Multiple sequence alignment - TraesCS3D01G299900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G299900 | chr3D | 100.000 | 4481 | 0 | 0 | 1 | 4481 | 414770141 | 414765661 | 0.000000e+00 | 8275.0 |
1 | TraesCS3D01G299900 | chr3D | 85.000 | 480 | 62 | 9 | 3001 | 3477 | 414640313 | 414639841 | 3.140000e-131 | 479.0 |
2 | TraesCS3D01G299900 | chr3D | 92.308 | 156 | 12 | 0 | 1001 | 1156 | 414641866 | 414641711 | 5.830000e-54 | 222.0 |
3 | TraesCS3D01G299900 | chr3A | 93.186 | 2216 | 117 | 17 | 2283 | 4481 | 535325497 | 535327695 | 0.000000e+00 | 3225.0 |
4 | TraesCS3D01G299900 | chr3A | 92.426 | 779 | 31 | 12 | 736 | 1490 | 535323513 | 535324287 | 0.000000e+00 | 1086.0 |
5 | TraesCS3D01G299900 | chr3A | 93.498 | 323 | 19 | 2 | 75 | 395 | 535322840 | 535323162 | 3.140000e-131 | 479.0 |
6 | TraesCS3D01G299900 | chr3A | 84.472 | 483 | 64 | 9 | 2998 | 3477 | 535719205 | 535719679 | 2.440000e-127 | 466.0 |
7 | TraesCS3D01G299900 | chr3A | 89.961 | 259 | 15 | 7 | 395 | 646 | 535323189 | 535323443 | 1.550000e-84 | 324.0 |
8 | TraesCS3D01G299900 | chr3A | 90.446 | 157 | 14 | 1 | 2100 | 2255 | 535325209 | 535325365 | 5.880000e-49 | 206.0 |
9 | TraesCS3D01G299900 | chr3A | 93.651 | 63 | 3 | 1 | 1475 | 1537 | 535325148 | 535325209 | 4.770000e-15 | 93.5 |
10 | TraesCS3D01G299900 | chr3B | 90.505 | 1485 | 72 | 26 | 2283 | 3747 | 540659182 | 540657747 | 0.000000e+00 | 1897.0 |
11 | TraesCS3D01G299900 | chr3B | 90.307 | 1238 | 53 | 24 | 733 | 1924 | 540660879 | 540659663 | 0.000000e+00 | 1559.0 |
12 | TraesCS3D01G299900 | chr3B | 84.807 | 441 | 65 | 2 | 3038 | 3477 | 540482533 | 540482094 | 4.110000e-120 | 442.0 |
13 | TraesCS3D01G299900 | chr3B | 93.722 | 223 | 14 | 0 | 3871 | 4093 | 540657397 | 540657175 | 7.180000e-88 | 335.0 |
14 | TraesCS3D01G299900 | chr3B | 88.341 | 223 | 22 | 2 | 1918 | 2139 | 540659612 | 540659393 | 9.560000e-67 | 265.0 |
15 | TraesCS3D01G299900 | chr3B | 80.886 | 361 | 37 | 18 | 296 | 628 | 540661266 | 540660910 | 5.750000e-64 | 255.0 |
16 | TraesCS3D01G299900 | chr3B | 83.658 | 257 | 30 | 9 | 4219 | 4466 | 375984125 | 375983872 | 9.690000e-57 | 231.0 |
17 | TraesCS3D01G299900 | chr3B | 91.720 | 157 | 13 | 0 | 1000 | 1156 | 540484021 | 540483865 | 7.550000e-53 | 219.0 |
18 | TraesCS3D01G299900 | chr3B | 87.313 | 134 | 16 | 1 | 98 | 230 | 540661394 | 540661261 | 7.760000e-33 | 152.0 |
19 | TraesCS3D01G299900 | chr3B | 95.161 | 62 | 3 | 0 | 397 | 458 | 540680086 | 540680025 | 1.030000e-16 | 99.0 |
20 | TraesCS3D01G299900 | chr7B | 82.670 | 352 | 51 | 8 | 4128 | 4471 | 446699712 | 446699363 | 2.030000e-78 | 303.0 |
21 | TraesCS3D01G299900 | chr7B | 100.000 | 30 | 0 | 0 | 4098 | 4127 | 70866008 | 70866037 | 6.260000e-04 | 56.5 |
22 | TraesCS3D01G299900 | chr5D | 78.788 | 363 | 55 | 16 | 4125 | 4471 | 57817448 | 57817804 | 1.620000e-54 | 224.0 |
23 | TraesCS3D01G299900 | chr5D | 87.349 | 166 | 18 | 3 | 4308 | 4471 | 503436567 | 503436403 | 2.130000e-43 | 187.0 |
24 | TraesCS3D01G299900 | chr2B | 87.425 | 167 | 17 | 4 | 4308 | 4471 | 380245816 | 380245651 | 5.920000e-44 | 189.0 |
25 | TraesCS3D01G299900 | chrUn | 80.827 | 266 | 27 | 12 | 4217 | 4471 | 358274370 | 358274118 | 2.130000e-43 | 187.0 |
26 | TraesCS3D01G299900 | chr2A | 86.826 | 167 | 18 | 4 | 4308 | 4471 | 424447170 | 424447335 | 2.750000e-42 | 183.0 |
27 | TraesCS3D01G299900 | chr6B | 85.632 | 174 | 19 | 5 | 4299 | 4469 | 640917721 | 640917551 | 1.280000e-40 | 178.0 |
28 | TraesCS3D01G299900 | chr1B | 100.000 | 38 | 0 | 0 | 1064 | 1101 | 133075744 | 133075781 | 2.240000e-08 | 71.3 |
29 | TraesCS3D01G299900 | chr1D | 97.368 | 38 | 1 | 0 | 1064 | 1101 | 80537156 | 80537193 | 1.040000e-06 | 65.8 |
30 | TraesCS3D01G299900 | chr1D | 100.000 | 32 | 0 | 0 | 1064 | 1095 | 80448391 | 80448422 | 4.840000e-05 | 60.2 |
31 | TraesCS3D01G299900 | chr4A | 100.000 | 29 | 0 | 0 | 4097 | 4125 | 610457951 | 610457923 | 2.000000e-03 | 54.7 |
32 | TraesCS3D01G299900 | chr2D | 100.000 | 29 | 0 | 0 | 4097 | 4125 | 128486509 | 128486537 | 2.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G299900 | chr3D | 414765661 | 414770141 | 4480 | True | 8275.000000 | 8275 | 100.000000 | 1 | 4481 | 1 | chr3D.!!$R1 | 4480 |
1 | TraesCS3D01G299900 | chr3D | 414639841 | 414641866 | 2025 | True | 350.500000 | 479 | 88.654000 | 1001 | 3477 | 2 | chr3D.!!$R2 | 2476 |
2 | TraesCS3D01G299900 | chr3A | 535322840 | 535327695 | 4855 | False | 902.250000 | 3225 | 92.194667 | 75 | 4481 | 6 | chr3A.!!$F2 | 4406 |
3 | TraesCS3D01G299900 | chr3B | 540657175 | 540661394 | 4219 | True | 743.833333 | 1897 | 88.512333 | 98 | 4093 | 6 | chr3B.!!$R4 | 3995 |
4 | TraesCS3D01G299900 | chr3B | 540482094 | 540484021 | 1927 | True | 330.500000 | 442 | 88.263500 | 1000 | 3477 | 2 | chr3B.!!$R3 | 2477 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
31 | 32 | 0.029300 | CGCCATGGTTTTATGAGCCG | 59.971 | 55.0 | 14.67 | 0.0 | 0.00 | 5.52 | F |
68 | 69 | 0.039165 | CAGCTCGGGCCAAACTTTTC | 60.039 | 55.0 | 2.00 | 0.0 | 39.73 | 2.29 | F |
71 | 72 | 0.040425 | CTCGGGCCAAACTTTTCACG | 60.040 | 55.0 | 4.39 | 0.0 | 0.00 | 4.35 | F |
1191 | 1292 | 0.257616 | CCGCCCTCCCCTTGAATTTA | 59.742 | 55.0 | 0.00 | 0.0 | 0.00 | 1.40 | F |
2216 | 3332 | 0.038744 | CCCAAGAGTCCCAAGCACAT | 59.961 | 55.0 | 0.00 | 0.0 | 0.00 | 3.21 | F |
3273 | 4872 | 0.035317 | AGATCAAGAACGTGCTGGCA | 59.965 | 50.0 | 0.00 | 0.0 | 0.00 | 4.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1191 | 1292 | 0.173481 | CATCGACAGTCACGGATGGT | 59.827 | 55.0 | 0.41 | 0.0 | 0.00 | 3.55 | R |
1351 | 1458 | 0.180878 | CTCCGGCCCCCGTTAAAATA | 59.819 | 55.0 | 0.00 | 0.0 | 46.80 | 1.40 | R |
1882 | 2889 | 0.400594 | AAGAGTAACAGGGTGGGTGC | 59.599 | 55.0 | 0.00 | 0.0 | 0.00 | 5.01 | R |
2485 | 3725 | 0.527113 | TGCAAAAGCATCATGACCCG | 59.473 | 50.0 | 0.00 | 0.0 | 0.00 | 5.28 | R |
3384 | 4983 | 0.098376 | GGTACGCGTCGAACAGAGAT | 59.902 | 55.0 | 18.63 | 0.0 | 0.00 | 2.75 | R |
4363 | 6189 | 0.034337 | TGTGCTCCACGGACTAAACC | 59.966 | 55.0 | 0.00 | 0.0 | 37.14 | 3.27 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 2.953821 | CGCAGACGCCATGGTTTT | 59.046 | 55.556 | 14.67 | 0.00 | 33.11 | 2.43 |
24 | 25 | 2.167161 | CGCAGACGCCATGGTTTTA | 58.833 | 52.632 | 14.67 | 0.00 | 33.11 | 1.52 |
25 | 26 | 0.732571 | CGCAGACGCCATGGTTTTAT | 59.267 | 50.000 | 14.67 | 0.00 | 33.11 | 1.40 |
26 | 27 | 1.531677 | CGCAGACGCCATGGTTTTATG | 60.532 | 52.381 | 14.67 | 6.62 | 33.11 | 1.90 |
27 | 28 | 1.742831 | GCAGACGCCATGGTTTTATGA | 59.257 | 47.619 | 14.67 | 0.00 | 0.00 | 2.15 |
28 | 29 | 2.223340 | GCAGACGCCATGGTTTTATGAG | 60.223 | 50.000 | 14.67 | 0.00 | 0.00 | 2.90 |
29 | 30 | 2.017049 | AGACGCCATGGTTTTATGAGC | 58.983 | 47.619 | 14.67 | 0.00 | 0.00 | 4.26 |
30 | 31 | 1.065551 | GACGCCATGGTTTTATGAGCC | 59.934 | 52.381 | 14.67 | 0.00 | 0.00 | 4.70 |
31 | 32 | 0.029300 | CGCCATGGTTTTATGAGCCG | 59.971 | 55.000 | 14.67 | 0.00 | 0.00 | 5.52 |
32 | 33 | 0.385390 | GCCATGGTTTTATGAGCCGG | 59.615 | 55.000 | 14.67 | 0.00 | 0.00 | 6.13 |
33 | 34 | 1.032014 | CCATGGTTTTATGAGCCGGG | 58.968 | 55.000 | 2.18 | 0.00 | 0.00 | 5.73 |
34 | 35 | 0.385390 | CATGGTTTTATGAGCCGGGC | 59.615 | 55.000 | 12.11 | 12.11 | 0.00 | 6.13 |
35 | 36 | 0.755327 | ATGGTTTTATGAGCCGGGCC | 60.755 | 55.000 | 17.02 | 8.02 | 0.00 | 5.80 |
36 | 37 | 1.076995 | GGTTTTATGAGCCGGGCCT | 60.077 | 57.895 | 17.02 | 2.62 | 0.00 | 5.19 |
37 | 38 | 0.683179 | GGTTTTATGAGCCGGGCCTT | 60.683 | 55.000 | 17.02 | 8.14 | 0.00 | 4.35 |
38 | 39 | 1.182667 | GTTTTATGAGCCGGGCCTTT | 58.817 | 50.000 | 17.02 | 2.68 | 0.00 | 3.11 |
39 | 40 | 1.548719 | GTTTTATGAGCCGGGCCTTTT | 59.451 | 47.619 | 17.02 | 0.00 | 0.00 | 2.27 |
40 | 41 | 1.931635 | TTTATGAGCCGGGCCTTTTT | 58.068 | 45.000 | 17.02 | 0.00 | 0.00 | 1.94 |
58 | 59 | 3.402628 | TTTTATAGGATCAGCTCGGGC | 57.597 | 47.619 | 0.00 | 0.00 | 39.06 | 6.13 |
59 | 60 | 1.267121 | TTATAGGATCAGCTCGGGCC | 58.733 | 55.000 | 2.00 | 0.00 | 39.73 | 5.80 |
60 | 61 | 0.114364 | TATAGGATCAGCTCGGGCCA | 59.886 | 55.000 | 2.00 | 0.00 | 39.73 | 5.36 |
61 | 62 | 0.764369 | ATAGGATCAGCTCGGGCCAA | 60.764 | 55.000 | 2.00 | 0.00 | 39.73 | 4.52 |
62 | 63 | 0.980754 | TAGGATCAGCTCGGGCCAAA | 60.981 | 55.000 | 2.00 | 0.00 | 39.73 | 3.28 |
63 | 64 | 2.115291 | GGATCAGCTCGGGCCAAAC | 61.115 | 63.158 | 2.00 | 0.00 | 39.73 | 2.93 |
64 | 65 | 1.078143 | GATCAGCTCGGGCCAAACT | 60.078 | 57.895 | 2.00 | 0.00 | 39.73 | 2.66 |
65 | 66 | 0.678048 | GATCAGCTCGGGCCAAACTT | 60.678 | 55.000 | 2.00 | 0.00 | 39.73 | 2.66 |
66 | 67 | 0.251341 | ATCAGCTCGGGCCAAACTTT | 60.251 | 50.000 | 2.00 | 0.00 | 39.73 | 2.66 |
67 | 68 | 0.467290 | TCAGCTCGGGCCAAACTTTT | 60.467 | 50.000 | 2.00 | 0.00 | 39.73 | 2.27 |
68 | 69 | 0.039165 | CAGCTCGGGCCAAACTTTTC | 60.039 | 55.000 | 2.00 | 0.00 | 39.73 | 2.29 |
69 | 70 | 0.467290 | AGCTCGGGCCAAACTTTTCA | 60.467 | 50.000 | 2.00 | 0.00 | 39.73 | 2.69 |
70 | 71 | 0.318699 | GCTCGGGCCAAACTTTTCAC | 60.319 | 55.000 | 4.39 | 0.00 | 0.00 | 3.18 |
71 | 72 | 0.040425 | CTCGGGCCAAACTTTTCACG | 60.040 | 55.000 | 4.39 | 0.00 | 0.00 | 4.35 |
72 | 73 | 1.007849 | CGGGCCAAACTTTTCACGG | 60.008 | 57.895 | 4.39 | 0.00 | 0.00 | 4.94 |
73 | 74 | 1.365999 | GGGCCAAACTTTTCACGGG | 59.634 | 57.895 | 4.39 | 0.00 | 0.00 | 5.28 |
86 | 87 | 3.495434 | TTCACGGGTCATGTAAAAGGT | 57.505 | 42.857 | 0.00 | 0.00 | 0.00 | 3.50 |
225 | 226 | 6.771188 | AGAAGACGTTTTTGTCACTATGAG | 57.229 | 37.500 | 0.00 | 0.00 | 41.41 | 2.90 |
233 | 234 | 4.829064 | TTTGTCACTATGAGGTGTTTGC | 57.171 | 40.909 | 0.00 | 0.00 | 38.28 | 3.68 |
259 | 260 | 7.435488 | CGATAACTTCGTCCATCTTAAGATTGT | 59.565 | 37.037 | 15.49 | 3.92 | 43.01 | 2.71 |
260 | 261 | 6.727824 | AACTTCGTCCATCTTAAGATTGTG | 57.272 | 37.500 | 15.49 | 6.42 | 31.21 | 3.33 |
303 | 305 | 1.559065 | GCTTAGGGGTAGGGTGTGCA | 61.559 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
330 | 332 | 1.133407 | TGTTCGTGCGTGTGTACATC | 58.867 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
464 | 494 | 3.291809 | AACAAACTTAATTTCCGGCCG | 57.708 | 42.857 | 21.04 | 21.04 | 0.00 | 6.13 |
465 | 495 | 2.506444 | ACAAACTTAATTTCCGGCCGA | 58.494 | 42.857 | 30.73 | 7.23 | 0.00 | 5.54 |
466 | 496 | 2.885894 | ACAAACTTAATTTCCGGCCGAA | 59.114 | 40.909 | 30.73 | 15.30 | 0.00 | 4.30 |
468 | 498 | 2.484742 | ACTTAATTTCCGGCCGAACT | 57.515 | 45.000 | 30.73 | 6.18 | 0.00 | 3.01 |
469 | 499 | 3.615224 | ACTTAATTTCCGGCCGAACTA | 57.385 | 42.857 | 30.73 | 4.95 | 0.00 | 2.24 |
470 | 500 | 3.941573 | ACTTAATTTCCGGCCGAACTAA | 58.058 | 40.909 | 30.73 | 13.44 | 0.00 | 2.24 |
472 | 502 | 4.761227 | ACTTAATTTCCGGCCGAACTAAAA | 59.239 | 37.500 | 30.73 | 17.94 | 0.00 | 1.52 |
473 | 503 | 3.842732 | AATTTCCGGCCGAACTAAAAG | 57.157 | 42.857 | 30.73 | 7.15 | 0.00 | 2.27 |
474 | 504 | 2.259266 | TTTCCGGCCGAACTAAAAGT | 57.741 | 45.000 | 30.73 | 0.00 | 0.00 | 2.66 |
545 | 591 | 5.966742 | AACTAAAAGTGATGGAGAAAGGC | 57.033 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
628 | 678 | 3.546271 | GTCGCTGAAAAGTGAAAACCAAC | 59.454 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
637 | 705 | 8.617809 | TGAAAAGTGAAAACCAACTATACAGAC | 58.382 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
649 | 717 | 7.616150 | ACCAACTATACAGACACAGAATAGAGT | 59.384 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
652 | 720 | 7.347252 | ACTATACAGACACAGAATAGAGTGGA | 58.653 | 38.462 | 0.00 | 0.00 | 39.99 | 4.02 |
654 | 722 | 4.411927 | ACAGACACAGAATAGAGTGGAGT | 58.588 | 43.478 | 0.00 | 0.00 | 39.99 | 3.85 |
655 | 723 | 5.571285 | ACAGACACAGAATAGAGTGGAGTA | 58.429 | 41.667 | 0.00 | 0.00 | 39.99 | 2.59 |
656 | 724 | 5.416326 | ACAGACACAGAATAGAGTGGAGTAC | 59.584 | 44.000 | 0.00 | 0.00 | 39.99 | 2.73 |
657 | 725 | 5.650266 | CAGACACAGAATAGAGTGGAGTACT | 59.350 | 44.000 | 0.00 | 0.00 | 44.02 | 2.73 |
658 | 726 | 6.824196 | CAGACACAGAATAGAGTGGAGTACTA | 59.176 | 42.308 | 0.00 | 0.00 | 40.53 | 1.82 |
659 | 727 | 7.011950 | CAGACACAGAATAGAGTGGAGTACTAG | 59.988 | 44.444 | 0.00 | 0.00 | 40.53 | 2.57 |
691 | 763 | 9.810231 | AGCTCGTGCAAAAATAAAATAAAATTG | 57.190 | 25.926 | 12.58 | 0.00 | 42.74 | 2.32 |
692 | 764 | 9.804547 | GCTCGTGCAAAAATAAAATAAAATTGA | 57.195 | 25.926 | 4.26 | 0.00 | 39.41 | 2.57 |
710 | 782 | 8.870075 | AAAATTGAGGAGTACTGCTATTTCTT | 57.130 | 30.769 | 17.74 | 5.87 | 0.00 | 2.52 |
711 | 783 | 8.870075 | AAATTGAGGAGTACTGCTATTTCTTT | 57.130 | 30.769 | 17.74 | 9.78 | 0.00 | 2.52 |
712 | 784 | 8.870075 | AATTGAGGAGTACTGCTATTTCTTTT | 57.130 | 30.769 | 17.74 | 2.22 | 0.00 | 2.27 |
713 | 785 | 8.870075 | ATTGAGGAGTACTGCTATTTCTTTTT | 57.130 | 30.769 | 17.74 | 0.00 | 0.00 | 1.94 |
800 | 872 | 2.606519 | AGCCGCACCTTCCACCTA | 60.607 | 61.111 | 0.00 | 0.00 | 0.00 | 3.08 |
809 | 881 | 1.358152 | CCTTCCACCTAACCTCACCA | 58.642 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
985 | 1074 | 2.468532 | AAAAAGGTTCGAGTGCGTTG | 57.531 | 45.000 | 0.00 | 0.00 | 38.98 | 4.10 |
1170 | 1266 | 1.268992 | TACGTGCCCATGCCCTAACT | 61.269 | 55.000 | 0.00 | 0.00 | 36.33 | 2.24 |
1191 | 1292 | 0.257616 | CCGCCCTCCCCTTGAATTTA | 59.742 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1213 | 1314 | 0.456221 | ATCCGTGACTGTCGATGGTC | 59.544 | 55.000 | 11.97 | 11.97 | 0.00 | 4.02 |
1341 | 1448 | 1.069204 | GTCGCTTCCATGCCTCTATCA | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
1349 | 1456 | 5.894298 | TCCATGCCTCTATCACTGTTTAT | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1350 | 1457 | 6.252599 | TCCATGCCTCTATCACTGTTTATT | 57.747 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1351 | 1458 | 6.662755 | TCCATGCCTCTATCACTGTTTATTT | 58.337 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1352 | 1459 | 7.801104 | TCCATGCCTCTATCACTGTTTATTTA | 58.199 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1384 | 1491 | 1.064946 | CGGAGAGATGTCGCTGTCC | 59.935 | 63.158 | 0.00 | 0.00 | 43.07 | 4.02 |
1405 | 1514 | 8.148437 | TGTCCCTCTCGTATAATCTAGTATCT | 57.852 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1466 | 1576 | 5.671493 | AGACTGGGGTTCGATATTTACAAG | 58.329 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1483 | 2474 | 3.703420 | ACAAGTCATTCGAGTATACGGC | 58.297 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
1512 | 2503 | 1.140589 | CCGCAGCTCGTCTCAGATT | 59.859 | 57.895 | 5.15 | 0.00 | 36.19 | 2.40 |
1556 | 2547 | 3.429272 | CCGCGTGGTGACCTTAATTAGTA | 60.429 | 47.826 | 6.91 | 0.00 | 0.00 | 1.82 |
1585 | 2577 | 4.700213 | GCTGCTACCCAATCTTTTAGTCAA | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1620 | 2612 | 5.375417 | CACTTGCAGTGTGGATAAAATCA | 57.625 | 39.130 | 12.37 | 0.00 | 41.19 | 2.57 |
1621 | 2613 | 5.957798 | CACTTGCAGTGTGGATAAAATCAT | 58.042 | 37.500 | 12.37 | 0.00 | 41.19 | 2.45 |
1623 | 2615 | 6.968904 | CACTTGCAGTGTGGATAAAATCATAC | 59.031 | 38.462 | 12.37 | 0.00 | 41.19 | 2.39 |
1624 | 2616 | 6.658816 | ACTTGCAGTGTGGATAAAATCATACA | 59.341 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1625 | 2617 | 6.682423 | TGCAGTGTGGATAAAATCATACAG | 57.318 | 37.500 | 0.00 | 0.00 | 31.54 | 2.74 |
1626 | 2618 | 6.179756 | TGCAGTGTGGATAAAATCATACAGT | 58.820 | 36.000 | 0.00 | 0.00 | 34.19 | 3.55 |
1627 | 2619 | 7.334858 | TGCAGTGTGGATAAAATCATACAGTA | 58.665 | 34.615 | 0.00 | 0.00 | 33.27 | 2.74 |
1649 | 2641 | 3.550820 | TCATATTTTCCCCACATCCACG | 58.449 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
1690 | 2682 | 4.627467 | CACCTACTTCACTGTATCAAGTGC | 59.373 | 45.833 | 8.47 | 0.00 | 45.93 | 4.40 |
1695 | 2687 | 5.479306 | ACTTCACTGTATCAAGTGCGTTAT | 58.521 | 37.500 | 0.00 | 0.00 | 45.93 | 1.89 |
1707 | 2699 | 4.916099 | AGTGCGTTATTTTACGTCTTCC | 57.084 | 40.909 | 0.00 | 0.00 | 43.22 | 3.46 |
1744 | 2737 | 5.818136 | ATACAAGATTTGGATTCGGTGTG | 57.182 | 39.130 | 0.00 | 0.00 | 26.62 | 3.82 |
1746 | 2739 | 3.081061 | CAAGATTTGGATTCGGTGTGGA | 58.919 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
1758 | 2751 | 5.682943 | TTCGGTGTGGAAATTTGTTCTAG | 57.317 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
1772 | 2779 | 7.602517 | ATTTGTTCTAGATGTGTTAGTGCTC | 57.397 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1797 | 2804 | 4.082571 | GCTAGTTCGTAGGTACCTTGACAA | 60.083 | 45.833 | 22.11 | 7.54 | 0.00 | 3.18 |
1821 | 2828 | 5.680594 | TTAATCTTGCAGCAAATCCCAAT | 57.319 | 34.783 | 9.65 | 0.00 | 0.00 | 3.16 |
1850 | 2857 | 4.034510 | GCAGTATACAGTGTGAGCAAATCC | 59.965 | 45.833 | 5.88 | 0.00 | 0.00 | 3.01 |
1897 | 2904 | 1.303317 | CCAGCACCCACCCTGTTAC | 60.303 | 63.158 | 0.00 | 0.00 | 0.00 | 2.50 |
1898 | 2905 | 1.761174 | CAGCACCCACCCTGTTACT | 59.239 | 57.895 | 0.00 | 0.00 | 0.00 | 2.24 |
1899 | 2906 | 0.321653 | CAGCACCCACCCTGTTACTC | 60.322 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1919 | 2932 | 5.250200 | ACTCTTGTGTCACTTTGTACCAAA | 58.750 | 37.500 | 4.27 | 0.00 | 0.00 | 3.28 |
2018 | 3134 | 5.365021 | AGTCATCCCTATCCTTTGACTTG | 57.635 | 43.478 | 0.00 | 0.00 | 43.24 | 3.16 |
2035 | 3151 | 9.612620 | CTTTGACTTGTTTCTTATCAATACACC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
2036 | 3152 | 8.684386 | TTGACTTGTTTCTTATCAATACACCA | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
2060 | 3176 | 7.443272 | CCACATACATCTATCAGATTTGCTTGA | 59.557 | 37.037 | 0.00 | 0.00 | 31.32 | 3.02 |
2068 | 3184 | 4.574674 | TCAGATTTGCTTGATGGTAGGT | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.08 |
2092 | 3208 | 4.637600 | AGGTGTGGTAATAATAGGGTGGA | 58.362 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
2093 | 3209 | 5.232347 | AGGTGTGGTAATAATAGGGTGGAT | 58.768 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2110 | 3226 | 4.321230 | GGTGGATGTTAAGGTTTGCAAGAG | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
2135 | 3251 | 5.486526 | CATATTCTCTTCCAGTATGAGGCC | 58.513 | 45.833 | 0.00 | 0.00 | 39.69 | 5.19 |
2190 | 3306 | 6.348540 | CCTTGGTTCAGCAAACTATCTTACAC | 60.349 | 42.308 | 2.53 | 0.00 | 38.02 | 2.90 |
2195 | 3311 | 7.309194 | GGTTCAGCAAACTATCTTACACCATTT | 60.309 | 37.037 | 2.53 | 0.00 | 38.02 | 2.32 |
2201 | 3317 | 7.094118 | GCAAACTATCTTACACCATTTACCCAA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.12 |
2214 | 3330 | 0.690762 | TACCCAAGAGTCCCAAGCAC | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2215 | 3331 | 1.352622 | ACCCAAGAGTCCCAAGCACA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2216 | 3332 | 0.038744 | CCCAAGAGTCCCAAGCACAT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2217 | 3333 | 1.171308 | CCAAGAGTCCCAAGCACATG | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2218 | 3334 | 1.546323 | CCAAGAGTCCCAAGCACATGT | 60.546 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
2219 | 3335 | 1.538512 | CAAGAGTCCCAAGCACATGTG | 59.461 | 52.381 | 21.83 | 21.83 | 0.00 | 3.21 |
2251 | 3368 | 8.031864 | TCAGAAAGTTGACAGCAAAACATAAAA | 58.968 | 29.630 | 0.00 | 0.00 | 35.42 | 1.52 |
2255 | 3436 | 6.630071 | AGTTGACAGCAAAACATAAAACAGT | 58.370 | 32.000 | 0.00 | 0.00 | 35.42 | 3.55 |
2275 | 3456 | 3.956848 | AGTCACTACAGCAGCATCTCATA | 59.043 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
2280 | 3461 | 4.520111 | ACTACAGCAGCATCTCATAGAGAG | 59.480 | 45.833 | 2.94 | 0.00 | 42.26 | 3.20 |
2447 | 3686 | 4.557695 | CGGTATGATGCTACCTCTTGAGAC | 60.558 | 50.000 | 0.00 | 0.00 | 39.26 | 3.36 |
2485 | 3725 | 8.921205 | TCTACCCCTCATAAACAGAACTATAAC | 58.079 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2572 | 3829 | 7.307455 | GCCTTGTAGTATAACAAAGCTAGCATC | 60.307 | 40.741 | 18.83 | 0.00 | 41.50 | 3.91 |
2590 | 3852 | 3.448660 | GCATCTCCACTTGGGCTTAAATT | 59.551 | 43.478 | 0.00 | 0.00 | 36.21 | 1.82 |
2618 | 3880 | 6.183361 | ACCTGAGCCTTTACTAGAAACAAAGA | 60.183 | 38.462 | 0.00 | 0.00 | 32.20 | 2.52 |
2712 | 3989 | 3.328382 | TGTCTAATTGTTAGCTGCCGT | 57.672 | 42.857 | 0.00 | 0.00 | 33.23 | 5.68 |
2733 | 4010 | 5.047306 | CCGTCTGGCATTATATTAGGAGTCA | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2734 | 4011 | 6.455647 | CGTCTGGCATTATATTAGGAGTCAA | 58.544 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2788 | 4385 | 3.515630 | CTCGTATGCTTGAAGCTTGAGA | 58.484 | 45.455 | 18.94 | 13.60 | 42.97 | 3.27 |
2801 | 4398 | 8.975663 | TTGAAGCTTGAGATTAGAATGATGAT | 57.024 | 30.769 | 2.10 | 0.00 | 0.00 | 2.45 |
2834 | 4431 | 8.726870 | TTATATAGTTACCAACCACAAGCTTC | 57.273 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2993 | 4592 | 9.722184 | GGAATAAAATAGTACCATACTCCCTTC | 57.278 | 37.037 | 0.00 | 0.00 | 40.14 | 3.46 |
3035 | 4634 | 7.360361 | TGGTTCTATTTTCTTTTTCTCTTCGC | 58.640 | 34.615 | 0.00 | 0.00 | 0.00 | 4.70 |
3273 | 4872 | 0.035317 | AGATCAAGAACGTGCTGGCA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3320 | 4919 | 1.205893 | CAAGTACCTGGCTGGAGACTC | 59.794 | 57.143 | 18.12 | 0.00 | 39.71 | 3.36 |
3433 | 5032 | 2.520536 | GCCTGGTGGACTGACCTGT | 61.521 | 63.158 | 0.00 | 0.00 | 39.86 | 4.00 |
3527 | 5126 | 1.659098 | CGAAATAAGCCGAGGTGTGTC | 59.341 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
3583 | 5182 | 2.562738 | TGTGATGTCTCCTCGTGTTGAT | 59.437 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3639 | 5239 | 5.645067 | TCTTGTACTGAAATGAGCATTCCTG | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3670 | 5270 | 7.560368 | TGGTTTAATAATAAATTGTGCCCAGG | 58.440 | 34.615 | 0.00 | 0.00 | 33.76 | 4.45 |
3682 | 5282 | 4.853468 | TGTGCCCAGGTATTTATCTCAA | 57.147 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
3686 | 5286 | 5.652452 | GTGCCCAGGTATTTATCTCAACTTT | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3719 | 5319 | 2.897436 | TCTGTTGCTTCGATGATCTGG | 58.103 | 47.619 | 1.89 | 0.00 | 0.00 | 3.86 |
3728 | 5328 | 1.973515 | TCGATGATCTGGCCATTAGCT | 59.026 | 47.619 | 5.51 | 0.00 | 43.05 | 3.32 |
3729 | 5329 | 2.028658 | TCGATGATCTGGCCATTAGCTC | 60.029 | 50.000 | 5.51 | 0.00 | 43.05 | 4.09 |
3787 | 5387 | 0.387929 | AGTCTGTTTCGGAAGACGCA | 59.612 | 50.000 | 3.39 | 0.00 | 46.05 | 5.24 |
3789 | 5389 | 0.944311 | TCTGTTTCGGAAGACGCAGC | 60.944 | 55.000 | 0.00 | 0.00 | 43.86 | 5.25 |
3846 | 5446 | 2.827921 | GTTTGTGCCATTTGATCCTCCT | 59.172 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
3861 | 5461 | 9.449719 | TTTGATCCTCCTAAGTTGAATAGTTTC | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
3863 | 5463 | 8.260818 | TGATCCTCCTAAGTTGAATAGTTTCAG | 58.739 | 37.037 | 0.00 | 0.00 | 42.60 | 3.02 |
3889 | 5715 | 4.340381 | GCCAAAGAGCACCATATGATTCTT | 59.660 | 41.667 | 3.65 | 4.95 | 36.10 | 2.52 |
3946 | 5772 | 7.926018 | CACACCTAGCATGTGTAGTGATATTTA | 59.074 | 37.037 | 14.28 | 0.00 | 44.77 | 1.40 |
3963 | 5789 | 7.800380 | GTGATATTTATCCAATGCTTCTTCACG | 59.200 | 37.037 | 0.00 | 0.00 | 31.71 | 4.35 |
4103 | 5929 | 1.303561 | GGGCCTCTGACATGCACAA | 60.304 | 57.895 | 0.84 | 0.00 | 0.00 | 3.33 |
4124 | 5950 | 4.399004 | AGTGCTTAGATGAGGTGCTAAG | 57.601 | 45.455 | 0.00 | 0.00 | 43.95 | 2.18 |
4159 | 5985 | 3.508426 | GACTAGGGGTCCTAACCTATGG | 58.492 | 54.545 | 0.00 | 0.00 | 45.66 | 2.74 |
4187 | 6013 | 4.184629 | GTTATCTATGGGCCGAGCTAATG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
4197 | 6023 | 0.753262 | CGAGCTAATGGCCCACTAGT | 59.247 | 55.000 | 0.00 | 0.00 | 43.05 | 2.57 |
4198 | 6024 | 1.139058 | CGAGCTAATGGCCCACTAGTT | 59.861 | 52.381 | 0.00 | 0.00 | 43.05 | 2.24 |
4203 | 6029 | 0.676782 | AATGGCCCACTAGTTGTCGC | 60.677 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4252 | 6078 | 2.161609 | CGTAAGCAAGATGGAAACCACC | 59.838 | 50.000 | 0.00 | 0.00 | 35.80 | 4.61 |
4254 | 6080 | 0.400213 | AGCAAGATGGAAACCACCGA | 59.600 | 50.000 | 0.00 | 0.00 | 35.80 | 4.69 |
4281 | 6107 | 8.095169 | AGACTTCGTATACTTCAAGGACAATTT | 58.905 | 33.333 | 0.56 | 0.00 | 0.00 | 1.82 |
4317 | 6143 | 3.985019 | TTATTCCTAGTTGCCAACCGA | 57.015 | 42.857 | 3.45 | 0.00 | 0.00 | 4.69 |
4324 | 6150 | 3.070446 | CCTAGTTGCCAACCGACCATATA | 59.930 | 47.826 | 3.45 | 0.00 | 0.00 | 0.86 |
4358 | 6184 | 1.280998 | ACCCCGGTGCATATATAAGCC | 59.719 | 52.381 | 7.45 | 0.00 | 0.00 | 4.35 |
4363 | 6189 | 2.738643 | CGGTGCATATATAAGCCGAGGG | 60.739 | 54.545 | 7.45 | 0.00 | 41.45 | 4.30 |
4371 | 6197 | 4.886496 | ATATAAGCCGAGGGGTTTAGTC | 57.114 | 45.455 | 4.25 | 0.00 | 40.84 | 2.59 |
4373 | 6199 | 1.896122 | AAGCCGAGGGGTTTAGTCCG | 61.896 | 60.000 | 0.00 | 0.00 | 40.84 | 4.79 |
4375 | 6201 | 1.217244 | CCGAGGGGTTTAGTCCGTG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
4376 | 6202 | 1.217244 | CGAGGGGTTTAGTCCGTGG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
4388 | 6214 | 0.719465 | GTCCGTGGAGCACAATTACG | 59.281 | 55.000 | 0.00 | 0.00 | 33.40 | 3.18 |
4402 | 6228 | 5.180271 | CACAATTACGAGCCTTAGGGTTTA | 58.820 | 41.667 | 3.86 | 0.00 | 31.55 | 2.01 |
4412 | 6238 | 5.254115 | AGCCTTAGGGTTTAGAACACAATC | 58.746 | 41.667 | 0.00 | 0.00 | 37.23 | 2.67 |
4420 | 6246 | 8.682936 | AGGGTTTAGAACACAATCATATGATC | 57.317 | 34.615 | 18.44 | 6.18 | 37.23 | 2.92 |
4422 | 6248 | 8.778358 | GGGTTTAGAACACAATCATATGATCTC | 58.222 | 37.037 | 18.44 | 10.13 | 34.08 | 2.75 |
4458 | 6285 | 2.769663 | TGTACCTGTACCCCATCACATC | 59.230 | 50.000 | 5.07 | 0.00 | 35.26 | 3.06 |
4471 | 6298 | 6.612456 | ACCCCATCACATCAATACAATCAAAT | 59.388 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 0.732571 | ATAAAACCATGGCGTCTGCG | 59.267 | 50.000 | 13.04 | 0.00 | 44.10 | 5.18 |
7 | 8 | 1.742831 | TCATAAAACCATGGCGTCTGC | 59.257 | 47.619 | 13.04 | 0.00 | 41.71 | 4.26 |
8 | 9 | 2.223340 | GCTCATAAAACCATGGCGTCTG | 60.223 | 50.000 | 13.04 | 3.58 | 0.00 | 3.51 |
9 | 10 | 2.017049 | GCTCATAAAACCATGGCGTCT | 58.983 | 47.619 | 13.04 | 0.00 | 0.00 | 4.18 |
10 | 11 | 1.065551 | GGCTCATAAAACCATGGCGTC | 59.934 | 52.381 | 13.04 | 0.00 | 0.00 | 5.19 |
11 | 12 | 1.102978 | GGCTCATAAAACCATGGCGT | 58.897 | 50.000 | 13.04 | 0.00 | 0.00 | 5.68 |
12 | 13 | 0.029300 | CGGCTCATAAAACCATGGCG | 59.971 | 55.000 | 13.04 | 0.00 | 37.17 | 5.69 |
13 | 14 | 0.385390 | CCGGCTCATAAAACCATGGC | 59.615 | 55.000 | 13.04 | 0.00 | 0.00 | 4.40 |
14 | 15 | 1.032014 | CCCGGCTCATAAAACCATGG | 58.968 | 55.000 | 11.19 | 11.19 | 0.00 | 3.66 |
15 | 16 | 0.385390 | GCCCGGCTCATAAAACCATG | 59.615 | 55.000 | 0.71 | 0.00 | 0.00 | 3.66 |
16 | 17 | 0.755327 | GGCCCGGCTCATAAAACCAT | 60.755 | 55.000 | 9.86 | 0.00 | 0.00 | 3.55 |
17 | 18 | 1.379309 | GGCCCGGCTCATAAAACCA | 60.379 | 57.895 | 9.86 | 0.00 | 0.00 | 3.67 |
18 | 19 | 0.683179 | AAGGCCCGGCTCATAAAACC | 60.683 | 55.000 | 9.86 | 0.00 | 0.00 | 3.27 |
19 | 20 | 1.182667 | AAAGGCCCGGCTCATAAAAC | 58.817 | 50.000 | 9.86 | 0.00 | 0.00 | 2.43 |
20 | 21 | 1.931635 | AAAAGGCCCGGCTCATAAAA | 58.068 | 45.000 | 9.86 | 0.00 | 0.00 | 1.52 |
21 | 22 | 1.931635 | AAAAAGGCCCGGCTCATAAA | 58.068 | 45.000 | 9.86 | 0.00 | 0.00 | 1.40 |
22 | 23 | 3.681909 | AAAAAGGCCCGGCTCATAA | 57.318 | 47.368 | 9.86 | 0.00 | 0.00 | 1.90 |
37 | 38 | 3.496160 | GGCCCGAGCTGATCCTATAAAAA | 60.496 | 47.826 | 0.00 | 0.00 | 39.73 | 1.94 |
38 | 39 | 2.038557 | GGCCCGAGCTGATCCTATAAAA | 59.961 | 50.000 | 0.00 | 0.00 | 39.73 | 1.52 |
39 | 40 | 1.623811 | GGCCCGAGCTGATCCTATAAA | 59.376 | 52.381 | 0.00 | 0.00 | 39.73 | 1.40 |
40 | 41 | 1.267121 | GGCCCGAGCTGATCCTATAA | 58.733 | 55.000 | 0.00 | 0.00 | 39.73 | 0.98 |
41 | 42 | 0.114364 | TGGCCCGAGCTGATCCTATA | 59.886 | 55.000 | 0.00 | 0.00 | 39.73 | 1.31 |
42 | 43 | 0.764369 | TTGGCCCGAGCTGATCCTAT | 60.764 | 55.000 | 0.00 | 0.00 | 39.73 | 2.57 |
43 | 44 | 0.980754 | TTTGGCCCGAGCTGATCCTA | 60.981 | 55.000 | 0.00 | 0.00 | 39.73 | 2.94 |
44 | 45 | 2.300967 | TTTGGCCCGAGCTGATCCT | 61.301 | 57.895 | 0.00 | 0.00 | 39.73 | 3.24 |
45 | 46 | 2.115291 | GTTTGGCCCGAGCTGATCC | 61.115 | 63.158 | 0.00 | 0.00 | 39.73 | 3.36 |
46 | 47 | 0.678048 | AAGTTTGGCCCGAGCTGATC | 60.678 | 55.000 | 0.00 | 0.00 | 39.73 | 2.92 |
47 | 48 | 0.251341 | AAAGTTTGGCCCGAGCTGAT | 60.251 | 50.000 | 0.00 | 0.00 | 39.73 | 2.90 |
48 | 49 | 0.467290 | AAAAGTTTGGCCCGAGCTGA | 60.467 | 50.000 | 0.00 | 0.00 | 39.73 | 4.26 |
49 | 50 | 0.039165 | GAAAAGTTTGGCCCGAGCTG | 60.039 | 55.000 | 0.00 | 0.00 | 39.73 | 4.24 |
50 | 51 | 0.467290 | TGAAAAGTTTGGCCCGAGCT | 60.467 | 50.000 | 0.00 | 0.00 | 39.73 | 4.09 |
51 | 52 | 0.318699 | GTGAAAAGTTTGGCCCGAGC | 60.319 | 55.000 | 0.00 | 0.00 | 38.76 | 5.03 |
52 | 53 | 0.040425 | CGTGAAAAGTTTGGCCCGAG | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
53 | 54 | 1.448922 | CCGTGAAAAGTTTGGCCCGA | 61.449 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
54 | 55 | 1.007849 | CCGTGAAAAGTTTGGCCCG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
55 | 56 | 1.365999 | CCCGTGAAAAGTTTGGCCC | 59.634 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
56 | 57 | 0.031585 | GACCCGTGAAAAGTTTGGCC | 59.968 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
57 | 58 | 0.741915 | TGACCCGTGAAAAGTTTGGC | 59.258 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
58 | 59 | 2.360801 | ACATGACCCGTGAAAAGTTTGG | 59.639 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
59 | 60 | 3.708563 | ACATGACCCGTGAAAAGTTTG | 57.291 | 42.857 | 0.00 | 0.00 | 0.00 | 2.93 |
60 | 61 | 5.838531 | TTTACATGACCCGTGAAAAGTTT | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
61 | 62 | 5.221165 | CCTTTTACATGACCCGTGAAAAGTT | 60.221 | 40.000 | 0.00 | 0.00 | 32.46 | 2.66 |
62 | 63 | 4.277423 | CCTTTTACATGACCCGTGAAAAGT | 59.723 | 41.667 | 0.00 | 0.00 | 32.46 | 2.66 |
63 | 64 | 4.277423 | ACCTTTTACATGACCCGTGAAAAG | 59.723 | 41.667 | 0.00 | 3.86 | 33.17 | 2.27 |
64 | 65 | 4.208746 | ACCTTTTACATGACCCGTGAAAA | 58.791 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
65 | 66 | 3.816523 | GACCTTTTACATGACCCGTGAAA | 59.183 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
66 | 67 | 3.404899 | GACCTTTTACATGACCCGTGAA | 58.595 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
67 | 68 | 2.289819 | GGACCTTTTACATGACCCGTGA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
68 | 69 | 2.081462 | GGACCTTTTACATGACCCGTG | 58.919 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
69 | 70 | 1.338389 | CGGACCTTTTACATGACCCGT | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
70 | 71 | 1.066716 | TCGGACCTTTTACATGACCCG | 60.067 | 52.381 | 0.00 | 0.00 | 37.29 | 5.28 |
71 | 72 | 2.353323 | GTCGGACCTTTTACATGACCC | 58.647 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
72 | 73 | 1.997606 | CGTCGGACCTTTTACATGACC | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
73 | 74 | 2.921754 | CTCGTCGGACCTTTTACATGAC | 59.078 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
86 | 87 | 3.508793 | GGATCCCATATAAACTCGTCGGA | 59.491 | 47.826 | 0.00 | 0.00 | 0.00 | 4.55 |
200 | 201 | 7.173863 | TCATAGTGACAAAAACGTCTTCTTC | 57.826 | 36.000 | 0.00 | 0.00 | 36.82 | 2.87 |
233 | 234 | 7.435488 | ACAATCTTAAGATGGACGAAGTTATCG | 59.565 | 37.037 | 24.06 | 0.00 | 45.10 | 2.92 |
251 | 252 | 4.330944 | ACTGAACCGACACACAATCTTA | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
254 | 255 | 4.495422 | AGATACTGAACCGACACACAATC | 58.505 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
259 | 260 | 4.219725 | TCAATGAGATACTGAACCGACACA | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
260 | 261 | 4.744570 | TCAATGAGATACTGAACCGACAC | 58.255 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
303 | 305 | 1.540267 | ACACGCACGAACACTCTAGAT | 59.460 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
386 | 388 | 3.044305 | GGACGCCTGTGCACACTC | 61.044 | 66.667 | 17.42 | 9.46 | 36.29 | 3.51 |
405 | 435 | 7.361127 | GCTTGGTTTACTTCCTTTTTCTCTAC | 58.639 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
534 | 580 | 4.131376 | CGCATCGCCTTTCTCCAT | 57.869 | 55.556 | 0.00 | 0.00 | 0.00 | 3.41 |
545 | 591 | 2.126696 | ATCGAGATCCGCGCATCG | 60.127 | 61.111 | 8.75 | 9.05 | 38.37 | 3.84 |
628 | 678 | 7.500892 | ACTCCACTCTATTCTGTGTCTGTATAG | 59.499 | 40.741 | 0.00 | 0.00 | 32.76 | 1.31 |
637 | 705 | 7.867305 | TTCTAGTACTCCACTCTATTCTGTG | 57.133 | 40.000 | 0.00 | 0.00 | 38.80 | 3.66 |
666 | 738 | 9.804547 | TCAATTTTATTTTATTTTTGCACGAGC | 57.195 | 25.926 | 0.00 | 0.00 | 42.57 | 5.03 |
684 | 756 | 9.959721 | AAGAAATAGCAGTACTCCTCAATTTTA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
685 | 757 | 8.870075 | AAGAAATAGCAGTACTCCTCAATTTT | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
686 | 758 | 8.870075 | AAAGAAATAGCAGTACTCCTCAATTT | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
688 | 760 | 8.870075 | AAAAAGAAATAGCAGTACTCCTCAAT | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
710 | 782 | 5.333798 | CGATTAGTGCTCCTGTTTCGAAAAA | 60.334 | 40.000 | 13.10 | 6.34 | 0.00 | 1.94 |
711 | 783 | 4.151689 | CGATTAGTGCTCCTGTTTCGAAAA | 59.848 | 41.667 | 13.10 | 2.56 | 0.00 | 2.29 |
712 | 784 | 3.678072 | CGATTAGTGCTCCTGTTTCGAAA | 59.322 | 43.478 | 6.47 | 6.47 | 0.00 | 3.46 |
713 | 785 | 3.057104 | TCGATTAGTGCTCCTGTTTCGAA | 60.057 | 43.478 | 0.00 | 0.00 | 30.95 | 3.71 |
714 | 786 | 2.490509 | TCGATTAGTGCTCCTGTTTCGA | 59.509 | 45.455 | 0.00 | 0.00 | 31.22 | 3.71 |
715 | 787 | 2.876091 | TCGATTAGTGCTCCTGTTTCG | 58.124 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
716 | 788 | 5.447818 | CCATTTCGATTAGTGCTCCTGTTTC | 60.448 | 44.000 | 0.00 | 0.00 | 0.00 | 2.78 |
717 | 789 | 4.396166 | CCATTTCGATTAGTGCTCCTGTTT | 59.604 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
718 | 790 | 3.941483 | CCATTTCGATTAGTGCTCCTGTT | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
719 | 791 | 3.055094 | ACCATTTCGATTAGTGCTCCTGT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
720 | 792 | 3.535561 | ACCATTTCGATTAGTGCTCCTG | 58.464 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
721 | 793 | 3.914426 | ACCATTTCGATTAGTGCTCCT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 3.69 |
722 | 794 | 3.938963 | TCAACCATTTCGATTAGTGCTCC | 59.061 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
723 | 795 | 5.351465 | TCTTCAACCATTTCGATTAGTGCTC | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
724 | 796 | 5.245531 | TCTTCAACCATTTCGATTAGTGCT | 58.754 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
725 | 797 | 5.545658 | TCTTCAACCATTTCGATTAGTGC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
726 | 798 | 6.519761 | CGTTTCTTCAACCATTTCGATTAGTG | 59.480 | 38.462 | 0.00 | 0.00 | 30.65 | 2.74 |
727 | 799 | 6.348213 | CCGTTTCTTCAACCATTTCGATTAGT | 60.348 | 38.462 | 0.00 | 0.00 | 30.65 | 2.24 |
728 | 800 | 6.021596 | CCGTTTCTTCAACCATTTCGATTAG | 58.978 | 40.000 | 0.00 | 0.00 | 30.65 | 1.73 |
729 | 801 | 5.701750 | TCCGTTTCTTCAACCATTTCGATTA | 59.298 | 36.000 | 0.00 | 0.00 | 30.65 | 1.75 |
730 | 802 | 4.517453 | TCCGTTTCTTCAACCATTTCGATT | 59.483 | 37.500 | 0.00 | 0.00 | 30.65 | 3.34 |
731 | 803 | 4.069304 | TCCGTTTCTTCAACCATTTCGAT | 58.931 | 39.130 | 0.00 | 0.00 | 30.65 | 3.59 |
800 | 872 | 2.430367 | GAGCGGGTTGGTGAGGTT | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 3.50 |
809 | 881 | 3.986116 | GAGGGAGAGGGAGCGGGTT | 62.986 | 68.421 | 0.00 | 0.00 | 0.00 | 4.11 |
985 | 1074 | 1.481772 | AGCCATCTCTTCTCACTCTGC | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1191 | 1292 | 0.173481 | CATCGACAGTCACGGATGGT | 59.827 | 55.000 | 0.41 | 0.00 | 0.00 | 3.55 |
1228 | 1329 | 1.590238 | CGTGAAATTAGAGGCGAGCAG | 59.410 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
1341 | 1448 | 6.351202 | GGCCCCCGTTAAAATAAATAAACAGT | 60.351 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
1349 | 1456 | 1.005215 | TCCGGCCCCCGTTAAAATAAA | 59.995 | 47.619 | 0.00 | 0.00 | 46.80 | 1.40 |
1350 | 1457 | 0.622665 | TCCGGCCCCCGTTAAAATAA | 59.377 | 50.000 | 0.00 | 0.00 | 46.80 | 1.40 |
1351 | 1458 | 0.180878 | CTCCGGCCCCCGTTAAAATA | 59.819 | 55.000 | 0.00 | 0.00 | 46.80 | 1.40 |
1352 | 1459 | 1.077285 | CTCCGGCCCCCGTTAAAAT | 60.077 | 57.895 | 0.00 | 0.00 | 46.80 | 1.82 |
1384 | 1491 | 9.537192 | AATCGAGATACTAGATTATACGAGAGG | 57.463 | 37.037 | 0.00 | 0.00 | 34.88 | 3.69 |
1466 | 1576 | 3.897325 | TCATGCCGTATACTCGAATGAC | 58.103 | 45.455 | 0.56 | 0.00 | 32.90 | 3.06 |
1483 | 2474 | 1.464687 | CGAGCTGCGGAAAAACTCATG | 60.465 | 52.381 | 0.00 | 0.00 | 36.03 | 3.07 |
1556 | 2547 | 1.972660 | GATTGGGTAGCAGCGGAGGT | 61.973 | 60.000 | 0.00 | 0.00 | 41.48 | 3.85 |
1585 | 2577 | 2.821969 | CTGCAAGTGGCCTAAAGTCAAT | 59.178 | 45.455 | 3.32 | 0.00 | 43.89 | 2.57 |
1617 | 2609 | 8.668653 | TGTGGGGAAAATATGATACTGTATGAT | 58.331 | 33.333 | 4.79 | 4.99 | 0.00 | 2.45 |
1618 | 2610 | 8.040002 | TGTGGGGAAAATATGATACTGTATGA | 57.960 | 34.615 | 4.79 | 0.00 | 0.00 | 2.15 |
1619 | 2611 | 8.868522 | ATGTGGGGAAAATATGATACTGTATG | 57.131 | 34.615 | 4.79 | 0.00 | 0.00 | 2.39 |
1620 | 2612 | 8.109634 | GGATGTGGGGAAAATATGATACTGTAT | 58.890 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1621 | 2613 | 7.073088 | TGGATGTGGGGAAAATATGATACTGTA | 59.927 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1623 | 2615 | 6.207417 | GTGGATGTGGGGAAAATATGATACTG | 59.793 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
1624 | 2616 | 6.306987 | GTGGATGTGGGGAAAATATGATACT | 58.693 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
1625 | 2617 | 5.181245 | CGTGGATGTGGGGAAAATATGATAC | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1626 | 2618 | 5.312895 | CGTGGATGTGGGGAAAATATGATA | 58.687 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
1627 | 2619 | 4.144297 | CGTGGATGTGGGGAAAATATGAT | 58.856 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
1695 | 2687 | 4.561326 | CGAGGTTTAGGGGAAGACGTAAAA | 60.561 | 45.833 | 0.00 | 0.00 | 33.93 | 1.52 |
1707 | 2699 | 8.395633 | CAAATCTTGTATTTACGAGGTTTAGGG | 58.604 | 37.037 | 13.41 | 2.21 | 44.95 | 3.53 |
1744 | 2737 | 7.750903 | GCACTAACACATCTAGAACAAATTTCC | 59.249 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
1746 | 2739 | 8.396272 | AGCACTAACACATCTAGAACAAATTT | 57.604 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1758 | 2751 | 4.116747 | ACTAGCAGAGCACTAACACATC | 57.883 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
1772 | 2779 | 3.693085 | TCAAGGTACCTACGAACTAGCAG | 59.307 | 47.826 | 16.67 | 0.00 | 0.00 | 4.24 |
1797 | 2804 | 5.680594 | TGGGATTTGCTGCAAGATTAATT | 57.319 | 34.783 | 15.39 | 0.00 | 34.07 | 1.40 |
1821 | 2828 | 4.380973 | GCTCACACTGTATACTGCTTGAGA | 60.381 | 45.833 | 27.84 | 16.33 | 33.06 | 3.27 |
1882 | 2889 | 0.400594 | AAGAGTAACAGGGTGGGTGC | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1919 | 2932 | 2.423947 | GGGCACATCCAGATCCAATCTT | 60.424 | 50.000 | 0.00 | 0.00 | 37.58 | 2.40 |
2002 | 3073 | 7.829211 | TGATAAGAAACAAGTCAAAGGATAGGG | 59.171 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
2035 | 3151 | 8.374327 | TCAAGCAAATCTGATAGATGTATGTG | 57.626 | 34.615 | 0.00 | 0.00 | 34.65 | 3.21 |
2036 | 3152 | 9.000486 | CATCAAGCAAATCTGATAGATGTATGT | 58.000 | 33.333 | 0.00 | 0.00 | 34.65 | 2.29 |
2048 | 3164 | 5.297776 | CCTTACCTACCATCAAGCAAATCTG | 59.702 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2060 | 3176 | 7.701257 | ATTATTACCACACCTTACCTACCAT | 57.299 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2068 | 3184 | 6.211272 | TCCACCCTATTATTACCACACCTTA | 58.789 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2092 | 3208 | 3.942130 | GCCTCTTGCAAACCTTAACAT | 57.058 | 42.857 | 0.00 | 0.00 | 40.77 | 2.71 |
2110 | 3226 | 5.486526 | CCTCATACTGGAAGAGAATATGCC | 58.513 | 45.833 | 0.00 | 0.00 | 37.43 | 4.40 |
2135 | 3251 | 1.171308 | CCATGAGCAACACAGGGAAG | 58.829 | 55.000 | 0.00 | 0.00 | 40.97 | 3.46 |
2190 | 3306 | 3.356290 | CTTGGGACTCTTGGGTAAATGG | 58.644 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2195 | 3311 | 0.690762 | GTGCTTGGGACTCTTGGGTA | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2201 | 3317 | 1.059098 | TCACATGTGCTTGGGACTCT | 58.941 | 50.000 | 21.38 | 0.00 | 0.00 | 3.24 |
2214 | 3330 | 5.152097 | GTCAACTTTCTGAGCATTCACATG | 58.848 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
2215 | 3331 | 4.823442 | TGTCAACTTTCTGAGCATTCACAT | 59.177 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
2216 | 3332 | 4.198530 | TGTCAACTTTCTGAGCATTCACA | 58.801 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
2217 | 3333 | 4.781071 | CTGTCAACTTTCTGAGCATTCAC | 58.219 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2218 | 3334 | 3.251729 | GCTGTCAACTTTCTGAGCATTCA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2219 | 3335 | 3.251729 | TGCTGTCAACTTTCTGAGCATTC | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
2251 | 3368 | 1.898472 | AGATGCTGCTGTAGTGACTGT | 59.102 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
2255 | 3436 | 4.210331 | TCTATGAGATGCTGCTGTAGTGA | 58.790 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2447 | 3686 | 3.510360 | TGAGGGGTAGAAAAGAGAGAACG | 59.490 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
2485 | 3725 | 0.527113 | TGCAAAAGCATCATGACCCG | 59.473 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2572 | 3829 | 4.157840 | GGTACAATTTAAGCCCAAGTGGAG | 59.842 | 45.833 | 0.00 | 0.00 | 37.39 | 3.86 |
2590 | 3852 | 5.541101 | TGTTTCTAGTAAAGGCTCAGGTACA | 59.459 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2686 | 3959 | 5.801947 | GGCAGCTAACAATTAGACAACATTG | 59.198 | 40.000 | 0.00 | 0.00 | 35.20 | 2.82 |
2688 | 3961 | 4.094887 | CGGCAGCTAACAATTAGACAACAT | 59.905 | 41.667 | 0.00 | 0.00 | 35.20 | 2.71 |
2689 | 3962 | 3.435327 | CGGCAGCTAACAATTAGACAACA | 59.565 | 43.478 | 0.00 | 0.00 | 35.20 | 3.33 |
2690 | 3963 | 3.435671 | ACGGCAGCTAACAATTAGACAAC | 59.564 | 43.478 | 0.00 | 0.00 | 35.20 | 3.32 |
2691 | 3964 | 3.670625 | ACGGCAGCTAACAATTAGACAA | 58.329 | 40.909 | 0.00 | 0.00 | 35.20 | 3.18 |
2692 | 3965 | 3.056107 | AGACGGCAGCTAACAATTAGACA | 60.056 | 43.478 | 0.00 | 0.00 | 35.20 | 3.41 |
2693 | 3966 | 3.307242 | CAGACGGCAGCTAACAATTAGAC | 59.693 | 47.826 | 0.00 | 0.00 | 35.20 | 2.59 |
2694 | 3967 | 3.521560 | CAGACGGCAGCTAACAATTAGA | 58.478 | 45.455 | 0.00 | 0.00 | 35.20 | 2.10 |
2695 | 3968 | 2.609459 | CCAGACGGCAGCTAACAATTAG | 59.391 | 50.000 | 0.00 | 0.00 | 36.32 | 1.73 |
2712 | 3989 | 7.618019 | ACTTGACTCCTAATATAATGCCAGA | 57.382 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2733 | 4010 | 8.229253 | ACGAAAACTCCAAAAAGGTATAACTT | 57.771 | 30.769 | 0.00 | 0.00 | 39.02 | 2.66 |
2734 | 4011 | 7.499895 | TGACGAAAACTCCAAAAAGGTATAACT | 59.500 | 33.333 | 0.00 | 0.00 | 39.02 | 2.24 |
2834 | 4431 | 3.247648 | ACTCATGTTTTTGTCTTCCGACG | 59.752 | 43.478 | 0.00 | 0.00 | 43.21 | 5.12 |
2976 | 4575 | 6.679542 | TGATTCTGAAGGGAGTATGGTACTA | 58.320 | 40.000 | 0.00 | 0.00 | 39.59 | 1.82 |
2993 | 4592 | 9.775854 | AATAGAACCAGAGTTATGATGATTCTG | 57.224 | 33.333 | 3.23 | 3.23 | 35.94 | 3.02 |
3273 | 4872 | 2.989824 | AGGTGCGCCTCGTACACT | 60.990 | 61.111 | 14.67 | 0.00 | 42.67 | 3.55 |
3320 | 4919 | 1.831652 | AAGGTCCGCAAGACTGAGGG | 61.832 | 60.000 | 4.07 | 0.00 | 45.54 | 4.30 |
3384 | 4983 | 0.098376 | GGTACGCGTCGAACAGAGAT | 59.902 | 55.000 | 18.63 | 0.00 | 0.00 | 2.75 |
3533 | 5132 | 0.966179 | ACTCGTACAGGCACACATCA | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3583 | 5182 | 0.102844 | GCAAGCACAAGCCTGAACAA | 59.897 | 50.000 | 0.00 | 0.00 | 43.56 | 2.83 |
3639 | 5239 | 8.807581 | GCACAATTTATTATTAAACCAGAGCAC | 58.192 | 33.333 | 0.00 | 0.00 | 30.33 | 4.40 |
3728 | 5328 | 3.647636 | AGGATACAGAGGCAGCTAAAGA | 58.352 | 45.455 | 0.00 | 0.00 | 41.41 | 2.52 |
3729 | 5329 | 4.414337 | AAGGATACAGAGGCAGCTAAAG | 57.586 | 45.455 | 0.00 | 0.00 | 41.41 | 1.85 |
3763 | 5363 | 2.037381 | GTCTTCCGAAACAGACTCCCTT | 59.963 | 50.000 | 0.00 | 0.00 | 37.12 | 3.95 |
3807 | 5407 | 5.243730 | CACAAACAGGTTCCCAATCTTATGT | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3829 | 5429 | 3.891049 | ACTTAGGAGGATCAAATGGCAC | 58.109 | 45.455 | 0.00 | 0.00 | 36.25 | 5.01 |
3846 | 5446 | 3.687698 | GGCCGCTGAAACTATTCAACTTA | 59.312 | 43.478 | 0.00 | 0.00 | 44.64 | 2.24 |
3861 | 5461 | 3.741476 | GGTGCTCTTTGGCCGCTG | 61.741 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
3863 | 5463 | 1.103398 | ATATGGTGCTCTTTGGCCGC | 61.103 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
3889 | 5715 | 6.183361 | TGGCCGTTGAAACTATCCAATATAGA | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
3946 | 5772 | 2.947652 | CCATCGTGAAGAAGCATTGGAT | 59.052 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3963 | 5789 | 3.942829 | TCCTCTGAACAATGACACCATC | 58.057 | 45.455 | 0.00 | 0.00 | 31.40 | 3.51 |
4084 | 5910 | 2.066700 | TTGTGCATGTCAGAGGCCCA | 62.067 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
4094 | 5920 | 3.678289 | TCATCTAAGCACTTGTGCATGT | 58.322 | 40.909 | 24.82 | 13.35 | 37.25 | 3.21 |
4103 | 5929 | 3.772025 | ACTTAGCACCTCATCTAAGCACT | 59.228 | 43.478 | 8.44 | 0.00 | 43.27 | 4.40 |
4118 | 5944 | 1.541310 | CGGGACACCCTCACTTAGCA | 61.541 | 60.000 | 5.27 | 0.00 | 42.67 | 3.49 |
4124 | 5950 | 1.304713 | TAGTCCGGGACACCCTCAC | 60.305 | 63.158 | 27.87 | 0.00 | 42.67 | 3.51 |
4159 | 5985 | 1.839424 | GGCCCATAGATAACATGCCC | 58.161 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
4187 | 6013 | 1.003718 | AAGCGACAACTAGTGGGCC | 60.004 | 57.895 | 1.45 | 0.00 | 32.77 | 5.80 |
4197 | 6023 | 0.178068 | GGCTATCCTCCAAGCGACAA | 59.822 | 55.000 | 0.00 | 0.00 | 39.71 | 3.18 |
4198 | 6024 | 1.823295 | GGCTATCCTCCAAGCGACA | 59.177 | 57.895 | 0.00 | 0.00 | 39.71 | 4.35 |
4203 | 6029 | 3.297391 | GCTTCGGCTATCCTCCAAG | 57.703 | 57.895 | 0.00 | 0.00 | 38.08 | 3.61 |
4254 | 6080 | 6.585695 | TGTCCTTGAAGTATACGAAGTCTT | 57.414 | 37.500 | 0.00 | 0.00 | 43.93 | 3.01 |
4270 | 6096 | 6.189677 | TGCCGACTATTAAAATTGTCCTTG | 57.810 | 37.500 | 10.35 | 3.25 | 37.71 | 3.61 |
4281 | 6107 | 8.426489 | ACTAGGAATAAACATGCCGACTATTAA | 58.574 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4289 | 6115 | 3.243068 | GGCAACTAGGAATAAACATGCCG | 60.243 | 47.826 | 0.00 | 0.00 | 42.18 | 5.69 |
4317 | 6143 | 5.024118 | GGTGCCTAGGTCTACATATATGGT | 58.976 | 45.833 | 16.96 | 5.53 | 0.00 | 3.55 |
4324 | 6150 | 0.759436 | CGGGGTGCCTAGGTCTACAT | 60.759 | 60.000 | 11.31 | 0.00 | 0.00 | 2.29 |
4358 | 6184 | 1.217244 | CCACGGACTAAACCCCTCG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
4363 | 6189 | 0.034337 | TGTGCTCCACGGACTAAACC | 59.966 | 55.000 | 0.00 | 0.00 | 37.14 | 3.27 |
4371 | 6197 | 0.999406 | CTCGTAATTGTGCTCCACGG | 59.001 | 55.000 | 0.00 | 0.00 | 37.14 | 4.94 |
4373 | 6199 | 0.727398 | GGCTCGTAATTGTGCTCCAC | 59.273 | 55.000 | 0.00 | 0.00 | 34.56 | 4.02 |
4375 | 6201 | 1.739067 | AAGGCTCGTAATTGTGCTCC | 58.261 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4376 | 6202 | 2.866762 | CCTAAGGCTCGTAATTGTGCTC | 59.133 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4388 | 6214 | 4.281898 | TGTGTTCTAAACCCTAAGGCTC | 57.718 | 45.455 | 0.00 | 0.00 | 36.11 | 4.70 |
4402 | 6228 | 6.041409 | ACCTCGAGATCATATGATTGTGTTCT | 59.959 | 38.462 | 19.11 | 11.34 | 34.37 | 3.01 |
4422 | 6248 | 9.065734 | GGTACAGGTACAAGAGAATCTACCTCG | 62.066 | 48.148 | 11.35 | 0.00 | 46.13 | 4.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.