCATTCCAAAAGTAC 59.628 38.462 3.54 0.00 0.00 2.73
5313 6822 6.472016 TCACTCACTATGCATTCCAAAAGTA 58.528 36.000 3.54 0.00 0.00 2.24
5314 6823 5.316167 TCACTCACTATGCATTCCAAAAGT 58.684 37.500 3.54 0.00 0.00 2.66
5315 6824 5.885230 TCACTCACTATGCATTCCAAAAG 57.115 39.130 3.54 0.00 0.00 2.27
5316 6825 7.112122 AGTATCACTCACTATGCATTCCAAAA 58.888 34.615 3.54 0.00 0.00 2.44
5447 6961 2.672195 GCTACCATCACAAGCCAAAAGC 60.672 50.000 0.00 0.00 44.25 3.51
5448 6962 3.221964 GCTACCATCACAAGCCAAAAG 57.778 47.619 0.00 0.00 0.00 2.27
5454 6968 1.421410 CGTCGGCTACCATCACAAGC 61.421 60.000 0.00 0.00 35.47 4.01
5474 6988 0.539518 ACCAAAACCAAACAGGGCAC 59.460 50.000 0.00 0.00 43.89 5.01
5475 6989 0.827368 GACCAAAACCAAACAGGGCA 59.173 50.000 0.00 0.00 43.89 5.36
5476 6990 0.827368 TGACCAAAACCAAACAGGGC 59.173 50.000 0.00 0.00 43.89 5.19
5477 6991 2.107366 AGTGACCAAAACCAAACAGGG 58.893 47.619 0.00 0.00 43.89 4.45
5478 6992 2.495669 ACAGTGACCAAAACCAAACAGG 59.504 45.455 0.00 0.00 45.67 4.00
5479 6993 3.730662 CGACAGTGACCAAAACCAAACAG 60.731 47.826 0.00 0.00 0.00 3.16
5480 6994 2.162608 CGACAGTGACCAAAACCAAACA 59.837 45.455 0.00 0.00 0.00 2.83
5481 6995 2.420722 TCGACAGTGACCAAAACCAAAC 59.579 45.455 0.00 0.00 0.00 2.93
5482 6996 2.712709 TCGACAGTGACCAAAACCAAA 58.287 42.857 0.00 0.00 0.00 3.28
5483 6997 2.404923 TCGACAGTGACCAAAACCAA 57.595 45.000 0.00 0.00 0.00 3.67
5484 6998 2.158885 TCATCGACAGTGACCAAAACCA 60.159 45.455 0.00 0.00 0.00 3.67
5485 6999 2.480419 CTCATCGACAGTGACCAAAACC 59.520 50.000 0.00 0.00 0.00 3.27
5486 7000 3.390135 TCTCATCGACAGTGACCAAAAC 58.610 45.455 0.00 0.00 0.00 2.43
5501 7015 1.273886 GGCCCTAATCGTCCTCTCATC 59.726 57.143 0.00 0.00 0.00 2.92
5502 7016 1.133009 AGGCCCTAATCGTCCTCTCAT 60.133 52.381 0.00 0.00 0.00 2.90
5599 7117 1.982395 AACAGTCCATCGCCGAGGA 60.982 57.895 0.00 0.31 0.00 3.71
5600 7118 1.811266 CAACAGTCCATCGCCGAGG 60.811 63.158 0.00 0.00 0.00 4.63
5602 7120 0.948623 CAACAACAGTCCATCGCCGA 60.949 55.000 0.00 0.00 0.00 5.54
5603 7121 1.497278 CAACAACAGTCCATCGCCG 59.503 57.895 0.00 0.00 0.00 6.46
5604 7122 1.210155 GCAACAACAGTCCATCGCC 59.790 57.895 0.00 0.00 0.00 5.54
5605 7123 0.110056 CAGCAACAACAGTCCATCGC 60.110 55.000 0.00 0.00 0.00 4.58
5606 7124 1.229428 ACAGCAACAACAGTCCATCG 58.771 50.000 0.00 0.00 0.00 3.84
5728 7247 1.293498 CAGTAACCCGAGCAGCTGT 59.707 57.895 16.64 1.59 0.00 4.40
5734 7253 1.448013 GGCAGACAGTAACCCGAGC 60.448 63.158 0.00 0.00 0.00 5.03
5735 7254 1.153823 CGGCAGACAGTAACCCGAG 60.154 63.158 0.00 0.00 41.34 4.63
5736 7255 2.642254 CCGGCAGACAGTAACCCGA 61.642 63.158 6.78 0.00 41.34 5.14
5737 7256 2.125673 CCGGCAGACAGTAACCCG 60.126 66.667 0.00 0.00 38.71 5.28
5804 7323 3.941188 CTGTGTGCGGGTCTGGGT 61.941 66.667 0.00 0.00 0.00 4.51
5832 7351 5.369833 GCATAGTAGATAGATAGCCGAGGA 58.630 45.833 0.00 0.00 0.00 3.71
5837 7356 7.004086 AGATCAGGCATAGTAGATAGATAGCC 58.996 42.308 0.00 0.00 41.08 3.93
5838 7357 7.939039 AGAGATCAGGCATAGTAGATAGATAGC 59.061 40.741 0.00 0.00 0.00 2.97
5839 7358 9.276590 CAGAGATCAGGCATAGTAGATAGATAG 57.723 40.741 0.00 0.00 0.00 2.08
5840 7359 7.719193 GCAGAGATCAGGCATAGTAGATAGATA 59.281 40.741 0.00 0.00 0.00 1.98
5841 7360 6.547141 GCAGAGATCAGGCATAGTAGATAGAT 59.453 42.308 0.00 0.00 0.00 1.98
5842 7361 5.885352 GCAGAGATCAGGCATAGTAGATAGA 59.115 44.000 0.00 0.00 0.00 1.98
5843 7362 5.887598 AGCAGAGATCAGGCATAGTAGATAG 59.112 44.000 0.00 0.00 0.00 2.08
5844 7363 5.825532 AGCAGAGATCAGGCATAGTAGATA 58.174 41.667 0.00 0.00 0.00 1.98
5845 7364 4.676109 AGCAGAGATCAGGCATAGTAGAT 58.324 43.478 0.00 0.00 0.00 1.98
5846 7365 4.078537 GAGCAGAGATCAGGCATAGTAGA 58.921 47.826 0.00 0.00 0.00 2.59
5849 7368 2.629137 CAGAGCAGAGATCAGGCATAGT 59.371 50.000 0.00 0.00 0.00 2.12
5852 7371 1.498264 ACAGAGCAGAGATCAGGCAT 58.502 50.000 0.00 0.00 0.00 4.40
5861 7380 1.739562 GCCGTGGAACAGAGCAGAG 60.740 63.158 0.00 0.00 41.80 3.35
5865 7384 0.530870 GGATAGCCGTGGAACAGAGC 60.531 60.000 0.00 0.00 41.80 4.09
5870 7389 2.417719 GATGATGGATAGCCGTGGAAC 58.582 52.381 0.00 0.00 36.79 3.62
5887 7406 6.204301 AGAGAAAATTATCTGCATCCACGATG 59.796 38.462 0.00 0.00 42.37 3.84
5888 7407 6.294473 AGAGAAAATTATCTGCATCCACGAT 58.706 36.000 0.00 0.00 0.00 3.73
5890 7409 5.998454 AGAGAAAATTATCTGCATCCACG 57.002 39.130 0.00 0.00 0.00 4.94
5892 7411 7.568349 AGTGTAGAGAAAATTATCTGCATCCA 58.432 34.615 10.87 0.00 41.72 3.41
5893 7412 7.095857 CGAGTGTAGAGAAAATTATCTGCATCC 60.096 40.741 10.87 6.27 41.72 3.51
5894 7413 7.649705 TCGAGTGTAGAGAAAATTATCTGCATC 59.350 37.037 10.87 8.89 41.72 3.91
5895 7414 7.492524 TCGAGTGTAGAGAAAATTATCTGCAT 58.507 34.615 10.87 2.56 41.72 3.96
5896 7415 6.863275 TCGAGTGTAGAGAAAATTATCTGCA 58.137 36.000 4.76 4.76 38.48 4.41
5897 7416 7.649705 TGATCGAGTGTAGAGAAAATTATCTGC 59.350 37.037 0.72 0.24 32.76 4.26
5936 7455 8.253810 GGAGGTAGTAGTTAAAATCCGTAAAGT 58.746 37.037 0.00 0.00 0.00 2.66
5937 7456 7.433425 CGGAGGTAGTAGTTAAAATCCGTAAAG 59.567 40.741 0.00 0.00 42.58 1.85
5938 7457 7.257722 CGGAGGTAGTAGTTAAAATCCGTAAA 58.742 38.462 0.00 0.00 42.58 2.01
5939 7458 6.795399 CGGAGGTAGTAGTTAAAATCCGTAA 58.205 40.000 0.00 0.00 42.58 3.18
5940 7459 6.377327 CGGAGGTAGTAGTTAAAATCCGTA 57.623 41.667 0.00 0.00 42.58 4.02
5941 7460 5.254339 CGGAGGTAGTAGTTAAAATCCGT 57.746 43.478 0.00 0.00 42.58 4.69
5943 7462 6.045318 GGAACGGAGGTAGTAGTTAAAATCC 58.955 44.000 0.00 0.00 0.00 3.01
5944 7463 6.871844 AGGAACGGAGGTAGTAGTTAAAATC 58.128 40.000 0.00 0.00 0.00 2.17
5945 7464 6.864151 AGGAACGGAGGTAGTAGTTAAAAT 57.136 37.500 0.00 0.00 0.00 1.82
5946 7465 7.775053 TTAGGAACGGAGGTAGTAGTTAAAA 57.225 36.000 0.00 0.00 0.00 1.52
5947 7466 7.775053 TTTAGGAACGGAGGTAGTAGTTAAA 57.225 36.000 0.00 0.00 0.00 1.52
5948 7467 7.961326 ATTTAGGAACGGAGGTAGTAGTTAA 57.039 36.000 0.00 0.00 0.00 2.01
5950 7469 9.646522 TTATATTTAGGAACGGAGGTAGTAGTT 57.353 33.333 0.00 0.00 0.00 2.24
5951 7470 9.294614 CTTATATTTAGGAACGGAGGTAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
5952 7471 9.294614 ACTTATATTTAGGAACGGAGGTAGTAG 57.705 37.037 0.00 0.00 0.00 2.57
5953 7472 9.646522 AACTTATATTTAGGAACGGAGGTAGTA 57.353 33.333 0.00 0.00 0.00 1.82
5954 7473 8.544687 AACTTATATTTAGGAACGGAGGTAGT 57.455 34.615 0.00 0.00 0.00 2.73
5955 7474 9.828039 AAAACTTATATTTAGGAACGGAGGTAG 57.172 33.333 0.00 0.00 0.00 3.18
6016 7535 8.044908 TCCCTGCGTTTCTAAATATAAGTTCTT 58.955 33.333 0.00 0.00 0.00 2.52
6018 7537 7.494952 ACTCCCTGCGTTTCTAAATATAAGTTC 59.505 37.037 0.00 0.00 0.00 3.01
6021 7540 8.142551 ACTACTCCCTGCGTTTCTAAATATAAG 58.857 37.037 0.00 0.00 0.00 1.73
6030 7585 2.633481 AGAAACTACTCCCTGCGTTTCT 59.367 45.455 9.66 9.66 46.23 2.52
6031 7586 3.041508 AGAAACTACTCCCTGCGTTTC 57.958 47.619 0.00 0.00 43.24 2.78
6032 7587 4.820894 ATAGAAACTACTCCCTGCGTTT 57.179 40.909 0.00 0.00 32.76 3.60
6033 7588 7.778185 ATATATAGAAACTACTCCCTGCGTT 57.222 36.000 0.00 0.00 0.00 4.84
6046 7601 9.798885 GTCACGCTTCATTGAATATATAGAAAC 57.201 33.333 0.00 0.00 0.00 2.78
6058 7613 5.961272 TCATAACTAGTCACGCTTCATTGA 58.039 37.500 0.00 0.00 0.00 2.57
6059 7614 6.256539 ACATCATAACTAGTCACGCTTCATTG 59.743 38.462 0.00 0.00 0.00 2.82
6060 7615 6.341316 ACATCATAACTAGTCACGCTTCATT 58.659 36.000 0.00 0.00 0.00 2.57
6061 7616 5.907207 ACATCATAACTAGTCACGCTTCAT 58.093 37.500 0.00 0.00 0.00 2.57
6062 7617 5.324784 ACATCATAACTAGTCACGCTTCA 57.675 39.130 0.00 0.00 0.00 3.02
6064 7619 5.067936 AGCTACATCATAACTAGTCACGCTT 59.932 40.000 0.00 0.00 0.00 4.68
6065 7620 4.580995 AGCTACATCATAACTAGTCACGCT 59.419 41.667 0.00 0.00 0.00 5.07
6066 7621 4.861210 AGCTACATCATAACTAGTCACGC 58.139 43.478 0.00 0.00 0.00 5.34
6067 7622 6.072948 AGCTAGCTACATCATAACTAGTCACG 60.073 42.308 17.69 0.00 34.21 4.35
6069 7624 6.431543 GGAGCTAGCTACATCATAACTAGTCA 59.568 42.308 22.69 0.00 34.21 3.41
6070 7625 6.431543 TGGAGCTAGCTACATCATAACTAGTC 59.568 42.308 26.30 3.22 30.77 2.59
6077 7647 6.283694 CAAAACTGGAGCTAGCTACATCATA 58.716 40.000 29.75 6.94 36.14 2.15
6142 7713 0.539051 GCATAGCTAGATCCGGGCAT 59.461 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.