Multiple sequence alignment - TraesCS3D01G300200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G300200 chr3D 100.000 4753 0 0 1 4753 414916772 414912020 0.000000e+00 8778.0
1 TraesCS3D01G300200 chr3D 94.340 159 9 0 1762 1920 414914851 414914693 1.320000e-60 244.0
2 TraesCS3D01G300200 chr3D 94.340 159 9 0 1922 2080 414915011 414914853 1.320000e-60 244.0
3 TraesCS3D01G300200 chr3D 92.529 174 8 3 4332 4502 528190520 528190691 1.320000e-60 244.0
4 TraesCS3D01G300200 chr3A 95.872 2592 83 12 1762 4336 535217433 535220017 0.000000e+00 4172.0
5 TraesCS3D01G300200 chr3A 89.068 1610 111 21 497 2080 535216021 535217591 0.000000e+00 1938.0
6 TraesCS3D01G300200 chr3A 91.636 275 13 2 4489 4753 535220012 535220286 5.810000e-99 372.0
7 TraesCS3D01G300200 chr3A 95.625 160 7 0 1762 1921 535217593 535217752 1.700000e-64 257.0
8 TraesCS3D01G300200 chr3A 92.453 159 12 0 1922 2080 535217273 535217431 1.330000e-55 228.0
9 TraesCS3D01G300200 chr3A 89.552 67 7 0 302 368 712198668 712198602 8.470000e-13 86.1
10 TraesCS3D01G300200 chr3B 96.814 2417 54 14 1934 4336 540760889 540758482 0.000000e+00 4015.0
11 TraesCS3D01G300200 chr3B 91.748 1442 67 19 510 1920 540762163 540760743 0.000000e+00 1956.0
12 TraesCS3D01G300200 chr3B 90.833 720 44 8 1 705 540763150 540762438 0.000000e+00 944.0
13 TraesCS3D01G300200 chr3B 93.727 271 8 1 4492 4753 540758483 540758213 9.580000e-107 398.0
14 TraesCS3D01G300200 chr3B 94.512 164 6 1 4333 4493 79116949 79117112 2.840000e-62 250.0
15 TraesCS3D01G300200 chr2A 93.567 171 8 1 4335 4502 189020998 189020828 7.900000e-63 252.0
16 TraesCS3D01G300200 chr2A 94.012 167 7 1 4333 4496 722495121 722494955 2.840000e-62 250.0
17 TraesCS3D01G300200 chr6D 93.976 166 7 1 4331 4493 204160183 204160018 1.020000e-61 248.0
18 TraesCS3D01G300200 chr5D 93.491 169 8 1 4331 4496 151671544 151671712 1.020000e-61 248.0
19 TraesCS3D01G300200 chr5D 86.139 101 12 2 270 369 282006992 282007091 1.810000e-19 108.0
20 TraesCS3D01G300200 chr5D 86.420 81 11 0 289 369 527501708 527501788 6.550000e-14 89.8
21 TraesCS3D01G300200 chr4A 92.135 178 11 1 4335 4509 729701870 729702047 1.020000e-61 248.0
22 TraesCS3D01G300200 chr2B 93.452 168 8 1 4330 4494 134256685 134256852 3.670000e-61 246.0
23 TraesCS3D01G300200 chr2B 88.462 78 9 0 292 369 547540471 547540394 1.410000e-15 95.3
24 TraesCS3D01G300200 chr1A 93.413 167 7 3 4331 4493 580665926 580666092 1.320000e-60 244.0
25 TraesCS3D01G300200 chr5B 89.024 82 7 2 289 369 664025290 664025370 3.030000e-17 100.0
26 TraesCS3D01G300200 chr5B 86.905 84 9 2 287 369 316708821 316708903 5.060000e-15 93.5
27 TraesCS3D01G300200 chr5B 89.706 68 7 0 302 369 681034979 681035046 2.360000e-13 87.9
28 TraesCS3D01G300200 chr6B 89.041 73 8 0 292 364 489438641 489438569 1.820000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G300200 chr3D 414912020 414916772 4752 True 3088.666667 8778 96.226667 1 4753 3 chr3D.!!$R1 4752
1 TraesCS3D01G300200 chr3A 535216021 535220286 4265 False 1393.400000 4172 92.930800 497 4753 5 chr3A.!!$F1 4256
2 TraesCS3D01G300200 chr3B 540758213 540763150 4937 True 1828.250000 4015 93.280500 1 4753 4 chr3B.!!$R1 4752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.032117 ATCGACAGGAGGATGGACCA 60.032 55.000 0.0 0.0 42.04 4.02 F
279 280 0.108138 GGCGAGACTACCAACTGCAT 60.108 55.000 0.0 0.0 0.00 3.96 F
1016 1507 1.710809 AGCCATGGAGTTTAAGGTGGT 59.289 47.619 18.4 0.0 0.00 4.16 F
1017 1508 1.818674 GCCATGGAGTTTAAGGTGGTG 59.181 52.381 18.4 0.0 0.00 4.17 F
1531 2026 2.224209 ACCACTAACTTCTTGTCGGTGG 60.224 50.000 0.0 0.0 46.61 4.61 F
3075 3749 1.040646 ACTGCTGGTCTTTGAGTCGA 58.959 50.000 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 1821 1.512926 AACAGCGCAACCAGACTTAG 58.487 50.000 11.47 0.0 0.00 2.18 R
1809 2465 1.940613 ACGTTTGCAGAAAGTCTCACC 59.059 47.619 0.00 0.0 0.00 4.02 R
2322 2983 3.258872 CCATGAATTCAACCAAAGAGCCA 59.741 43.478 13.09 0.0 0.00 4.75 R
2981 3654 4.400567 CCAGAATTTCCATCACTTCCTTCC 59.599 45.833 0.00 0.0 0.00 3.46 R
3149 3823 4.444536 ACAGCACAAAATCTTGCAAACAT 58.555 34.783 0.00 0.0 41.48 2.71 R
4376 5058 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.380650 GAGAAGGGGAGAGGCGAGT 60.381 63.158 0.00 0.00 0.00 4.18
59 60 1.671901 GAGAAGGGGAGAGGCGAGTG 61.672 65.000 0.00 0.00 0.00 3.51
73 74 1.127582 GCGAGTGAAAGAGATGTGTGC 59.872 52.381 0.00 0.00 0.00 4.57
142 143 3.398694 CGTAGGATCGACAGGAGGA 57.601 57.895 0.00 0.00 0.00 3.71
148 149 0.676736 GATCGACAGGAGGATGGACC 59.323 60.000 0.00 0.00 39.35 4.46
149 150 0.032117 ATCGACAGGAGGATGGACCA 60.032 55.000 0.00 0.00 42.04 4.02
157 158 1.888436 GAGGATGGACCAGCACACGA 61.888 60.000 12.67 0.00 42.04 4.35
158 159 1.221840 GGATGGACCAGCACACGAT 59.778 57.895 12.67 0.00 38.79 3.73
181 182 6.222038 TGTGGAATACATAAGACAGGAGAC 57.778 41.667 0.00 0.00 33.42 3.36
184 185 4.583489 GGAATACATAAGACAGGAGACGGA 59.417 45.833 0.00 0.00 0.00 4.69
207 208 1.515081 TCGGTTTTTAGCCTTGACGG 58.485 50.000 0.00 0.00 0.00 4.79
211 212 2.624364 GGTTTTTAGCCTTGACGGGAAA 59.376 45.455 0.00 0.00 0.00 3.13
279 280 0.108138 GGCGAGACTACCAACTGCAT 60.108 55.000 0.00 0.00 0.00 3.96
334 335 8.277490 AGTTGTCGTTGAACTAGATGTATCTA 57.723 34.615 0.00 1.95 38.32 1.98
371 372 6.585416 TGCTAGATACATTCATTTGAGCAGA 58.415 36.000 0.00 0.00 32.75 4.26
491 493 6.396829 AAATGAGAACCTTTTTCCTGTCAG 57.603 37.500 0.00 0.00 0.00 3.51
492 494 4.771114 TGAGAACCTTTTTCCTGTCAGA 57.229 40.909 0.00 0.00 0.00 3.27
493 495 4.451900 TGAGAACCTTTTTCCTGTCAGAC 58.548 43.478 0.00 0.00 0.00 3.51
529 544 3.431725 CCTCGCCTCGGCCAAAAC 61.432 66.667 2.24 0.00 37.98 2.43
727 1200 3.000819 CGCCACCCACCTCCACTA 61.001 66.667 0.00 0.00 0.00 2.74
735 1208 3.568430 CACCCACCTCCACTAAAAACTTC 59.432 47.826 0.00 0.00 0.00 3.01
736 1209 3.462205 ACCCACCTCCACTAAAAACTTCT 59.538 43.478 0.00 0.00 0.00 2.85
737 1210 4.079385 ACCCACCTCCACTAAAAACTTCTT 60.079 41.667 0.00 0.00 0.00 2.52
739 1212 5.705905 CCCACCTCCACTAAAAACTTCTTAG 59.294 44.000 0.00 0.00 33.41 2.18
740 1213 5.705905 CCACCTCCACTAAAAACTTCTTAGG 59.294 44.000 0.00 0.00 31.76 2.69
741 1214 6.465321 CCACCTCCACTAAAAACTTCTTAGGA 60.465 42.308 0.00 0.00 31.76 2.94
742 1215 7.168905 CACCTCCACTAAAAACTTCTTAGGAT 58.831 38.462 0.00 0.00 31.76 3.24
1016 1507 1.710809 AGCCATGGAGTTTAAGGTGGT 59.289 47.619 18.40 0.00 0.00 4.16
1017 1508 1.818674 GCCATGGAGTTTAAGGTGGTG 59.181 52.381 18.40 0.00 0.00 4.17
1024 1515 3.243975 GGAGTTTAAGGTGGTGTCGAAGA 60.244 47.826 0.00 0.00 0.00 2.87
1237 1728 5.545658 TCTTTTGCTTTGCTTACGGATAG 57.454 39.130 0.00 0.00 0.00 2.08
1468 1963 5.105752 AGTTTGACTCGTGATCTCAATAGC 58.894 41.667 0.00 0.00 0.00 2.97
1472 1967 5.664457 TGACTCGTGATCTCAATAGCAAAT 58.336 37.500 0.00 0.00 0.00 2.32
1515 2010 3.118408 TGTGTCTTCTGCTTACAACCACT 60.118 43.478 0.00 0.00 0.00 4.00
1531 2026 2.224209 ACCACTAACTTCTTGTCGGTGG 60.224 50.000 0.00 0.00 46.61 4.61
1578 2074 3.055385 TGTGACCTGGATTGTAGCCTTAC 60.055 47.826 0.00 0.00 0.00 2.34
1582 2078 2.771943 CCTGGATTGTAGCCTTACAGGA 59.228 50.000 0.00 0.00 45.14 3.86
1600 2096 5.469479 ACAGGAGTTGTGTTTGTTCTTTTG 58.531 37.500 0.00 0.00 38.99 2.44
1827 2483 2.682856 TGTGGTGAGACTTTCTGCAAAC 59.317 45.455 0.00 0.00 0.00 2.93
1830 2486 2.286418 GGTGAGACTTTCTGCAAACGTG 60.286 50.000 0.00 0.00 0.00 4.49
1880 2536 8.737175 AGCATTGAATTATAGCACTATGAATGG 58.263 33.333 0.30 0.00 0.00 3.16
1895 2551 7.012704 CACTATGAATGGATTAACCTGGTTCTG 59.987 40.741 16.75 0.00 39.86 3.02
1938 2594 5.366768 TCTGATAACTAAGGCCTGCTTGTAT 59.633 40.000 5.69 0.45 0.00 2.29
2062 2718 5.119694 GGATTGACCTGGTTCTGATAACTC 58.880 45.833 0.00 0.00 35.41 3.01
2126 2785 9.461312 TTTGTTATACTGCAAGGAACTGATAAT 57.539 29.630 0.00 0.00 40.86 1.28
2296 2957 6.898912 ACAATGCTGATACATATGATAGCG 57.101 37.500 10.38 4.07 34.07 4.26
2560 3221 5.596845 ACGGTAATGCACATTTCAAGTTTT 58.403 33.333 0.47 0.00 32.50 2.43
2591 3262 4.810191 CCCTTGTAGGCCTGTAGATATC 57.190 50.000 17.99 0.00 32.73 1.63
2748 3420 8.675504 CATTTCAGTTTCATTAGAAGCTCTGAT 58.324 33.333 0.00 0.00 42.49 2.90
2981 3654 4.278975 AGTTCTTCCAAGGCTAGTGAAG 57.721 45.455 12.05 12.05 36.42 3.02
3075 3749 1.040646 ACTGCTGGTCTTTGAGTCGA 58.959 50.000 0.00 0.00 0.00 4.20
3143 3817 5.689383 TCACTGAAAATAAGCCTTGTCAC 57.311 39.130 0.00 0.00 0.00 3.67
3149 3823 6.065374 TGAAAATAAGCCTTGTCACTACCAA 58.935 36.000 0.00 0.00 0.00 3.67
3173 3847 3.797451 TTGCAAGATTTTGTGCTGTCA 57.203 38.095 0.00 0.00 41.48 3.58
3557 4235 0.037303 TCCTCACCTACGAGACGGTT 59.963 55.000 0.00 0.00 34.79 4.44
3687 4365 1.154016 CTGGTCGCTGGACTGTACG 60.154 63.158 0.00 0.00 42.97 3.67
4338 5020 4.028993 TGGAACACCCTCCAAAATACTC 57.971 45.455 0.00 0.00 42.69 2.59
4339 5021 3.245122 TGGAACACCCTCCAAAATACTCC 60.245 47.826 0.00 0.00 42.69 3.85
4340 5022 3.353557 GAACACCCTCCAAAATACTCCC 58.646 50.000 0.00 0.00 0.00 4.30
4341 5023 2.644151 ACACCCTCCAAAATACTCCCT 58.356 47.619 0.00 0.00 0.00 4.20
4342 5024 2.576648 ACACCCTCCAAAATACTCCCTC 59.423 50.000 0.00 0.00 0.00 4.30
4343 5025 2.092375 CACCCTCCAAAATACTCCCTCC 60.092 54.545 0.00 0.00 0.00 4.30
4344 5026 1.141053 CCCTCCAAAATACTCCCTCCG 59.859 57.143 0.00 0.00 0.00 4.63
4345 5027 1.838077 CCTCCAAAATACTCCCTCCGT 59.162 52.381 0.00 0.00 0.00 4.69
4346 5028 2.238898 CCTCCAAAATACTCCCTCCGTT 59.761 50.000 0.00 0.00 0.00 4.44
4347 5029 3.532542 CTCCAAAATACTCCCTCCGTTC 58.467 50.000 0.00 0.00 0.00 3.95
4348 5030 2.237893 TCCAAAATACTCCCTCCGTTCC 59.762 50.000 0.00 0.00 0.00 3.62
4349 5031 2.238898 CCAAAATACTCCCTCCGTTCCT 59.761 50.000 0.00 0.00 0.00 3.36
4350 5032 3.453353 CCAAAATACTCCCTCCGTTCCTA 59.547 47.826 0.00 0.00 0.00 2.94
4351 5033 4.080751 CCAAAATACTCCCTCCGTTCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
4352 5034 5.493809 CAAAATACTCCCTCCGTTCCTAAA 58.506 41.667 0.00 0.00 0.00 1.85
4353 5035 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
4354 5036 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
4355 5037 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4356 5038 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4357 5039 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4358 5040 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4359 5041 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4360 5042 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4361 5043 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4362 5044 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4363 5045 6.127253 CCCTCCGTTCCTAAATGTAAGTCTTA 60.127 42.308 0.00 0.00 0.00 2.10
4364 5046 6.979238 CCTCCGTTCCTAAATGTAAGTCTTAG 59.021 42.308 0.00 0.00 0.00 2.18
4365 5047 7.147949 CCTCCGTTCCTAAATGTAAGTCTTAGA 60.148 40.741 0.00 0.00 0.00 2.10
4366 5048 7.769220 TCCGTTCCTAAATGTAAGTCTTAGAG 58.231 38.462 0.00 0.00 0.00 2.43
4367 5049 7.613022 TCCGTTCCTAAATGTAAGTCTTAGAGA 59.387 37.037 0.00 0.00 0.00 3.10
4368 5050 8.414778 CCGTTCCTAAATGTAAGTCTTAGAGAT 58.585 37.037 0.00 0.00 0.00 2.75
4369 5051 9.804758 CGTTCCTAAATGTAAGTCTTAGAGATT 57.195 33.333 0.00 0.00 0.00 2.40
4379 5061 9.475620 TGTAAGTCTTAGAGATTTCACTATGGA 57.524 33.333 0.00 0.00 0.00 3.41
4380 5062 9.738832 GTAAGTCTTAGAGATTTCACTATGGAC 57.261 37.037 0.00 0.00 0.00 4.02
4381 5063 7.354751 AGTCTTAGAGATTTCACTATGGACC 57.645 40.000 11.24 0.00 30.71 4.46
4382 5064 6.897966 AGTCTTAGAGATTTCACTATGGACCA 59.102 38.462 0.00 0.00 30.71 4.02
4383 5065 6.981559 GTCTTAGAGATTTCACTATGGACCAC 59.018 42.308 0.00 0.00 0.00 4.16
4384 5066 6.667848 TCTTAGAGATTTCACTATGGACCACA 59.332 38.462 0.00 0.00 0.00 4.17
4385 5067 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
4386 5068 8.547481 TTAGAGATTTCACTATGGACCACATA 57.453 34.615 0.00 0.00 41.03 2.29
4387 5069 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
4388 5070 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
4389 5071 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
4390 5072 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
4391 5073 2.956333 TCACTATGGACCACATACGGAG 59.044 50.000 0.00 0.00 41.03 4.63
4392 5074 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
4393 5075 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
4394 5076 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
4395 5077 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
4396 5078 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
4397 5079 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
4398 5080 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
4399 5081 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
4400 5082 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
4401 5083 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
4402 5084 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
4403 5085 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
4404 5086 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
4405 5087 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4406 5088 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4407 5089 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4408 5090 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4409 5091 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
4410 5092 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
4411 5093 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
4412 5094 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
4413 5095 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
4414 5096 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
4415 5097 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
4444 5126 7.956328 ACATCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4445 5127 7.997482 ACATCTATATACATCCGTATGTGGTC 58.003 38.462 3.56 0.00 45.99 4.02
4446 5128 7.068348 ACATCTATATACATCCGTATGTGGTCC 59.932 40.741 3.56 0.00 45.99 4.46
4447 5129 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
4448 5130 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
4449 5131 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
4450 5132 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
4451 5133 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
4452 5134 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
4453 5135 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
4454 5136 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
4455 5137 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
4456 5138 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
4457 5139 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
4458 5140 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
4459 5141 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
4460 5142 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
4461 5143 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
4462 5144 6.222038 TGTGGTCCATAGTGAAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
4463 5145 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
4464 5146 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
4465 5147 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
4466 5148 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
4467 5149 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
4468 5150 8.207545 GGTCCATAGTGAAATCTCTACAAAGAT 58.792 37.037 0.00 0.00 37.61 2.40
4469 5151 9.606631 GTCCATAGTGAAATCTCTACAAAGATT 57.393 33.333 0.00 0.00 45.67 2.40
4487 5169 9.338622 ACAAAGATTTATATTTAGGAACGGAGG 57.661 33.333 0.00 0.00 0.00 4.30
4488 5170 9.555727 CAAAGATTTATATTTAGGAACGGAGGA 57.444 33.333 0.00 0.00 0.00 3.71
4490 5172 9.780186 AAGATTTATATTTAGGAACGGAGGAAG 57.220 33.333 0.00 0.00 0.00 3.46
4622 5313 6.521162 TCTGTTCTTTTAAGGGAATTTTGGC 58.479 36.000 0.00 0.00 0.00 4.52
4638 5329 7.254084 GGAATTTTGGCGAATATGCTAGTTTTG 60.254 37.037 0.00 0.00 34.52 2.44
4697 5388 1.823169 ATACGCCCACACACGGAACT 61.823 55.000 0.00 0.00 0.00 3.01
4699 5390 2.978010 GCCCACACACGGAACTGG 60.978 66.667 0.00 0.00 0.00 4.00
4711 5402 0.955919 GGAACTGGCCAGAAAGACCG 60.956 60.000 39.19 11.60 0.00 4.79
4749 5440 1.069973 GCAGAATTTTGCGCAAAACCC 60.070 47.619 41.38 33.71 42.32 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.734253 CACTCTCCTTCTTGCGTCGG 60.734 60.000 0.00 0.00 0.00 4.79
14 15 0.605589 CTCCACTCTCCTTCTTGCGT 59.394 55.000 0.00 0.00 0.00 5.24
58 59 2.299013 ACCTACGCACACATCTCTTTCA 59.701 45.455 0.00 0.00 0.00 2.69
59 60 2.924290 GACCTACGCACACATCTCTTTC 59.076 50.000 0.00 0.00 0.00 2.62
73 74 4.421948 GTCCAACACATAGAAGACCTACG 58.578 47.826 0.00 0.00 0.00 3.51
132 133 1.819229 CTGGTCCATCCTCCTGTCG 59.181 63.158 0.00 0.00 37.07 4.35
142 143 0.674581 CACATCGTGTGCTGGTCCAT 60.675 55.000 0.00 0.00 41.89 3.41
148 149 2.345876 TGTATTCCACATCGTGTGCTG 58.654 47.619 11.23 1.90 46.51 4.41
149 150 2.760634 TGTATTCCACATCGTGTGCT 57.239 45.000 11.23 3.37 46.51 4.40
158 159 5.163550 CGTCTCCTGTCTTATGTATTCCACA 60.164 44.000 0.00 0.00 42.69 4.17
168 169 3.066900 CGATGTTCCGTCTCCTGTCTTAT 59.933 47.826 0.00 0.00 0.00 1.73
181 182 2.081462 AGGCTAAAAACCGATGTTCCG 58.919 47.619 0.00 0.00 32.15 4.30
184 185 3.058501 CGTCAAGGCTAAAAACCGATGTT 60.059 43.478 0.00 0.00 35.82 2.71
211 212 1.485066 ACATCGCCCGACCTAGATTTT 59.515 47.619 0.00 0.00 0.00 1.82
215 216 2.125326 CCACATCGCCCGACCTAGA 61.125 63.158 0.00 0.00 0.00 2.43
216 217 2.417516 CCACATCGCCCGACCTAG 59.582 66.667 0.00 0.00 0.00 3.02
217 218 3.151710 CCCACATCGCCCGACCTA 61.152 66.667 0.00 0.00 0.00 3.08
219 220 4.530857 CTCCCACATCGCCCGACC 62.531 72.222 0.00 0.00 0.00 4.79
220 221 4.530857 CCTCCCACATCGCCCGAC 62.531 72.222 0.00 0.00 0.00 4.79
222 223 4.838152 CACCTCCCACATCGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
223 224 3.391665 CTCACCTCCCACATCGCCC 62.392 68.421 0.00 0.00 0.00 6.13
279 280 4.811969 TTCGAGGGAGCACTATTTACAA 57.188 40.909 0.00 0.00 0.00 2.41
334 335 9.197694 GAATGTATCTAGCATTGAAATACGTCT 57.802 33.333 0.00 0.00 36.77 4.18
346 347 7.222161 TCTGCTCAAATGAATGTATCTAGCAT 58.778 34.615 0.00 0.00 36.90 3.79
371 372 4.695217 ATTTGATTGTCACGCCGTTTAT 57.305 36.364 0.00 0.00 0.00 1.40
423 425 9.952030 TTACTCCTACATTGACATTGAATGTTA 57.048 29.630 12.62 5.39 45.03 2.41
473 475 4.200092 GTGTCTGACAGGAAAAAGGTTCT 58.800 43.478 11.41 0.00 0.00 3.01
488 490 2.863346 CGGGGTTGGTCGTGTCTGA 61.863 63.158 0.00 0.00 0.00 3.27
529 544 4.576330 ATTGAGAAGGGGTAGTCCAAAG 57.424 45.455 0.00 0.00 37.22 2.77
567 584 9.671279 AATAAACATTGTACATGTCTGATGAGA 57.329 29.630 17.20 6.60 0.00 3.27
574 591 5.645929 TCGCCAATAAACATTGTACATGTCT 59.354 36.000 0.00 0.00 0.00 3.41
669 1055 2.288825 ACATTGTACGTGTCTGGTGAGG 60.289 50.000 0.00 0.00 0.00 3.86
723 1196 7.661847 AGTGGTCATCCTAAGAAGTTTTTAGTG 59.338 37.037 11.16 5.35 34.23 2.74
726 1199 8.215050 TGAAGTGGTCATCCTAAGAAGTTTTTA 58.785 33.333 0.00 0.00 34.23 1.52
727 1200 7.060421 TGAAGTGGTCATCCTAAGAAGTTTTT 58.940 34.615 0.00 0.00 34.23 1.94
735 1208 5.046304 TCCTCTTTGAAGTGGTCATCCTAAG 60.046 44.000 10.62 0.00 39.91 2.18
736 1209 4.844085 TCCTCTTTGAAGTGGTCATCCTAA 59.156 41.667 10.62 0.00 39.91 2.69
737 1210 4.425772 TCCTCTTTGAAGTGGTCATCCTA 58.574 43.478 10.62 0.00 39.91 2.94
739 1212 3.703001 TCCTCTTTGAAGTGGTCATCC 57.297 47.619 10.62 0.00 39.91 3.51
740 1213 3.753797 GGTTCCTCTTTGAAGTGGTCATC 59.246 47.826 10.62 0.00 39.91 2.92
741 1214 3.498661 GGGTTCCTCTTTGAAGTGGTCAT 60.499 47.826 10.62 0.00 39.91 3.06
742 1215 2.158667 GGGTTCCTCTTTGAAGTGGTCA 60.159 50.000 10.62 0.00 39.91 4.02
906 1391 2.044946 CGGGCTGGAAGGAAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
996 1487 1.710809 ACCACCTTAAACTCCATGGCT 59.289 47.619 6.96 0.00 0.00 4.75
1237 1728 2.028876 CCCCCAATACGAAAACATCCC 58.971 52.381 0.00 0.00 0.00 3.85
1325 1816 4.081862 ACAGCGCAACCAGACTTAGTATTA 60.082 41.667 11.47 0.00 0.00 0.98
1330 1821 1.512926 AACAGCGCAACCAGACTTAG 58.487 50.000 11.47 0.00 0.00 2.18
1370 1861 6.982141 AGCAACGATGGACTTATATTTCGTAA 59.018 34.615 0.00 0.00 38.72 3.18
1497 1992 5.546621 AGTTAGTGGTTGTAAGCAGAAGA 57.453 39.130 0.00 0.00 37.04 2.87
1515 2010 3.640029 ACTCTTCCACCGACAAGAAGTTA 59.360 43.478 0.00 0.00 38.50 2.24
1531 2026 7.347508 TGCTATGTTTCGAAGTTAACTCTTC 57.652 36.000 8.95 2.81 40.01 2.87
1578 2074 5.345741 CACAAAAGAACAAACACAACTCCTG 59.654 40.000 0.00 0.00 0.00 3.86
1582 2078 6.084326 AGACACAAAAGAACAAACACAACT 57.916 33.333 0.00 0.00 0.00 3.16
1809 2465 1.940613 ACGTTTGCAGAAAGTCTCACC 59.059 47.619 0.00 0.00 0.00 4.02
1880 2536 8.451748 GTCAAAGTTATCAGAACCAGGTTAATC 58.548 37.037 4.25 0.00 0.00 1.75
1938 2594 6.220213 AGGTGAGCCTTAGTCACTAAGACAA 61.220 44.000 24.00 4.40 46.06 3.18
2044 2700 4.464597 AGTCAGAGTTATCAGAACCAGGTC 59.535 45.833 0.00 0.00 0.00 3.85
2062 2718 6.310956 GCAGAAGCATCATAGCTATAAGTCAG 59.689 42.308 5.77 0.00 45.89 3.51
2128 2787 8.743714 CCTAGAAGAAGTGCCATTAAGAAAAAT 58.256 33.333 0.00 0.00 0.00 1.82
2129 2788 7.176690 CCCTAGAAGAAGTGCCATTAAGAAAAA 59.823 37.037 0.00 0.00 0.00 1.94
2203 2864 5.923733 AGTCTAATCAACGAGGTTCTGAT 57.076 39.130 0.00 0.00 0.00 2.90
2322 2983 3.258872 CCATGAATTCAACCAAAGAGCCA 59.741 43.478 13.09 0.00 0.00 4.75
2570 3231 4.421131 AGATATCTACAGGCCTACAAGGG 58.579 47.826 3.98 0.00 35.37 3.95
2591 3262 7.710475 ACCATGTTTTCCTACATTGACAAAAAG 59.290 33.333 0.00 0.00 36.64 2.27
2748 3420 4.860802 TTTTCAGGCTCCAGATGGATAA 57.139 40.909 1.15 0.00 44.46 1.75
2981 3654 4.400567 CCAGAATTTCCATCACTTCCTTCC 59.599 45.833 0.00 0.00 0.00 3.46
3143 3817 6.564499 GCACAAAATCTTGCAAACATTGGTAG 60.564 38.462 0.00 1.06 38.68 3.18
3149 3823 4.444536 ACAGCACAAAATCTTGCAAACAT 58.555 34.783 0.00 0.00 41.48 2.71
3184 3858 9.149225 CAGCTTAGTCATATGGAAATGAGATAC 57.851 37.037 2.13 0.00 36.57 2.24
3188 3863 6.649973 CCTCAGCTTAGTCATATGGAAATGAG 59.350 42.308 2.13 10.31 36.57 2.90
3557 4235 1.079197 ATGTTCGATGGCACGCTCA 60.079 52.632 0.00 0.00 0.00 4.26
3844 4523 5.887598 TCCAAGTTGAGTCCCAATATGAATG 59.112 40.000 3.87 0.00 37.08 2.67
4125 4807 9.362539 AGAACATGTTATGCTGAATTTGATTTC 57.637 29.630 11.95 0.00 0.00 2.17
4216 4898 1.626321 TCCGTAAAACCTCCATGCTCA 59.374 47.619 0.00 0.00 0.00 4.26
4306 4988 1.215423 GGGTGTTCCATATGCCTCCTT 59.785 52.381 0.00 0.00 35.00 3.36
4307 4989 0.846693 GGGTGTTCCATATGCCTCCT 59.153 55.000 0.00 0.00 35.00 3.69
4308 4990 0.846693 AGGGTGTTCCATATGCCTCC 59.153 55.000 0.00 0.00 38.24 4.30
4334 5016 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
4335 5017 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
4336 5018 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4337 5019 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4338 5020 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4339 5021 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4340 5022 7.769220 TCTAAGACTTACATTTAGGAACGGAG 58.231 38.462 0.00 0.00 0.00 4.63
4341 5023 7.613022 TCTCTAAGACTTACATTTAGGAACGGA 59.387 37.037 0.00 0.00 0.00 4.69
4342 5024 7.769220 TCTCTAAGACTTACATTTAGGAACGG 58.231 38.462 0.00 0.00 0.00 4.44
4343 5025 9.804758 AATCTCTAAGACTTACATTTAGGAACG 57.195 33.333 0.00 0.00 0.00 3.95
4353 5035 9.475620 TCCATAGTGAAATCTCTAAGACTTACA 57.524 33.333 0.00 0.00 0.00 2.41
4354 5036 9.738832 GTCCATAGTGAAATCTCTAAGACTTAC 57.261 37.037 13.37 0.00 32.52 2.34
4355 5037 8.915036 GGTCCATAGTGAAATCTCTAAGACTTA 58.085 37.037 16.84 0.00 33.96 2.24
4356 5038 7.400339 TGGTCCATAGTGAAATCTCTAAGACTT 59.600 37.037 16.84 0.00 33.96 3.01
4357 5039 6.897966 TGGTCCATAGTGAAATCTCTAAGACT 59.102 38.462 16.84 0.00 33.96 3.24
4358 5040 6.981559 GTGGTCCATAGTGAAATCTCTAAGAC 59.018 42.308 0.00 12.77 33.40 3.01
4359 5041 6.667848 TGTGGTCCATAGTGAAATCTCTAAGA 59.332 38.462 0.00 0.00 0.00 2.10
4360 5042 6.878317 TGTGGTCCATAGTGAAATCTCTAAG 58.122 40.000 0.00 0.00 0.00 2.18
4361 5043 6.867519 TGTGGTCCATAGTGAAATCTCTAA 57.132 37.500 0.00 0.00 0.00 2.10
4362 5044 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
4363 5045 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
4364 5046 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
4365 5047 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
4366 5048 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
4367 5049 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
4368 5050 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
4369 5051 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
4370 5052 2.956333 CTCCGTATGTGGTCCATAGTGA 59.044 50.000 0.00 0.00 36.71 3.41
4371 5053 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
4372 5054 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
4373 5055 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
4374 5056 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
4375 5057 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
4376 5058 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
4377 5059 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
4378 5060 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
4379 5061 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
4380 5062 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
4381 5063 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
4382 5064 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4383 5065 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4384 5066 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4385 5067 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4386 5068 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4387 5069 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
4388 5070 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
4389 5071 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
4418 5100 9.642343 ACCACATACGGATGTATATAGATGTAT 57.358 33.333 14.23 0.00 44.82 2.29
4419 5101 9.117183 GACCACATACGGATGTATATAGATGTA 57.883 37.037 14.23 0.00 44.82 2.29
4420 5102 7.068348 GGACCACATACGGATGTATATAGATGT 59.932 40.741 14.23 0.90 44.82 3.06
4421 5103 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
4422 5104 7.123383 TGGACCACATACGGATGTATATAGAT 58.877 38.462 14.23 0.00 44.82 1.98
4423 5105 6.486941 TGGACCACATACGGATGTATATAGA 58.513 40.000 14.23 0.00 44.82 1.98
4424 5106 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
4425 5107 8.057011 ACTATGGACCACATACGGATGTATATA 58.943 37.037 14.23 7.10 44.82 0.86
4426 5108 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
4427 5109 6.152154 CACTATGGACCACATACGGATGTATA 59.848 42.308 14.23 6.48 44.82 1.47
4428 5110 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
4429 5111 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
4431 5113 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
4432 5114 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
4433 5115 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
4434 5116 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
4435 5117 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
4436 5118 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
4437 5119 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
4438 5120 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
4439 5121 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
4440 5122 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
4441 5123 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
4442 5124 7.556844 TCTTTGTAGAGATTTCACTATGGACC 58.443 38.462 0.00 0.00 0.00 4.46
4443 5125 9.606631 AATCTTTGTAGAGATTTCACTATGGAC 57.393 33.333 0.00 0.00 42.24 4.02
4461 5143 9.338622 CCTCCGTTCCTAAATATAAATCTTTGT 57.661 33.333 0.00 0.00 0.00 2.83
4462 5144 9.555727 TCCTCCGTTCCTAAATATAAATCTTTG 57.444 33.333 0.00 0.00 0.00 2.77
4464 5146 9.780186 CTTCCTCCGTTCCTAAATATAAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
4465 5147 8.935741 ACTTCCTCCGTTCCTAAATATAAATCT 58.064 33.333 0.00 0.00 0.00 2.40
4472 5154 8.964772 GCTATATACTTCCTCCGTTCCTAAATA 58.035 37.037 0.00 0.00 0.00 1.40
4473 5155 7.453752 TGCTATATACTTCCTCCGTTCCTAAAT 59.546 37.037 0.00 0.00 0.00 1.40
4474 5156 6.779049 TGCTATATACTTCCTCCGTTCCTAAA 59.221 38.462 0.00 0.00 0.00 1.85
4475 5157 6.309357 TGCTATATACTTCCTCCGTTCCTAA 58.691 40.000 0.00 0.00 0.00 2.69
4476 5158 5.884322 TGCTATATACTTCCTCCGTTCCTA 58.116 41.667 0.00 0.00 0.00 2.94
4477 5159 4.737578 TGCTATATACTTCCTCCGTTCCT 58.262 43.478 0.00 0.00 0.00 3.36
4478 5160 5.464030 TTGCTATATACTTCCTCCGTTCC 57.536 43.478 0.00 0.00 0.00 3.62
4479 5161 6.688578 TCATTGCTATATACTTCCTCCGTTC 58.311 40.000 0.00 0.00 0.00 3.95
4480 5162 6.665992 TCATTGCTATATACTTCCTCCGTT 57.334 37.500 0.00 0.00 0.00 4.44
4481 5163 6.493802 TCTTCATTGCTATATACTTCCTCCGT 59.506 38.462 0.00 0.00 0.00 4.69
4482 5164 6.925211 TCTTCATTGCTATATACTTCCTCCG 58.075 40.000 0.00 0.00 0.00 4.63
4483 5165 8.317679 ACATCTTCATTGCTATATACTTCCTCC 58.682 37.037 0.00 0.00 0.00 4.30
4622 5313 7.772332 AGTCCTAACAAAACTAGCATATTCG 57.228 36.000 0.00 0.00 0.00 3.34
4638 5329 1.458445 GAAACACGCGGAAGTCCTAAC 59.542 52.381 12.47 0.00 0.00 2.34
4697 5388 2.592993 CCCTCGGTCTTTCTGGCCA 61.593 63.158 4.71 4.71 41.50 5.36
4699 5390 1.219393 CTCCCTCGGTCTTTCTGGC 59.781 63.158 0.00 0.00 0.00 4.85
4711 5402 2.227388 CTGCAAACACATGTTCTCCCTC 59.773 50.000 0.00 0.00 37.25 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.