Multiple sequence alignment - TraesCS3D01G302200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G302200 chr3D 100.000 2628 0 0 1 2628 416574625 416577252 0.000000e+00 4854.0
1 TraesCS3D01G302200 chr3D 83.580 877 82 35 1036 1899 416951683 416952510 0.000000e+00 765.0
2 TraesCS3D01G302200 chr3D 82.044 685 59 40 382 1024 416949010 416949672 2.320000e-145 525.0
3 TraesCS3D01G302200 chr3D 91.467 375 30 2 1263 1637 416915592 416915964 5.020000e-142 514.0
4 TraesCS3D01G302200 chr3D 78.901 801 96 45 842 1602 416562108 416562875 2.370000e-130 475.0
5 TraesCS3D01G302200 chr3D 91.589 214 9 3 382 595 416914181 416914385 1.190000e-73 287.0
6 TraesCS3D01G302200 chr3D 81.343 402 27 30 854 1229 416915220 416915599 1.540000e-72 283.0
7 TraesCS3D01G302200 chr3D 81.818 308 27 17 1627 1932 416563042 416563322 5.660000e-57 231.0
8 TraesCS3D01G302200 chr3D 94.203 138 4 2 726 862 416914479 416914613 9.530000e-50 207.0
9 TraesCS3D01G302200 chr3D 86.486 111 13 2 1667 1777 416936623 416936515 1.280000e-23 121.0
10 TraesCS3D01G302200 chr3D 80.132 151 15 8 2290 2432 416952817 416952960 5.990000e-17 99.0
11 TraesCS3D01G302200 chr3B 92.646 2271 102 32 382 2628 542929032 542931261 0.000000e+00 3208.0
12 TraesCS3D01G302200 chr3B 91.111 1800 92 25 877 2628 542897480 542899259 0.000000e+00 2375.0
13 TraesCS3D01G302200 chr3B 80.874 1098 100 66 382 1418 543173493 543174541 0.000000e+00 763.0
14 TraesCS3D01G302200 chr3B 88.491 530 47 6 1176 1705 543067714 543068229 1.720000e-176 628.0
15 TraesCS3D01G302200 chr3B 84.211 532 37 15 382 895 542896967 542897469 8.510000e-130 473.0
16 TraesCS3D01G302200 chr3B 79.725 291 31 13 1675 1963 542810090 542810354 4.470000e-43 185.0
17 TraesCS3D01G302200 chr3B 90.441 136 5 1 382 509 543051965 543052100 3.480000e-39 172.0
18 TraesCS3D01G302200 chr3B 89.691 97 6 1 1672 1768 542749078 542749170 1.280000e-23 121.0
19 TraesCS3D01G302200 chr3B 85.586 111 14 2 1667 1777 543095302 543095194 5.940000e-22 115.0
20 TraesCS3D01G302200 chr3A 87.032 1550 106 50 382 1892 533995700 533994207 0.000000e+00 1661.0
21 TraesCS3D01G302200 chr3A 84.685 111 12 2 1667 1777 533979837 533979732 3.580000e-19 106.0
22 TraesCS3D01G302200 chr5B 79.687 1595 160 72 602 2086 511292022 511293562 0.000000e+00 1000.0
23 TraesCS3D01G302200 chr5B 77.885 208 37 7 2330 2528 511293747 511293954 1.280000e-23 121.0
24 TraesCS3D01G302200 chr5A 85.401 774 68 21 877 1618 536970539 536971299 0.000000e+00 761.0
25 TraesCS3D01G302200 chr5A 80.905 199 30 7 2337 2528 536973610 536973807 1.630000e-32 150.0
26 TraesCS3D01G302200 chr5D 82.051 897 98 27 774 1618 423474090 423474975 0.000000e+00 706.0
27 TraesCS3D01G302200 chr5D 94.587 351 17 2 1 349 450669397 450669747 2.300000e-150 542.0
28 TraesCS3D01G302200 chr5D 78.319 452 60 26 1667 2099 423475064 423475496 9.330000e-65 257.0
29 TraesCS3D01G302200 chr5D 78.889 180 30 6 2280 2452 423475619 423475797 5.940000e-22 115.0
30 TraesCS3D01G302200 chr5D 97.368 38 1 0 677 714 423473699 423473736 6.070000e-07 65.8
31 TraesCS3D01G302200 chr2D 94.872 351 16 2 1 349 651598824 651598474 4.950000e-152 547.0
32 TraesCS3D01G302200 chr7D 94.318 352 18 2 1 350 568935340 568935691 2.980000e-149 538.0
33 TraesCS3D01G302200 chrUn 94.017 351 19 2 1 349 108901534 108901184 4.980000e-147 531.0
34 TraesCS3D01G302200 chr2B 93.557 357 21 2 1 355 673196027 673195671 4.980000e-147 531.0
35 TraesCS3D01G302200 chr2B 93.557 357 20 3 1 355 173304487 173304132 1.790000e-146 529.0
36 TraesCS3D01G302200 chr1B 94.034 352 18 3 1 349 25468380 25468731 4.980000e-147 531.0
37 TraesCS3D01G302200 chr4A 93.768 353 20 2 1 351 537339350 537339702 1.790000e-146 529.0
38 TraesCS3D01G302200 chr4B 93.277 357 22 2 1 355 71810869 71810513 2.320000e-145 525.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G302200 chr3D 416574625 416577252 2627 False 4854.00 4854 100.000000 1 2628 1 chr3D.!!$F1 2627
1 TraesCS3D01G302200 chr3D 416949010 416952960 3950 False 463.00 765 81.918667 382 2432 3 chr3D.!!$F4 2050
2 TraesCS3D01G302200 chr3D 416562108 416563322 1214 False 353.00 475 80.359500 842 1932 2 chr3D.!!$F2 1090
3 TraesCS3D01G302200 chr3D 416914181 416915964 1783 False 322.75 514 89.650500 382 1637 4 chr3D.!!$F3 1255
4 TraesCS3D01G302200 chr3B 542929032 542931261 2229 False 3208.00 3208 92.646000 382 2628 1 chr3B.!!$F3 2246
5 TraesCS3D01G302200 chr3B 542896967 542899259 2292 False 1424.00 2375 87.661000 382 2628 2 chr3B.!!$F7 2246
6 TraesCS3D01G302200 chr3B 543173493 543174541 1048 False 763.00 763 80.874000 382 1418 1 chr3B.!!$F6 1036
7 TraesCS3D01G302200 chr3B 543067714 543068229 515 False 628.00 628 88.491000 1176 1705 1 chr3B.!!$F5 529
8 TraesCS3D01G302200 chr3A 533994207 533995700 1493 True 1661.00 1661 87.032000 382 1892 1 chr3A.!!$R2 1510
9 TraesCS3D01G302200 chr5B 511292022 511293954 1932 False 560.50 1000 78.786000 602 2528 2 chr5B.!!$F1 1926
10 TraesCS3D01G302200 chr5A 536970539 536973807 3268 False 455.50 761 83.153000 877 2528 2 chr5A.!!$F1 1651
11 TraesCS3D01G302200 chr5D 423473699 423475797 2098 False 285.95 706 84.156750 677 2452 4 chr5D.!!$F2 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.030773 TATTCCGAGCTACTGCGCTG 59.969 55.0 13.23 13.23 45.42 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 5307 1.13952 GCCAGCAAAGCATTACCCG 59.86 57.895 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.889589 ACTGCAGAAATATTTGGCTTTTAAC 57.110 32.000 23.35 0.00 0.00 2.01
25 26 7.441017 ACTGCAGAAATATTTGGCTTTTAACA 58.559 30.769 23.35 1.34 0.00 2.41
26 27 7.599998 ACTGCAGAAATATTTGGCTTTTAACAG 59.400 33.333 23.35 10.10 0.00 3.16
27 28 7.665690 TGCAGAAATATTTGGCTTTTAACAGA 58.334 30.769 17.54 0.00 0.00 3.41
28 29 8.147058 TGCAGAAATATTTGGCTTTTAACAGAA 58.853 29.630 17.54 0.00 0.00 3.02
29 30 8.435430 GCAGAAATATTTGGCTTTTAACAGAAC 58.565 33.333 5.17 0.00 0.00 3.01
30 31 9.474920 CAGAAATATTTGGCTTTTAACAGAACA 57.525 29.630 5.17 0.00 0.00 3.18
33 34 9.606631 AAATATTTGGCTTTTAACAGAACAACA 57.393 25.926 0.00 0.00 0.00 3.33
34 35 9.606631 AATATTTGGCTTTTAACAGAACAACAA 57.393 25.926 0.00 0.00 0.00 2.83
35 36 6.713792 TTTGGCTTTTAACAGAACAACAAC 57.286 33.333 0.00 0.00 0.00 3.32
36 37 5.652994 TGGCTTTTAACAGAACAACAACT 57.347 34.783 0.00 0.00 0.00 3.16
37 38 6.761099 TGGCTTTTAACAGAACAACAACTA 57.239 33.333 0.00 0.00 0.00 2.24
38 39 7.341445 TGGCTTTTAACAGAACAACAACTAT 57.659 32.000 0.00 0.00 0.00 2.12
39 40 7.777095 TGGCTTTTAACAGAACAACAACTATT 58.223 30.769 0.00 0.00 0.00 1.73
40 41 7.918562 TGGCTTTTAACAGAACAACAACTATTC 59.081 33.333 0.00 0.00 0.00 1.75
41 42 7.918562 GGCTTTTAACAGAACAACAACTATTCA 59.081 33.333 0.00 0.00 0.00 2.57
42 43 9.463443 GCTTTTAACAGAACAACAACTATTCAT 57.537 29.630 0.00 0.00 0.00 2.57
65 66 3.569250 TTTGCAGGTTTTATTCCGAGC 57.431 42.857 0.00 0.00 0.00 5.03
66 67 2.489938 TGCAGGTTTTATTCCGAGCT 57.510 45.000 0.00 0.00 34.06 4.09
67 68 3.620427 TGCAGGTTTTATTCCGAGCTA 57.380 42.857 0.00 0.00 34.06 3.32
68 69 3.267483 TGCAGGTTTTATTCCGAGCTAC 58.733 45.455 0.00 0.00 34.06 3.58
69 70 3.055385 TGCAGGTTTTATTCCGAGCTACT 60.055 43.478 0.00 0.00 34.06 2.57
70 71 3.309954 GCAGGTTTTATTCCGAGCTACTG 59.690 47.826 0.00 0.00 0.00 2.74
71 72 3.309954 CAGGTTTTATTCCGAGCTACTGC 59.690 47.826 0.00 0.00 40.05 4.40
72 73 2.284417 GGTTTTATTCCGAGCTACTGCG 59.716 50.000 0.00 0.00 45.42 5.18
73 74 1.567504 TTTATTCCGAGCTACTGCGC 58.432 50.000 0.00 0.00 45.42 6.09
74 75 0.744874 TTATTCCGAGCTACTGCGCT 59.255 50.000 9.73 0.00 45.42 5.92
75 76 0.030773 TATTCCGAGCTACTGCGCTG 59.969 55.000 13.23 13.23 45.42 5.18
76 77 1.667154 ATTCCGAGCTACTGCGCTGA 61.667 55.000 21.92 3.90 45.42 4.26
77 78 1.667154 TTCCGAGCTACTGCGCTGAT 61.667 55.000 21.92 7.85 45.42 2.90
78 79 1.659954 CCGAGCTACTGCGCTGATC 60.660 63.158 21.92 9.55 45.42 2.92
79 80 1.659954 CGAGCTACTGCGCTGATCC 60.660 63.158 21.92 7.86 45.42 3.36
80 81 1.659954 GAGCTACTGCGCTGATCCG 60.660 63.158 21.92 6.87 45.42 4.18
81 82 2.105128 GCTACTGCGCTGATCCGT 59.895 61.111 21.92 0.07 0.00 4.69
82 83 1.101635 AGCTACTGCGCTGATCCGTA 61.102 55.000 21.92 1.38 45.42 4.02
83 84 0.039074 GCTACTGCGCTGATCCGTAT 60.039 55.000 21.92 0.00 0.00 3.06
84 85 1.691127 CTACTGCGCTGATCCGTATG 58.309 55.000 21.92 0.00 0.00 2.39
85 86 1.001268 CTACTGCGCTGATCCGTATGT 60.001 52.381 21.92 0.00 0.00 2.29
86 87 0.528466 ACTGCGCTGATCCGTATGTG 60.528 55.000 21.92 0.00 0.00 3.21
87 88 1.217585 CTGCGCTGATCCGTATGTGG 61.218 60.000 9.73 0.00 0.00 4.17
88 89 1.227263 GCGCTGATCCGTATGTGGT 60.227 57.895 0.00 0.00 0.00 4.16
89 90 1.215655 GCGCTGATCCGTATGTGGTC 61.216 60.000 0.00 0.00 0.00 4.02
90 91 0.934901 CGCTGATCCGTATGTGGTCG 60.935 60.000 0.00 0.00 0.00 4.79
91 92 0.102481 GCTGATCCGTATGTGGTCGT 59.898 55.000 0.00 0.00 0.00 4.34
92 93 1.470979 GCTGATCCGTATGTGGTCGTT 60.471 52.381 0.00 0.00 0.00 3.85
93 94 2.223641 GCTGATCCGTATGTGGTCGTTA 60.224 50.000 0.00 0.00 0.00 3.18
94 95 3.369385 CTGATCCGTATGTGGTCGTTAC 58.631 50.000 0.00 0.00 0.00 2.50
95 96 3.018856 TGATCCGTATGTGGTCGTTACT 58.981 45.455 0.00 0.00 0.00 2.24
96 97 3.065786 TGATCCGTATGTGGTCGTTACTC 59.934 47.826 0.00 0.00 0.00 2.59
97 98 2.435422 TCCGTATGTGGTCGTTACTCA 58.565 47.619 0.00 0.00 0.00 3.41
98 99 2.162208 TCCGTATGTGGTCGTTACTCAC 59.838 50.000 0.00 0.00 0.00 3.51
99 100 2.163010 CCGTATGTGGTCGTTACTCACT 59.837 50.000 0.00 0.00 31.73 3.41
100 101 3.423571 CGTATGTGGTCGTTACTCACTC 58.576 50.000 0.00 0.00 31.73 3.51
101 102 3.120095 CGTATGTGGTCGTTACTCACTCA 60.120 47.826 0.00 0.00 31.73 3.41
102 103 4.614306 CGTATGTGGTCGTTACTCACTCAA 60.614 45.833 0.00 0.00 31.73 3.02
103 104 3.804786 TGTGGTCGTTACTCACTCAAA 57.195 42.857 0.00 0.00 31.73 2.69
104 105 3.450578 TGTGGTCGTTACTCACTCAAAC 58.549 45.455 0.00 0.00 31.73 2.93
105 106 2.470257 GTGGTCGTTACTCACTCAAACG 59.530 50.000 0.67 0.67 45.46 3.60
106 107 2.056577 GGTCGTTACTCACTCAAACGG 58.943 52.381 6.95 0.00 44.51 4.44
107 108 2.287788 GGTCGTTACTCACTCAAACGGA 60.288 50.000 6.95 0.00 44.51 4.69
115 116 2.045926 CTCAAACGGAGGCCAGGG 60.046 66.667 5.01 0.00 40.13 4.45
116 117 2.528127 TCAAACGGAGGCCAGGGA 60.528 61.111 5.01 0.00 0.00 4.20
117 118 2.045926 CAAACGGAGGCCAGGGAG 60.046 66.667 5.01 0.00 0.00 4.30
118 119 4.035102 AAACGGAGGCCAGGGAGC 62.035 66.667 5.01 0.00 0.00 4.70
122 123 4.035102 GGAGGCCAGGGAGCGTTT 62.035 66.667 5.01 0.00 0.00 3.60
123 124 2.747855 GAGGCCAGGGAGCGTTTG 60.748 66.667 5.01 0.00 0.00 2.93
124 125 4.351054 AGGCCAGGGAGCGTTTGG 62.351 66.667 5.01 0.00 35.06 3.28
125 126 4.660938 GGCCAGGGAGCGTTTGGT 62.661 66.667 0.00 0.00 34.43 3.67
126 127 2.597510 GCCAGGGAGCGTTTGGTT 60.598 61.111 0.00 0.00 34.43 3.67
127 128 1.302993 GCCAGGGAGCGTTTGGTTA 60.303 57.895 0.00 0.00 34.43 2.85
128 129 1.583495 GCCAGGGAGCGTTTGGTTAC 61.583 60.000 0.00 0.00 34.43 2.50
129 130 0.036306 CCAGGGAGCGTTTGGTTACT 59.964 55.000 0.00 0.00 0.00 2.24
130 131 1.156736 CAGGGAGCGTTTGGTTACTG 58.843 55.000 0.00 0.00 0.00 2.74
131 132 0.036306 AGGGAGCGTTTGGTTACTGG 59.964 55.000 0.00 0.00 0.00 4.00
132 133 0.035739 GGGAGCGTTTGGTTACTGGA 59.964 55.000 0.00 0.00 0.00 3.86
133 134 1.339727 GGGAGCGTTTGGTTACTGGAT 60.340 52.381 0.00 0.00 0.00 3.41
134 135 2.007608 GGAGCGTTTGGTTACTGGATC 58.992 52.381 0.00 0.00 0.00 3.36
135 136 2.354805 GGAGCGTTTGGTTACTGGATCT 60.355 50.000 0.00 0.00 0.00 2.75
136 137 2.673368 GAGCGTTTGGTTACTGGATCTG 59.327 50.000 0.00 0.00 0.00 2.90
137 138 2.038557 AGCGTTTGGTTACTGGATCTGT 59.961 45.455 0.00 0.00 0.00 3.41
138 139 2.415512 GCGTTTGGTTACTGGATCTGTC 59.584 50.000 0.00 0.00 0.00 3.51
139 140 3.000727 CGTTTGGTTACTGGATCTGTCC 58.999 50.000 0.00 0.00 45.31 4.02
147 148 3.221222 GGATCTGTCCGGTGGGAG 58.779 66.667 0.00 0.00 44.97 4.30
148 149 1.381327 GGATCTGTCCGGTGGGAGA 60.381 63.158 0.00 0.00 44.97 3.71
149 150 0.760945 GGATCTGTCCGGTGGGAGAT 60.761 60.000 0.00 4.16 44.97 2.75
150 151 0.390860 GATCTGTCCGGTGGGAGATG 59.609 60.000 0.00 0.00 44.97 2.90
151 152 1.050988 ATCTGTCCGGTGGGAGATGG 61.051 60.000 0.00 0.00 44.97 3.51
152 153 1.990060 CTGTCCGGTGGGAGATGGT 60.990 63.158 0.00 0.00 44.97 3.55
153 154 0.686441 CTGTCCGGTGGGAGATGGTA 60.686 60.000 0.00 0.00 44.97 3.25
154 155 0.686441 TGTCCGGTGGGAGATGGTAG 60.686 60.000 0.00 0.00 44.97 3.18
155 156 1.760875 TCCGGTGGGAGATGGTAGC 60.761 63.158 0.00 0.00 37.43 3.58
156 157 2.063979 CCGGTGGGAGATGGTAGCA 61.064 63.158 0.00 0.00 34.06 3.49
157 158 1.144057 CGGTGGGAGATGGTAGCAC 59.856 63.158 0.00 0.00 0.00 4.40
158 159 1.144057 GGTGGGAGATGGTAGCACG 59.856 63.158 0.00 0.00 0.00 5.34
159 160 1.144057 GTGGGAGATGGTAGCACGG 59.856 63.158 0.00 0.00 0.00 4.94
160 161 2.063979 TGGGAGATGGTAGCACGGG 61.064 63.158 0.00 0.00 0.00 5.28
161 162 1.760875 GGGAGATGGTAGCACGGGA 60.761 63.158 0.00 0.00 0.00 5.14
162 163 1.122019 GGGAGATGGTAGCACGGGAT 61.122 60.000 0.00 0.00 0.00 3.85
163 164 1.629043 GGAGATGGTAGCACGGGATA 58.371 55.000 0.00 0.00 0.00 2.59
164 165 2.180276 GGAGATGGTAGCACGGGATAT 58.820 52.381 0.00 0.00 0.00 1.63
165 166 2.166664 GGAGATGGTAGCACGGGATATC 59.833 54.545 0.00 0.00 0.00 1.63
166 167 3.093057 GAGATGGTAGCACGGGATATCT 58.907 50.000 0.00 0.00 0.00 1.98
167 168 3.511477 AGATGGTAGCACGGGATATCTT 58.489 45.455 0.00 0.00 0.00 2.40
168 169 3.511934 AGATGGTAGCACGGGATATCTTC 59.488 47.826 1.05 1.05 0.00 2.87
169 170 2.673258 TGGTAGCACGGGATATCTTCA 58.327 47.619 2.05 0.00 0.00 3.02
170 171 3.035363 TGGTAGCACGGGATATCTTCAA 58.965 45.455 2.05 0.00 0.00 2.69
171 172 3.181469 TGGTAGCACGGGATATCTTCAAC 60.181 47.826 2.05 0.00 0.00 3.18
172 173 2.622064 AGCACGGGATATCTTCAACC 57.378 50.000 2.05 0.00 0.00 3.77
175 176 2.914379 CGGGATATCTTCAACCGGC 58.086 57.895 0.00 0.00 40.79 6.13
176 177 0.393077 CGGGATATCTTCAACCGGCT 59.607 55.000 0.00 0.00 40.79 5.52
177 178 1.202651 CGGGATATCTTCAACCGGCTT 60.203 52.381 0.00 0.00 40.79 4.35
178 179 2.222027 GGGATATCTTCAACCGGCTTG 58.778 52.381 0.00 5.85 0.00 4.01
179 180 2.222027 GGATATCTTCAACCGGCTTGG 58.778 52.381 0.00 0.00 46.41 3.61
180 181 2.158813 GGATATCTTCAACCGGCTTGGA 60.159 50.000 0.00 0.00 42.00 3.53
181 182 3.496870 GGATATCTTCAACCGGCTTGGAT 60.497 47.826 0.00 7.42 42.00 3.41
182 183 1.755179 ATCTTCAACCGGCTTGGATG 58.245 50.000 0.00 1.34 41.73 3.51
183 184 0.690192 TCTTCAACCGGCTTGGATGA 59.310 50.000 0.00 4.77 46.81 2.92
184 185 4.713946 TCAACCGGCTTGGATGAC 57.286 55.556 0.00 0.00 43.94 3.06
185 186 1.375396 TCAACCGGCTTGGATGACG 60.375 57.895 0.00 0.00 43.94 4.35
189 190 2.264480 CGGCTTGGATGACGGTCA 59.736 61.111 14.01 14.01 34.33 4.02
190 191 1.153369 CGGCTTGGATGACGGTCAT 60.153 57.895 22.84 22.84 40.34 3.06
191 192 1.431488 CGGCTTGGATGACGGTCATG 61.431 60.000 27.11 14.01 37.20 3.07
192 193 0.392998 GGCTTGGATGACGGTCATGT 60.393 55.000 27.11 6.13 37.20 3.21
193 194 1.134521 GGCTTGGATGACGGTCATGTA 60.135 52.381 27.11 13.12 37.20 2.29
194 195 2.627945 GCTTGGATGACGGTCATGTAA 58.372 47.619 27.11 18.78 37.20 2.41
195 196 3.206150 GCTTGGATGACGGTCATGTAAT 58.794 45.455 27.11 4.51 37.20 1.89
196 197 4.377021 GCTTGGATGACGGTCATGTAATA 58.623 43.478 27.11 6.78 37.20 0.98
197 198 4.997395 GCTTGGATGACGGTCATGTAATAT 59.003 41.667 27.11 2.93 37.20 1.28
198 199 5.106948 GCTTGGATGACGGTCATGTAATATG 60.107 44.000 27.11 11.55 37.20 1.78
199 200 5.799827 TGGATGACGGTCATGTAATATGA 57.200 39.130 27.11 0.00 37.20 2.15
200 201 6.358974 TGGATGACGGTCATGTAATATGAT 57.641 37.500 27.11 0.56 37.20 2.45
201 202 7.475137 TGGATGACGGTCATGTAATATGATA 57.525 36.000 27.11 0.00 37.20 2.15
202 203 7.547227 TGGATGACGGTCATGTAATATGATAG 58.453 38.462 27.11 0.00 37.20 2.08
203 204 6.980978 GGATGACGGTCATGTAATATGATAGG 59.019 42.308 27.11 0.00 37.20 2.57
204 205 5.720202 TGACGGTCATGTAATATGATAGGC 58.280 41.667 6.76 0.00 0.00 3.93
205 206 4.744570 ACGGTCATGTAATATGATAGGCG 58.255 43.478 0.00 0.00 0.00 5.52
206 207 4.461431 ACGGTCATGTAATATGATAGGCGA 59.539 41.667 0.00 0.00 0.00 5.54
207 208 5.127194 ACGGTCATGTAATATGATAGGCGAT 59.873 40.000 0.00 0.00 0.00 4.58
208 209 6.042777 CGGTCATGTAATATGATAGGCGATT 58.957 40.000 0.00 0.00 0.00 3.34
209 210 7.147966 ACGGTCATGTAATATGATAGGCGATTA 60.148 37.037 0.00 0.00 0.00 1.75
210 211 7.379797 CGGTCATGTAATATGATAGGCGATTAG 59.620 40.741 0.00 0.00 0.00 1.73
211 212 8.198109 GGTCATGTAATATGATAGGCGATTAGT 58.802 37.037 0.00 0.00 0.00 2.24
212 213 9.587772 GTCATGTAATATGATAGGCGATTAGTT 57.412 33.333 0.00 0.00 0.00 2.24
216 217 9.865321 TGTAATATGATAGGCGATTAGTTTACC 57.135 33.333 0.00 0.00 0.00 2.85
225 226 6.885922 AGGCGATTAGTTTACCTATCTTTGT 58.114 36.000 0.00 0.00 0.00 2.83
226 227 7.336396 AGGCGATTAGTTTACCTATCTTTGTT 58.664 34.615 0.00 0.00 0.00 2.83
227 228 8.480501 AGGCGATTAGTTTACCTATCTTTGTTA 58.519 33.333 0.00 0.00 0.00 2.41
228 229 9.269453 GGCGATTAGTTTACCTATCTTTGTTAT 57.731 33.333 0.00 0.00 0.00 1.89
232 233 9.914834 ATTAGTTTACCTATCTTTGTTATGCCA 57.085 29.630 0.00 0.00 0.00 4.92
233 234 7.865706 AGTTTACCTATCTTTGTTATGCCAG 57.134 36.000 0.00 0.00 0.00 4.85
234 235 6.318900 AGTTTACCTATCTTTGTTATGCCAGC 59.681 38.462 0.00 0.00 0.00 4.85
235 236 3.555966 ACCTATCTTTGTTATGCCAGCC 58.444 45.455 0.00 0.00 0.00 4.85
236 237 2.549754 CCTATCTTTGTTATGCCAGCCG 59.450 50.000 0.00 0.00 0.00 5.52
237 238 1.392589 ATCTTTGTTATGCCAGCCGG 58.607 50.000 0.00 0.00 0.00 6.13
238 239 0.037590 TCTTTGTTATGCCAGCCGGT 59.962 50.000 1.90 0.00 33.28 5.28
239 240 0.887933 CTTTGTTATGCCAGCCGGTT 59.112 50.000 1.90 0.00 33.28 4.44
240 241 0.600557 TTTGTTATGCCAGCCGGTTG 59.399 50.000 11.98 11.98 33.28 3.77
241 242 0.538516 TTGTTATGCCAGCCGGTTGT 60.539 50.000 17.69 1.06 33.28 3.32
242 243 1.240641 TGTTATGCCAGCCGGTTGTG 61.241 55.000 17.69 9.73 33.28 3.33
243 244 1.677300 TTATGCCAGCCGGTTGTGG 60.677 57.895 17.69 15.43 36.85 4.17
244 245 2.419011 TTATGCCAGCCGGTTGTGGT 62.419 55.000 17.69 4.80 36.10 4.16
245 246 2.419011 TATGCCAGCCGGTTGTGGTT 62.419 55.000 17.69 9.32 36.10 3.67
246 247 3.223589 GCCAGCCGGTTGTGGTTT 61.224 61.111 17.69 0.00 36.10 3.27
247 248 2.791868 GCCAGCCGGTTGTGGTTTT 61.792 57.895 17.69 0.00 36.10 2.43
248 249 1.067250 CCAGCCGGTTGTGGTTTTG 59.933 57.895 17.69 0.00 0.00 2.44
249 250 1.067250 CAGCCGGTTGTGGTTTTGG 59.933 57.895 10.61 0.00 0.00 3.28
250 251 2.131067 AGCCGGTTGTGGTTTTGGG 61.131 57.895 1.90 0.00 0.00 4.12
251 252 2.428085 GCCGGTTGTGGTTTTGGGT 61.428 57.895 1.90 0.00 0.00 4.51
252 253 1.737201 CCGGTTGTGGTTTTGGGTC 59.263 57.895 0.00 0.00 0.00 4.46
253 254 0.753848 CCGGTTGTGGTTTTGGGTCT 60.754 55.000 0.00 0.00 0.00 3.85
254 255 1.107945 CGGTTGTGGTTTTGGGTCTT 58.892 50.000 0.00 0.00 0.00 3.01
255 256 1.478916 CGGTTGTGGTTTTGGGTCTTT 59.521 47.619 0.00 0.00 0.00 2.52
256 257 2.093921 CGGTTGTGGTTTTGGGTCTTTT 60.094 45.455 0.00 0.00 0.00 2.27
257 258 3.266636 GGTTGTGGTTTTGGGTCTTTTG 58.733 45.455 0.00 0.00 0.00 2.44
258 259 3.307129 GGTTGTGGTTTTGGGTCTTTTGT 60.307 43.478 0.00 0.00 0.00 2.83
259 260 3.878160 TGTGGTTTTGGGTCTTTTGTC 57.122 42.857 0.00 0.00 0.00 3.18
260 261 3.436243 TGTGGTTTTGGGTCTTTTGTCT 58.564 40.909 0.00 0.00 0.00 3.41
261 262 3.835395 TGTGGTTTTGGGTCTTTTGTCTT 59.165 39.130 0.00 0.00 0.00 3.01
262 263 4.081917 TGTGGTTTTGGGTCTTTTGTCTTC 60.082 41.667 0.00 0.00 0.00 2.87
263 264 3.449377 TGGTTTTGGGTCTTTTGTCTTCC 59.551 43.478 0.00 0.00 0.00 3.46
264 265 3.490249 GGTTTTGGGTCTTTTGTCTTCCG 60.490 47.826 0.00 0.00 0.00 4.30
265 266 1.314730 TTGGGTCTTTTGTCTTCCGC 58.685 50.000 0.00 0.00 0.00 5.54
266 267 0.882927 TGGGTCTTTTGTCTTCCGCG 60.883 55.000 0.00 0.00 0.00 6.46
267 268 0.883370 GGGTCTTTTGTCTTCCGCGT 60.883 55.000 4.92 0.00 0.00 6.01
268 269 0.942252 GGTCTTTTGTCTTCCGCGTT 59.058 50.000 4.92 0.00 0.00 4.84
269 270 1.333791 GGTCTTTTGTCTTCCGCGTTG 60.334 52.381 4.92 0.00 0.00 4.10
270 271 1.329599 GTCTTTTGTCTTCCGCGTTGT 59.670 47.619 4.92 0.00 0.00 3.32
271 272 1.329292 TCTTTTGTCTTCCGCGTTGTG 59.671 47.619 4.92 0.00 0.00 3.33
272 273 0.378962 TTTTGTCTTCCGCGTTGTGG 59.621 50.000 4.92 0.00 33.99 4.17
273 274 2.054140 TTTGTCTTCCGCGTTGTGGC 62.054 55.000 4.92 0.00 32.51 5.01
274 275 2.665185 GTCTTCCGCGTTGTGGCT 60.665 61.111 4.92 0.00 32.51 4.75
275 276 2.357034 TCTTCCGCGTTGTGGCTC 60.357 61.111 4.92 0.00 32.51 4.70
276 277 2.357517 CTTCCGCGTTGTGGCTCT 60.358 61.111 4.92 0.00 32.51 4.09
277 278 1.961277 CTTCCGCGTTGTGGCTCTT 60.961 57.895 4.92 0.00 32.51 2.85
278 279 1.507141 CTTCCGCGTTGTGGCTCTTT 61.507 55.000 4.92 0.00 32.51 2.52
279 280 1.781025 TTCCGCGTTGTGGCTCTTTG 61.781 55.000 4.92 0.00 32.51 2.77
280 281 2.542907 CCGCGTTGTGGCTCTTTGT 61.543 57.895 4.92 0.00 0.00 2.83
281 282 1.369209 CGCGTTGTGGCTCTTTGTG 60.369 57.895 0.00 0.00 0.00 3.33
282 283 1.771073 CGCGTTGTGGCTCTTTGTGA 61.771 55.000 0.00 0.00 0.00 3.58
283 284 0.040958 GCGTTGTGGCTCTTTGTGAG 60.041 55.000 0.00 0.00 45.33 3.51
291 292 2.621763 CTCTTTGTGAGCTTGCCGT 58.378 52.632 0.00 0.00 35.84 5.68
292 293 0.947244 CTCTTTGTGAGCTTGCCGTT 59.053 50.000 0.00 0.00 35.84 4.44
293 294 2.143122 CTCTTTGTGAGCTTGCCGTTA 58.857 47.619 0.00 0.00 35.84 3.18
294 295 2.744202 CTCTTTGTGAGCTTGCCGTTAT 59.256 45.455 0.00 0.00 35.84 1.89
295 296 3.146066 TCTTTGTGAGCTTGCCGTTATT 58.854 40.909 0.00 0.00 0.00 1.40
296 297 3.568007 TCTTTGTGAGCTTGCCGTTATTT 59.432 39.130 0.00 0.00 0.00 1.40
297 298 4.037446 TCTTTGTGAGCTTGCCGTTATTTT 59.963 37.500 0.00 0.00 0.00 1.82
298 299 3.281341 TGTGAGCTTGCCGTTATTTTG 57.719 42.857 0.00 0.00 0.00 2.44
299 300 2.621055 TGTGAGCTTGCCGTTATTTTGT 59.379 40.909 0.00 0.00 0.00 2.83
300 301 3.067461 TGTGAGCTTGCCGTTATTTTGTT 59.933 39.130 0.00 0.00 0.00 2.83
301 302 4.048504 GTGAGCTTGCCGTTATTTTGTTT 58.951 39.130 0.00 0.00 0.00 2.83
302 303 4.506288 GTGAGCTTGCCGTTATTTTGTTTT 59.494 37.500 0.00 0.00 0.00 2.43
303 304 4.742659 TGAGCTTGCCGTTATTTTGTTTTC 59.257 37.500 0.00 0.00 0.00 2.29
304 305 4.688021 AGCTTGCCGTTATTTTGTTTTCA 58.312 34.783 0.00 0.00 0.00 2.69
305 306 4.744631 AGCTTGCCGTTATTTTGTTTTCAG 59.255 37.500 0.00 0.00 0.00 3.02
306 307 4.742659 GCTTGCCGTTATTTTGTTTTCAGA 59.257 37.500 0.00 0.00 0.00 3.27
307 308 5.332280 GCTTGCCGTTATTTTGTTTTCAGAC 60.332 40.000 0.00 0.00 0.00 3.51
308 309 5.508200 TGCCGTTATTTTGTTTTCAGACT 57.492 34.783 0.00 0.00 0.00 3.24
309 310 6.621316 TGCCGTTATTTTGTTTTCAGACTA 57.379 33.333 0.00 0.00 0.00 2.59
310 311 7.209471 TGCCGTTATTTTGTTTTCAGACTAT 57.791 32.000 0.00 0.00 0.00 2.12
311 312 8.325421 TGCCGTTATTTTGTTTTCAGACTATA 57.675 30.769 0.00 0.00 0.00 1.31
312 313 8.784994 TGCCGTTATTTTGTTTTCAGACTATAA 58.215 29.630 0.00 0.00 0.00 0.98
313 314 9.274065 GCCGTTATTTTGTTTTCAGACTATAAG 57.726 33.333 0.00 0.00 0.00 1.73
320 321 8.974060 TTTGTTTTCAGACTATAAGACCTTGT 57.026 30.769 0.00 0.00 0.00 3.16
321 322 8.974060 TTGTTTTCAGACTATAAGACCTTGTT 57.026 30.769 0.00 0.00 0.00 2.83
326 327 9.498176 TTTCAGACTATAAGACCTTGTTAAACC 57.502 33.333 0.00 0.00 0.00 3.27
327 328 8.431910 TCAGACTATAAGACCTTGTTAAACCT 57.568 34.615 0.00 0.00 0.00 3.50
328 329 8.529476 TCAGACTATAAGACCTTGTTAAACCTC 58.471 37.037 0.00 0.00 0.00 3.85
329 330 8.532819 CAGACTATAAGACCTTGTTAAACCTCT 58.467 37.037 0.00 0.00 0.00 3.69
330 331 9.102453 AGACTATAAGACCTTGTTAAACCTCTT 57.898 33.333 0.00 0.00 0.00 2.85
331 332 9.722184 GACTATAAGACCTTGTTAAACCTCTTT 57.278 33.333 0.00 0.00 0.00 2.52
362 363 9.720769 ATCTATAAATGTGACTATAAAACCGGG 57.279 33.333 6.32 0.00 0.00 5.73
363 364 8.926374 TCTATAAATGTGACTATAAAACCGGGA 58.074 33.333 6.32 0.00 0.00 5.14
364 365 9.204570 CTATAAATGTGACTATAAAACCGGGAG 57.795 37.037 6.32 0.00 0.00 4.30
365 366 5.431179 AATGTGACTATAAAACCGGGAGT 57.569 39.130 6.32 0.00 0.00 3.85
366 367 4.460948 TGTGACTATAAAACCGGGAGTC 57.539 45.455 6.32 8.96 37.61 3.36
367 368 3.196254 TGTGACTATAAAACCGGGAGTCC 59.804 47.826 6.32 0.00 36.52 3.85
368 369 2.767960 TGACTATAAAACCGGGAGTCCC 59.232 50.000 19.37 19.37 41.09 4.46
509 513 0.325296 AGAGGGTATGGGTGCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
537 542 1.071228 ACTTCGCGGTAGGTTCCTTTT 59.929 47.619 6.13 0.00 0.00 2.27
565 570 2.662866 CCATTGCCATGAGATGAACCT 58.337 47.619 0.00 0.00 31.07 3.50
566 571 2.621998 CCATTGCCATGAGATGAACCTC 59.378 50.000 0.00 0.00 31.07 3.85
567 572 3.552875 CATTGCCATGAGATGAACCTCT 58.447 45.455 0.00 0.00 34.38 3.69
568 573 2.704464 TGCCATGAGATGAACCTCTG 57.296 50.000 0.00 0.00 34.38 3.35
569 574 1.211212 TGCCATGAGATGAACCTCTGG 59.789 52.381 0.00 0.00 35.97 3.86
599 604 1.660607 CTCTGTGTGTGTGTGTGTGTC 59.339 52.381 0.00 0.00 0.00 3.67
600 605 1.001406 TCTGTGTGTGTGTGTGTGTCA 59.999 47.619 0.00 0.00 0.00 3.58
610 639 0.096976 GTGTGTGTCAGTGTGTGTGC 59.903 55.000 0.00 0.00 0.00 4.57
612 641 2.324477 GTGTCAGTGTGTGTGCGC 59.676 61.111 0.00 0.00 0.00 6.09
614 643 4.649954 GTCAGTGTGTGTGCGCGC 62.650 66.667 27.26 27.26 35.99 6.86
655 689 1.080705 GGCTGCTCGACACGTAGTT 60.081 57.895 0.00 0.00 41.61 2.24
738 817 1.485397 CTCTAGCTAGCGTCGTCGTA 58.515 55.000 16.35 0.00 39.49 3.43
870 1868 2.579201 CATCTCCGGCCGTCTTGT 59.421 61.111 26.12 2.62 0.00 3.16
982 2053 1.143277 TCGTGATCTCCTCCTACTCCC 59.857 57.143 0.00 0.00 0.00 4.30
1474 4635 3.240606 CTTGTTCGCCAGCACCGTG 62.241 63.158 0.00 0.00 0.00 4.94
1554 4715 0.884704 TTCTGCTTCTTCGTGGTGGC 60.885 55.000 0.00 0.00 0.00 5.01
1603 4770 2.123726 GGTGATGGGTGGGGCATC 60.124 66.667 0.00 0.00 0.00 3.91
1705 5104 1.662629 CTGCTGTGACGATTGATGGAC 59.337 52.381 0.00 0.00 0.00 4.02
1735 5249 5.212934 CGTATTTGCGAATCTAGTAGCTGA 58.787 41.667 1.35 0.00 0.00 4.26
1778 5294 8.905660 TCCAGATTGACTCTACTAGTATGTAC 57.094 38.462 2.33 0.00 39.07 2.90
1788 5311 6.835174 TCTACTAGTATGTACTCATTCGGGT 58.165 40.000 2.33 0.00 37.73 5.28
1858 5423 4.634184 TGCTGTAGTATTCGACCTTCTC 57.366 45.455 0.00 0.00 0.00 2.87
1873 5438 4.958509 ACCTTCTCTCTATGCATGTGATG 58.041 43.478 10.16 2.01 0.00 3.07
1925 5492 6.852420 ATAGGTCCAGCTTCGCTATAATTA 57.148 37.500 0.00 0.00 36.40 1.40
1935 5502 9.411801 CAGCTTCGCTATAATTAGATGTTTCTA 57.588 33.333 0.00 0.00 36.40 2.10
2079 5669 1.153628 GATTGAGTGACCCCCGTCG 60.154 63.158 0.00 0.00 42.37 5.12
2157 5747 3.036429 GCCCTCCTGCCGATTGAGT 62.036 63.158 0.00 0.00 0.00 3.41
2229 7311 1.527380 GTGGGAGCGGTTTCACCAA 60.527 57.895 9.24 0.00 38.47 3.67
2296 7395 2.911484 AGAACGCAATGATCCTCCTTC 58.089 47.619 0.00 0.00 0.00 3.46
2298 7397 3.118112 AGAACGCAATGATCCTCCTTCAT 60.118 43.478 0.00 0.00 35.35 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.441017 TGTTAAAAGCCAAATATTTCTGCAGT 58.559 30.769 14.67 0.00 0.00 4.40
1 2 7.814107 TCTGTTAAAAGCCAAATATTTCTGCAG 59.186 33.333 7.63 7.63 0.00 4.41
2 3 7.665690 TCTGTTAAAAGCCAAATATTTCTGCA 58.334 30.769 17.20 0.00 0.00 4.41
3 4 8.435430 GTTCTGTTAAAAGCCAAATATTTCTGC 58.565 33.333 10.04 10.04 0.00 4.26
4 5 9.474920 TGTTCTGTTAAAAGCCAAATATTTCTG 57.525 29.630 0.00 0.00 0.00 3.02
7 8 9.606631 TGTTGTTCTGTTAAAAGCCAAATATTT 57.393 25.926 0.00 0.00 0.00 1.40
8 9 9.606631 TTGTTGTTCTGTTAAAAGCCAAATATT 57.393 25.926 0.70 0.00 0.00 1.28
9 10 9.040939 GTTGTTGTTCTGTTAAAAGCCAAATAT 57.959 29.630 0.70 0.00 0.00 1.28
10 11 8.254508 AGTTGTTGTTCTGTTAAAAGCCAAATA 58.745 29.630 0.70 0.00 0.00 1.40
11 12 7.102993 AGTTGTTGTTCTGTTAAAAGCCAAAT 58.897 30.769 0.70 0.00 0.00 2.32
12 13 6.459923 AGTTGTTGTTCTGTTAAAAGCCAAA 58.540 32.000 0.70 0.00 0.00 3.28
13 14 6.031751 AGTTGTTGTTCTGTTAAAAGCCAA 57.968 33.333 0.00 0.00 0.00 4.52
14 15 5.652994 AGTTGTTGTTCTGTTAAAAGCCA 57.347 34.783 0.00 0.00 0.00 4.75
15 16 7.918562 TGAATAGTTGTTGTTCTGTTAAAAGCC 59.081 33.333 0.00 0.00 0.00 4.35
16 17 8.850454 TGAATAGTTGTTGTTCTGTTAAAAGC 57.150 30.769 0.00 0.00 0.00 3.51
43 44 4.038642 AGCTCGGAATAAAACCTGCAAAAA 59.961 37.500 0.00 0.00 0.00 1.94
44 45 3.572255 AGCTCGGAATAAAACCTGCAAAA 59.428 39.130 0.00 0.00 0.00 2.44
45 46 3.153919 AGCTCGGAATAAAACCTGCAAA 58.846 40.909 0.00 0.00 0.00 3.68
46 47 2.790433 AGCTCGGAATAAAACCTGCAA 58.210 42.857 0.00 0.00 0.00 4.08
47 48 2.489938 AGCTCGGAATAAAACCTGCA 57.510 45.000 0.00 0.00 0.00 4.41
48 49 3.309954 CAGTAGCTCGGAATAAAACCTGC 59.690 47.826 0.00 0.00 0.00 4.85
49 50 3.309954 GCAGTAGCTCGGAATAAAACCTG 59.690 47.826 0.00 0.00 37.91 4.00
50 51 3.532542 GCAGTAGCTCGGAATAAAACCT 58.467 45.455 0.00 0.00 37.91 3.50
51 52 2.284417 CGCAGTAGCTCGGAATAAAACC 59.716 50.000 0.00 0.00 39.10 3.27
52 53 2.285660 GCGCAGTAGCTCGGAATAAAAC 60.286 50.000 0.30 0.00 39.10 2.43
53 54 1.931172 GCGCAGTAGCTCGGAATAAAA 59.069 47.619 0.30 0.00 39.10 1.52
54 55 1.136305 AGCGCAGTAGCTCGGAATAAA 59.864 47.619 11.47 0.00 45.67 1.40
55 56 0.744874 AGCGCAGTAGCTCGGAATAA 59.255 50.000 11.47 0.00 45.67 1.40
56 57 2.415825 AGCGCAGTAGCTCGGAATA 58.584 52.632 11.47 0.00 45.67 1.75
57 58 3.211288 AGCGCAGTAGCTCGGAAT 58.789 55.556 11.47 0.00 45.67 3.01
64 65 0.039074 ATACGGATCAGCGCAGTAGC 60.039 55.000 11.47 0.00 37.42 3.58
65 66 1.001268 ACATACGGATCAGCGCAGTAG 60.001 52.381 11.47 0.00 0.00 2.57
66 67 1.029681 ACATACGGATCAGCGCAGTA 58.970 50.000 11.47 4.28 0.00 2.74
67 68 0.528466 CACATACGGATCAGCGCAGT 60.528 55.000 11.47 1.89 0.00 4.40
68 69 1.217585 CCACATACGGATCAGCGCAG 61.218 60.000 11.47 0.00 0.00 5.18
69 70 1.227234 CCACATACGGATCAGCGCA 60.227 57.895 11.47 0.00 0.00 6.09
70 71 1.215655 GACCACATACGGATCAGCGC 61.216 60.000 0.00 0.00 0.00 5.92
71 72 0.934901 CGACCACATACGGATCAGCG 60.935 60.000 0.00 0.00 0.00 5.18
72 73 0.102481 ACGACCACATACGGATCAGC 59.898 55.000 0.00 0.00 0.00 4.26
73 74 2.579207 AACGACCACATACGGATCAG 57.421 50.000 0.00 0.00 0.00 2.90
74 75 3.018856 AGTAACGACCACATACGGATCA 58.981 45.455 0.00 0.00 0.00 2.92
75 76 3.065786 TGAGTAACGACCACATACGGATC 59.934 47.826 0.00 0.00 0.00 3.36
76 77 3.018856 TGAGTAACGACCACATACGGAT 58.981 45.455 0.00 0.00 0.00 4.18
77 78 2.162208 GTGAGTAACGACCACATACGGA 59.838 50.000 0.00 0.00 31.06 4.69
78 79 2.163010 AGTGAGTAACGACCACATACGG 59.837 50.000 0.00 0.00 32.33 4.02
79 80 3.120095 TGAGTGAGTAACGACCACATACG 60.120 47.826 0.00 0.00 32.33 3.06
80 81 4.430137 TGAGTGAGTAACGACCACATAC 57.570 45.455 0.00 0.00 32.33 2.39
81 82 5.224888 GTTTGAGTGAGTAACGACCACATA 58.775 41.667 0.00 0.00 32.33 2.29
82 83 4.056050 GTTTGAGTGAGTAACGACCACAT 58.944 43.478 0.00 0.00 32.33 3.21
83 84 3.450578 GTTTGAGTGAGTAACGACCACA 58.549 45.455 0.00 0.00 32.33 4.17
84 85 2.470257 CGTTTGAGTGAGTAACGACCAC 59.530 50.000 0.00 0.00 45.36 4.16
85 86 2.544277 CCGTTTGAGTGAGTAACGACCA 60.544 50.000 8.03 0.00 45.36 4.02
86 87 2.056577 CCGTTTGAGTGAGTAACGACC 58.943 52.381 8.03 0.00 45.36 4.79
87 88 2.978489 CTCCGTTTGAGTGAGTAACGAC 59.022 50.000 8.03 0.00 45.36 4.34
88 89 2.030540 CCTCCGTTTGAGTGAGTAACGA 60.031 50.000 8.03 0.00 45.36 3.85
89 90 2.325761 CCTCCGTTTGAGTGAGTAACG 58.674 52.381 0.00 0.00 42.98 3.18
90 91 2.067013 GCCTCCGTTTGAGTGAGTAAC 58.933 52.381 0.00 0.00 39.65 2.50
91 92 1.001633 GGCCTCCGTTTGAGTGAGTAA 59.998 52.381 0.00 0.00 39.65 2.24
92 93 0.606604 GGCCTCCGTTTGAGTGAGTA 59.393 55.000 0.00 0.00 39.65 2.59
93 94 1.371558 GGCCTCCGTTTGAGTGAGT 59.628 57.895 0.00 0.00 39.65 3.41
94 95 0.671781 CTGGCCTCCGTTTGAGTGAG 60.672 60.000 3.32 0.00 39.65 3.51
95 96 1.371183 CTGGCCTCCGTTTGAGTGA 59.629 57.895 3.32 0.00 39.65 3.41
96 97 1.672356 CCTGGCCTCCGTTTGAGTG 60.672 63.158 3.32 0.00 39.65 3.51
97 98 2.750350 CCTGGCCTCCGTTTGAGT 59.250 61.111 3.32 0.00 39.65 3.41
98 99 2.045926 CCCTGGCCTCCGTTTGAG 60.046 66.667 3.32 0.00 41.07 3.02
99 100 2.528127 TCCCTGGCCTCCGTTTGA 60.528 61.111 3.32 0.00 0.00 2.69
100 101 2.045926 CTCCCTGGCCTCCGTTTG 60.046 66.667 3.32 0.00 0.00 2.93
101 102 4.035102 GCTCCCTGGCCTCCGTTT 62.035 66.667 3.32 0.00 0.00 3.60
105 106 4.035102 AAACGCTCCCTGGCCTCC 62.035 66.667 3.32 0.00 0.00 4.30
106 107 2.747855 CAAACGCTCCCTGGCCTC 60.748 66.667 3.32 0.00 0.00 4.70
107 108 4.351054 CCAAACGCTCCCTGGCCT 62.351 66.667 3.32 0.00 0.00 5.19
108 109 2.757980 TAACCAAACGCTCCCTGGCC 62.758 60.000 0.00 0.00 33.19 5.36
109 110 1.302993 TAACCAAACGCTCCCTGGC 60.303 57.895 0.00 0.00 33.19 4.85
110 111 0.036306 AGTAACCAAACGCTCCCTGG 59.964 55.000 0.00 0.00 36.24 4.45
111 112 1.156736 CAGTAACCAAACGCTCCCTG 58.843 55.000 0.00 0.00 0.00 4.45
112 113 0.036306 CCAGTAACCAAACGCTCCCT 59.964 55.000 0.00 0.00 0.00 4.20
113 114 0.035739 TCCAGTAACCAAACGCTCCC 59.964 55.000 0.00 0.00 0.00 4.30
114 115 2.007608 GATCCAGTAACCAAACGCTCC 58.992 52.381 0.00 0.00 0.00 4.70
115 116 2.673368 CAGATCCAGTAACCAAACGCTC 59.327 50.000 0.00 0.00 0.00 5.03
116 117 2.038557 ACAGATCCAGTAACCAAACGCT 59.961 45.455 0.00 0.00 0.00 5.07
117 118 2.415512 GACAGATCCAGTAACCAAACGC 59.584 50.000 0.00 0.00 0.00 4.84
118 119 3.000727 GGACAGATCCAGTAACCAAACG 58.999 50.000 0.00 0.00 45.47 3.60
119 120 3.000727 CGGACAGATCCAGTAACCAAAC 58.999 50.000 0.00 0.00 46.67 2.93
120 121 2.027561 CCGGACAGATCCAGTAACCAAA 60.028 50.000 0.00 0.00 46.67 3.28
121 122 1.553248 CCGGACAGATCCAGTAACCAA 59.447 52.381 0.00 0.00 46.67 3.67
122 123 1.191535 CCGGACAGATCCAGTAACCA 58.808 55.000 0.00 0.00 46.67 3.67
123 124 1.134788 CACCGGACAGATCCAGTAACC 60.135 57.143 9.46 0.00 46.67 2.85
124 125 1.134788 CCACCGGACAGATCCAGTAAC 60.135 57.143 9.46 0.00 46.67 2.50
125 126 1.191535 CCACCGGACAGATCCAGTAA 58.808 55.000 9.46 0.00 46.67 2.24
126 127 0.686441 CCCACCGGACAGATCCAGTA 60.686 60.000 9.46 0.00 46.67 2.74
127 128 1.990060 CCCACCGGACAGATCCAGT 60.990 63.158 9.46 0.00 46.67 4.00
128 129 1.680522 CTCCCACCGGACAGATCCAG 61.681 65.000 9.46 0.00 46.67 3.86
129 130 1.685765 CTCCCACCGGACAGATCCA 60.686 63.158 9.46 0.00 46.67 3.41
130 131 0.760945 ATCTCCCACCGGACAGATCC 60.761 60.000 9.46 0.00 42.28 3.36
131 132 0.390860 CATCTCCCACCGGACAGATC 59.609 60.000 9.46 0.00 33.32 2.75
132 133 1.050988 CCATCTCCCACCGGACAGAT 61.051 60.000 9.46 5.91 33.32 2.90
133 134 1.685765 CCATCTCCCACCGGACAGA 60.686 63.158 9.46 3.41 33.32 3.41
134 135 0.686441 TACCATCTCCCACCGGACAG 60.686 60.000 9.46 0.00 33.32 3.51
135 136 0.686441 CTACCATCTCCCACCGGACA 60.686 60.000 9.46 0.00 33.32 4.02
136 137 2.029307 GCTACCATCTCCCACCGGAC 62.029 65.000 9.46 0.00 33.32 4.79
137 138 1.760875 GCTACCATCTCCCACCGGA 60.761 63.158 9.46 0.00 36.45 5.14
138 139 2.063979 TGCTACCATCTCCCACCGG 61.064 63.158 0.00 0.00 0.00 5.28
139 140 1.144057 GTGCTACCATCTCCCACCG 59.856 63.158 0.00 0.00 0.00 4.94
140 141 1.144057 CGTGCTACCATCTCCCACC 59.856 63.158 0.00 0.00 0.00 4.61
141 142 1.144057 CCGTGCTACCATCTCCCAC 59.856 63.158 0.00 0.00 0.00 4.61
142 143 2.063979 CCCGTGCTACCATCTCCCA 61.064 63.158 0.00 0.00 0.00 4.37
143 144 1.122019 ATCCCGTGCTACCATCTCCC 61.122 60.000 0.00 0.00 0.00 4.30
144 145 1.629043 TATCCCGTGCTACCATCTCC 58.371 55.000 0.00 0.00 0.00 3.71
145 146 3.093057 AGATATCCCGTGCTACCATCTC 58.907 50.000 0.00 0.00 0.00 2.75
146 147 3.176924 AGATATCCCGTGCTACCATCT 57.823 47.619 0.00 0.00 0.00 2.90
147 148 3.258372 TGAAGATATCCCGTGCTACCATC 59.742 47.826 0.00 0.00 0.00 3.51
148 149 3.239449 TGAAGATATCCCGTGCTACCAT 58.761 45.455 0.00 0.00 0.00 3.55
149 150 2.673258 TGAAGATATCCCGTGCTACCA 58.327 47.619 0.00 0.00 0.00 3.25
150 151 3.391049 GTTGAAGATATCCCGTGCTACC 58.609 50.000 0.00 0.00 0.00 3.18
151 152 3.391049 GGTTGAAGATATCCCGTGCTAC 58.609 50.000 0.00 0.00 0.00 3.58
152 153 2.035449 CGGTTGAAGATATCCCGTGCTA 59.965 50.000 8.66 0.00 34.10 3.49
153 154 1.202533 CGGTTGAAGATATCCCGTGCT 60.203 52.381 8.66 0.00 34.10 4.40
154 155 1.217882 CGGTTGAAGATATCCCGTGC 58.782 55.000 8.66 0.00 34.10 5.34
155 156 1.865865 CCGGTTGAAGATATCCCGTG 58.134 55.000 13.92 4.76 36.98 4.94
156 157 0.106149 GCCGGTTGAAGATATCCCGT 59.894 55.000 13.92 0.00 36.98 5.28
157 158 0.393077 AGCCGGTTGAAGATATCCCG 59.607 55.000 1.90 9.61 38.39 5.14
158 159 2.222027 CAAGCCGGTTGAAGATATCCC 58.778 52.381 1.90 0.00 38.60 3.85
159 160 2.158813 TCCAAGCCGGTTGAAGATATCC 60.159 50.000 11.93 0.00 38.60 2.59
160 161 3.194005 TCCAAGCCGGTTGAAGATATC 57.806 47.619 11.93 0.00 38.60 1.63
161 162 3.136443 TCATCCAAGCCGGTTGAAGATAT 59.864 43.478 11.93 0.00 39.98 1.63
162 163 2.503765 TCATCCAAGCCGGTTGAAGATA 59.496 45.455 11.93 0.00 39.98 1.98
163 164 1.281867 TCATCCAAGCCGGTTGAAGAT 59.718 47.619 11.93 4.35 39.98 2.40
164 165 0.690192 TCATCCAAGCCGGTTGAAGA 59.310 50.000 11.93 2.11 39.98 2.87
165 166 0.804989 GTCATCCAAGCCGGTTGAAG 59.195 55.000 11.93 1.74 43.62 3.02
166 167 0.953471 CGTCATCCAAGCCGGTTGAA 60.953 55.000 11.93 0.00 43.62 2.69
167 168 1.375396 CGTCATCCAAGCCGGTTGA 60.375 57.895 11.93 0.00 40.54 3.18
168 169 2.398554 CCGTCATCCAAGCCGGTTG 61.399 63.158 1.90 6.55 35.78 3.77
169 170 2.046314 CCGTCATCCAAGCCGGTT 60.046 61.111 1.90 0.00 35.78 4.44
171 172 2.511600 GACCGTCATCCAAGCCGG 60.512 66.667 0.00 0.00 45.72 6.13
172 173 1.153369 ATGACCGTCATCCAAGCCG 60.153 57.895 8.28 0.00 29.59 5.52
173 174 0.392998 ACATGACCGTCATCCAAGCC 60.393 55.000 11.24 0.00 34.28 4.35
174 175 2.309528 TACATGACCGTCATCCAAGC 57.690 50.000 11.24 0.00 34.28 4.01
175 176 6.223120 TCATATTACATGACCGTCATCCAAG 58.777 40.000 11.24 3.28 34.28 3.61
176 177 6.168270 TCATATTACATGACCGTCATCCAA 57.832 37.500 11.24 8.58 34.28 3.53
177 178 5.799827 TCATATTACATGACCGTCATCCA 57.200 39.130 11.24 0.00 34.28 3.41
178 179 6.980978 CCTATCATATTACATGACCGTCATCC 59.019 42.308 11.24 0.00 34.28 3.51
179 180 6.477033 GCCTATCATATTACATGACCGTCATC 59.523 42.308 11.24 0.00 34.28 2.92
180 181 6.341316 GCCTATCATATTACATGACCGTCAT 58.659 40.000 8.28 8.28 37.65 3.06
181 182 5.621329 CGCCTATCATATTACATGACCGTCA 60.621 44.000 3.10 3.10 0.00 4.35
182 183 4.798907 CGCCTATCATATTACATGACCGTC 59.201 45.833 0.00 0.00 0.00 4.79
183 184 4.461431 TCGCCTATCATATTACATGACCGT 59.539 41.667 0.00 0.00 0.00 4.83
184 185 4.993905 TCGCCTATCATATTACATGACCG 58.006 43.478 0.00 0.00 0.00 4.79
185 186 8.198109 ACTAATCGCCTATCATATTACATGACC 58.802 37.037 0.00 0.00 0.00 4.02
186 187 9.587772 AACTAATCGCCTATCATATTACATGAC 57.412 33.333 0.00 0.00 0.00 3.06
190 191 9.865321 GGTAAACTAATCGCCTATCATATTACA 57.135 33.333 0.00 0.00 0.00 2.41
199 200 8.648693 ACAAAGATAGGTAAACTAATCGCCTAT 58.351 33.333 0.00 0.00 43.06 2.57
200 201 8.015185 ACAAAGATAGGTAAACTAATCGCCTA 57.985 34.615 0.00 0.00 34.79 3.93
201 202 6.885922 ACAAAGATAGGTAAACTAATCGCCT 58.114 36.000 0.00 0.00 34.79 5.52
202 203 7.549615 AACAAAGATAGGTAAACTAATCGCC 57.450 36.000 0.00 0.00 34.79 5.54
206 207 9.914834 TGGCATAACAAAGATAGGTAAACTAAT 57.085 29.630 0.00 0.00 34.79 1.73
207 208 9.391006 CTGGCATAACAAAGATAGGTAAACTAA 57.609 33.333 0.00 0.00 34.79 2.24
208 209 7.497909 GCTGGCATAACAAAGATAGGTAAACTA 59.502 37.037 0.00 0.00 35.80 2.24
209 210 6.318900 GCTGGCATAACAAAGATAGGTAAACT 59.681 38.462 0.00 0.00 0.00 2.66
210 211 6.459710 GGCTGGCATAACAAAGATAGGTAAAC 60.460 42.308 0.00 0.00 0.00 2.01
211 212 5.592688 GGCTGGCATAACAAAGATAGGTAAA 59.407 40.000 0.00 0.00 0.00 2.01
212 213 5.130350 GGCTGGCATAACAAAGATAGGTAA 58.870 41.667 0.00 0.00 0.00 2.85
213 214 4.714632 GGCTGGCATAACAAAGATAGGTA 58.285 43.478 0.00 0.00 0.00 3.08
214 215 3.555966 GGCTGGCATAACAAAGATAGGT 58.444 45.455 0.00 0.00 0.00 3.08
215 216 2.549754 CGGCTGGCATAACAAAGATAGG 59.450 50.000 1.08 0.00 0.00 2.57
216 217 2.549754 CCGGCTGGCATAACAAAGATAG 59.450 50.000 0.00 0.00 0.00 2.08
217 218 2.092646 ACCGGCTGGCATAACAAAGATA 60.093 45.455 12.89 0.00 39.70 1.98
218 219 1.340991 ACCGGCTGGCATAACAAAGAT 60.341 47.619 12.89 0.00 39.70 2.40
219 220 0.037590 ACCGGCTGGCATAACAAAGA 59.962 50.000 12.89 0.00 39.70 2.52
220 221 0.887933 AACCGGCTGGCATAACAAAG 59.112 50.000 12.89 0.00 39.70 2.77
221 222 0.600557 CAACCGGCTGGCATAACAAA 59.399 50.000 12.89 0.00 39.70 2.83
222 223 0.538516 ACAACCGGCTGGCATAACAA 60.539 50.000 12.89 0.00 39.70 2.83
223 224 1.074072 ACAACCGGCTGGCATAACA 59.926 52.632 12.89 0.00 39.70 2.41
224 225 1.506262 CACAACCGGCTGGCATAAC 59.494 57.895 12.89 0.00 39.70 1.89
225 226 1.677300 CCACAACCGGCTGGCATAA 60.677 57.895 12.89 0.00 39.70 1.90
226 227 2.045438 CCACAACCGGCTGGCATA 60.045 61.111 12.89 0.00 39.70 3.14
227 228 3.808218 AACCACAACCGGCTGGCAT 62.808 57.895 12.89 0.00 39.70 4.40
228 229 4.514585 AACCACAACCGGCTGGCA 62.515 61.111 12.89 0.00 39.70 4.92
229 230 2.791868 AAAACCACAACCGGCTGGC 61.792 57.895 12.89 0.00 39.70 4.85
230 231 1.067250 CAAAACCACAACCGGCTGG 59.933 57.895 11.02 11.02 42.84 4.85
231 232 1.067250 CCAAAACCACAACCGGCTG 59.933 57.895 0.00 0.62 0.00 4.85
232 233 2.131067 CCCAAAACCACAACCGGCT 61.131 57.895 0.00 0.00 0.00 5.52
233 234 2.358193 GACCCAAAACCACAACCGGC 62.358 60.000 0.00 0.00 0.00 6.13
234 235 0.753848 AGACCCAAAACCACAACCGG 60.754 55.000 0.00 0.00 0.00 5.28
235 236 1.107945 AAGACCCAAAACCACAACCG 58.892 50.000 0.00 0.00 0.00 4.44
236 237 3.266636 CAAAAGACCCAAAACCACAACC 58.733 45.455 0.00 0.00 0.00 3.77
237 238 3.930229 GACAAAAGACCCAAAACCACAAC 59.070 43.478 0.00 0.00 0.00 3.32
238 239 3.835395 AGACAAAAGACCCAAAACCACAA 59.165 39.130 0.00 0.00 0.00 3.33
239 240 3.436243 AGACAAAAGACCCAAAACCACA 58.564 40.909 0.00 0.00 0.00 4.17
240 241 4.430007 GAAGACAAAAGACCCAAAACCAC 58.570 43.478 0.00 0.00 0.00 4.16
241 242 3.449377 GGAAGACAAAAGACCCAAAACCA 59.551 43.478 0.00 0.00 0.00 3.67
242 243 3.490249 CGGAAGACAAAAGACCCAAAACC 60.490 47.826 0.00 0.00 0.00 3.27
243 244 3.702330 CGGAAGACAAAAGACCCAAAAC 58.298 45.455 0.00 0.00 0.00 2.43
244 245 2.100087 GCGGAAGACAAAAGACCCAAAA 59.900 45.455 0.00 0.00 0.00 2.44
245 246 1.679153 GCGGAAGACAAAAGACCCAAA 59.321 47.619 0.00 0.00 0.00 3.28
246 247 1.314730 GCGGAAGACAAAAGACCCAA 58.685 50.000 0.00 0.00 0.00 4.12
247 248 0.882927 CGCGGAAGACAAAAGACCCA 60.883 55.000 0.00 0.00 0.00 4.51
248 249 0.883370 ACGCGGAAGACAAAAGACCC 60.883 55.000 12.47 0.00 0.00 4.46
249 250 0.942252 AACGCGGAAGACAAAAGACC 59.058 50.000 12.47 0.00 0.00 3.85
250 251 1.329599 ACAACGCGGAAGACAAAAGAC 59.670 47.619 12.47 0.00 0.00 3.01
251 252 1.329292 CACAACGCGGAAGACAAAAGA 59.671 47.619 12.47 0.00 0.00 2.52
252 253 1.596954 CCACAACGCGGAAGACAAAAG 60.597 52.381 12.47 0.00 0.00 2.27
253 254 0.378962 CCACAACGCGGAAGACAAAA 59.621 50.000 12.47 0.00 0.00 2.44
254 255 2.018544 CCACAACGCGGAAGACAAA 58.981 52.632 12.47 0.00 0.00 2.83
255 256 2.539338 GCCACAACGCGGAAGACAA 61.539 57.895 12.47 0.00 0.00 3.18
256 257 2.970324 GCCACAACGCGGAAGACA 60.970 61.111 12.47 0.00 0.00 3.41
257 258 2.665185 AGCCACAACGCGGAAGAC 60.665 61.111 12.47 0.00 0.00 3.01
258 259 2.357034 GAGCCACAACGCGGAAGA 60.357 61.111 12.47 0.00 0.00 2.87
259 260 1.507141 AAAGAGCCACAACGCGGAAG 61.507 55.000 12.47 1.42 0.00 3.46
260 261 1.525077 AAAGAGCCACAACGCGGAA 60.525 52.632 12.47 0.00 0.00 4.30
261 262 2.110213 AAAGAGCCACAACGCGGA 59.890 55.556 12.47 0.00 0.00 5.54
262 263 2.252260 CAAAGAGCCACAACGCGG 59.748 61.111 12.47 0.00 0.00 6.46
263 264 1.369209 CACAAAGAGCCACAACGCG 60.369 57.895 3.53 3.53 0.00 6.01
264 265 0.040958 CTCACAAAGAGCCACAACGC 60.041 55.000 0.00 0.00 37.59 4.84
274 275 2.248280 TAACGGCAAGCTCACAAAGA 57.752 45.000 0.00 0.00 0.00 2.52
275 276 3.559238 AATAACGGCAAGCTCACAAAG 57.441 42.857 0.00 0.00 0.00 2.77
276 277 4.047822 CAAAATAACGGCAAGCTCACAAA 58.952 39.130 0.00 0.00 0.00 2.83
277 278 3.067461 ACAAAATAACGGCAAGCTCACAA 59.933 39.130 0.00 0.00 0.00 3.33
278 279 2.621055 ACAAAATAACGGCAAGCTCACA 59.379 40.909 0.00 0.00 0.00 3.58
279 280 3.282831 ACAAAATAACGGCAAGCTCAC 57.717 42.857 0.00 0.00 0.00 3.51
280 281 4.314740 AAACAAAATAACGGCAAGCTCA 57.685 36.364 0.00 0.00 0.00 4.26
281 282 4.742659 TGAAAACAAAATAACGGCAAGCTC 59.257 37.500 0.00 0.00 0.00 4.09
282 283 4.688021 TGAAAACAAAATAACGGCAAGCT 58.312 34.783 0.00 0.00 0.00 3.74
283 284 4.742659 TCTGAAAACAAAATAACGGCAAGC 59.257 37.500 0.00 0.00 0.00 4.01
284 285 5.977129 AGTCTGAAAACAAAATAACGGCAAG 59.023 36.000 0.00 0.00 0.00 4.01
285 286 5.897050 AGTCTGAAAACAAAATAACGGCAA 58.103 33.333 0.00 0.00 0.00 4.52
286 287 5.508200 AGTCTGAAAACAAAATAACGGCA 57.492 34.783 0.00 0.00 0.00 5.69
287 288 9.274065 CTTATAGTCTGAAAACAAAATAACGGC 57.726 33.333 0.00 0.00 0.00 5.68
294 295 9.403583 ACAAGGTCTTATAGTCTGAAAACAAAA 57.596 29.630 0.00 0.00 0.00 2.44
295 296 8.974060 ACAAGGTCTTATAGTCTGAAAACAAA 57.026 30.769 0.00 0.00 0.00 2.83
296 297 8.974060 AACAAGGTCTTATAGTCTGAAAACAA 57.026 30.769 0.00 0.00 0.00 2.83
300 301 9.498176 GGTTTAACAAGGTCTTATAGTCTGAAA 57.502 33.333 0.00 0.00 0.00 2.69
301 302 8.877195 AGGTTTAACAAGGTCTTATAGTCTGAA 58.123 33.333 0.00 0.00 0.00 3.02
302 303 8.431910 AGGTTTAACAAGGTCTTATAGTCTGA 57.568 34.615 0.00 0.00 0.00 3.27
303 304 8.532819 AGAGGTTTAACAAGGTCTTATAGTCTG 58.467 37.037 0.00 0.00 0.00 3.51
304 305 8.667592 AGAGGTTTAACAAGGTCTTATAGTCT 57.332 34.615 0.00 0.00 0.00 3.24
305 306 9.722184 AAAGAGGTTTAACAAGGTCTTATAGTC 57.278 33.333 0.00 0.00 0.00 2.59
336 337 9.720769 CCCGGTTTTATAGTCACATTTATAGAT 57.279 33.333 0.00 0.00 0.00 1.98
337 338 8.926374 TCCCGGTTTTATAGTCACATTTATAGA 58.074 33.333 0.00 0.00 0.00 1.98
338 339 9.204570 CTCCCGGTTTTATAGTCACATTTATAG 57.795 37.037 0.00 0.00 0.00 1.31
339 340 8.707449 ACTCCCGGTTTTATAGTCACATTTATA 58.293 33.333 0.00 0.00 0.00 0.98
340 341 7.571025 ACTCCCGGTTTTATAGTCACATTTAT 58.429 34.615 0.00 0.00 0.00 1.40
341 342 6.949715 ACTCCCGGTTTTATAGTCACATTTA 58.050 36.000 0.00 0.00 0.00 1.40
342 343 5.812286 ACTCCCGGTTTTATAGTCACATTT 58.188 37.500 0.00 0.00 0.00 2.32
343 344 5.425630 GACTCCCGGTTTTATAGTCACATT 58.574 41.667 0.00 0.00 37.20 2.71
344 345 4.141779 GGACTCCCGGTTTTATAGTCACAT 60.142 45.833 0.00 0.00 38.63 3.21
345 346 3.196254 GGACTCCCGGTTTTATAGTCACA 59.804 47.826 0.00 0.00 38.63 3.58
346 347 3.431346 GGGACTCCCGGTTTTATAGTCAC 60.431 52.174 0.00 0.81 38.63 3.67
347 348 2.767960 GGGACTCCCGGTTTTATAGTCA 59.232 50.000 0.00 0.00 38.63 3.41
348 349 2.103771 GGGGACTCCCGGTTTTATAGTC 59.896 54.545 8.12 3.42 46.66 2.59
349 350 2.121948 GGGGACTCCCGGTTTTATAGT 58.878 52.381 8.12 0.00 46.66 2.12
350 351 2.924757 GGGGACTCCCGGTTTTATAG 57.075 55.000 8.12 0.00 46.66 1.31
377 378 5.241728 CAGTGAAAACCTAGCTAGCCTTTTT 59.758 40.000 15.74 17.50 0.00 1.94
378 379 4.762251 CAGTGAAAACCTAGCTAGCCTTTT 59.238 41.667 15.74 18.19 0.00 2.27
379 380 4.327680 CAGTGAAAACCTAGCTAGCCTTT 58.672 43.478 15.74 15.12 0.00 3.11
380 381 3.870299 GCAGTGAAAACCTAGCTAGCCTT 60.870 47.826 15.74 7.42 0.00 4.35
537 542 3.429492 TCTCATGGCAATGGCAGTAAAA 58.571 40.909 16.10 0.00 42.43 1.52
539 544 2.804986 TCTCATGGCAATGGCAGTAA 57.195 45.000 16.10 2.17 42.43 2.24
540 545 2.173143 TCATCTCATGGCAATGGCAGTA 59.827 45.455 16.10 4.71 42.43 2.74
565 570 1.305633 CAGAGGGAGGAGTGCCAGA 60.306 63.158 0.00 0.00 36.35 3.86
566 571 1.611851 ACAGAGGGAGGAGTGCCAG 60.612 63.158 0.00 0.00 36.35 4.85
567 572 1.915266 CACAGAGGGAGGAGTGCCA 60.915 63.158 0.00 0.00 36.35 4.92
568 573 1.915769 ACACAGAGGGAGGAGTGCC 60.916 63.158 0.00 0.00 35.47 5.01
569 574 1.294780 CACACAGAGGGAGGAGTGC 59.705 63.158 0.00 0.00 35.47 4.40
738 817 2.162608 CGAGCTACAACTACAGAGTGCT 59.837 50.000 0.00 0.00 35.52 4.40
870 1868 9.853177 AGAAGAGGAAGAAGAAAAGAACATTAA 57.147 29.630 0.00 0.00 0.00 1.40
1554 4715 2.896443 GGAAGCTGAGGAGGTCGG 59.104 66.667 0.00 0.00 34.18 4.79
1603 4770 6.561614 TCAGAAGAAATAGGCTACGTACTTG 58.438 40.000 0.00 0.00 0.00 3.16
1705 5104 3.123804 AGATTCGCAAATACGGCACTAG 58.876 45.455 0.00 0.00 0.00 2.57
1760 5274 7.656542 CCGAATGAGTACATACTAGTAGAGTCA 59.343 40.741 16.31 16.31 39.81 3.41
1775 5291 4.495844 GCAAAGCATTACCCGAATGAGTAC 60.496 45.833 1.51 0.00 46.94 2.73
1777 5293 2.423538 GCAAAGCATTACCCGAATGAGT 59.576 45.455 1.51 0.00 46.94 3.41
1778 5294 2.684881 AGCAAAGCATTACCCGAATGAG 59.315 45.455 1.51 0.00 46.94 2.90
1784 5307 1.139520 GCCAGCAAAGCATTACCCG 59.860 57.895 0.00 0.00 0.00 5.28
1788 5311 9.958180 TCTAATTATATAGCCAGCAAAGCATTA 57.042 29.630 0.00 0.00 0.00 1.90
1858 5423 4.056740 GTCTGACCATCACATGCATAGAG 58.943 47.826 0.00 0.00 0.00 2.43
1925 5492 5.166398 GCAGCAGCAATTTTAGAAACATCT 58.834 37.500 0.00 0.00 41.58 2.90
2079 5669 1.308069 ATGGTCACAAGCATGGTCGC 61.308 55.000 0.00 0.00 41.92 5.19
2256 7338 9.562583 GCGTTCTTTATTTTTGTATTACATCCA 57.437 29.630 0.00 0.00 0.00 3.41
2538 7651 0.109964 TGCGGCTAATTGAACGTTGC 60.110 50.000 5.00 0.62 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.