Multiple sequence alignment - TraesCS3D01G300300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G300300 chr3D 100.000 6822 0 0 1 6822 415161296 415154475 0.000000e+00 12598.0
1 TraesCS3D01G300300 chr3D 85.246 61 8 1 643 702 505793907 505793967 2.050000e-05 62.1
2 TraesCS3D01G300300 chr3A 93.341 3574 156 36 3020 6562 535197020 535200542 0.000000e+00 5206.0
3 TraesCS3D01G300300 chr3A 89.886 2106 112 40 860 2930 535194877 535196916 0.000000e+00 2615.0
4 TraesCS3D01G300300 chr3A 91.115 619 40 7 1 615 535194148 535194755 0.000000e+00 824.0
5 TraesCS3D01G300300 chr3B 91.046 2993 188 45 3020 5963 541083491 541080530 0.000000e+00 3969.0
6 TraesCS3D01G300300 chr3B 90.194 1805 109 33 1135 2930 541085336 541083591 0.000000e+00 2290.0
7 TraesCS3D01G300300 chr3B 96.909 744 22 1 6079 6822 541080515 541079773 0.000000e+00 1245.0
8 TraesCS3D01G300300 chr3B 91.148 610 40 7 1 607 541203671 541203073 0.000000e+00 815.0
9 TraesCS3D01G300300 chr5D 98.958 96 1 0 2919 3014 275419631 275419726 9.100000e-39 172.0
10 TraesCS3D01G300300 chr5D 96.939 98 2 1 2918 3014 86401048 86400951 5.470000e-36 163.0
11 TraesCS3D01G300300 chr5D 90.566 53 4 1 628 679 547716631 547716683 1.230000e-07 69.4
12 TraesCS3D01G300300 chr6A 97.895 95 2 0 2929 3023 224620586 224620492 1.520000e-36 165.0
13 TraesCS3D01G300300 chr6A 79.845 129 19 6 5960 6086 151464155 151464278 3.390000e-13 87.9
14 TraesCS3D01G300300 chr6A 92.727 55 4 0 5851 5905 13742494 13742440 5.670000e-11 80.5
15 TraesCS3D01G300300 chrUn 96.939 98 2 1 2917 3014 94636247 94636343 5.470000e-36 163.0
16 TraesCS3D01G300300 chr2B 100.000 88 0 0 2928 3015 40438044 40437957 5.470000e-36 163.0
17 TraesCS3D01G300300 chr2B 95.146 103 5 0 2921 3023 647539349 647539451 5.470000e-36 163.0
18 TraesCS3D01G300300 chr2B 93.023 43 3 0 643 685 323085416 323085374 5.710000e-06 63.9
19 TraesCS3D01G300300 chr5A 95.146 103 3 2 2929 3029 483717191 483717293 1.970000e-35 161.0
20 TraesCS3D01G300300 chr1A 95.098 102 3 2 2929 3029 547903013 547903113 7.080000e-35 159.0
21 TraesCS3D01G300300 chr1A 86.567 67 1 4 621 679 12091283 12091217 4.420000e-07 67.6
22 TraesCS3D01G300300 chr7B 91.667 108 9 0 2910 3017 383005260 383005367 4.260000e-32 150.0
23 TraesCS3D01G300300 chr6D 92.453 53 4 0 5851 5903 12366651 12366599 7.340000e-10 76.8
24 TraesCS3D01G300300 chr4A 90.741 54 4 1 627 679 148132982 148133035 3.410000e-08 71.3
25 TraesCS3D01G300300 chr7D 87.931 58 5 2 623 679 602266360 602266416 4.420000e-07 67.6
26 TraesCS3D01G300300 chr6B 91.667 48 4 0 5856 5903 22723895 22723848 4.420000e-07 67.6
27 TraesCS3D01G300300 chr4D 85.938 64 6 3 627 687 323574892 323574829 1.590000e-06 65.8
28 TraesCS3D01G300300 chr5B 93.182 44 2 1 636 679 606018143 606018185 5.710000e-06 63.9
29 TraesCS3D01G300300 chr2A 93.023 43 3 0 643 685 285622344 285622302 5.710000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G300300 chr3D 415154475 415161296 6821 True 12598.000000 12598 100.000000 1 6822 1 chr3D.!!$R1 6821
1 TraesCS3D01G300300 chr3A 535194148 535200542 6394 False 2881.666667 5206 91.447333 1 6562 3 chr3A.!!$F1 6561
2 TraesCS3D01G300300 chr3B 541079773 541085336 5563 True 2501.333333 3969 92.716333 1135 6822 3 chr3B.!!$R2 5687
3 TraesCS3D01G300300 chr3B 541203073 541203671 598 True 815.000000 815 91.148000 1 607 1 chr3B.!!$R1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 855 0.036164 TGGTGCGATGCAGTACCTTT 59.964 50.0 13.16 0.0 45.42 3.11 F
1332 1361 0.323725 AGAAGAACATGCCCCGCAAT 60.324 50.0 0.00 0.0 43.62 3.56 F
1333 1362 0.532115 GAAGAACATGCCCCGCAATT 59.468 50.0 0.00 0.0 43.62 2.32 F
2793 2843 0.611896 TTTCTGCTAAAGCCCTGGCC 60.612 55.0 4.13 0.0 43.17 5.36 F
3960 4061 0.183971 AACCCAAATCCGTGTCCACA 59.816 50.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2196 0.183492 ACTGGCAAGAACCAAGCAGA 59.817 50.000 0.00 0.00 39.86 4.26 R
2212 2256 1.133356 ACCTCAGCAAGCTTTTCCCTT 60.133 47.619 0.00 0.00 0.00 3.95 R
2998 3048 2.829023 AGAAATACTCCCTCCGTTCCA 58.171 47.619 0.00 0.00 0.00 3.53 R
4399 4509 1.340889 GAAAGGGCATGCACTGTTTCA 59.659 47.619 26.17 0.00 0.00 2.69 R
5867 5983 0.538287 GACCCAGAAGTTGGCAGCTT 60.538 55.000 16.84 16.84 46.32 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 0.811281 AAAATACTGGAAGCTGCCGC 59.189 50.000 6.16 0.00 37.60 6.53
154 155 2.858344 CCTCTGCTCATACCGTAAAACG 59.142 50.000 0.00 0.00 42.11 3.60
156 157 3.247442 TCTGCTCATACCGTAAAACGTG 58.753 45.455 0.00 0.00 40.58 4.49
230 231 3.435105 TGTTTTGTGATGCAGGTTGAC 57.565 42.857 0.00 0.00 0.00 3.18
293 294 1.815421 CTCGGACGATTGGCTTGGG 60.815 63.158 0.00 0.00 0.00 4.12
334 335 5.106396 CCAAATAGAGTTCTTGCCACAGAAG 60.106 44.000 0.00 0.00 33.29 2.85
344 345 0.514691 GCCACAGAAGAGAAGCAACG 59.485 55.000 0.00 0.00 0.00 4.10
348 349 2.032054 CACAGAAGAGAAGCAACGCAAA 59.968 45.455 0.00 0.00 0.00 3.68
380 381 0.461961 GTAGGGTTCGCTGATGAGCT 59.538 55.000 1.81 0.00 43.77 4.09
432 433 5.585047 GGTTTATTCCTACTGCGATCACTTT 59.415 40.000 0.00 0.00 0.00 2.66
481 483 5.668080 TGTGACCAATGGTAATACCTCCATA 59.332 40.000 4.23 0.00 42.73 2.74
483 485 6.655003 GTGACCAATGGTAATACCTCCATATG 59.345 42.308 4.23 0.00 42.73 1.78
495 497 2.543861 CCTCCATATGTCCGAGAACACG 60.544 54.545 8.55 0.00 30.55 4.49
517 519 5.533154 ACGGAACATTCCTTTGTGATTTACA 59.467 36.000 8.97 0.00 45.33 2.41
521 523 8.237267 GGAACATTCCTTTGTGATTTACAGTAG 58.763 37.037 3.24 0.00 44.11 2.57
523 525 6.151144 ACATTCCTTTGTGATTTACAGTAGCC 59.849 38.462 0.00 0.00 41.10 3.93
524 526 5.235850 TCCTTTGTGATTTACAGTAGCCA 57.764 39.130 0.00 0.00 41.10 4.75
528 530 7.885922 TCCTTTGTGATTTACAGTAGCCATTTA 59.114 33.333 0.00 0.00 41.10 1.40
533 535 9.899661 TGTGATTTACAGTAGCCATTTATTACT 57.100 29.630 0.00 0.00 33.42 2.24
541 543 9.095065 ACAGTAGCCATTTATTACTTTTACGAG 57.905 33.333 0.00 0.00 0.00 4.18
542 544 9.309516 CAGTAGCCATTTATTACTTTTACGAGA 57.690 33.333 0.00 0.00 0.00 4.04
543 545 9.880157 AGTAGCCATTTATTACTTTTACGAGAA 57.120 29.630 0.00 0.00 0.00 2.87
571 573 2.092968 AGTTGTTTGTCAGCTGGAGTGA 60.093 45.455 15.13 0.00 36.30 3.41
592 596 5.355350 GTGAGGTGGATTTTCTGTAATCAGG 59.645 44.000 0.00 0.00 41.59 3.86
607 611 8.210946 TCTGTAATCAGGACCATAAACCAATAG 58.789 37.037 0.00 0.00 41.59 1.73
608 612 7.287061 TGTAATCAGGACCATAAACCAATAGG 58.713 38.462 0.00 0.00 42.21 2.57
648 652 8.803397 ACCCCTCTGTAAACAAATAAGTTATC 57.197 34.615 0.00 0.00 0.00 1.75
649 653 8.612145 ACCCCTCTGTAAACAAATAAGTTATCT 58.388 33.333 0.00 0.00 0.00 1.98
677 681 8.488651 AACGTCTTATATTTGTTTACAGAGGG 57.511 34.615 0.00 0.00 0.00 4.30
678 682 7.844009 ACGTCTTATATTTGTTTACAGAGGGA 58.156 34.615 0.00 0.00 0.00 4.20
680 684 9.326413 CGTCTTATATTTGTTTACAGAGGGATT 57.674 33.333 0.00 0.00 0.00 3.01
686 690 9.975218 ATATTTGTTTACAGAGGGATTGTTACT 57.025 29.630 0.00 0.00 0.00 2.24
689 693 6.833041 TGTTTACAGAGGGATTGTTACTGAA 58.167 36.000 0.00 0.00 33.53 3.02
698 702 8.383175 AGAGGGATTGTTACTGAACTGAAATAA 58.617 33.333 0.00 0.00 36.45 1.40
701 705 8.956426 GGGATTGTTACTGAACTGAAATAATGA 58.044 33.333 0.00 0.00 36.45 2.57
702 706 9.994432 GGATTGTTACTGAACTGAAATAATGAG 57.006 33.333 0.00 0.00 36.45 2.90
711 715 9.878599 CTGAACTGAAATAATGAGTTAAACGTT 57.121 29.630 0.00 0.00 30.01 3.99
712 716 9.658475 TGAACTGAAATAATGAGTTAAACGTTG 57.342 29.630 0.00 0.00 30.01 4.10
713 717 9.872757 GAACTGAAATAATGAGTTAAACGTTGA 57.127 29.630 0.00 0.00 30.01 3.18
714 718 9.878599 AACTGAAATAATGAGTTAAACGTTGAG 57.121 29.630 0.00 0.00 0.00 3.02
715 719 8.504005 ACTGAAATAATGAGTTAAACGTTGAGG 58.496 33.333 0.00 0.00 0.00 3.86
733 737 5.389859 TGAGGAAATCATTTGCAAATCGT 57.610 34.783 21.70 12.54 32.92 3.73
777 787 5.663456 TGATAATCAAATTGAAGGCAAGGC 58.337 37.500 0.00 0.00 37.45 4.35
781 791 2.145536 CAAATTGAAGGCAAGGCAACC 58.854 47.619 0.00 0.00 37.45 3.77
797 807 2.589540 CCATAGGGTGCCTCGCAA 59.410 61.111 0.00 0.00 41.47 4.85
798 808 1.077787 CCATAGGGTGCCTCGCAAA 60.078 57.895 0.00 0.00 41.47 3.68
799 809 0.466189 CCATAGGGTGCCTCGCAAAT 60.466 55.000 0.00 0.00 41.47 2.32
800 810 1.202758 CCATAGGGTGCCTCGCAAATA 60.203 52.381 0.00 0.00 41.47 1.40
801 811 2.571212 CATAGGGTGCCTCGCAAATAA 58.429 47.619 0.00 0.00 41.47 1.40
802 812 2.791347 TAGGGTGCCTCGCAAATAAA 57.209 45.000 0.00 0.00 41.47 1.40
803 813 2.143876 AGGGTGCCTCGCAAATAAAT 57.856 45.000 0.00 0.00 41.47 1.40
804 814 3.290948 AGGGTGCCTCGCAAATAAATA 57.709 42.857 0.00 0.00 41.47 1.40
805 815 3.626930 AGGGTGCCTCGCAAATAAATAA 58.373 40.909 0.00 0.00 41.47 1.40
806 816 4.020543 AGGGTGCCTCGCAAATAAATAAA 58.979 39.130 0.00 0.00 41.47 1.40
807 817 4.649218 AGGGTGCCTCGCAAATAAATAAAT 59.351 37.500 0.00 0.00 41.47 1.40
808 818 5.830991 AGGGTGCCTCGCAAATAAATAAATA 59.169 36.000 0.00 0.00 41.47 1.40
809 819 6.322712 AGGGTGCCTCGCAAATAAATAAATAA 59.677 34.615 0.00 0.00 41.47 1.40
810 820 6.981559 GGGTGCCTCGCAAATAAATAAATAAA 59.018 34.615 0.00 0.00 41.47 1.40
811 821 7.492994 GGGTGCCTCGCAAATAAATAAATAAAA 59.507 33.333 0.00 0.00 41.47 1.52
812 822 8.874816 GGTGCCTCGCAAATAAATAAATAAAAA 58.125 29.630 0.00 0.00 41.47 1.94
839 849 3.011085 CCATATGGTGCGATGCAGT 57.989 52.632 14.09 0.00 40.08 4.40
840 850 2.168326 CCATATGGTGCGATGCAGTA 57.832 50.000 14.09 0.00 40.08 2.74
841 851 1.800586 CCATATGGTGCGATGCAGTAC 59.199 52.381 14.09 0.00 40.08 2.73
842 852 1.800586 CATATGGTGCGATGCAGTACC 59.199 52.381 6.31 6.31 45.42 3.34
843 853 1.119684 TATGGTGCGATGCAGTACCT 58.880 50.000 13.16 3.58 45.42 3.08
844 854 0.253044 ATGGTGCGATGCAGTACCTT 59.747 50.000 13.16 5.51 45.42 3.50
845 855 0.036164 TGGTGCGATGCAGTACCTTT 59.964 50.000 13.16 0.00 45.42 3.11
846 856 1.165270 GGTGCGATGCAGTACCTTTT 58.835 50.000 6.04 0.00 42.52 2.27
847 857 1.130561 GGTGCGATGCAGTACCTTTTC 59.869 52.381 6.04 0.00 42.52 2.29
848 858 1.804151 GTGCGATGCAGTACCTTTTCA 59.196 47.619 0.00 0.00 40.08 2.69
849 859 2.420022 GTGCGATGCAGTACCTTTTCAT 59.580 45.455 0.00 0.00 40.08 2.57
850 860 3.081061 TGCGATGCAGTACCTTTTCATT 58.919 40.909 0.00 0.00 33.32 2.57
851 861 3.505680 TGCGATGCAGTACCTTTTCATTT 59.494 39.130 0.00 0.00 33.32 2.32
852 862 4.098416 GCGATGCAGTACCTTTTCATTTC 58.902 43.478 0.00 0.00 0.00 2.17
853 863 4.142600 GCGATGCAGTACCTTTTCATTTCT 60.143 41.667 0.00 0.00 0.00 2.52
854 864 5.064707 GCGATGCAGTACCTTTTCATTTCTA 59.935 40.000 0.00 0.00 0.00 2.10
855 865 6.478588 CGATGCAGTACCTTTTCATTTCTAC 58.521 40.000 0.00 0.00 0.00 2.59
856 866 6.092122 CGATGCAGTACCTTTTCATTTCTACA 59.908 38.462 0.00 0.00 0.00 2.74
857 867 7.201644 CGATGCAGTACCTTTTCATTTCTACAT 60.202 37.037 0.00 0.00 0.00 2.29
858 868 7.759489 TGCAGTACCTTTTCATTTCTACATT 57.241 32.000 0.00 0.00 0.00 2.71
859 869 8.177119 TGCAGTACCTTTTCATTTCTACATTT 57.823 30.769 0.00 0.00 0.00 2.32
860 870 8.296713 TGCAGTACCTTTTCATTTCTACATTTC 58.703 33.333 0.00 0.00 0.00 2.17
861 871 7.755373 GCAGTACCTTTTCATTTCTACATTTCC 59.245 37.037 0.00 0.00 0.00 3.13
877 887 4.526650 ACATTTCCCGGCAGAAATTTAACT 59.473 37.500 13.98 0.00 42.46 2.24
893 904 9.124807 GAAATTTAACTCGAATTCCACGAAAAT 57.875 29.630 0.00 0.00 39.23 1.82
894 905 8.669394 AATTTAACTCGAATTCCACGAAAATC 57.331 30.769 0.00 0.00 39.23 2.17
896 907 5.941948 AACTCGAATTCCACGAAAATCTT 57.058 34.783 0.00 0.00 39.23 2.40
897 908 8.537049 TTAACTCGAATTCCACGAAAATCTTA 57.463 30.769 0.00 0.00 39.23 2.10
898 909 7.429636 AACTCGAATTCCACGAAAATCTTAA 57.570 32.000 0.00 0.00 39.23 1.85
899 910 7.611213 ACTCGAATTCCACGAAAATCTTAAT 57.389 32.000 0.00 0.00 39.23 1.40
900 911 7.464358 ACTCGAATTCCACGAAAATCTTAATG 58.536 34.615 0.00 0.00 39.23 1.90
901 912 6.255215 TCGAATTCCACGAAAATCTTAATGC 58.745 36.000 0.00 0.00 36.84 3.56
902 913 6.027131 CGAATTCCACGAAAATCTTAATGCA 58.973 36.000 0.00 0.00 0.00 3.96
903 914 6.195244 CGAATTCCACGAAAATCTTAATGCAG 59.805 38.462 0.00 0.00 0.00 4.41
928 939 1.136057 CAAACGCTCGGGCTAAAGAAC 60.136 52.381 5.36 0.00 36.09 3.01
967 985 4.785453 GAGTTGGGAGCTGGGGCG 62.785 72.222 0.00 0.00 44.37 6.13
980 998 3.804329 GGGCGCCCTATCCACCAA 61.804 66.667 38.76 0.00 0.00 3.67
986 1010 1.408127 CGCCCTATCCACCAAACATCA 60.408 52.381 0.00 0.00 0.00 3.07
992 1016 2.746279 TCCACCAAACATCAACCACT 57.254 45.000 0.00 0.00 0.00 4.00
1012 1040 1.958205 CCGTAGGCATAGCAGCAGC 60.958 63.158 0.00 0.00 46.14 5.25
1030 1058 2.243957 CGACAGAGCGCAACACCAA 61.244 57.895 11.47 0.00 0.00 3.67
1239 1268 4.838152 CGCCGCACCCTGTAGCAT 62.838 66.667 0.00 0.00 0.00 3.79
1240 1269 2.897350 GCCGCACCCTGTAGCATC 60.897 66.667 0.00 0.00 0.00 3.91
1241 1270 2.586079 CCGCACCCTGTAGCATCG 60.586 66.667 0.00 0.00 0.00 3.84
1242 1271 2.184322 CGCACCCTGTAGCATCGT 59.816 61.111 0.00 0.00 0.00 3.73
1243 1272 1.878522 CGCACCCTGTAGCATCGTC 60.879 63.158 0.00 0.00 0.00 4.20
1244 1273 1.521681 GCACCCTGTAGCATCGTCC 60.522 63.158 0.00 0.00 0.00 4.79
1245 1274 1.144057 CACCCTGTAGCATCGTCCC 59.856 63.158 0.00 0.00 0.00 4.46
1246 1275 2.064581 ACCCTGTAGCATCGTCCCC 61.065 63.158 0.00 0.00 0.00 4.81
1247 1276 2.808206 CCCTGTAGCATCGTCCCCC 61.808 68.421 0.00 0.00 0.00 5.40
1248 1277 1.762460 CCTGTAGCATCGTCCCCCT 60.762 63.158 0.00 0.00 0.00 4.79
1256 1285 1.152922 ATCGTCCCCCTCTCGTCTC 60.153 63.158 0.00 0.00 0.00 3.36
1266 1295 2.943690 CCCTCTCGTCTCGATACTTGAA 59.056 50.000 0.00 0.00 34.61 2.69
1271 1300 1.466866 CGTCTCGATACTTGAACGCCA 60.467 52.381 0.00 0.00 0.00 5.69
1285 1314 0.463654 ACGCCAGTTCTGCAACTCAA 60.464 50.000 0.00 0.00 41.24 3.02
1312 1341 6.256053 ACAGATTGACCAACATTTAGGGATT 58.744 36.000 0.00 0.00 0.00 3.01
1316 1345 8.336235 AGATTGACCAACATTTAGGGATTAGAA 58.664 33.333 0.00 0.00 0.00 2.10
1320 1349 7.610305 TGACCAACATTTAGGGATTAGAAGAAC 59.390 37.037 0.00 0.00 0.00 3.01
1321 1350 7.466804 ACCAACATTTAGGGATTAGAAGAACA 58.533 34.615 0.00 0.00 0.00 3.18
1326 1355 3.584733 AGGGATTAGAAGAACATGCCC 57.415 47.619 0.00 0.00 34.52 5.36
1327 1356 2.175715 AGGGATTAGAAGAACATGCCCC 59.824 50.000 0.00 0.00 34.87 5.80
1332 1361 0.323725 AGAAGAACATGCCCCGCAAT 60.324 50.000 0.00 0.00 43.62 3.56
1333 1362 0.532115 GAAGAACATGCCCCGCAATT 59.468 50.000 0.00 0.00 43.62 2.32
1376 1406 9.326413 TCTAGCACTGCTTTTAAATAGGAATAC 57.674 33.333 9.30 0.00 40.44 1.89
1379 1409 6.199393 CACTGCTTTTAAATAGGAATACGCC 58.801 40.000 0.00 0.00 0.00 5.68
1402 1435 7.148820 CGCCTTTGTTAATTCAGGTGTATTTTG 60.149 37.037 0.00 0.00 0.00 2.44
1404 1437 8.977505 CCTTTGTTAATTCAGGTGTATTTTGTG 58.022 33.333 0.00 0.00 0.00 3.33
1405 1438 8.879342 TTTGTTAATTCAGGTGTATTTTGTGG 57.121 30.769 0.00 0.00 0.00 4.17
1412 1445 5.897050 TCAGGTGTATTTTGTGGTTTCAAC 58.103 37.500 0.00 0.00 0.00 3.18
1480 1513 9.053840 CAGTTCATCTTATTAGAGCATGTCATT 57.946 33.333 0.00 0.00 32.92 2.57
1481 1514 9.053840 AGTTCATCTTATTAGAGCATGTCATTG 57.946 33.333 0.00 0.00 32.92 2.82
1482 1515 8.834465 GTTCATCTTATTAGAGCATGTCATTGT 58.166 33.333 0.00 0.00 32.92 2.71
1483 1516 8.969260 TCATCTTATTAGAGCATGTCATTGTT 57.031 30.769 0.00 0.00 32.92 2.83
1484 1517 9.399797 TCATCTTATTAGAGCATGTCATTGTTT 57.600 29.630 0.00 0.00 32.92 2.83
1512 1545 1.072173 TGCTCTGGTGCAGTTGTATGT 59.928 47.619 0.00 0.00 38.12 2.29
1519 1552 3.009584 TGGTGCAGTTGTATGTCCCATTA 59.990 43.478 0.00 0.00 0.00 1.90
1551 1584 1.822990 ACGACTGTATGTAGGTGTGGG 59.177 52.381 0.00 0.00 0.00 4.61
1552 1585 1.822990 CGACTGTATGTAGGTGTGGGT 59.177 52.381 0.00 0.00 0.00 4.51
1557 1590 4.781087 ACTGTATGTAGGTGTGGGTATTGT 59.219 41.667 0.00 0.00 0.00 2.71
1558 1591 5.092554 TGTATGTAGGTGTGGGTATTGTG 57.907 43.478 0.00 0.00 0.00 3.33
1569 1602 1.450312 GTATTGTGCCGCTCCAGCT 60.450 57.895 0.00 0.00 39.32 4.24
1589 1625 4.891727 GGCGATCGACCCGTGCAT 62.892 66.667 21.57 0.00 0.00 3.96
1594 1630 0.802494 GATCGACCCGTGCATGTTTT 59.198 50.000 4.96 0.00 0.00 2.43
1602 1638 2.091541 CCGTGCATGTTTTGGACCTAT 58.908 47.619 4.96 0.00 43.27 2.57
1603 1639 2.097466 CCGTGCATGTTTTGGACCTATC 59.903 50.000 4.96 0.00 43.27 2.08
1604 1640 2.746904 CGTGCATGTTTTGGACCTATCA 59.253 45.455 0.00 0.00 43.27 2.15
1611 1647 3.190327 TGTTTTGGACCTATCACATTGCG 59.810 43.478 0.00 0.00 0.00 4.85
1612 1648 2.779755 TTGGACCTATCACATTGCGT 57.220 45.000 0.00 0.00 0.00 5.24
1642 1678 1.655484 CAAGGCATATCTGTGTGCGA 58.345 50.000 0.00 0.00 42.72 5.10
1727 1763 8.934023 TGAGGTTCTGTTACAAAATAAATCCT 57.066 30.769 0.00 0.00 0.00 3.24
1729 1765 7.602753 AGGTTCTGTTACAAAATAAATCCTGC 58.397 34.615 0.00 0.00 0.00 4.85
1817 1853 6.644248 AAAATAAACACCACAGTAAGGACC 57.356 37.500 0.00 0.00 0.00 4.46
1988 2024 0.823356 GCTTCTTTGCCACCACCTCA 60.823 55.000 0.00 0.00 0.00 3.86
1995 2031 2.034066 CCACCACCTCACCGCAAT 59.966 61.111 0.00 0.00 0.00 3.56
2151 2195 5.106712 TGCAAATCGAACCTCACTATTGAAC 60.107 40.000 0.00 0.00 0.00 3.18
2152 2196 5.122396 GCAAATCGAACCTCACTATTGAACT 59.878 40.000 0.00 0.00 0.00 3.01
2191 2235 6.183360 GCCAGTATGCATTGAATATAGAGCAG 60.183 42.308 3.54 0.00 35.26 4.24
2242 2286 2.945668 GCTTGCTGAGGTACCTTAATGG 59.054 50.000 17.53 1.16 42.93 3.16
2426 2470 4.319477 CGCGGTATGTTGATATTTCCTTGG 60.319 45.833 0.00 0.00 0.00 3.61
2432 2476 4.519213 TGTTGATATTTCCTTGGTACCCG 58.481 43.478 10.07 0.00 0.00 5.28
2581 2631 4.053295 CAAAGTTGGTTCATTTGGCAGAG 58.947 43.478 0.00 0.00 31.73 3.35
2793 2843 0.611896 TTTCTGCTAAAGCCCTGGCC 60.612 55.000 4.13 0.00 43.17 5.36
2936 2986 8.697507 ATAATTCCATTGATTGTTACTCCCTC 57.302 34.615 0.00 0.00 0.00 4.30
2937 2987 4.503714 TCCATTGATTGTTACTCCCTCC 57.496 45.455 0.00 0.00 0.00 4.30
2940 2990 4.261801 CATTGATTGTTACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
2941 2991 3.604875 TGATTGTTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2942 2992 2.235402 TGATTGTTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
2943 2993 1.719529 TTGTTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
2944 2994 1.719529 TGTTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
2946 2996 2.438763 TGTTACTCCCTCCGTTCCAAAA 59.561 45.455 0.00 0.00 0.00 2.44
2947 2997 3.073356 TGTTACTCCCTCCGTTCCAAAAT 59.927 43.478 0.00 0.00 0.00 1.82
2948 2998 4.286549 TGTTACTCCCTCCGTTCCAAAATA 59.713 41.667 0.00 0.00 0.00 1.40
2949 2999 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2950 3000 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2952 3002 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2955 3005 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2956 3006 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2957 3007 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2958 3008 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2959 3009 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2960 3010 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2961 3011 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2962 3012 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2963 3013 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2964 3014 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2966 3016 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2967 3017 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2968 3018 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2970 3020 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2975 3025 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2976 3026 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2977 3027 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
2990 3040 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
2991 3041 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
2992 3042 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
2993 3043 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2994 3044 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2995 3045 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2997 3047 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2998 3048 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2999 3049 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3000 3050 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3001 3051 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3003 3053 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3006 3056 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3008 3058 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3009 3059 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3011 3061 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3013 3063 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3014 3064 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
3016 3066 4.376225 TTTTGGAACGGAGGGAGTATTT 57.624 40.909 0.00 0.00 0.00 1.40
3017 3067 3.622166 TTGGAACGGAGGGAGTATTTC 57.378 47.619 0.00 0.00 0.00 2.17
3018 3068 2.829023 TGGAACGGAGGGAGTATTTCT 58.171 47.619 0.00 0.00 0.00 2.52
3505 3590 4.276926 ACAGTTCCAAGCAAATCTCAGTTC 59.723 41.667 0.00 0.00 0.00 3.01
3563 3650 7.363431 AGTGCTAATTTTGTCAAGTTTAGAGC 58.637 34.615 15.52 8.89 0.00 4.09
3960 4061 0.183971 AACCCAAATCCGTGTCCACA 59.816 50.000 0.00 0.00 0.00 4.17
3991 4092 1.284785 CCAGGTGGTGGGATTGTACAT 59.715 52.381 0.00 0.00 43.63 2.29
4223 4332 8.950007 TTTAATCTACAGGGTTCCAAATCTTT 57.050 30.769 0.00 0.00 0.00 2.52
4279 4389 8.102676 ACATTATGATGCTGTGGTATTGCTATA 58.897 33.333 0.00 0.00 36.72 1.31
4374 4484 6.461451 TCCTAATCCATATATATGTGGGGCT 58.539 40.000 23.82 13.30 39.29 5.19
4437 4547 3.510388 TTCTGTGCTCTTCAGATACCG 57.490 47.619 0.00 0.00 40.83 4.02
4449 4559 4.937201 TCAGATACCGTGTGCTGAATAT 57.063 40.909 0.00 0.00 34.71 1.28
4578 4689 4.262592 CCTTTTTGTCAAGAATGAAGGGGG 60.263 45.833 0.00 0.00 37.30 5.40
4648 4760 8.861101 CAACAGTGTTTAAAACAACCGAAAATA 58.139 29.630 5.57 0.00 44.16 1.40
4732 4845 9.875708 AGATCTTCTCCAGTCTGTTTACTATAT 57.124 33.333 0.00 0.00 0.00 0.86
5064 5179 2.872858 AGTTTGAGTTCCTCGTTTGCTC 59.127 45.455 0.00 0.00 32.35 4.26
5067 5182 1.627550 GAGTTCCTCGTTTGCTCGGC 61.628 60.000 0.00 0.00 0.00 5.54
5073 5188 1.144969 CTCGTTTGCTCGGCTGTTTA 58.855 50.000 0.00 0.00 0.00 2.01
5106 5221 8.498054 TTTTTGCCAAAGTGAATTGTTGATTA 57.502 26.923 0.00 0.00 0.00 1.75
5461 5577 8.226810 AGGATCAGAGAAGATAGAGAATCAAGA 58.773 37.037 0.00 0.00 37.82 3.02
5507 5623 1.705186 ACTGAGTGGGCAGGTGTAATT 59.295 47.619 0.00 0.00 40.20 1.40
5685 5801 8.488668 TCAATGAATGTGAAGAAGATCCTGATA 58.511 33.333 0.00 0.00 0.00 2.15
5785 5901 6.726230 ACTACTACATCATACGTACTTGCAG 58.274 40.000 0.00 0.00 0.00 4.41
5808 5924 7.607991 GCAGTTTTGCTGGAGTATATGGTATAT 59.392 37.037 0.00 0.00 46.95 0.86
5838 5954 5.391736 GCTTCACGTACAGTACAGTACAGAT 60.392 44.000 23.35 9.40 43.49 2.90
5844 5960 5.106436 CGTACAGTACAGTACAGATGTTGGA 60.106 44.000 23.35 0.00 43.49 3.53
5867 5983 6.038936 GGACTTCTTGTGTTTGGTTAAGCTTA 59.961 38.462 0.86 0.86 0.00 3.09
5946 6070 0.759959 TTAGGGCAAGTCCAACACGA 59.240 50.000 0.00 0.00 36.21 4.35
5975 6099 2.736721 AGACGAACACATCAAATGTCCG 59.263 45.455 0.00 0.00 42.70 4.79
5980 6104 4.031765 CGAACACATCAAATGTCCGTAGAG 59.968 45.833 0.00 0.00 42.70 2.43
5981 6105 3.861840 ACACATCAAATGTCCGTAGAGG 58.138 45.455 0.00 0.00 42.70 3.69
5982 6106 2.609459 CACATCAAATGTCCGTAGAGGC 59.391 50.000 0.00 0.00 42.70 4.70
5983 6107 1.860950 CATCAAATGTCCGTAGAGGCG 59.139 52.381 0.00 0.00 40.77 5.52
5985 6109 2.093890 TCAAATGTCCGTAGAGGCGTA 58.906 47.619 0.00 0.00 40.77 4.42
5986 6110 2.098607 TCAAATGTCCGTAGAGGCGTAG 59.901 50.000 0.00 0.00 40.77 3.51
5987 6111 2.048444 AATGTCCGTAGAGGCGTAGA 57.952 50.000 0.00 0.00 40.77 2.59
5988 6112 1.307097 ATGTCCGTAGAGGCGTAGAC 58.693 55.000 0.00 0.00 40.77 2.59
5989 6113 0.036105 TGTCCGTAGAGGCGTAGACA 60.036 55.000 0.00 0.00 39.87 3.41
6014 6138 2.849942 TGTCTGCGGATATTGAATGGG 58.150 47.619 0.00 0.00 0.00 4.00
6019 6143 1.826385 CGGATATTGAATGGGGGAGC 58.174 55.000 0.00 0.00 0.00 4.70
6021 6145 1.428912 GGATATTGAATGGGGGAGCCA 59.571 52.381 0.00 0.00 0.00 4.75
6024 6148 1.587522 ATTGAATGGGGGAGCCAGCT 61.588 55.000 0.00 0.00 0.00 4.24
6039 6163 1.202463 CCAGCTATCCAACCAGAGTCG 60.202 57.143 0.00 0.00 0.00 4.18
6049 6173 2.409870 CCAGAGTCGCCAAATGCCC 61.410 63.158 0.00 0.00 36.24 5.36
6069 6193 4.475135 GCCTGGTCCGGCCTTCTC 62.475 72.222 14.76 0.00 44.41 2.87
6163 6288 6.866480 ACAAAAAGCATCGGATGTTCAATAT 58.134 32.000 18.54 0.00 0.00 1.28
6193 6318 3.084786 CTCCAACTGATCCCAAAAGTCC 58.915 50.000 0.00 0.00 0.00 3.85
6241 6366 3.237741 GCTCCAGCCCGGCTATCT 61.238 66.667 12.83 0.00 36.40 1.98
6323 6448 4.475016 ACATGGTAGGCTAGGACAATCTTT 59.525 41.667 0.00 0.00 0.00 2.52
6334 6459 4.410099 AGGACAATCTTTGCCAAATCAGA 58.590 39.130 0.00 0.00 31.84 3.27
6382 6507 6.725364 ACAATATCTTGGAGTCATTGGAAGT 58.275 36.000 0.00 0.00 36.64 3.01
6436 6561 3.072211 TGAGCTTGTCTTGCATCTTCAG 58.928 45.455 0.00 0.00 0.00 3.02
6584 6713 1.560146 CCTTTACCCACTTCCTCCCTC 59.440 57.143 0.00 0.00 0.00 4.30
6586 6715 2.426431 TTACCCACTTCCTCCCTCAA 57.574 50.000 0.00 0.00 0.00 3.02
6608 6737 1.136305 TCCTAATCACCTTCTTCGCCG 59.864 52.381 0.00 0.00 0.00 6.46
6615 6744 1.671054 CCTTCTTCGCCGGAGCAAA 60.671 57.895 5.05 0.00 39.83 3.68
6677 6806 2.034879 ATTGAGCACGGCGGTCTTG 61.035 57.895 13.24 0.40 42.88 3.02
6707 6836 2.352388 GCAATAGTGGCAGGTCGTTTA 58.648 47.619 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.362397 TCAACTCCAAGCCTAGCTATCG 59.638 50.000 0.00 0.00 38.25 2.92
230 231 0.531657 CTCTCAGGGAGTGCTCAGTG 59.468 60.000 1.41 0.00 37.30 3.66
293 294 0.804544 TGGCAGCGCGTATAACAGTC 60.805 55.000 8.43 0.00 0.00 3.51
334 335 6.452244 ACATAAAAATTTGCGTTGCTTCTC 57.548 33.333 0.00 0.00 0.00 2.87
344 345 3.789224 CCCTACGCGACATAAAAATTTGC 59.211 43.478 15.93 0.00 0.00 3.68
348 349 3.307782 CGAACCCTACGCGACATAAAAAT 59.692 43.478 15.93 0.00 0.00 1.82
380 381 6.698008 AATTATCATCTGGCGAACATCAAA 57.302 33.333 0.00 0.00 0.00 2.69
432 433 0.388659 AGCGTGCCATTCAGCAAAAA 59.611 45.000 0.00 0.00 46.19 1.94
445 446 0.878523 TGGTCACAACACTAGCGTGC 60.879 55.000 0.00 0.00 45.10 5.34
495 497 6.981722 ACTGTAAATCACAAAGGAATGTTCC 58.018 36.000 3.54 3.54 41.42 3.62
517 519 9.880157 TTCTCGTAAAAGTAATAAATGGCTACT 57.120 29.630 0.00 0.00 0.00 2.57
528 530 9.180678 CAACTGCATTTTTCTCGTAAAAGTAAT 57.819 29.630 0.00 0.00 31.14 1.89
530 532 7.699566 ACAACTGCATTTTTCTCGTAAAAGTA 58.300 30.769 0.00 0.00 31.14 2.24
532 534 7.449934 AACAACTGCATTTTTCTCGTAAAAG 57.550 32.000 0.00 0.00 31.14 2.27
533 535 7.329717 ACAAACAACTGCATTTTTCTCGTAAAA 59.670 29.630 0.00 0.00 0.00 1.52
534 536 6.809196 ACAAACAACTGCATTTTTCTCGTAAA 59.191 30.769 0.00 0.00 0.00 2.01
535 537 6.326375 ACAAACAACTGCATTTTTCTCGTAA 58.674 32.000 0.00 0.00 0.00 3.18
536 538 5.885881 ACAAACAACTGCATTTTTCTCGTA 58.114 33.333 0.00 0.00 0.00 3.43
537 539 4.743493 ACAAACAACTGCATTTTTCTCGT 58.257 34.783 0.00 0.00 0.00 4.18
538 540 4.797868 TGACAAACAACTGCATTTTTCTCG 59.202 37.500 0.00 0.00 0.00 4.04
539 541 5.276536 GCTGACAAACAACTGCATTTTTCTC 60.277 40.000 0.00 0.00 0.00 2.87
540 542 4.567959 GCTGACAAACAACTGCATTTTTCT 59.432 37.500 0.00 0.00 0.00 2.52
541 543 4.567959 AGCTGACAAACAACTGCATTTTTC 59.432 37.500 0.00 0.00 34.35 2.29
542 544 4.330620 CAGCTGACAAACAACTGCATTTTT 59.669 37.500 8.42 0.00 36.20 1.94
543 545 3.866910 CAGCTGACAAACAACTGCATTTT 59.133 39.130 8.42 0.00 36.20 1.82
544 546 3.450578 CAGCTGACAAACAACTGCATTT 58.549 40.909 8.42 0.00 36.20 2.32
571 573 5.501156 GTCCTGATTACAGAAAATCCACCT 58.499 41.667 0.00 0.00 46.03 4.00
622 626 9.895138 GATAACTTATTTGTTTACAGAGGGGTA 57.105 33.333 0.00 0.00 0.00 3.69
623 627 8.612145 AGATAACTTATTTGTTTACAGAGGGGT 58.388 33.333 0.00 0.00 0.00 4.95
651 655 8.943002 CCCTCTGTAAACAAATATAAGACGTTT 58.057 33.333 0.00 0.00 34.40 3.60
652 656 8.316214 TCCCTCTGTAAACAAATATAAGACGTT 58.684 33.333 0.00 0.00 0.00 3.99
653 657 7.844009 TCCCTCTGTAAACAAATATAAGACGT 58.156 34.615 0.00 0.00 0.00 4.34
654 658 8.888579 ATCCCTCTGTAAACAAATATAAGACG 57.111 34.615 0.00 0.00 0.00 4.18
660 664 9.975218 AGTAACAATCCCTCTGTAAACAAATAT 57.025 29.630 0.00 0.00 0.00 1.28
661 665 9.226606 CAGTAACAATCCCTCTGTAAACAAATA 57.773 33.333 0.00 0.00 0.00 1.40
662 666 7.942341 TCAGTAACAATCCCTCTGTAAACAAAT 59.058 33.333 0.00 0.00 0.00 2.32
663 667 7.284074 TCAGTAACAATCCCTCTGTAAACAAA 58.716 34.615 0.00 0.00 0.00 2.83
664 668 6.833041 TCAGTAACAATCCCTCTGTAAACAA 58.167 36.000 0.00 0.00 0.00 2.83
665 669 6.428083 TCAGTAACAATCCCTCTGTAAACA 57.572 37.500 0.00 0.00 0.00 2.83
671 675 5.152623 TCAGTTCAGTAACAATCCCTCTG 57.847 43.478 0.00 0.00 38.12 3.35
673 677 8.561738 TTATTTCAGTTCAGTAACAATCCCTC 57.438 34.615 0.00 0.00 38.12 4.30
675 679 8.956426 TCATTATTTCAGTTCAGTAACAATCCC 58.044 33.333 0.00 0.00 38.12 3.85
676 680 9.994432 CTCATTATTTCAGTTCAGTAACAATCC 57.006 33.333 0.00 0.00 38.12 3.01
684 688 9.052759 ACGTTTAACTCATTATTTCAGTTCAGT 57.947 29.630 0.00 0.00 32.56 3.41
686 690 9.658475 CAACGTTTAACTCATTATTTCAGTTCA 57.342 29.630 0.00 0.00 32.56 3.18
689 693 8.504005 CCTCAACGTTTAACTCATTATTTCAGT 58.496 33.333 0.00 0.00 0.00 3.41
698 702 7.687941 ATGATTTCCTCAACGTTTAACTCAT 57.312 32.000 0.00 4.12 37.44 2.90
701 705 6.640907 GCAAATGATTTCCTCAACGTTTAACT 59.359 34.615 0.00 0.00 37.44 2.24
702 706 6.419413 TGCAAATGATTTCCTCAACGTTTAAC 59.581 34.615 0.00 0.00 37.44 2.01
704 708 6.078202 TGCAAATGATTTCCTCAACGTTTA 57.922 33.333 0.00 0.00 37.44 2.01
706 710 4.582701 TGCAAATGATTTCCTCAACGTT 57.417 36.364 0.00 0.00 37.44 3.99
708 712 5.220080 CGATTTGCAAATGATTTCCTCAACG 60.220 40.000 28.67 16.37 37.44 4.10
709 713 5.634859 ACGATTTGCAAATGATTTCCTCAAC 59.365 36.000 28.67 8.92 37.44 3.18
711 715 5.162794 CACGATTTGCAAATGATTTCCTCA 58.837 37.500 28.67 0.00 38.53 3.86
712 716 5.163513 ACACGATTTGCAAATGATTTCCTC 58.836 37.500 28.67 11.75 0.00 3.71
713 717 5.138125 ACACGATTTGCAAATGATTTCCT 57.862 34.783 28.67 3.12 0.00 3.36
714 718 6.183360 GGTTACACGATTTGCAAATGATTTCC 60.183 38.462 28.67 16.46 0.00 3.13
715 719 6.586082 AGGTTACACGATTTGCAAATGATTTC 59.414 34.615 28.67 13.89 0.00 2.17
760 770 2.224257 GGTTGCCTTGCCTTCAATTTGA 60.224 45.455 0.00 0.00 0.00 2.69
762 772 1.767681 TGGTTGCCTTGCCTTCAATTT 59.232 42.857 0.00 0.00 0.00 1.82
765 775 2.170166 CTATGGTTGCCTTGCCTTCAA 58.830 47.619 0.00 0.00 0.00 2.69
777 787 1.819632 GCGAGGCACCCTATGGTTG 60.820 63.158 0.00 0.00 44.75 3.77
781 791 2.254546 TATTTGCGAGGCACCCTATG 57.745 50.000 0.00 0.00 38.71 2.23
821 831 1.800586 GTACTGCATCGCACCATATGG 59.199 52.381 20.68 20.68 42.17 2.74
822 832 1.800586 GGTACTGCATCGCACCATATG 59.199 52.381 0.00 0.00 33.79 1.78
823 833 1.694150 AGGTACTGCATCGCACCATAT 59.306 47.619 8.37 0.00 37.18 1.78
824 834 1.119684 AGGTACTGCATCGCACCATA 58.880 50.000 8.37 0.00 37.18 2.74
825 835 0.253044 AAGGTACTGCATCGCACCAT 59.747 50.000 8.37 0.00 40.86 3.55
826 836 0.036164 AAAGGTACTGCATCGCACCA 59.964 50.000 8.37 0.00 40.86 4.17
827 837 1.130561 GAAAAGGTACTGCATCGCACC 59.869 52.381 0.00 0.00 40.86 5.01
828 838 1.804151 TGAAAAGGTACTGCATCGCAC 59.196 47.619 0.00 0.00 40.86 5.34
829 839 2.177394 TGAAAAGGTACTGCATCGCA 57.823 45.000 0.00 0.00 40.86 5.10
830 840 3.764885 AATGAAAAGGTACTGCATCGC 57.235 42.857 0.00 0.00 40.86 4.58
831 841 5.551760 AGAAATGAAAAGGTACTGCATCG 57.448 39.130 0.00 0.00 40.86 3.84
832 842 7.377766 TGTAGAAATGAAAAGGTACTGCATC 57.622 36.000 0.00 0.00 40.86 3.91
833 843 7.944729 ATGTAGAAATGAAAAGGTACTGCAT 57.055 32.000 0.00 0.00 40.86 3.96
834 844 7.759489 AATGTAGAAATGAAAAGGTACTGCA 57.241 32.000 0.00 0.00 40.86 4.41
835 845 7.755373 GGAAATGTAGAAATGAAAAGGTACTGC 59.245 37.037 0.00 0.00 40.86 4.40
836 846 8.244113 GGGAAATGTAGAAATGAAAAGGTACTG 58.756 37.037 0.00 0.00 40.86 2.74
838 848 7.248437 CGGGAAATGTAGAAATGAAAAGGTAC 58.752 38.462 0.00 0.00 0.00 3.34
839 849 6.376018 CCGGGAAATGTAGAAATGAAAAGGTA 59.624 38.462 0.00 0.00 0.00 3.08
840 850 5.185056 CCGGGAAATGTAGAAATGAAAAGGT 59.815 40.000 0.00 0.00 0.00 3.50
841 851 5.650543 CCGGGAAATGTAGAAATGAAAAGG 58.349 41.667 0.00 0.00 0.00 3.11
842 852 5.102313 GCCGGGAAATGTAGAAATGAAAAG 58.898 41.667 2.18 0.00 0.00 2.27
843 853 4.524714 TGCCGGGAAATGTAGAAATGAAAA 59.475 37.500 2.18 0.00 0.00 2.29
844 854 4.082845 TGCCGGGAAATGTAGAAATGAAA 58.917 39.130 2.18 0.00 0.00 2.69
845 855 3.691575 TGCCGGGAAATGTAGAAATGAA 58.308 40.909 2.18 0.00 0.00 2.57
846 856 3.054728 TCTGCCGGGAAATGTAGAAATGA 60.055 43.478 2.18 0.00 0.00 2.57
847 857 3.278574 TCTGCCGGGAAATGTAGAAATG 58.721 45.455 2.18 0.00 0.00 2.32
848 858 3.644966 TCTGCCGGGAAATGTAGAAAT 57.355 42.857 2.18 0.00 0.00 2.17
849 859 3.426787 TTCTGCCGGGAAATGTAGAAA 57.573 42.857 2.18 0.00 31.57 2.52
850 860 3.426787 TTTCTGCCGGGAAATGTAGAA 57.573 42.857 2.18 0.00 32.46 2.10
851 861 3.644966 ATTTCTGCCGGGAAATGTAGA 57.355 42.857 15.37 0.00 42.23 2.59
852 862 4.718940 AAATTTCTGCCGGGAAATGTAG 57.281 40.909 16.45 0.00 42.77 2.74
853 863 5.712917 AGTTAAATTTCTGCCGGGAAATGTA 59.287 36.000 16.45 13.33 42.77 2.29
854 864 4.526650 AGTTAAATTTCTGCCGGGAAATGT 59.473 37.500 16.45 14.15 42.77 2.71
855 865 5.072040 AGTTAAATTTCTGCCGGGAAATG 57.928 39.130 16.45 0.00 42.77 2.32
856 866 4.142469 CGAGTTAAATTTCTGCCGGGAAAT 60.142 41.667 11.59 11.59 44.66 2.17
857 867 3.189702 CGAGTTAAATTTCTGCCGGGAAA 59.810 43.478 2.18 5.90 39.16 3.13
858 868 2.745281 CGAGTTAAATTTCTGCCGGGAA 59.255 45.455 2.18 0.00 0.00 3.97
859 869 2.027929 TCGAGTTAAATTTCTGCCGGGA 60.028 45.455 2.18 0.00 0.00 5.14
860 870 2.352388 TCGAGTTAAATTTCTGCCGGG 58.648 47.619 2.18 0.00 0.00 5.73
861 871 4.616181 ATTCGAGTTAAATTTCTGCCGG 57.384 40.909 0.00 0.00 0.00 6.13
877 887 6.128145 TGCATTAAGATTTTCGTGGAATTCGA 60.128 34.615 0.00 0.00 35.50 3.71
916 927 0.712222 GTCGTTCGTTCTTTAGCCCG 59.288 55.000 0.00 0.00 0.00 6.13
921 932 2.361757 TGGACCAGTCGTTCGTTCTTTA 59.638 45.455 0.00 0.00 0.00 1.85
928 939 2.261671 CCCTGGACCAGTCGTTCG 59.738 66.667 20.24 3.57 0.00 3.95
950 968 4.785453 CGCCCCAGCTCCCAACTC 62.785 72.222 0.00 0.00 36.60 3.01
967 985 2.427095 GTTGATGTTTGGTGGATAGGGC 59.573 50.000 0.00 0.00 0.00 5.19
968 986 3.023832 GGTTGATGTTTGGTGGATAGGG 58.976 50.000 0.00 0.00 0.00 3.53
969 987 3.443681 GTGGTTGATGTTTGGTGGATAGG 59.556 47.826 0.00 0.00 0.00 2.57
970 988 4.335416 AGTGGTTGATGTTTGGTGGATAG 58.665 43.478 0.00 0.00 0.00 2.08
971 989 4.380843 AGTGGTTGATGTTTGGTGGATA 57.619 40.909 0.00 0.00 0.00 2.59
972 990 3.243359 AGTGGTTGATGTTTGGTGGAT 57.757 42.857 0.00 0.00 0.00 3.41
973 991 2.746279 AGTGGTTGATGTTTGGTGGA 57.254 45.000 0.00 0.00 0.00 4.02
975 993 2.225491 CGGTAGTGGTTGATGTTTGGTG 59.775 50.000 0.00 0.00 0.00 4.17
976 994 2.158726 ACGGTAGTGGTTGATGTTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
978 996 3.682858 CCTACGGTAGTGGTTGATGTTTG 59.317 47.826 13.76 0.00 0.00 2.93
980 998 2.354403 GCCTACGGTAGTGGTTGATGTT 60.354 50.000 13.76 0.00 0.00 2.71
986 1010 1.411612 GCTATGCCTACGGTAGTGGTT 59.588 52.381 13.76 0.00 0.00 3.67
992 1016 0.673985 CTGCTGCTATGCCTACGGTA 59.326 55.000 0.00 0.00 0.00 4.02
1000 1024 1.489070 CTCTGTCGCTGCTGCTATGC 61.489 60.000 14.03 2.03 36.97 3.14
1001 1025 1.489070 GCTCTGTCGCTGCTGCTATG 61.489 60.000 14.03 0.00 36.97 2.23
1002 1026 1.227205 GCTCTGTCGCTGCTGCTAT 60.227 57.895 14.03 0.00 36.97 2.97
1003 1027 2.182791 GCTCTGTCGCTGCTGCTA 59.817 61.111 14.03 0.00 36.97 3.49
1012 1040 2.243957 TTGGTGTTGCGCTCTGTCG 61.244 57.895 9.73 0.00 0.00 4.35
1094 1122 3.755628 TACACGCAGCGAGGGACC 61.756 66.667 24.65 0.00 0.00 4.46
1095 1123 2.506438 GTACACGCAGCGAGGGAC 60.506 66.667 24.65 16.09 0.00 4.46
1096 1124 3.755628 GGTACACGCAGCGAGGGA 61.756 66.667 24.65 6.96 0.00 4.20
1130 1158 1.616628 GCTTGGGGGAGAGGAGGAA 60.617 63.158 0.00 0.00 0.00 3.36
1131 1159 2.041265 GCTTGGGGGAGAGGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
1132 1160 3.093172 GGCTTGGGGGAGAGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
1133 1161 3.093172 GGGCTTGGGGGAGAGGAG 61.093 72.222 0.00 0.00 0.00 3.69
1165 1193 1.226717 GAGCAGAGCTCGGTTACCG 60.227 63.158 18.78 18.78 45.85 4.02
1222 1251 4.838152 ATGCTACAGGGTGCGGCG 62.838 66.667 0.51 0.51 0.00 6.46
1223 1252 2.897350 GATGCTACAGGGTGCGGC 60.897 66.667 0.00 0.00 0.00 6.53
1225 1254 1.878522 GACGATGCTACAGGGTGCG 60.879 63.158 0.00 0.00 0.00 5.34
1227 1256 1.144057 GGGACGATGCTACAGGGTG 59.856 63.158 0.00 0.00 0.00 4.61
1228 1257 2.064581 GGGGACGATGCTACAGGGT 61.065 63.158 0.00 0.00 0.00 4.34
1229 1258 2.808206 GGGGGACGATGCTACAGGG 61.808 68.421 0.00 0.00 0.00 4.45
1230 1259 1.749334 GAGGGGGACGATGCTACAGG 61.749 65.000 0.00 0.00 0.00 4.00
1231 1260 0.757188 AGAGGGGGACGATGCTACAG 60.757 60.000 0.00 0.00 0.00 2.74
1232 1261 0.755698 GAGAGGGGGACGATGCTACA 60.756 60.000 0.00 0.00 0.00 2.74
1233 1262 1.797211 CGAGAGGGGGACGATGCTAC 61.797 65.000 0.00 0.00 0.00 3.58
1234 1263 1.528542 CGAGAGGGGGACGATGCTA 60.529 63.158 0.00 0.00 0.00 3.49
1235 1264 2.835431 CGAGAGGGGGACGATGCT 60.835 66.667 0.00 0.00 0.00 3.79
1236 1265 3.140225 GACGAGAGGGGGACGATGC 62.140 68.421 0.00 0.00 0.00 3.91
1237 1266 1.448922 GAGACGAGAGGGGGACGATG 61.449 65.000 0.00 0.00 0.00 3.84
1238 1267 1.152922 GAGACGAGAGGGGGACGAT 60.153 63.158 0.00 0.00 0.00 3.73
1239 1268 2.271497 GAGACGAGAGGGGGACGA 59.729 66.667 0.00 0.00 0.00 4.20
1240 1269 2.944409 ATCGAGACGAGAGGGGGACG 62.944 65.000 0.00 0.00 39.91 4.79
1241 1270 0.108207 TATCGAGACGAGAGGGGGAC 59.892 60.000 0.00 0.00 39.91 4.46
1242 1271 0.108207 GTATCGAGACGAGAGGGGGA 59.892 60.000 0.00 0.00 39.91 4.81
1243 1272 0.108963 AGTATCGAGACGAGAGGGGG 59.891 60.000 4.25 0.00 39.91 5.40
1244 1273 1.604755 CAAGTATCGAGACGAGAGGGG 59.395 57.143 4.25 0.00 39.91 4.79
1245 1274 2.562635 TCAAGTATCGAGACGAGAGGG 58.437 52.381 4.25 0.00 39.91 4.30
1246 1275 3.544440 CGTTCAAGTATCGAGACGAGAGG 60.544 52.174 4.25 0.24 39.91 3.69
1247 1276 3.599338 CGTTCAAGTATCGAGACGAGAG 58.401 50.000 4.25 0.00 39.91 3.20
1248 1277 2.222976 GCGTTCAAGTATCGAGACGAGA 60.223 50.000 4.25 4.08 39.91 4.04
1266 1295 0.463654 TTGAGTTGCAGAACTGGCGT 60.464 50.000 0.00 0.00 42.80 5.68
1271 1300 5.841957 ATCTGTTTTTGAGTTGCAGAACT 57.158 34.783 0.00 0.00 45.59 3.01
1285 1314 6.553100 TCCCTAAATGTTGGTCAATCTGTTTT 59.447 34.615 0.00 0.00 0.00 2.43
1312 1341 0.326595 TTGCGGGGCATGTTCTTCTA 59.673 50.000 0.00 0.00 38.76 2.10
1316 1345 0.975887 AAAATTGCGGGGCATGTTCT 59.024 45.000 0.00 0.00 38.76 3.01
1349 1379 8.807948 ATTCCTATTTAAAAGCAGTGCTAGAA 57.192 30.769 20.09 10.02 38.25 2.10
1376 1406 3.915437 ACACCTGAATTAACAAAGGCG 57.085 42.857 0.19 0.00 32.73 5.52
1379 1409 8.977505 CCACAAAATACACCTGAATTAACAAAG 58.022 33.333 0.00 0.00 0.00 2.77
1419 1452 5.294552 GCCTGAAACTCGTTATAATTCTGCT 59.705 40.000 0.00 0.00 0.00 4.24
1421 1454 6.662414 TGCCTGAAACTCGTTATAATTCTG 57.338 37.500 0.00 0.00 0.00 3.02
1423 1456 7.527457 ACTTTGCCTGAAACTCGTTATAATTC 58.473 34.615 0.00 0.00 0.00 2.17
1426 1459 6.664515 CAACTTTGCCTGAAACTCGTTATAA 58.335 36.000 0.00 0.00 0.00 0.98
1459 1492 9.447040 CAAACAATGACATGCTCTAATAAGATG 57.553 33.333 0.00 0.00 0.00 2.90
1462 1495 9.630098 AAACAAACAATGACATGCTCTAATAAG 57.370 29.630 0.00 0.00 0.00 1.73
1463 1496 9.409312 CAAACAAACAATGACATGCTCTAATAA 57.591 29.630 0.00 0.00 0.00 1.40
1464 1497 8.575589 ACAAACAAACAATGACATGCTCTAATA 58.424 29.630 0.00 0.00 0.00 0.98
1465 1498 7.383029 CACAAACAAACAATGACATGCTCTAAT 59.617 33.333 0.00 0.00 0.00 1.73
1480 1513 2.094803 CACCAGAGCACACAAACAAACA 60.095 45.455 0.00 0.00 0.00 2.83
1481 1514 2.529151 CACCAGAGCACACAAACAAAC 58.471 47.619 0.00 0.00 0.00 2.93
1482 1515 1.135141 GCACCAGAGCACACAAACAAA 60.135 47.619 0.00 0.00 0.00 2.83
1483 1516 0.455410 GCACCAGAGCACACAAACAA 59.545 50.000 0.00 0.00 0.00 2.83
1484 1517 0.679321 TGCACCAGAGCACACAAACA 60.679 50.000 0.00 0.00 40.11 2.83
1512 1545 3.702548 TCGTAAGCAGCTAGTTAATGGGA 59.297 43.478 0.00 0.00 37.18 4.37
1519 1552 4.158025 ACATACAGTCGTAAGCAGCTAGTT 59.842 41.667 0.00 0.00 37.18 2.24
1551 1584 3.102097 GCTGGAGCGGCACAATAC 58.898 61.111 1.45 0.00 35.55 1.89
1569 1602 4.429212 CACGGGTCGATCGCCACA 62.429 66.667 23.67 0.80 0.00 4.17
1574 1607 1.358725 AAACATGCACGGGTCGATCG 61.359 55.000 9.36 9.36 0.00 3.69
1589 1625 3.190327 CGCAATGTGATAGGTCCAAAACA 59.810 43.478 0.00 0.00 0.00 2.83
1594 1630 5.738619 ATATACGCAATGTGATAGGTCCA 57.261 39.130 0.00 0.00 0.00 4.02
1651 1687 4.939368 TTGTTCCGTGGGGCGTGG 62.939 66.667 0.00 0.00 39.32 4.94
1653 1689 2.903350 GTTTGTTCCGTGGGGCGT 60.903 61.111 0.00 0.00 39.32 5.68
1817 1853 2.827322 TCCAAAGAACCATCTGGCATTG 59.173 45.455 0.00 0.00 39.32 2.82
1988 2024 8.585881 AGTATGACAGATATTAGTAATTGCGGT 58.414 33.333 0.00 1.05 0.00 5.68
2119 2162 8.225603 AGTGAGGTTCGATTTGCATAAATAAT 57.774 30.769 0.00 0.00 36.66 1.28
2151 2195 0.879765 CTGGCAAGAACCAAGCAGAG 59.120 55.000 0.00 0.00 39.86 3.35
2152 2196 0.183492 ACTGGCAAGAACCAAGCAGA 59.817 50.000 0.00 0.00 39.86 4.26
2191 2235 1.431496 ATTGCTTTGCCGCATCAAAC 58.569 45.000 0.00 0.00 40.04 2.93
2212 2256 1.133356 ACCTCAGCAAGCTTTTCCCTT 60.133 47.619 0.00 0.00 0.00 3.95
2426 2470 8.728337 ATTTTAAATCTTCTCCTTACGGGTAC 57.272 34.615 0.00 0.00 36.25 3.34
2581 2631 5.703876 CAACAAAAGGATAAAGGTGAGCTC 58.296 41.667 6.82 6.82 0.00 4.09
2793 2843 7.957484 CGAAACTCATATTTCACACTTTGGTAG 59.043 37.037 0.00 0.00 38.30 3.18
2930 2980 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2932 2982 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2934 2984 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2936 2986 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2937 2987 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2940 2990 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2941 2991 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2942 2992 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2943 2993 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2944 2994 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2946 2996 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
2947 2997 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
2948 2998 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
2949 2999 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2950 3000 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2964 3014 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
2966 3016 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
2967 3017 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
2968 3018 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2970 3020 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2973 3023 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2975 3025 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2976 3026 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2977 3027 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2978 3028 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2979 3029 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2982 3032 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2984 3034 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2985 3035 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2986 3036 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2987 3037 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2989 3039 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2990 3040 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2991 3041 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2992 3042 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2993 3043 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2994 3044 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2995 3045 4.042435 AGAAATACTCCCTCCGTTCCAAAA 59.958 41.667 0.00 0.00 0.00 2.44
2997 3047 3.178865 AGAAATACTCCCTCCGTTCCAA 58.821 45.455 0.00 0.00 0.00 3.53
2998 3048 2.829023 AGAAATACTCCCTCCGTTCCA 58.171 47.619 0.00 0.00 0.00 3.53
2999 3049 4.405036 ACTTAGAAATACTCCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
3000 3050 5.595257 ACTTAGAAATACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
3001 3051 7.038799 TGTTTACTTAGAAATACTCCCTCCGTT 60.039 37.037 0.00 0.00 0.00 4.44
3003 3053 6.870769 TGTTTACTTAGAAATACTCCCTCCG 58.129 40.000 0.00 0.00 0.00 4.63
3014 3064 9.787435 ACCAACACTGATATGTTTACTTAGAAA 57.213 29.630 0.00 0.00 40.89 2.52
3016 3066 8.590204 TGACCAACACTGATATGTTTACTTAGA 58.410 33.333 0.00 0.00 40.89 2.10
3017 3067 8.656849 GTGACCAACACTGATATGTTTACTTAG 58.343 37.037 0.00 0.00 45.13 2.18
3018 3068 8.542497 GTGACCAACACTGATATGTTTACTTA 57.458 34.615 0.00 0.00 45.13 2.24
3450 3535 4.953579 AGGAACAACTTAAACTGGAAGCAA 59.046 37.500 0.00 0.00 37.60 3.91
3563 3650 7.821595 TTACGTCCATGTAACACAATCTAAG 57.178 36.000 0.00 0.00 29.67 2.18
4185 4294 8.292448 CCCTGTAGATTAAATTGCACACATATC 58.708 37.037 0.00 0.00 0.00 1.63
4248 4357 3.871006 ACCACAGCATCATAATGTGTACG 59.129 43.478 4.10 0.00 42.17 3.67
4279 4389 3.233507 ACATCAACCAGCACCTGAAAAT 58.766 40.909 0.00 0.00 32.44 1.82
4399 4509 1.340889 GAAAGGGCATGCACTGTTTCA 59.659 47.619 26.17 0.00 0.00 2.69
4400 4510 1.615392 AGAAAGGGCATGCACTGTTTC 59.385 47.619 26.17 23.50 0.00 2.78
4495 4605 9.991906 ATCTATTTTGATGCATATTTTGGGAAG 57.008 29.630 0.00 0.00 0.00 3.46
4578 4689 7.490000 TCGGATATTAGAACTCAGAAGGTTTC 58.510 38.462 0.00 0.00 0.00 2.78
4802 4916 4.302455 CACCAGCTTTCTAGATATCGTGG 58.698 47.826 0.00 0.29 0.00 4.94
4805 4919 4.855715 TCCACCAGCTTTCTAGATATCG 57.144 45.455 0.00 0.00 0.00 2.92
5086 5201 6.034898 CGGAATAATCAACAATTCACTTTGGC 59.965 38.462 0.00 0.00 34.44 4.52
5507 5623 0.745486 TCCGCGATGACTCGGTCTTA 60.745 55.000 8.23 0.00 45.15 2.10
5685 5801 7.004555 TCGGCCAAATATACACTGAATATCT 57.995 36.000 2.24 0.00 0.00 1.98
5785 5901 7.390440 TGCATATACCATATACTCCAGCAAAAC 59.610 37.037 0.00 0.00 0.00 2.43
5808 5924 1.005037 CTGTACGTGAAGCCCTGCA 60.005 57.895 0.00 0.00 0.00 4.41
5838 5954 3.426615 ACCAAACACAAGAAGTCCAACA 58.573 40.909 0.00 0.00 0.00 3.33
5844 5960 5.914898 AAGCTTAACCAAACACAAGAAGT 57.085 34.783 0.00 0.00 0.00 3.01
5867 5983 0.538287 GACCCAGAAGTTGGCAGCTT 60.538 55.000 16.84 16.84 46.32 3.74
5946 6070 3.738982 TGATGTGTTCGTCTTGGTGATT 58.261 40.909 0.00 0.00 0.00 2.57
5975 6099 2.683867 ACATGTCTGTCTACGCCTCTAC 59.316 50.000 0.00 0.00 0.00 2.59
5989 6113 4.406648 TTCAATATCCGCAGACATGTCT 57.593 40.909 22.89 22.89 41.37 3.41
5998 6122 1.073763 CTCCCCCATTCAATATCCGCA 59.926 52.381 0.00 0.00 0.00 5.69
6000 6124 1.614317 GGCTCCCCCATTCAATATCCG 60.614 57.143 0.00 0.00 0.00 4.18
6007 6131 0.698886 ATAGCTGGCTCCCCCATTCA 60.699 55.000 0.00 0.00 44.33 2.57
6009 6133 1.430369 GGATAGCTGGCTCCCCCATT 61.430 60.000 0.00 0.00 44.33 3.16
6014 6138 1.149401 GGTTGGATAGCTGGCTCCC 59.851 63.158 0.00 2.89 0.00 4.30
6019 6143 1.202463 CGACTCTGGTTGGATAGCTGG 60.202 57.143 0.00 0.00 0.00 4.85
6021 6145 0.461961 GCGACTCTGGTTGGATAGCT 59.538 55.000 0.00 0.00 0.00 3.32
6024 6148 1.271856 TTGGCGACTCTGGTTGGATA 58.728 50.000 0.00 0.00 0.00 2.59
6054 6178 1.915078 AATGGAGAAGGCCGGACCAG 61.915 60.000 1.76 0.00 43.14 4.00
6060 6184 1.402968 CATGTCAAATGGAGAAGGCCG 59.597 52.381 0.00 0.00 0.00 6.13
6062 6186 1.820519 TGCATGTCAAATGGAGAAGGC 59.179 47.619 0.00 0.00 0.00 4.35
6066 6190 8.873186 ATTGATATATGCATGTCAAATGGAGA 57.127 30.769 20.47 4.59 43.06 3.71
6069 6193 8.741841 TGGTATTGATATATGCATGTCAAATGG 58.258 33.333 20.47 0.00 43.06 3.16
6163 6288 4.785914 TGGGATCAGTTGGAGGTAAATACA 59.214 41.667 0.00 0.00 0.00 2.29
6241 6366 2.969821 AGGGTGAAGTATTTGCCACA 57.030 45.000 0.00 0.00 0.00 4.17
6323 6448 5.128033 TGGATTAGGATTCTGATTTGGCA 57.872 39.130 0.00 0.00 0.00 4.92
6334 6459 7.835682 TGTTCATGAAGATGTTGGATTAGGATT 59.164 33.333 8.80 0.00 0.00 3.01
6436 6561 4.422840 GACGAAGAGGTTTAGCTAGTTCC 58.577 47.826 0.00 0.00 0.00 3.62
6584 6713 4.035675 GGCGAAGAAGGTGATTAGGAATTG 59.964 45.833 0.00 0.00 0.00 2.32
6586 6715 3.741388 CGGCGAAGAAGGTGATTAGGAAT 60.741 47.826 0.00 0.00 0.00 3.01
6608 6737 0.600057 CACAAGAAGGGCTTTGCTCC 59.400 55.000 0.00 0.00 33.60 4.70
6615 6744 1.692411 GTTCCAACACAAGAAGGGCT 58.308 50.000 0.00 0.00 0.00 5.19
6677 6806 4.365723 CTGCCACTATTGCCAATTTCATC 58.634 43.478 0.00 0.00 0.00 2.92
6701 6830 7.421599 TGAAGTTGAATGAGCAAATTAAACGA 58.578 30.769 0.00 0.00 36.41 3.85
6703 6832 8.650714 GGATGAAGTTGAATGAGCAAATTAAAC 58.349 33.333 4.24 4.24 36.35 2.01
6707 6836 6.349243 TGGATGAAGTTGAATGAGCAAATT 57.651 33.333 0.00 0.00 38.58 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.