Multiple sequence alignment - TraesCS3D01G299800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G299800 chr3D 100.000 5427 0 0 2696 8122 414648229 414642803 0.000000e+00 10022.0
1 TraesCS3D01G299800 chr3D 100.000 2424 0 0 1 2424 414650924 414648501 0.000000e+00 4477.0
2 TraesCS3D01G299800 chr3B 93.879 4591 148 36 2696 7210 540495660 540491127 0.000000e+00 6798.0
3 TraesCS3D01G299800 chr3B 91.644 1843 92 22 553 2368 540497589 540495782 0.000000e+00 2494.0
4 TraesCS3D01G299800 chr3B 92.408 382 12 9 12 378 540498303 540497924 5.580000e-146 529.0
5 TraesCS3D01G299800 chr3B 88.623 167 11 1 7378 7536 540491039 540490873 6.430000e-46 196.0
6 TraesCS3D01G299800 chr3B 100.000 35 0 0 7792 7826 723526622 723526588 1.890000e-06 65.8
7 TraesCS3D01G299800 chr3B 94.872 39 2 0 8084 8122 540490262 540490224 2.450000e-05 62.1
8 TraesCS3D01G299800 chr3A 93.722 4428 133 66 3451 7812 535546947 535551295 0.000000e+00 6503.0
9 TraesCS3D01G299800 chr3A 89.522 2281 98 46 12 2232 535543737 535545936 0.000000e+00 2758.0
10 TraesCS3D01G299800 chr3A 93.394 772 34 6 2696 3452 535546130 535546899 0.000000e+00 1127.0
11 TraesCS3D01G299800 chr3A 96.552 116 4 0 2309 2424 535545965 535546080 8.320000e-45 193.0
12 TraesCS3D01G299800 chr3A 86.441 118 8 6 403 515 545728370 545728484 1.110000e-23 122.0
13 TraesCS3D01G299800 chr6A 83.438 320 30 9 416 730 579956439 579956138 8.030000e-70 276.0
14 TraesCS3D01G299800 chr6B 78.649 459 52 28 297 729 505247753 505248191 6.250000e-66 263.0
15 TraesCS3D01G299800 chr6B 82.781 302 32 8 435 732 656034365 656034080 1.350000e-62 252.0
16 TraesCS3D01G299800 chr6B 81.416 113 9 6 314 417 127150759 127150650 1.880000e-11 82.4
17 TraesCS3D01G299800 chr6D 82.298 322 33 11 416 732 433769342 433769040 2.910000e-64 257.0
18 TraesCS3D01G299800 chr6D 74.719 178 36 8 7656 7828 318370515 318370342 4.070000e-08 71.3
19 TraesCS3D01G299800 chr7B 81.633 343 29 16 403 729 26739084 26739408 3.760000e-63 254.0
20 TraesCS3D01G299800 chr5D 81.293 294 35 15 432 724 391983493 391983219 3.820000e-53 220.0
21 TraesCS3D01G299800 chr5B 80.952 294 36 15 432 724 472745955 472745681 1.780000e-51 215.0
22 TraesCS3D01G299800 chr1B 79.511 327 39 13 416 729 622188299 622187988 2.970000e-49 207.0
23 TraesCS3D01G299800 chr1A 83.471 242 20 7 493 729 115368654 115368428 2.970000e-49 207.0
24 TraesCS3D01G299800 chr7A 88.034 117 7 5 403 515 318259728 318259841 1.840000e-26 132.0
25 TraesCS3D01G299800 chr5A 87.288 118 7 6 403 515 175564079 175564193 2.380000e-25 128.0
26 TraesCS3D01G299800 chr2B 82.796 93 7 8 314 397 743006526 743006618 3.140000e-09 75.0
27 TraesCS3D01G299800 chr2D 97.500 40 0 1 7791 7829 394529841 394529802 5.260000e-07 67.6
28 TraesCS3D01G299800 chr7D 100.000 29 0 0 3319 3347 147821822 147821850 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G299800 chr3D 414642803 414650924 8121 True 7249.50 10022 100.0000 1 8122 2 chr3D.!!$R1 8121
1 TraesCS3D01G299800 chr3B 540490224 540498303 8079 True 2015.82 6798 92.2852 12 8122 5 chr3B.!!$R2 8110
2 TraesCS3D01G299800 chr3A 535543737 535551295 7558 False 2645.25 6503 93.2975 12 7812 4 chr3A.!!$F2 7800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 526 0.253347 TTTCCCTCATCTCCCTGCCT 60.253 55.000 0.00 0.00 0.00 4.75 F
1620 1840 1.489230 ACTACTCCCCCGGCAATAAAG 59.511 52.381 0.00 0.00 0.00 1.85 F
1901 2146 0.598065 GCCAAAACCTCAATGAGCGT 59.402 50.000 4.40 1.67 0.00 5.07 F
2863 3196 1.203523 GGCAGGCCTAGATATCTCACG 59.796 57.143 3.98 0.00 0.00 4.35 F
3349 3705 0.472471 ACCGAGTCAAAAGCCTTCCA 59.528 50.000 0.00 0.00 0.00 3.53 F
4231 4645 5.011023 TCTCAAGCTTGACAGACATGTAAGA 59.989 40.000 25.16 12.99 40.68 2.10 F
5076 5490 1.963515 ACCATCTGTGTTTTTGAGGCC 59.036 47.619 0.00 0.00 0.00 5.19 F
5185 5600 2.096657 GCAGAGGCCGAGATTTTTCTTC 59.903 50.000 0.00 0.00 0.00 2.87 F
6608 7053 0.419865 TCCACTTCCCACCCCATCTA 59.580 55.000 0.00 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1868 0.179076 GTGCAAGGCAAAGCTTTGGT 60.179 50.000 34.02 1.95 44.07 3.67 R
2785 3115 0.320374 ACCTCGAGGACAAAATCGCA 59.680 50.000 37.69 0.00 38.79 5.10 R
2967 3300 0.463116 GTTTGGTGAGGTGACGTGGT 60.463 55.000 0.00 0.00 0.00 4.16 R
4466 4880 5.301551 TGCCAGAAAAGCTGTGAAAGAAATA 59.698 36.000 0.00 0.00 43.33 1.40 R
5076 5490 5.782047 TCAAAATTGTAAGCTGGACATTGG 58.218 37.500 2.73 0.00 0.00 3.16 R
5597 6012 0.758734 CCGTGGGATTGCAGGAGATA 59.241 55.000 0.00 0.00 0.00 1.98 R
6251 6691 1.532604 CGTGCAGGTACTCCAGTCCA 61.533 60.000 0.00 0.00 34.60 4.02 R
6851 7299 2.021722 GCTGTTGTTCAGGTTGCGA 58.978 52.632 0.00 0.00 43.78 5.10 R
7848 8520 0.104120 TGTGTTCCTCAGGTGTGTCG 59.896 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 190 0.676151 CAGGCTGACTGCTTCCTTCC 60.676 60.000 9.42 0.00 40.97 3.46
258 275 2.461110 CCCCGTGCGTGTATGCTTC 61.461 63.158 0.00 0.00 35.36 3.86
271 288 2.494918 GCTTCCTAGCCGAGCGAA 59.505 61.111 0.00 0.00 41.74 4.70
450 481 1.291033 ACCAGTCCATAGGCAGGTAGA 59.709 52.381 0.00 0.00 0.00 2.59
454 488 1.413077 GTCCATAGGCAGGTAGACACC 59.587 57.143 0.00 0.00 46.19 4.16
464 498 2.365408 GGTAGACACCACTCCTTTCG 57.635 55.000 0.00 0.00 45.04 3.46
469 503 1.070289 GACACCACTCCTTTCGTCCTT 59.930 52.381 0.00 0.00 0.00 3.36
473 507 1.348036 CCACTCCTTTCGTCCTTCCTT 59.652 52.381 0.00 0.00 0.00 3.36
475 509 3.477530 CACTCCTTTCGTCCTTCCTTTT 58.522 45.455 0.00 0.00 0.00 2.27
482 516 2.266279 TCGTCCTTCCTTTTCCCTCAT 58.734 47.619 0.00 0.00 0.00 2.90
484 518 2.237392 CGTCCTTCCTTTTCCCTCATCT 59.763 50.000 0.00 0.00 0.00 2.90
492 526 0.253347 TTTCCCTCATCTCCCTGCCT 60.253 55.000 0.00 0.00 0.00 4.75
504 538 1.606531 CCTGCCTCCTTCCTCTTGG 59.393 63.158 0.00 0.00 0.00 3.61
519 553 4.282449 TCCTCTTGGATCGTCTGTTTGTTA 59.718 41.667 0.00 0.00 37.46 2.41
522 710 6.149474 CCTCTTGGATCGTCTGTTTGTTAAAT 59.851 38.462 0.00 0.00 34.57 1.40
579 798 4.984785 TGCTGTAGATTTGATATCGTGAGC 59.015 41.667 0.00 0.00 0.00 4.26
612 831 7.792374 TTGATTATTCCTTGATGAGTACTGC 57.208 36.000 0.00 0.00 0.00 4.40
671 890 7.653311 AGTTTACATGTGAAAGGATTTTGCTTC 59.347 33.333 9.11 0.00 39.27 3.86
685 904 3.713858 TTGCTTCATCAGGTGTTTGTG 57.286 42.857 0.00 0.00 0.00 3.33
686 905 2.653726 TGCTTCATCAGGTGTTTGTGT 58.346 42.857 0.00 0.00 0.00 3.72
687 906 2.618241 TGCTTCATCAGGTGTTTGTGTC 59.382 45.455 0.00 0.00 0.00 3.67
688 907 2.880890 GCTTCATCAGGTGTTTGTGTCT 59.119 45.455 0.00 0.00 0.00 3.41
689 908 3.316308 GCTTCATCAGGTGTTTGTGTCTT 59.684 43.478 0.00 0.00 0.00 3.01
690 909 4.202050 GCTTCATCAGGTGTTTGTGTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
691 910 4.898829 TCATCAGGTGTTTGTGTCTTTG 57.101 40.909 0.00 0.00 0.00 2.77
692 911 4.269183 TCATCAGGTGTTTGTGTCTTTGT 58.731 39.130 0.00 0.00 0.00 2.83
789 1008 7.812191 TGAACATTGATTTGTACTGGTTTATGC 59.188 33.333 0.00 0.00 0.00 3.14
919 1138 1.596260 CGATGGATTGCTGCTACTGTG 59.404 52.381 0.00 0.00 0.00 3.66
975 1194 6.656693 ACTTCTCATAAGGAAGTCAATTGGTG 59.343 38.462 5.42 0.00 46.96 4.17
1023 1242 2.935201 GGAGCTGATCGGCATCATTATC 59.065 50.000 27.81 14.26 38.42 1.75
1352 1571 2.902486 AGTTGCAGTTCTGGATCTCTCA 59.098 45.455 1.97 0.00 0.00 3.27
1378 1597 3.870723 TTGCTTACTTTGTGTACTGCG 57.129 42.857 0.00 0.00 35.20 5.18
1458 1678 7.459125 TCCATATCCATTTCTGGTAGCTCTTAT 59.541 37.037 0.00 0.00 43.61 1.73
1548 1768 6.522054 TCGCCTTATCCACTAATTAAGAAGG 58.478 40.000 4.57 4.57 36.18 3.46
1620 1840 1.489230 ACTACTCCCCCGGCAATAAAG 59.511 52.381 0.00 0.00 0.00 1.85
1634 1854 6.092748 CGGCAATAAAGTACTCAAATGCTTT 58.907 36.000 17.65 0.00 38.04 3.51
1646 1866 1.586154 AATGCTTTGACCCCGCGAAG 61.586 55.000 8.23 2.58 33.32 3.79
1648 1868 1.964373 GCTTTGACCCCGCGAAGAA 60.964 57.895 8.23 0.00 32.11 2.52
1696 1916 5.698545 TGTTTGCCAAAATAATTAGTGGTGC 59.301 36.000 12.02 4.82 33.43 5.01
1716 1936 5.067805 GGTGCCATAGATTTCTTTCGGAATT 59.932 40.000 0.00 0.00 33.53 2.17
1786 2006 0.861837 GATACCATCGCCTTGCTTCG 59.138 55.000 0.00 0.00 0.00 3.79
1855 2075 1.686110 GGGAGGGGTCGATGTCTGT 60.686 63.158 0.00 0.00 0.00 3.41
1901 2146 0.598065 GCCAAAACCTCAATGAGCGT 59.402 50.000 4.40 1.67 0.00 5.07
1925 2170 2.763248 CGTACTCACGCTTGCACG 59.237 61.111 0.00 0.00 42.05 5.34
2000 2245 4.167892 TCCACACCCTATTTTGGATAGCAT 59.832 41.667 0.00 0.00 33.02 3.79
2050 2295 4.192317 GAGCCTACACTTTCCGAATGATT 58.808 43.478 1.22 0.00 0.00 2.57
2060 2305 7.169645 ACACTTTCCGAATGATTTTGTTCATTG 59.830 33.333 4.52 0.00 44.35 2.82
2105 2350 1.915078 AAGCCTTGTATGCCTCCGCT 61.915 55.000 0.00 0.00 35.36 5.52
2231 2489 1.210967 ACGTGGTTCCAAGAAAGACCA 59.789 47.619 11.33 0.00 39.72 4.02
2275 2533 1.961394 CCAAGCATCCTCATTCATGGG 59.039 52.381 0.00 0.00 0.00 4.00
2280 2538 2.662866 CATCCTCATTCATGGGCAAGT 58.337 47.619 0.00 0.00 0.00 3.16
2298 2556 4.929211 GCAAGTTGACTTTCCACTTTTTGT 59.071 37.500 7.16 0.00 33.11 2.83
2305 2563 3.513515 ACTTTCCACTTTTTGTGCTTGGA 59.486 39.130 0.00 0.00 44.92 3.53
2724 3054 3.770666 TCGTTTGTGAGAGGATCGATTC 58.229 45.455 0.00 0.00 42.67 2.52
2772 3102 2.514824 GTTCATGCCCTCCCGAGC 60.515 66.667 0.00 0.00 0.00 5.03
2863 3196 1.203523 GGCAGGCCTAGATATCTCACG 59.796 57.143 3.98 0.00 0.00 4.35
2882 3215 1.671850 CGTGGAAGGAAGTGCGTATGT 60.672 52.381 0.00 0.00 0.00 2.29
2896 3229 1.306911 TATGTCAGGCAGCCCCTCA 60.307 57.895 8.22 5.09 44.09 3.86
2904 3237 1.452833 GCAGCCCCTCAAGGATGTC 60.453 63.158 0.00 0.00 45.36 3.06
2967 3300 4.737352 GCTCTTGTGGAAGTTTGATTGCAA 60.737 41.667 0.00 0.00 31.94 4.08
3038 3371 2.760092 TCTTCCTTTATTGGTGCCATGC 59.240 45.455 0.00 0.00 0.00 4.06
3065 3398 1.325355 CGTGTCATCCGGGTATAGGT 58.675 55.000 0.00 0.00 0.00 3.08
3150 3492 1.000274 GAGAATTTGTTGCAGCGGGTT 60.000 47.619 0.00 0.00 0.00 4.11
3162 3504 2.575532 CAGCGGGTTGATGGTAATGAT 58.424 47.619 0.00 0.00 0.00 2.45
3172 3516 2.689553 TGGTAATGATGAAGCAGCGA 57.310 45.000 0.00 0.00 0.00 4.93
3223 3567 1.133025 GCCATGCGTAATTGAAGTGCT 59.867 47.619 0.00 0.00 0.00 4.40
3225 3569 2.419673 CCATGCGTAATTGAAGTGCTCA 59.580 45.455 0.00 0.00 0.00 4.26
3226 3570 3.486375 CCATGCGTAATTGAAGTGCTCAG 60.486 47.826 0.00 0.00 34.81 3.35
3349 3705 0.472471 ACCGAGTCAAAAGCCTTCCA 59.528 50.000 0.00 0.00 0.00 3.53
3398 3754 6.329496 TGGAGTTTTGTTTTGTGAAGATGTC 58.671 36.000 0.00 0.00 0.00 3.06
3751 4164 7.762588 TGGAATAGCTACTGTATCTTACTCC 57.237 40.000 0.00 2.53 0.00 3.85
4231 4645 5.011023 TCTCAAGCTTGACAGACATGTAAGA 59.989 40.000 25.16 12.99 40.68 2.10
4283 4697 6.544928 TTTCTGTCCACAAGAGCTCATATA 57.455 37.500 17.77 0.00 0.00 0.86
4288 4702 9.533831 TCTGTCCACAAGAGCTCATATATATTA 57.466 33.333 17.77 0.00 0.00 0.98
4915 5329 6.895040 GTCTTGTTCATTAGCTTATCGAAACG 59.105 38.462 0.00 0.00 0.00 3.60
4938 5352 7.388437 ACGAAGATGTGGTTTACTGGTTTATA 58.612 34.615 0.00 0.00 0.00 0.98
4952 5366 7.672983 ACTGGTTTATATATGCATACACAGC 57.327 36.000 8.99 2.42 0.00 4.40
5076 5490 1.963515 ACCATCTGTGTTTTTGAGGCC 59.036 47.619 0.00 0.00 0.00 5.19
5094 5508 2.102578 GCCCAATGTCCAGCTTACAAT 58.897 47.619 2.90 0.00 0.00 2.71
5131 5545 3.991773 GTGTTGCATTGCATTGAACTGAT 59.008 39.130 12.95 0.00 38.76 2.90
5185 5600 2.096657 GCAGAGGCCGAGATTTTTCTTC 59.903 50.000 0.00 0.00 0.00 2.87
5186 5601 2.349886 CAGAGGCCGAGATTTTTCTTCG 59.650 50.000 0.00 0.00 0.00 3.79
5501 5916 2.678836 TGGGTTCTGTACAACACAAACG 59.321 45.455 0.00 0.00 36.72 3.60
5585 6000 9.063615 GGTACTTTCTTTCTTCTTAACCAATCA 57.936 33.333 0.00 0.00 0.00 2.57
5612 6027 5.009410 CAGTTGATTTATCTCCTGCAATCCC 59.991 44.000 0.00 0.00 0.00 3.85
5709 6124 7.610692 GGACCTTCATTTAGGCTTAGTAACTTT 59.389 37.037 0.00 0.00 38.99 2.66
5876 6307 9.661954 AATCCTGAGTAAAGAATAGATAGACCA 57.338 33.333 0.00 0.00 0.00 4.02
5877 6308 9.661954 ATCCTGAGTAAAGAATAGATAGACCAA 57.338 33.333 0.00 0.00 0.00 3.67
5878 6309 9.137459 TCCTGAGTAAAGAATAGATAGACCAAG 57.863 37.037 0.00 0.00 0.00 3.61
5879 6310 9.137459 CCTGAGTAAAGAATAGATAGACCAAGA 57.863 37.037 0.00 0.00 0.00 3.02
6251 6691 2.279517 GCTATAGGCACAGCGCGT 60.280 61.111 8.43 0.00 43.84 6.01
6564 7004 1.066858 TGGAGGAAGAAGATGACGTGC 60.067 52.381 0.00 0.00 0.00 5.34
6605 7050 0.776080 AACTCCACTTCCCACCCCAT 60.776 55.000 0.00 0.00 0.00 4.00
6606 7051 1.208165 ACTCCACTTCCCACCCCATC 61.208 60.000 0.00 0.00 0.00 3.51
6607 7052 0.916358 CTCCACTTCCCACCCCATCT 60.916 60.000 0.00 0.00 0.00 2.90
6608 7053 0.419865 TCCACTTCCCACCCCATCTA 59.580 55.000 0.00 0.00 0.00 1.98
6609 7054 1.203505 TCCACTTCCCACCCCATCTAA 60.204 52.381 0.00 0.00 0.00 2.10
6633 7078 4.604843 TTGATTGATTCAAGCTGCTACG 57.395 40.909 15.07 0.00 39.44 3.51
6689 7137 5.220381 CAACAACTTAAGAGACTCGCACTA 58.780 41.667 10.09 0.00 0.00 2.74
6719 7167 6.449698 ACAAAAAGACATGCATTCTTGGTAG 58.550 36.000 18.60 13.43 33.46 3.18
6721 7169 6.506500 AAAAGACATGCATTCTTGGTAGAG 57.493 37.500 18.60 0.00 33.46 2.43
6723 7171 5.939764 AGACATGCATTCTTGGTAGAGTA 57.060 39.130 0.00 0.00 0.00 2.59
6724 7172 5.911752 AGACATGCATTCTTGGTAGAGTAG 58.088 41.667 0.00 0.00 0.00 2.57
6725 7173 4.446371 ACATGCATTCTTGGTAGAGTAGC 58.554 43.478 0.00 0.00 0.00 3.58
6726 7174 4.080919 ACATGCATTCTTGGTAGAGTAGCA 60.081 41.667 0.00 0.00 37.52 3.49
6727 7175 3.861840 TGCATTCTTGGTAGAGTAGCAC 58.138 45.455 0.00 0.00 35.67 4.40
6728 7176 3.515502 TGCATTCTTGGTAGAGTAGCACT 59.484 43.478 0.00 0.00 35.67 4.40
6729 7177 4.709886 TGCATTCTTGGTAGAGTAGCACTA 59.290 41.667 0.00 0.00 35.67 2.74
6730 7178 5.044558 GCATTCTTGGTAGAGTAGCACTAC 58.955 45.833 0.00 0.00 39.32 2.73
6731 7179 5.394224 GCATTCTTGGTAGAGTAGCACTACA 60.394 44.000 10.30 0.00 41.08 2.74
6732 7180 5.640189 TTCTTGGTAGAGTAGCACTACAC 57.360 43.478 10.30 4.05 41.08 2.90
6733 7181 3.688185 TCTTGGTAGAGTAGCACTACACG 59.312 47.826 10.30 0.00 41.08 4.49
6745 7193 5.443185 AGCACTACACGACACTAGTTAAA 57.557 39.130 0.00 0.00 0.00 1.52
6758 7206 9.326413 CGACACTAGTTAAAATAAATCCTGGAT 57.674 33.333 2.57 2.57 0.00 3.41
6763 7211 3.733443 AAAATAAATCCTGGATGCCGC 57.267 42.857 10.54 0.00 0.00 6.53
6787 7235 7.413767 CGCAGCATATGATCTAAAGCATAATGT 60.414 37.037 6.97 0.00 37.32 2.71
7073 7521 4.367023 CGGTTCGACTGGGGCGAA 62.367 66.667 3.99 3.99 44.48 4.70
7144 7596 1.372251 CGTCAGACTGCTCGCTGTT 60.372 57.895 0.00 0.00 33.90 3.16
7195 7654 5.692204 GGTCGGAGTCTTGTATATTGTGATG 59.308 44.000 0.00 0.00 0.00 3.07
7230 7689 6.036083 GTCAATGTTGCTGACTGTATATTCGT 59.964 38.462 0.00 0.00 40.10 3.85
7232 7691 4.816392 TGTTGCTGACTGTATATTCGTGT 58.184 39.130 0.00 0.00 0.00 4.49
7241 7700 3.527533 TGTATATTCGTGTTGCCTCCAC 58.472 45.455 0.00 0.00 0.00 4.02
7259 7718 2.926838 CCACGAAACCTTGGTTTTTGTG 59.073 45.455 26.71 26.71 43.63 3.33
7260 7719 2.347150 CACGAAACCTTGGTTTTTGTGC 59.653 45.455 24.57 11.94 40.03 4.57
7270 7731 1.826921 TTTTTGTGCCGGGGCGTTA 60.827 52.632 2.18 0.00 45.51 3.18
7283 7744 1.605058 GGCGTTAGCTCTGGACTGGA 61.605 60.000 0.00 0.00 44.37 3.86
7289 7750 2.587247 GCTCTGGACTGGACAGGCA 61.587 63.158 7.57 0.00 38.52 4.75
7350 7818 5.812127 GTGGCTTGAAATGAAAGTTGAAACT 59.188 36.000 0.00 0.00 42.04 2.66
7376 7844 2.684843 GCACCTTCTGCTTGGCGAG 61.685 63.158 0.00 0.00 43.33 5.03
7497 7993 4.722700 GCTTTGCTCCAGGGCCGA 62.723 66.667 0.00 0.00 0.00 5.54
7539 8035 4.485163 CAGCAATAACTTTTGTACTGGGC 58.515 43.478 0.00 0.00 0.00 5.36
7544 8094 3.430333 AACTTTTGTACTGGGCAAACG 57.570 42.857 0.00 0.00 35.82 3.60
7561 8111 1.227764 CGAGATGGTGGGATGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
7562 8112 1.527844 GAGATGGTGGGATGCAGGC 60.528 63.158 0.00 0.00 0.00 4.85
7579 8129 1.718757 GGCGTGGCTATCTTTGCTGG 61.719 60.000 0.00 0.00 0.00 4.85
7584 8134 1.340017 TGGCTATCTTTGCTGGGTGTC 60.340 52.381 0.00 0.00 0.00 3.67
7585 8135 1.340017 GGCTATCTTTGCTGGGTGTCA 60.340 52.381 0.00 0.00 0.00 3.58
7586 8136 1.740025 GCTATCTTTGCTGGGTGTCAC 59.260 52.381 0.00 0.00 0.00 3.67
7587 8137 2.359900 CTATCTTTGCTGGGTGTCACC 58.640 52.381 14.13 14.13 37.60 4.02
7591 8141 2.107378 TCTTTGCTGGGTGTCACCATAA 59.893 45.455 23.48 9.41 41.02 1.90
7593 8143 2.897271 TGCTGGGTGTCACCATAATT 57.103 45.000 23.48 0.00 41.02 1.40
7596 8146 2.620367 GCTGGGTGTCACCATAATTGGA 60.620 50.000 23.48 0.00 46.92 3.53
7597 8147 3.282021 CTGGGTGTCACCATAATTGGAG 58.718 50.000 23.48 2.47 46.92 3.86
7598 8148 2.647299 TGGGTGTCACCATAATTGGAGT 59.353 45.455 23.48 0.00 46.92 3.85
7599 8149 3.016736 GGGTGTCACCATAATTGGAGTG 58.983 50.000 23.48 0.00 46.92 3.51
7600 8150 3.308117 GGGTGTCACCATAATTGGAGTGA 60.308 47.826 23.48 3.07 46.92 3.41
7605 8155 4.943705 GTCACCATAATTGGAGTGACATGT 59.056 41.667 21.91 0.00 46.92 3.21
7606 8156 6.112734 GTCACCATAATTGGAGTGACATGTA 58.887 40.000 21.91 0.00 46.92 2.29
7607 8157 6.767902 GTCACCATAATTGGAGTGACATGTAT 59.232 38.462 21.91 0.00 46.92 2.29
7608 8158 6.992123 TCACCATAATTGGAGTGACATGTATC 59.008 38.462 0.00 0.00 46.92 2.24
7609 8159 6.994496 CACCATAATTGGAGTGACATGTATCT 59.006 38.462 0.00 0.00 46.92 1.98
7610 8160 8.150296 CACCATAATTGGAGTGACATGTATCTA 58.850 37.037 0.00 0.00 46.92 1.98
7611 8161 8.713971 ACCATAATTGGAGTGACATGTATCTAA 58.286 33.333 0.00 2.37 46.92 2.10
7612 8162 9.730705 CCATAATTGGAGTGACATGTATCTAAT 57.269 33.333 0.00 4.75 46.92 1.73
7617 8167 8.958119 TTGGAGTGACATGTATCTAATAAACC 57.042 34.615 0.00 0.00 0.00 3.27
7618 8168 7.506114 TGGAGTGACATGTATCTAATAAACCC 58.494 38.462 0.00 0.00 0.00 4.11
7619 8169 6.645415 GGAGTGACATGTATCTAATAAACCCG 59.355 42.308 0.00 0.00 0.00 5.28
7620 8170 7.120923 AGTGACATGTATCTAATAAACCCGT 57.879 36.000 0.00 0.00 0.00 5.28
7621 8171 8.241497 AGTGACATGTATCTAATAAACCCGTA 57.759 34.615 0.00 0.00 0.00 4.02
7622 8172 8.358148 AGTGACATGTATCTAATAAACCCGTAG 58.642 37.037 0.00 0.00 0.00 3.51
7623 8173 8.139989 GTGACATGTATCTAATAAACCCGTAGT 58.860 37.037 0.00 0.00 0.00 2.73
7624 8174 8.698210 TGACATGTATCTAATAAACCCGTAGTT 58.302 33.333 0.00 0.00 41.81 2.24
7626 8176 9.538508 ACATGTATCTAATAAACCCGTAGTTTC 57.461 33.333 0.00 0.00 45.85 2.78
7627 8177 9.537192 CATGTATCTAATAAACCCGTAGTTTCA 57.463 33.333 4.27 0.00 45.85 2.69
7629 8179 9.369904 TGTATCTAATAAACCCGTAGTTTCAAC 57.630 33.333 4.27 0.00 45.85 3.18
7630 8180 7.854557 ATCTAATAAACCCGTAGTTTCAACC 57.145 36.000 4.27 0.00 45.85 3.77
7631 8181 6.767456 TCTAATAAACCCGTAGTTTCAACCA 58.233 36.000 4.27 0.00 45.85 3.67
7632 8182 7.396418 TCTAATAAACCCGTAGTTTCAACCAT 58.604 34.615 4.27 0.00 45.85 3.55
7633 8183 5.890424 ATAAACCCGTAGTTTCAACCATG 57.110 39.130 4.27 0.00 45.85 3.66
7634 8184 2.194201 ACCCGTAGTTTCAACCATGG 57.806 50.000 11.19 11.19 0.00 3.66
7635 8185 1.459450 CCCGTAGTTTCAACCATGGG 58.541 55.000 18.09 1.49 39.83 4.00
7636 8186 1.459450 CCGTAGTTTCAACCATGGGG 58.541 55.000 18.09 8.10 41.29 4.96
7637 8187 1.003812 CCGTAGTTTCAACCATGGGGA 59.996 52.381 18.09 10.62 38.05 4.81
7638 8188 2.553466 CCGTAGTTTCAACCATGGGGAA 60.553 50.000 18.09 16.25 38.05 3.97
7639 8189 2.747446 CGTAGTTTCAACCATGGGGAAG 59.253 50.000 18.09 2.55 38.05 3.46
7640 8190 3.558321 CGTAGTTTCAACCATGGGGAAGA 60.558 47.826 18.09 5.13 38.05 2.87
7649 8199 5.046448 TCAACCATGGGGAAGATCAAATTTG 60.046 40.000 18.09 12.15 38.05 2.32
7652 8202 5.727766 ACCATGGGGAAGATCAAATTTGAAT 59.272 36.000 23.91 13.32 38.15 2.57
7686 8236 2.096799 GCTAATCAAGCGACACATGC 57.903 50.000 0.00 0.00 42.53 4.06
7688 8238 1.926510 CTAATCAAGCGACACATGCGA 59.073 47.619 0.00 0.00 37.44 5.10
7743 8293 1.686052 TGTTTGGACAAATGAGCCACC 59.314 47.619 0.34 0.00 31.49 4.61
7749 8299 2.165030 GGACAAATGAGCCACCAGATTG 59.835 50.000 0.00 0.00 0.00 2.67
7772 8442 9.654663 ATTGTCTTGGTTAGTAAGTTCATAGAC 57.345 33.333 0.00 0.00 0.00 2.59
7773 8443 8.185506 TGTCTTGGTTAGTAAGTTCATAGACA 57.814 34.615 0.00 0.00 36.79 3.41
7812 8484 9.276590 TGTGATTAATAAAGCTAGTCATGATGG 57.723 33.333 0.00 0.00 0.00 3.51
7813 8485 9.277783 GTGATTAATAAAGCTAGTCATGATGGT 57.722 33.333 0.00 0.00 0.00 3.55
7818 8490 8.814038 AATAAAGCTAGTCATGATGGTCTTTT 57.186 30.769 15.89 9.03 0.00 2.27
7824 8496 8.103305 AGCTAGTCATGATGGTCTTTTCTAAAA 58.897 33.333 0.00 0.00 0.00 1.52
7848 8520 3.059352 ACCTCTTGTCACATTACTGCC 57.941 47.619 0.00 0.00 0.00 4.85
7850 8522 2.353704 CCTCTTGTCACATTACTGCCGA 60.354 50.000 0.00 0.00 0.00 5.54
7851 8523 2.668457 CTCTTGTCACATTACTGCCGAC 59.332 50.000 0.00 0.00 0.00 4.79
7852 8524 2.036604 TCTTGTCACATTACTGCCGACA 59.963 45.455 2.83 2.83 36.72 4.35
7856 8528 0.796312 CACATTACTGCCGACACACC 59.204 55.000 0.00 0.00 0.00 4.16
7857 8529 0.685097 ACATTACTGCCGACACACCT 59.315 50.000 0.00 0.00 0.00 4.00
7859 8531 0.973632 ATTACTGCCGACACACCTGA 59.026 50.000 0.00 0.00 0.00 3.86
7869 8541 0.180406 ACACACCTGAGGAACACACC 59.820 55.000 4.99 0.00 0.00 4.16
7878 8550 1.228154 GGAACACACCTCCACCCAC 60.228 63.158 0.00 0.00 32.77 4.61
7879 8551 1.228154 GAACACACCTCCACCCACC 60.228 63.158 0.00 0.00 0.00 4.61
7880 8552 1.990160 GAACACACCTCCACCCACCA 61.990 60.000 0.00 0.00 0.00 4.17
7882 8554 1.303561 CACACCTCCACCCACCATG 60.304 63.158 0.00 0.00 0.00 3.66
7885 8557 2.044650 CCTCCACCCACCATGCAG 60.045 66.667 0.00 0.00 0.00 4.41
7886 8558 2.044650 CTCCACCCACCATGCAGG 60.045 66.667 0.00 0.00 45.67 4.85
7889 8561 4.682334 CACCCACCATGCAGGCCA 62.682 66.667 5.01 0.00 43.14 5.36
7890 8562 3.675790 ACCCACCATGCAGGCCAT 61.676 61.111 5.01 0.00 43.14 4.40
7902 8574 4.115199 GGCCATGCTCCCGGACTT 62.115 66.667 0.73 0.00 0.00 3.01
7903 8575 2.514824 GCCATGCTCCCGGACTTC 60.515 66.667 0.73 0.00 0.00 3.01
7904 8576 3.036429 GCCATGCTCCCGGACTTCT 62.036 63.158 0.73 0.00 0.00 2.85
7905 8577 1.604378 CCATGCTCCCGGACTTCTT 59.396 57.895 0.73 0.00 0.00 2.52
7907 8579 0.807667 CATGCTCCCGGACTTCTTCG 60.808 60.000 0.73 0.00 0.00 3.79
7910 8582 1.014564 GCTCCCGGACTTCTTCGTTG 61.015 60.000 0.73 0.00 0.00 4.10
7911 8583 0.601558 CTCCCGGACTTCTTCGTTGA 59.398 55.000 0.73 0.00 0.00 3.18
7912 8584 1.000506 CTCCCGGACTTCTTCGTTGAA 59.999 52.381 0.73 0.00 0.00 2.69
7914 8586 1.145803 CCGGACTTCTTCGTTGAACC 58.854 55.000 0.00 0.00 0.00 3.62
7915 8587 0.782384 CGGACTTCTTCGTTGAACCG 59.218 55.000 0.00 0.00 32.22 4.44
7916 8588 1.601162 CGGACTTCTTCGTTGAACCGA 60.601 52.381 12.78 0.00 37.61 4.69
7917 8589 2.685100 GGACTTCTTCGTTGAACCGAT 58.315 47.619 0.00 0.00 36.62 4.18
7918 8590 2.412089 GGACTTCTTCGTTGAACCGATG 59.588 50.000 0.00 0.00 36.62 3.84
7919 8591 3.314553 GACTTCTTCGTTGAACCGATGA 58.685 45.455 0.00 0.00 38.68 2.92
7920 8592 3.057734 ACTTCTTCGTTGAACCGATGAC 58.942 45.455 0.00 0.00 39.69 3.06
7921 8593 2.804697 TCTTCGTTGAACCGATGACA 57.195 45.000 0.00 0.00 36.48 3.58
7923 8595 2.035449 TCTTCGTTGAACCGATGACACT 59.965 45.455 0.00 0.00 36.48 3.55
7924 8596 2.060326 TCGTTGAACCGATGACACTC 57.940 50.000 0.00 0.00 30.63 3.51
7925 8597 1.338655 TCGTTGAACCGATGACACTCA 59.661 47.619 0.00 0.00 30.63 3.41
7927 8599 2.092681 CGTTGAACCGATGACACTCATG 59.907 50.000 0.00 0.00 37.20 3.07
7928 8600 1.725641 TGAACCGATGACACTCATGC 58.274 50.000 0.00 0.00 37.20 4.06
7929 8601 1.009829 GAACCGATGACACTCATGCC 58.990 55.000 0.00 0.00 37.20 4.40
7930 8602 0.740868 AACCGATGACACTCATGCCG 60.741 55.000 0.00 0.00 37.20 5.69
7931 8603 1.153568 CCGATGACACTCATGCCGT 60.154 57.895 0.00 0.00 37.20 5.68
7932 8604 1.148157 CCGATGACACTCATGCCGTC 61.148 60.000 0.00 0.00 37.20 4.79
7933 8605 0.458370 CGATGACACTCATGCCGTCA 60.458 55.000 12.21 12.21 43.35 4.35
7934 8606 1.284657 GATGACACTCATGCCGTCAG 58.715 55.000 14.31 0.00 42.53 3.51
7935 8607 0.610174 ATGACACTCATGCCGTCAGT 59.390 50.000 14.31 0.00 42.53 3.41
7936 8608 1.253100 TGACACTCATGCCGTCAGTA 58.747 50.000 7.37 0.00 34.83 2.74
7937 8609 1.824852 TGACACTCATGCCGTCAGTAT 59.175 47.619 7.37 0.00 34.83 2.12
7938 8610 2.196749 GACACTCATGCCGTCAGTATG 58.803 52.381 4.66 0.00 39.75 2.39
7949 8621 3.116073 TCAGTATGACCACGCGTTG 57.884 52.632 10.22 9.54 42.56 4.10
7950 8622 0.315886 TCAGTATGACCACGCGTTGT 59.684 50.000 16.65 16.65 42.56 3.32
7951 8623 1.144969 CAGTATGACCACGCGTTGTT 58.855 50.000 17.72 5.16 39.69 2.83
7952 8624 1.136363 CAGTATGACCACGCGTTGTTG 60.136 52.381 17.72 7.52 39.69 3.33
7953 8625 1.141645 GTATGACCACGCGTTGTTGA 58.858 50.000 17.72 7.92 0.00 3.18
7955 8627 0.812014 ATGACCACGCGTTGTTGACA 60.812 50.000 17.72 11.25 0.00 3.58
7956 8628 0.812014 TGACCACGCGTTGTTGACAT 60.812 50.000 17.72 0.00 0.00 3.06
7957 8629 0.384230 GACCACGCGTTGTTGACATG 60.384 55.000 17.72 0.00 0.00 3.21
7958 8630 1.092921 ACCACGCGTTGTTGACATGT 61.093 50.000 10.22 0.00 0.00 3.21
7959 8631 0.384230 CCACGCGTTGTTGACATGTC 60.384 55.000 19.27 19.27 0.00 3.06
7960 8632 0.717896 CACGCGTTGTTGACATGTCG 60.718 55.000 20.54 9.51 0.00 4.35
7961 8633 1.788203 CGCGTTGTTGACATGTCGC 60.788 57.895 20.54 17.61 37.41 5.19
7962 8634 1.278337 GCGTTGTTGACATGTCGCA 59.722 52.632 20.54 18.01 39.05 5.10
7963 8635 0.991770 GCGTTGTTGACATGTCGCAC 60.992 55.000 20.54 18.71 39.05 5.34
7964 8636 0.384230 CGTTGTTGACATGTCGCACC 60.384 55.000 20.54 13.17 0.00 5.01
7967 8639 1.218875 TGTTGACATGTCGCACCGTC 61.219 55.000 20.54 6.56 0.00 4.79
7969 8641 3.179265 GACATGTCGCACCGTCGG 61.179 66.667 10.69 10.48 0.00 4.79
7970 8642 3.620300 GACATGTCGCACCGTCGGA 62.620 63.158 20.51 0.00 0.00 4.55
7971 8643 2.880879 CATGTCGCACCGTCGGAG 60.881 66.667 20.51 12.00 0.00 4.63
7972 8644 4.796231 ATGTCGCACCGTCGGAGC 62.796 66.667 22.09 22.09 35.99 4.70
7975 8647 4.717629 TCGCACCGTCGGAGCAAG 62.718 66.667 29.12 16.36 39.20 4.01
7979 8651 4.681978 ACCGTCGGAGCAAGGCAC 62.682 66.667 20.51 0.00 0.00 5.01
7981 8653 4.680237 CGTCGGAGCAAGGCACCA 62.680 66.667 5.57 0.00 39.20 4.17
7982 8654 3.050275 GTCGGAGCAAGGCACCAC 61.050 66.667 5.57 0.00 39.20 4.16
7985 8657 2.985847 GGAGCAAGGCACCACACC 60.986 66.667 0.00 0.00 39.08 4.16
7986 8658 3.357079 GAGCAAGGCACCACACCG 61.357 66.667 0.00 0.00 0.00 4.94
7987 8659 3.825160 GAGCAAGGCACCACACCGA 62.825 63.158 0.00 0.00 0.00 4.69
7988 8660 2.672996 GCAAGGCACCACACCGAT 60.673 61.111 0.00 0.00 0.00 4.18
7989 8661 2.690778 GCAAGGCACCACACCGATC 61.691 63.158 0.00 0.00 0.00 3.69
7991 8663 0.888736 CAAGGCACCACACCGATCAA 60.889 55.000 0.00 0.00 0.00 2.57
7992 8664 0.889186 AAGGCACCACACCGATCAAC 60.889 55.000 0.00 0.00 0.00 3.18
7993 8665 1.599518 GGCACCACACCGATCAACA 60.600 57.895 0.00 0.00 0.00 3.33
7994 8666 1.574428 GCACCACACCGATCAACAC 59.426 57.895 0.00 0.00 0.00 3.32
7995 8667 1.859398 CACCACACCGATCAACACG 59.141 57.895 0.00 0.00 0.00 4.49
7996 8668 0.878523 CACCACACCGATCAACACGT 60.879 55.000 0.00 0.00 0.00 4.49
7997 8669 0.878523 ACCACACCGATCAACACGTG 60.879 55.000 15.48 15.48 0.00 4.49
8000 8672 0.179067 ACACCGATCAACACGTGGTT 60.179 50.000 21.57 8.96 41.47 3.67
8011 8683 4.445452 AACACGTGGTTGTATCGATACT 57.555 40.909 30.20 10.60 38.60 2.12
8012 8684 4.025015 ACACGTGGTTGTATCGATACTC 57.975 45.455 30.20 22.94 34.41 2.59
8013 8685 3.033873 CACGTGGTTGTATCGATACTCG 58.966 50.000 30.20 25.34 42.10 4.18
8014 8686 2.041966 CGTGGTTGTATCGATACTCGC 58.958 52.381 30.20 23.50 40.21 5.03
8015 8687 2.391879 GTGGTTGTATCGATACTCGCC 58.608 52.381 30.20 26.56 40.21 5.54
8016 8688 1.338973 TGGTTGTATCGATACTCGCCC 59.661 52.381 30.20 23.47 40.21 6.13
8017 8689 1.612463 GGTTGTATCGATACTCGCCCT 59.388 52.381 30.20 0.00 40.21 5.19
8018 8690 2.035576 GGTTGTATCGATACTCGCCCTT 59.964 50.000 30.20 0.00 40.21 3.95
8019 8691 3.254166 GGTTGTATCGATACTCGCCCTTA 59.746 47.826 30.20 9.94 40.21 2.69
8020 8692 4.261741 GGTTGTATCGATACTCGCCCTTAA 60.262 45.833 30.20 14.71 40.21 1.85
8021 8693 5.284079 GTTGTATCGATACTCGCCCTTAAA 58.716 41.667 30.20 14.10 40.21 1.52
8022 8694 5.518848 TGTATCGATACTCGCCCTTAAAA 57.481 39.130 30.20 8.15 40.21 1.52
8023 8695 5.526115 TGTATCGATACTCGCCCTTAAAAG 58.474 41.667 30.20 0.00 40.21 2.27
8024 8696 4.931661 ATCGATACTCGCCCTTAAAAGA 57.068 40.909 0.00 0.00 40.21 2.52
8025 8697 4.303086 TCGATACTCGCCCTTAAAAGAG 57.697 45.455 0.00 0.00 40.21 2.85
8026 8698 3.067742 TCGATACTCGCCCTTAAAAGAGG 59.932 47.826 0.00 0.00 40.21 3.69
8027 8699 3.067742 CGATACTCGCCCTTAAAAGAGGA 59.932 47.826 0.00 0.00 33.99 3.71
8028 8700 4.262079 CGATACTCGCCCTTAAAAGAGGAT 60.262 45.833 0.00 0.00 37.02 3.24
8029 8701 3.268023 ACTCGCCCTTAAAAGAGGATG 57.732 47.619 0.00 0.00 39.25 3.51
8030 8702 2.838202 ACTCGCCCTTAAAAGAGGATGA 59.162 45.455 0.00 0.00 39.25 2.92
8031 8703 3.198872 CTCGCCCTTAAAAGAGGATGAC 58.801 50.000 0.00 0.00 39.25 3.06
8032 8704 2.569853 TCGCCCTTAAAAGAGGATGACA 59.430 45.455 0.00 0.00 39.25 3.58
8033 8705 3.199946 TCGCCCTTAAAAGAGGATGACAT 59.800 43.478 0.00 0.00 39.25 3.06
8034 8706 3.313526 CGCCCTTAAAAGAGGATGACATG 59.686 47.826 0.00 0.00 39.25 3.21
8035 8707 4.273318 GCCCTTAAAAGAGGATGACATGT 58.727 43.478 0.00 0.00 39.25 3.21
8036 8708 5.437060 GCCCTTAAAAGAGGATGACATGTA 58.563 41.667 0.00 0.00 39.25 2.29
8037 8709 6.064717 GCCCTTAAAAGAGGATGACATGTAT 58.935 40.000 0.00 0.00 39.25 2.29
8038 8710 6.547510 GCCCTTAAAAGAGGATGACATGTATT 59.452 38.462 0.00 0.00 39.25 1.89
8039 8711 7.469181 GCCCTTAAAAGAGGATGACATGTATTG 60.469 40.741 0.00 0.00 39.25 1.90
8040 8712 7.775093 CCCTTAAAAGAGGATGACATGTATTGA 59.225 37.037 0.00 0.00 39.25 2.57
8041 8713 9.347240 CCTTAAAAGAGGATGACATGTATTGAT 57.653 33.333 0.00 0.00 39.25 2.57
8045 8717 9.553064 AAAAGAGGATGACATGTATTGATACTC 57.447 33.333 0.00 4.66 34.41 2.59
8046 8718 6.918626 AGAGGATGACATGTATTGATACTCG 58.081 40.000 0.00 0.00 34.41 4.18
8047 8719 5.473931 AGGATGACATGTATTGATACTCGC 58.526 41.667 0.00 0.00 34.41 5.03
8048 8720 4.627467 GGATGACATGTATTGATACTCGCC 59.373 45.833 0.00 0.00 34.41 5.54
8049 8721 3.990092 TGACATGTATTGATACTCGCCC 58.010 45.455 0.00 0.00 34.41 6.13
8050 8722 3.641436 TGACATGTATTGATACTCGCCCT 59.359 43.478 0.00 0.00 34.41 5.19
8051 8723 4.100963 TGACATGTATTGATACTCGCCCTT 59.899 41.667 0.00 0.00 34.41 3.95
8052 8724 5.303333 TGACATGTATTGATACTCGCCCTTA 59.697 40.000 0.00 0.00 34.41 2.69
8053 8725 5.539048 ACATGTATTGATACTCGCCCTTAC 58.461 41.667 0.00 0.00 34.41 2.34
8054 8726 5.069914 ACATGTATTGATACTCGCCCTTACA 59.930 40.000 0.00 0.00 34.41 2.41
8055 8727 5.601583 TGTATTGATACTCGCCCTTACAA 57.398 39.130 3.11 0.00 34.41 2.41
8056 8728 5.597806 TGTATTGATACTCGCCCTTACAAG 58.402 41.667 3.11 0.00 34.41 3.16
8057 8729 5.361571 TGTATTGATACTCGCCCTTACAAGA 59.638 40.000 3.11 0.00 34.41 3.02
8058 8730 4.386867 TTGATACTCGCCCTTACAAGAG 57.613 45.455 0.00 0.00 36.83 2.85
8059 8731 2.693591 TGATACTCGCCCTTACAAGAGG 59.306 50.000 0.00 0.00 35.22 3.69
8060 8732 2.519771 TACTCGCCCTTACAAGAGGA 57.480 50.000 0.00 0.00 39.25 3.71
8061 8733 1.640917 ACTCGCCCTTACAAGAGGAA 58.359 50.000 0.00 0.00 39.25 3.36
8062 8734 1.975680 ACTCGCCCTTACAAGAGGAAA 59.024 47.619 0.00 0.00 39.25 3.13
8063 8735 2.370849 ACTCGCCCTTACAAGAGGAAAA 59.629 45.455 0.00 0.00 39.25 2.29
8064 8736 3.003480 CTCGCCCTTACAAGAGGAAAAG 58.997 50.000 0.00 0.00 39.25 2.27
8065 8737 2.635915 TCGCCCTTACAAGAGGAAAAGA 59.364 45.455 0.00 0.00 39.25 2.52
8066 8738 2.742589 CGCCCTTACAAGAGGAAAAGAC 59.257 50.000 0.00 0.00 39.25 3.01
8067 8739 3.082548 GCCCTTACAAGAGGAAAAGACC 58.917 50.000 0.00 0.00 39.25 3.85
8068 8740 3.335579 CCCTTACAAGAGGAAAAGACCG 58.664 50.000 0.00 0.00 39.25 4.79
8069 8741 3.007614 CCCTTACAAGAGGAAAAGACCGA 59.992 47.826 0.00 0.00 39.25 4.69
8070 8742 4.504340 CCCTTACAAGAGGAAAAGACCGAA 60.504 45.833 0.00 0.00 39.25 4.30
8071 8743 4.451435 CCTTACAAGAGGAAAAGACCGAAC 59.549 45.833 0.00 0.00 39.25 3.95
8072 8744 2.480845 ACAAGAGGAAAAGACCGAACG 58.519 47.619 0.00 0.00 34.73 3.95
8073 8745 2.101917 ACAAGAGGAAAAGACCGAACGA 59.898 45.455 0.00 0.00 34.73 3.85
8074 8746 3.244112 ACAAGAGGAAAAGACCGAACGAT 60.244 43.478 0.00 0.00 34.73 3.73
8075 8747 4.021719 ACAAGAGGAAAAGACCGAACGATA 60.022 41.667 0.00 0.00 34.73 2.92
8076 8748 4.373348 AGAGGAAAAGACCGAACGATAG 57.627 45.455 0.00 0.00 37.25 2.08
8077 8749 3.130693 AGAGGAAAAGACCGAACGATAGG 59.869 47.826 0.00 0.00 36.00 2.57
8078 8750 2.830321 AGGAAAAGACCGAACGATAGGT 59.170 45.455 0.00 0.00 44.64 3.08
8079 8751 2.928116 GGAAAAGACCGAACGATAGGTG 59.072 50.000 1.35 0.00 41.51 4.00
8080 8752 3.367703 GGAAAAGACCGAACGATAGGTGA 60.368 47.826 1.35 0.00 41.51 4.02
8081 8753 3.947910 AAAGACCGAACGATAGGTGAA 57.052 42.857 1.35 0.00 41.51 3.18
8082 8754 2.935481 AGACCGAACGATAGGTGAAC 57.065 50.000 1.35 0.00 41.51 3.18
8114 8786 1.078214 CCAGGGTGATCGTGCACAT 60.078 57.895 18.64 9.52 40.52 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.335011 GCGGGCGCAACTCTTTTT 59.665 55.556 10.83 0.00 41.49 1.94
6 7 3.670377 GGCGGGCGCAACTCTTTT 61.670 61.111 10.83 0.00 44.11 2.27
7 8 4.643387 AGGCGGGCGCAACTCTTT 62.643 61.111 10.83 0.00 44.11 2.52
17 18 3.830192 CATTTCAGGCAGGCGGGC 61.830 66.667 2.26 2.26 43.80 6.13
258 275 2.024871 CTCGTTCGCTCGGCTAGG 59.975 66.667 0.00 0.00 0.00 3.02
450 481 1.070289 GAAGGACGAAAGGAGTGGTGT 59.930 52.381 0.00 0.00 0.00 4.16
454 488 2.841442 AAGGAAGGACGAAAGGAGTG 57.159 50.000 0.00 0.00 0.00 3.51
455 489 3.496337 GGAAAAGGAAGGACGAAAGGAGT 60.496 47.826 0.00 0.00 0.00 3.85
458 492 2.160205 GGGAAAAGGAAGGACGAAAGG 58.840 52.381 0.00 0.00 0.00 3.11
460 494 2.440253 TGAGGGAAAAGGAAGGACGAAA 59.560 45.455 0.00 0.00 0.00 3.46
462 496 1.724545 TGAGGGAAAAGGAAGGACGA 58.275 50.000 0.00 0.00 0.00 4.20
464 498 3.371059 GGAGATGAGGGAAAAGGAAGGAC 60.371 52.174 0.00 0.00 0.00 3.85
469 503 2.200081 CAGGGAGATGAGGGAAAAGGA 58.800 52.381 0.00 0.00 0.00 3.36
473 507 0.253347 AGGCAGGGAGATGAGGGAAA 60.253 55.000 0.00 0.00 0.00 3.13
475 509 1.074926 GAGGCAGGGAGATGAGGGA 60.075 63.158 0.00 0.00 0.00 4.20
482 516 1.002274 GAGGAAGGAGGCAGGGAGA 59.998 63.158 0.00 0.00 0.00 3.71
484 518 0.911525 CAAGAGGAAGGAGGCAGGGA 60.912 60.000 0.00 0.00 0.00 4.20
573 792 8.495949 AGGAATAATCAAAATTATACGCTCACG 58.504 33.333 0.00 0.00 39.92 4.35
612 831 3.655486 TGGAAAAATCATGCAGCAAGTG 58.345 40.909 0.00 0.00 0.00 3.16
671 890 4.096231 TCACAAAGACACAAACACCTGATG 59.904 41.667 0.00 0.00 0.00 3.07
685 904 5.529060 CCCCTAGAAGCATTATCACAAAGAC 59.471 44.000 0.00 0.00 0.00 3.01
686 905 5.684704 CCCCTAGAAGCATTATCACAAAGA 58.315 41.667 0.00 0.00 0.00 2.52
687 906 4.276926 GCCCCTAGAAGCATTATCACAAAG 59.723 45.833 0.00 0.00 0.00 2.77
688 907 4.207165 GCCCCTAGAAGCATTATCACAAA 58.793 43.478 0.00 0.00 0.00 2.83
689 908 3.201930 TGCCCCTAGAAGCATTATCACAA 59.798 43.478 2.84 0.00 33.08 3.33
690 909 2.777114 TGCCCCTAGAAGCATTATCACA 59.223 45.455 2.84 0.00 33.08 3.58
691 910 3.492102 TGCCCCTAGAAGCATTATCAC 57.508 47.619 2.84 0.00 33.08 3.06
692 911 4.518278 TTTGCCCCTAGAAGCATTATCA 57.482 40.909 7.38 0.00 39.11 2.15
789 1008 4.081198 AGAGAAGAAGATGGTTGGCTACAG 60.081 45.833 0.80 0.00 0.00 2.74
919 1138 9.823098 CAGCTAGAAAATATGCACAGATTAATC 57.177 33.333 7.41 7.41 0.00 1.75
975 1194 7.871853 TCTTTCCTTTTATTTGTCACTGTAGC 58.128 34.615 0.00 0.00 0.00 3.58
1023 1242 2.555325 TGAGAGCAGAAATGCCAAAGTG 59.445 45.455 0.00 0.00 34.90 3.16
1180 1399 6.610075 ATGCATCACCTAAGGAAACAAATT 57.390 33.333 0.00 0.00 0.00 1.82
1337 1556 3.182887 AGTGGTGAGAGATCCAGAACT 57.817 47.619 0.00 0.00 34.16 3.01
1352 1571 5.065988 CAGTACACAAAGTAAGCAAAGTGGT 59.934 40.000 0.00 0.00 33.72 4.16
1378 1597 8.897752 GGCTACATGATCTATGGGAAAATATTC 58.102 37.037 0.00 0.00 41.25 1.75
1458 1678 6.767524 ACTTGGACTTGTTTGTACAAATCA 57.232 33.333 23.11 18.53 41.14 2.57
1530 1750 8.618240 TGTCTTCCCTTCTTAATTAGTGGATA 57.382 34.615 0.00 0.00 0.00 2.59
1548 1768 5.768164 TCTTATGTTCCAAACCTTGTCTTCC 59.232 40.000 0.00 0.00 0.00 3.46
1634 1854 2.326773 TTTGGTTCTTCGCGGGGTCA 62.327 55.000 6.13 0.00 0.00 4.02
1646 1866 1.220529 GCAAGGCAAAGCTTTGGTTC 58.779 50.000 34.02 20.54 44.07 3.62
1648 1868 0.179076 GTGCAAGGCAAAGCTTTGGT 60.179 50.000 34.02 1.95 44.07 3.67
1694 1914 6.122277 AGAATTCCGAAAGAAATCTATGGCA 58.878 36.000 0.65 0.00 41.94 4.92
1696 1916 7.041508 CCTGAGAATTCCGAAAGAAATCTATGG 60.042 40.741 0.65 0.00 43.43 2.74
1716 1936 3.520721 TGGAATGAGAGAAATGCCTGAGA 59.479 43.478 0.00 0.00 0.00 3.27
1786 2006 1.076332 GTGGATCAACACGGCTACAC 58.924 55.000 0.00 0.00 0.00 2.90
2014 2259 1.606601 GGCTCCCCCAAAGGTCAAC 60.607 63.158 0.00 0.00 0.00 3.18
2050 2295 3.874383 TCCTCACTCCCAATGAACAAA 57.126 42.857 0.00 0.00 0.00 2.83
2105 2350 3.101437 TCTAACAGGGAATACTTCGGCA 58.899 45.455 0.00 0.00 0.00 5.69
2183 2428 1.272490 TCGTCGAGCTTTGGTCTCATT 59.728 47.619 0.00 0.00 0.00 2.57
2231 2489 4.546829 AAAAGTGATTGGCATGAGCAAT 57.453 36.364 0.00 0.00 44.61 3.56
2275 2533 4.929211 ACAAAAAGTGGAAAGTCAACTTGC 59.071 37.500 0.00 0.00 36.12 4.01
2298 2556 2.165167 CATCTTCAAAGCCTCCAAGCA 58.835 47.619 0.00 0.00 34.23 3.91
2305 2563 0.393537 CCCGCTCATCTTCAAAGCCT 60.394 55.000 0.00 0.00 32.31 4.58
2724 3054 1.978617 GGTCATGGGGTGCTTGTGG 60.979 63.158 0.00 0.00 0.00 4.17
2728 3058 2.036256 GCTGGTCATGGGGTGCTT 59.964 61.111 0.00 0.00 0.00 3.91
2772 3102 0.792640 AATCGCAGTGAAGCTCGTTG 59.207 50.000 0.00 0.00 0.00 4.10
2785 3115 0.320374 ACCTCGAGGACAAAATCGCA 59.680 50.000 37.69 0.00 38.79 5.10
2863 3196 2.000447 GACATACGCACTTCCTTCCAC 59.000 52.381 0.00 0.00 0.00 4.02
2882 3215 3.333219 CCTTGAGGGGCTGCCTGA 61.333 66.667 19.68 0.00 0.00 3.86
2904 3237 1.003233 GTGGGTACTTGGACTTGGAGG 59.997 57.143 0.00 0.00 0.00 4.30
2967 3300 0.463116 GTTTGGTGAGGTGACGTGGT 60.463 55.000 0.00 0.00 0.00 4.16
3038 3371 1.497278 CGGATGACACGGCTGTTTG 59.503 57.895 0.00 0.00 0.00 2.93
3065 3398 2.092968 GTGGCACCATCTTCAGGACATA 60.093 50.000 6.29 0.00 0.00 2.29
3150 3492 2.874086 CGCTGCTTCATCATTACCATCA 59.126 45.455 0.00 0.00 0.00 3.07
3162 3504 2.729675 CGCAATCGTCGCTGCTTCA 61.730 57.895 14.58 0.00 36.38 3.02
3172 3516 0.537188 ACAAGGAGATCCGCAATCGT 59.463 50.000 0.00 0.00 42.08 3.73
3223 3567 4.908601 TCTCTTTTCAATAGGGTGCTGA 57.091 40.909 0.00 0.00 0.00 4.26
3225 3569 5.006386 CACTTCTCTTTTCAATAGGGTGCT 58.994 41.667 0.00 0.00 0.00 4.40
3226 3570 4.379918 GCACTTCTCTTTTCAATAGGGTGC 60.380 45.833 0.00 0.00 39.20 5.01
3238 3582 1.074566 CCCTCCTTGGCACTTCTCTTT 59.925 52.381 0.00 0.00 0.00 2.52
3349 3705 3.594134 CTCCTTTTCAAGCTCGACATCT 58.406 45.455 0.00 0.00 0.00 2.90
3398 3754 2.285977 GTATGTTAGGAACCTTGCCCG 58.714 52.381 0.00 0.00 0.00 6.13
3751 4164 7.428826 AGAGTGGTCTTTTCAGCAAAATAAAG 58.571 34.615 0.00 0.00 30.91 1.85
4313 4727 8.397906 CGACTGCCATCATAAGAAAGAAATTAA 58.602 33.333 0.00 0.00 0.00 1.40
4466 4880 5.301551 TGCCAGAAAAGCTGTGAAAGAAATA 59.698 36.000 0.00 0.00 43.33 1.40
5076 5490 5.782047 TCAAAATTGTAAGCTGGACATTGG 58.218 37.500 2.73 0.00 0.00 3.16
5094 5508 6.981762 ATGCAACACATGAAAACTTCAAAA 57.018 29.167 0.00 0.00 43.95 2.44
5131 5545 7.094506 GGAATGCATTCAGCTACATATGATTGA 60.095 37.037 34.08 4.63 45.94 2.57
5501 5916 6.647895 TGAAAGGATAAACAAGTAGACGTTCC 59.352 38.462 0.00 0.00 0.00 3.62
5585 6000 4.922206 TGCAGGAGATAAATCAACTGGTT 58.078 39.130 12.73 0.00 35.05 3.67
5597 6012 0.758734 CCGTGGGATTGCAGGAGATA 59.241 55.000 0.00 0.00 0.00 1.98
5612 6027 3.503827 TCATAGAGTAGCACAACCGTG 57.496 47.619 0.00 0.00 46.56 4.94
5758 6189 4.662468 TCTTGCATTGGTAAAGCAAACA 57.338 36.364 5.82 0.00 46.30 2.83
6251 6691 1.532604 CGTGCAGGTACTCCAGTCCA 61.533 60.000 0.00 0.00 34.60 4.02
6350 6790 4.056125 GCCAAGCCAAAGTCGCCC 62.056 66.667 0.00 0.00 0.00 6.13
6564 7004 8.539770 AGTTGACTTACATGATCAAGTAACAG 57.460 34.615 17.28 12.25 34.88 3.16
6633 7078 6.651225 AGTTCTTCATACACAAAGCTTACTCC 59.349 38.462 0.00 0.00 0.00 3.85
6689 7137 6.576185 AGAATGCATGTCTTTTTGTTCAACT 58.424 32.000 0.00 0.00 0.00 3.16
6719 7167 3.683822 ACTAGTGTCGTGTAGTGCTACTC 59.316 47.826 10.28 6.22 37.00 2.59
6721 7169 4.416505 AACTAGTGTCGTGTAGTGCTAC 57.583 45.455 0.00 2.60 36.63 3.58
6723 7171 5.443185 TTTAACTAGTGTCGTGTAGTGCT 57.557 39.130 0.00 0.00 29.71 4.40
6724 7172 6.701432 ATTTTAACTAGTGTCGTGTAGTGC 57.299 37.500 0.00 0.00 29.71 4.40
6729 7177 8.932791 CAGGATTTATTTTAACTAGTGTCGTGT 58.067 33.333 0.00 0.00 0.00 4.49
6730 7178 8.388103 CCAGGATTTATTTTAACTAGTGTCGTG 58.612 37.037 0.00 0.00 0.00 4.35
6731 7179 8.316214 TCCAGGATTTATTTTAACTAGTGTCGT 58.684 33.333 0.00 0.00 0.00 4.34
6732 7180 8.712285 TCCAGGATTTATTTTAACTAGTGTCG 57.288 34.615 0.00 0.00 0.00 4.35
6745 7193 2.233271 CTGCGGCATCCAGGATTTATT 58.767 47.619 1.75 0.00 0.00 1.40
6763 7211 9.770503 GAACATTATGCTTTAGATCATATGCTG 57.229 33.333 0.00 0.00 0.00 4.41
6851 7299 2.021722 GCTGTTGTTCAGGTTGCGA 58.978 52.632 0.00 0.00 43.78 5.10
7073 7521 3.100671 GTCCTGGTTGTAGATGGAGTCT 58.899 50.000 0.00 0.00 41.11 3.24
7144 7596 5.468746 GCTACGAAGAATGGCATTATTACCA 59.531 40.000 19.09 7.08 41.06 3.25
7195 7654 4.025229 TCAGCAACATTGACTTACGACAAC 60.025 41.667 0.00 0.00 0.00 3.32
7230 7689 0.106918 AAGGTTTCGTGGAGGCAACA 60.107 50.000 0.00 0.00 41.41 3.33
7232 7691 0.821711 CCAAGGTTTCGTGGAGGCAA 60.822 55.000 0.00 0.00 43.82 4.52
7241 7700 1.930503 GGCACAAAAACCAAGGTTTCG 59.069 47.619 16.88 13.39 46.22 3.46
7260 7719 4.530857 CCAGAGCTAACGCCCCGG 62.531 72.222 0.00 0.00 36.60 5.73
7270 7731 2.289532 GCCTGTCCAGTCCAGAGCT 61.290 63.158 0.00 0.00 31.38 4.09
7295 7756 2.896685 AGCACCTGCATATCTACTCCTC 59.103 50.000 0.00 0.00 45.16 3.71
7296 7757 2.632028 CAGCACCTGCATATCTACTCCT 59.368 50.000 0.00 0.00 45.16 3.69
7297 7758 3.037431 CAGCACCTGCATATCTACTCC 57.963 52.381 0.00 0.00 45.16 3.85
7318 7779 4.659172 TTCAAGCCACCCCAGCGG 62.659 66.667 0.00 0.00 34.64 5.52
7497 7993 0.898320 CTGTAGCCTGTAGGTGTGCT 59.102 55.000 0.00 0.00 37.57 4.40
7522 8018 4.822896 TCGTTTGCCCAGTACAAAAGTTAT 59.177 37.500 0.00 0.00 38.64 1.89
7526 8022 2.875933 TCTCGTTTGCCCAGTACAAAAG 59.124 45.455 0.00 0.00 38.64 2.27
7539 8035 0.734889 GCATCCCACCATCTCGTTTG 59.265 55.000 0.00 0.00 0.00 2.93
7544 8094 1.527844 GCCTGCATCCCACCATCTC 60.528 63.158 0.00 0.00 0.00 2.75
7561 8111 1.718757 CCCAGCAAAGATAGCCACGC 61.719 60.000 0.00 0.00 0.00 5.34
7562 8112 0.392998 ACCCAGCAAAGATAGCCACG 60.393 55.000 0.00 0.00 0.00 4.94
7579 8129 3.689649 GTCACTCCAATTATGGTGACACC 59.310 47.826 18.28 18.28 45.43 4.16
7591 8141 9.561069 GGTTTATTAGATACATGTCACTCCAAT 57.439 33.333 0.00 2.10 0.00 3.16
7593 8143 7.506114 GGGTTTATTAGATACATGTCACTCCA 58.494 38.462 0.00 0.00 0.00 3.86
7595 8145 7.208080 ACGGGTTTATTAGATACATGTCACTC 58.792 38.462 0.00 0.00 0.00 3.51
7596 8146 7.120923 ACGGGTTTATTAGATACATGTCACT 57.879 36.000 0.00 5.76 0.00 3.41
7597 8147 8.139989 ACTACGGGTTTATTAGATACATGTCAC 58.860 37.037 0.00 0.00 0.00 3.67
7598 8148 8.241497 ACTACGGGTTTATTAGATACATGTCA 57.759 34.615 0.00 0.00 0.00 3.58
7599 8149 9.538508 AAACTACGGGTTTATTAGATACATGTC 57.461 33.333 0.00 0.00 45.20 3.06
7600 8150 9.538508 GAAACTACGGGTTTATTAGATACATGT 57.461 33.333 2.69 2.69 46.77 3.21
7605 8155 8.538701 TGGTTGAAACTACGGGTTTATTAGATA 58.461 33.333 8.38 0.00 46.77 1.98
7606 8156 7.396418 TGGTTGAAACTACGGGTTTATTAGAT 58.604 34.615 8.38 0.00 46.77 1.98
7607 8157 6.767456 TGGTTGAAACTACGGGTTTATTAGA 58.233 36.000 8.38 0.00 46.77 2.10
7608 8158 7.414762 CCATGGTTGAAACTACGGGTTTATTAG 60.415 40.741 2.57 0.00 46.77 1.73
7609 8159 6.374894 CCATGGTTGAAACTACGGGTTTATTA 59.625 38.462 2.57 0.00 46.77 0.98
7610 8160 5.184287 CCATGGTTGAAACTACGGGTTTATT 59.816 40.000 2.57 0.00 46.77 1.40
7611 8161 4.703093 CCATGGTTGAAACTACGGGTTTAT 59.297 41.667 2.57 0.00 46.77 1.40
7612 8162 4.073549 CCATGGTTGAAACTACGGGTTTA 58.926 43.478 2.57 0.00 46.77 2.01
7614 8164 2.510613 CCATGGTTGAAACTACGGGTT 58.489 47.619 2.57 0.00 40.28 4.11
7615 8165 1.271707 CCCATGGTTGAAACTACGGGT 60.272 52.381 11.73 0.00 0.00 5.28
7616 8166 1.459450 CCCATGGTTGAAACTACGGG 58.541 55.000 11.73 0.00 0.00 5.28
7617 8167 1.003812 TCCCCATGGTTGAAACTACGG 59.996 52.381 11.73 0.13 0.00 4.02
7618 8168 2.483014 TCCCCATGGTTGAAACTACG 57.517 50.000 11.73 0.00 0.00 3.51
7619 8169 4.028993 TCTTCCCCATGGTTGAAACTAC 57.971 45.455 11.73 0.00 0.00 2.73
7620 8170 4.290985 TGATCTTCCCCATGGTTGAAACTA 59.709 41.667 11.73 2.68 0.00 2.24
7621 8171 3.075882 TGATCTTCCCCATGGTTGAAACT 59.924 43.478 11.73 3.39 0.00 2.66
7622 8172 3.430453 TGATCTTCCCCATGGTTGAAAC 58.570 45.455 11.73 8.00 0.00 2.78
7623 8173 3.824001 TGATCTTCCCCATGGTTGAAA 57.176 42.857 11.73 5.11 0.00 2.69
7624 8174 3.824001 TTGATCTTCCCCATGGTTGAA 57.176 42.857 11.73 11.93 0.00 2.69
7625 8175 3.824001 TTTGATCTTCCCCATGGTTGA 57.176 42.857 11.73 3.87 0.00 3.18
7626 8176 5.046448 TCAAATTTGATCTTCCCCATGGTTG 60.046 40.000 16.91 3.84 31.01 3.77
7627 8177 5.092968 TCAAATTTGATCTTCCCCATGGTT 58.907 37.500 16.91 0.00 31.01 3.67
7628 8178 4.686891 TCAAATTTGATCTTCCCCATGGT 58.313 39.130 16.91 0.00 31.01 3.55
7629 8179 5.680594 TTCAAATTTGATCTTCCCCATGG 57.319 39.130 21.10 4.14 37.00 3.66
7630 8180 9.268268 CAATATTCAAATTTGATCTTCCCCATG 57.732 33.333 21.10 7.84 37.00 3.66
7631 8181 8.995577 ACAATATTCAAATTTGATCTTCCCCAT 58.004 29.630 21.10 11.44 37.00 4.00
7632 8182 8.378115 ACAATATTCAAATTTGATCTTCCCCA 57.622 30.769 21.10 4.64 37.00 4.96
7649 8199 9.944663 TTGATTAGCCGAACAATAACAATATTC 57.055 29.630 0.00 0.00 29.08 1.75
7652 8202 7.414436 GCTTGATTAGCCGAACAATAACAATA 58.586 34.615 0.00 0.00 44.48 1.90
7681 8231 7.553881 AAAACTGTAATTAGCTATCGCATGT 57.446 32.000 0.00 0.00 39.10 3.21
7714 8264 6.638468 GCTCATTTGTCCAAACACTAGAAAAG 59.362 38.462 0.00 0.00 34.35 2.27
7743 8293 7.962964 TGAACTTACTAACCAAGACAATCTG 57.037 36.000 0.00 0.00 0.00 2.90
7749 8299 8.305317 ACTGTCTATGAACTTACTAACCAAGAC 58.695 37.037 0.00 0.00 0.00 3.01
7824 8496 5.221244 GGCAGTAATGTGACAAGAGGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
7826 8498 3.821033 GGCAGTAATGTGACAAGAGGTTT 59.179 43.478 0.00 0.00 0.00 3.27
7828 8500 2.612972 CGGCAGTAATGTGACAAGAGGT 60.613 50.000 0.00 0.00 0.00 3.85
7830 8502 2.668457 GTCGGCAGTAATGTGACAAGAG 59.332 50.000 11.19 0.00 0.00 2.85
7831 8503 2.036604 TGTCGGCAGTAATGTGACAAGA 59.963 45.455 14.90 0.00 36.69 3.02
7832 8504 2.157668 GTGTCGGCAGTAATGTGACAAG 59.842 50.000 17.63 0.00 40.84 3.16
7834 8506 1.069358 TGTGTCGGCAGTAATGTGACA 59.931 47.619 13.75 13.75 37.24 3.58
7841 8513 0.317160 CTCAGGTGTGTCGGCAGTAA 59.683 55.000 0.00 0.00 0.00 2.24
7846 8518 1.668151 GTTCCTCAGGTGTGTCGGC 60.668 63.158 0.00 0.00 0.00 5.54
7848 8520 0.104120 TGTGTTCCTCAGGTGTGTCG 59.896 55.000 0.00 0.00 0.00 4.35
7850 8522 0.180406 GGTGTGTTCCTCAGGTGTGT 59.820 55.000 0.00 0.00 0.00 3.72
7851 8523 0.469917 AGGTGTGTTCCTCAGGTGTG 59.530 55.000 0.00 0.00 31.32 3.82
7852 8524 2.930935 AGGTGTGTTCCTCAGGTGT 58.069 52.632 0.00 0.00 31.32 4.16
7859 8531 1.385347 TGGGTGGAGGTGTGTTCCT 60.385 57.895 0.00 0.00 40.97 3.36
7869 8541 2.044650 CCTGCATGGTGGGTGGAG 60.045 66.667 0.00 0.00 35.13 3.86
7885 8557 4.115199 AAGTCCGGGAGCATGGCC 62.115 66.667 0.00 0.00 0.00 5.36
7886 8558 2.514824 GAAGTCCGGGAGCATGGC 60.515 66.667 0.00 0.00 0.00 4.40
7888 8560 0.807667 CGAAGAAGTCCGGGAGCATG 60.808 60.000 0.00 0.00 0.00 4.06
7889 8561 1.258445 ACGAAGAAGTCCGGGAGCAT 61.258 55.000 0.00 0.00 0.00 3.79
7890 8562 1.469335 AACGAAGAAGTCCGGGAGCA 61.469 55.000 0.00 0.00 0.00 4.26
7891 8563 1.014564 CAACGAAGAAGTCCGGGAGC 61.015 60.000 0.00 0.00 0.00 4.70
7892 8564 0.601558 TCAACGAAGAAGTCCGGGAG 59.398 55.000 0.00 0.00 0.00 4.30
7893 8565 1.042229 TTCAACGAAGAAGTCCGGGA 58.958 50.000 0.00 0.00 0.00 5.14
7894 8566 1.145803 GTTCAACGAAGAAGTCCGGG 58.854 55.000 0.00 0.00 0.00 5.73
7895 8567 1.145803 GGTTCAACGAAGAAGTCCGG 58.854 55.000 0.00 0.00 0.00 5.14
7897 8569 2.144482 TCGGTTCAACGAAGAAGTCC 57.856 50.000 0.00 0.00 40.34 3.85
7898 8570 3.121445 GTCATCGGTTCAACGAAGAAGTC 59.879 47.826 0.00 0.00 46.92 3.01
7899 8571 3.057734 GTCATCGGTTCAACGAAGAAGT 58.942 45.455 0.00 0.00 46.92 3.01
7902 8574 2.035449 AGTGTCATCGGTTCAACGAAGA 59.965 45.455 0.00 0.00 46.92 2.87
7903 8575 2.404215 AGTGTCATCGGTTCAACGAAG 58.596 47.619 0.00 0.00 46.92 3.79
7904 8576 2.223852 TGAGTGTCATCGGTTCAACGAA 60.224 45.455 0.00 0.00 46.92 3.85
7907 8579 2.159653 GCATGAGTGTCATCGGTTCAAC 60.160 50.000 0.00 0.00 34.28 3.18
7910 8582 1.009829 GGCATGAGTGTCATCGGTTC 58.990 55.000 0.00 0.00 34.28 3.62
7911 8583 0.740868 CGGCATGAGTGTCATCGGTT 60.741 55.000 0.00 0.00 34.28 4.44
7912 8584 1.153568 CGGCATGAGTGTCATCGGT 60.154 57.895 0.00 0.00 34.28 4.69
7914 8586 0.458370 TGACGGCATGAGTGTCATCG 60.458 55.000 10.03 0.00 37.69 3.84
7915 8587 1.284657 CTGACGGCATGAGTGTCATC 58.715 55.000 13.29 0.00 41.39 2.92
7916 8588 0.610174 ACTGACGGCATGAGTGTCAT 59.390 50.000 13.29 4.50 41.39 3.06
7917 8589 1.253100 TACTGACGGCATGAGTGTCA 58.747 50.000 12.57 12.57 40.12 3.58
7918 8590 2.159240 TCATACTGACGGCATGAGTGTC 60.159 50.000 0.00 0.83 0.00 3.67
7919 8591 1.824852 TCATACTGACGGCATGAGTGT 59.175 47.619 0.00 0.00 0.00 3.55
7920 8592 2.196749 GTCATACTGACGGCATGAGTG 58.803 52.381 0.00 0.00 37.67 3.51
7921 8593 2.586258 GTCATACTGACGGCATGAGT 57.414 50.000 0.00 0.00 37.67 3.41
7930 8602 0.713883 CAACGCGTGGTCATACTGAC 59.286 55.000 14.98 0.00 46.23 3.51
7931 8603 0.315886 ACAACGCGTGGTCATACTGA 59.684 50.000 15.01 0.00 0.00 3.41
7932 8604 1.136363 CAACAACGCGTGGTCATACTG 60.136 52.381 21.63 10.52 0.00 2.74
7933 8605 1.144969 CAACAACGCGTGGTCATACT 58.855 50.000 21.63 0.00 0.00 2.12
7934 8606 1.136446 GTCAACAACGCGTGGTCATAC 60.136 52.381 21.63 14.35 0.00 2.39
7935 8607 1.141645 GTCAACAACGCGTGGTCATA 58.858 50.000 21.63 5.61 0.00 2.15
7936 8608 0.812014 TGTCAACAACGCGTGGTCAT 60.812 50.000 21.63 1.57 0.00 3.06
7937 8609 0.812014 ATGTCAACAACGCGTGGTCA 60.812 50.000 21.63 14.49 0.00 4.02
7938 8610 0.384230 CATGTCAACAACGCGTGGTC 60.384 55.000 21.63 8.47 0.00 4.02
7940 8612 0.384230 GACATGTCAACAACGCGTGG 60.384 55.000 21.07 14.06 0.00 4.94
7943 8615 1.788203 GCGACATGTCAACAACGCG 60.788 57.895 24.93 3.53 37.29 6.01
7944 8616 0.991770 GTGCGACATGTCAACAACGC 60.992 55.000 24.93 20.93 42.39 4.84
7946 8618 0.384230 CGGTGCGACATGTCAACAAC 60.384 55.000 24.93 21.78 0.00 3.32
7947 8619 0.812014 ACGGTGCGACATGTCAACAA 60.812 50.000 24.93 4.78 0.00 2.83
7949 8621 1.491563 GACGGTGCGACATGTCAAC 59.508 57.895 24.93 20.38 0.00 3.18
7950 8622 2.019408 CGACGGTGCGACATGTCAA 61.019 57.895 24.93 10.23 0.00 3.18
7951 8623 2.430075 CGACGGTGCGACATGTCA 60.430 61.111 24.93 4.83 0.00 3.58
7952 8624 3.179265 CCGACGGTGCGACATGTC 61.179 66.667 16.21 16.21 0.00 3.06
7953 8625 3.626680 CTCCGACGGTGCGACATGT 62.627 63.158 14.79 0.00 0.00 3.21
7955 8627 4.796231 GCTCCGACGGTGCGACAT 62.796 66.667 23.54 0.00 32.56 3.06
7958 8630 4.717629 CTTGCTCCGACGGTGCGA 62.718 66.667 29.53 27.35 44.11 5.10
7961 8633 4.680237 TGCCTTGCTCCGACGGTG 62.680 66.667 14.79 13.07 0.00 4.94
7962 8634 4.681978 GTGCCTTGCTCCGACGGT 62.682 66.667 14.79 0.00 0.00 4.83
7964 8636 4.680237 TGGTGCCTTGCTCCGACG 62.680 66.667 3.08 0.00 44.11 5.12
7967 8639 3.357079 GTGTGGTGCCTTGCTCCG 61.357 66.667 3.08 0.00 44.11 4.63
7969 8641 3.357079 CGGTGTGGTGCCTTGCTC 61.357 66.667 0.00 0.00 0.00 4.26
7970 8642 3.196207 ATCGGTGTGGTGCCTTGCT 62.196 57.895 0.00 0.00 0.00 3.91
7971 8643 2.672996 ATCGGTGTGGTGCCTTGC 60.673 61.111 0.00 0.00 0.00 4.01
7972 8644 0.888736 TTGATCGGTGTGGTGCCTTG 60.889 55.000 0.00 0.00 0.00 3.61
7975 8647 1.599518 TGTTGATCGGTGTGGTGCC 60.600 57.895 0.00 0.00 0.00 5.01
7976 8648 1.574428 GTGTTGATCGGTGTGGTGC 59.426 57.895 0.00 0.00 0.00 5.01
7977 8649 0.878523 ACGTGTTGATCGGTGTGGTG 60.879 55.000 0.00 0.00 0.00 4.17
7979 8651 1.565156 CCACGTGTTGATCGGTGTGG 61.565 60.000 15.65 7.67 40.68 4.17
7980 8652 0.878523 ACCACGTGTTGATCGGTGTG 60.879 55.000 15.65 0.00 0.00 3.82
7981 8653 0.179067 AACCACGTGTTGATCGGTGT 60.179 50.000 15.65 0.00 35.31 4.16
7982 8654 2.612200 AACCACGTGTTGATCGGTG 58.388 52.632 15.65 0.00 35.31 4.94
7991 8663 4.025015 GAGTATCGATACAACCACGTGT 57.975 45.455 31.52 12.17 35.74 4.49
8007 8679 4.654262 TCATCCTCTTTTAAGGGCGAGTAT 59.346 41.667 0.00 0.00 37.02 2.12
8008 8680 4.028131 TCATCCTCTTTTAAGGGCGAGTA 58.972 43.478 0.00 0.00 37.02 2.59
8009 8681 2.838202 TCATCCTCTTTTAAGGGCGAGT 59.162 45.455 0.00 0.00 37.02 4.18
8010 8682 3.198872 GTCATCCTCTTTTAAGGGCGAG 58.801 50.000 0.00 0.00 37.02 5.03
8011 8683 2.569853 TGTCATCCTCTTTTAAGGGCGA 59.430 45.455 0.00 0.00 37.02 5.54
8012 8684 2.985896 TGTCATCCTCTTTTAAGGGCG 58.014 47.619 0.00 0.00 37.02 6.13
8013 8685 4.273318 ACATGTCATCCTCTTTTAAGGGC 58.727 43.478 0.00 0.00 37.02 5.19
8014 8686 7.775093 TCAATACATGTCATCCTCTTTTAAGGG 59.225 37.037 0.00 0.00 37.02 3.95
8015 8687 8.737168 TCAATACATGTCATCCTCTTTTAAGG 57.263 34.615 0.00 0.00 37.81 2.69
8019 8691 9.553064 GAGTATCAATACATGTCATCCTCTTTT 57.447 33.333 0.00 0.00 35.74 2.27
8020 8692 7.869937 CGAGTATCAATACATGTCATCCTCTTT 59.130 37.037 0.00 0.00 35.74 2.52
8021 8693 7.374272 CGAGTATCAATACATGTCATCCTCTT 58.626 38.462 0.00 0.00 35.74 2.85
8022 8694 6.571344 GCGAGTATCAATACATGTCATCCTCT 60.571 42.308 0.00 0.00 35.74 3.69
8023 8695 5.574830 GCGAGTATCAATACATGTCATCCTC 59.425 44.000 0.00 0.00 35.74 3.71
8024 8696 5.473931 GCGAGTATCAATACATGTCATCCT 58.526 41.667 0.00 0.00 35.74 3.24
8025 8697 4.627467 GGCGAGTATCAATACATGTCATCC 59.373 45.833 0.00 0.00 35.74 3.51
8026 8698 4.627467 GGGCGAGTATCAATACATGTCATC 59.373 45.833 0.00 0.00 35.74 2.92
8027 8699 4.284490 AGGGCGAGTATCAATACATGTCAT 59.716 41.667 0.00 0.00 35.74 3.06
8028 8700 3.641436 AGGGCGAGTATCAATACATGTCA 59.359 43.478 0.00 0.00 35.74 3.58
8029 8701 4.258702 AGGGCGAGTATCAATACATGTC 57.741 45.455 0.00 0.00 35.74 3.06
8030 8702 4.689612 AAGGGCGAGTATCAATACATGT 57.310 40.909 2.69 2.69 35.74 3.21
8031 8703 5.538118 TGTAAGGGCGAGTATCAATACATG 58.462 41.667 3.18 0.00 35.74 3.21
8032 8704 5.801531 TGTAAGGGCGAGTATCAATACAT 57.198 39.130 3.18 0.00 35.74 2.29
8033 8705 5.361571 TCTTGTAAGGGCGAGTATCAATACA 59.638 40.000 3.18 0.00 35.74 2.29
8034 8706 5.839621 TCTTGTAAGGGCGAGTATCAATAC 58.160 41.667 0.00 0.00 33.17 1.89
8035 8707 5.010719 CCTCTTGTAAGGGCGAGTATCAATA 59.989 44.000 0.00 0.00 32.35 1.90
8036 8708 4.202264 CCTCTTGTAAGGGCGAGTATCAAT 60.202 45.833 0.00 0.00 32.35 2.57
8037 8709 3.132289 CCTCTTGTAAGGGCGAGTATCAA 59.868 47.826 0.00 0.00 32.35 2.57
8038 8710 2.693591 CCTCTTGTAAGGGCGAGTATCA 59.306 50.000 0.00 0.00 32.35 2.15
8039 8711 2.957006 TCCTCTTGTAAGGGCGAGTATC 59.043 50.000 0.00 0.00 37.02 2.24
8040 8712 3.028094 TCCTCTTGTAAGGGCGAGTAT 57.972 47.619 0.00 0.00 37.02 2.12
8041 8713 2.519771 TCCTCTTGTAAGGGCGAGTA 57.480 50.000 0.00 0.00 37.02 2.59
8042 8714 1.640917 TTCCTCTTGTAAGGGCGAGT 58.359 50.000 0.00 0.00 37.02 4.18
8043 8715 2.762535 TTTCCTCTTGTAAGGGCGAG 57.237 50.000 0.00 0.00 37.02 5.03
8044 8716 2.635915 TCTTTTCCTCTTGTAAGGGCGA 59.364 45.455 0.00 0.00 37.02 5.54
8045 8717 2.742589 GTCTTTTCCTCTTGTAAGGGCG 59.257 50.000 0.00 0.00 37.02 6.13
8046 8718 3.082548 GGTCTTTTCCTCTTGTAAGGGC 58.917 50.000 0.00 0.00 37.02 5.19
8047 8719 3.007614 TCGGTCTTTTCCTCTTGTAAGGG 59.992 47.826 0.00 0.00 37.02 3.95
8048 8720 4.267349 TCGGTCTTTTCCTCTTGTAAGG 57.733 45.455 0.00 0.00 37.81 2.69
8049 8721 4.150098 CGTTCGGTCTTTTCCTCTTGTAAG 59.850 45.833 0.00 0.00 0.00 2.34
8050 8722 4.053295 CGTTCGGTCTTTTCCTCTTGTAA 58.947 43.478 0.00 0.00 0.00 2.41
8051 8723 3.318839 TCGTTCGGTCTTTTCCTCTTGTA 59.681 43.478 0.00 0.00 0.00 2.41
8052 8724 2.101917 TCGTTCGGTCTTTTCCTCTTGT 59.898 45.455 0.00 0.00 0.00 3.16
8053 8725 2.750948 TCGTTCGGTCTTTTCCTCTTG 58.249 47.619 0.00 0.00 0.00 3.02
8054 8726 3.679824 ATCGTTCGGTCTTTTCCTCTT 57.320 42.857 0.00 0.00 0.00 2.85
8055 8727 3.130693 CCTATCGTTCGGTCTTTTCCTCT 59.869 47.826 0.00 0.00 0.00 3.69
8056 8728 3.119209 ACCTATCGTTCGGTCTTTTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
8057 8729 2.830321 ACCTATCGTTCGGTCTTTTCCT 59.170 45.455 0.00 0.00 0.00 3.36
8058 8730 2.928116 CACCTATCGTTCGGTCTTTTCC 59.072 50.000 0.00 0.00 0.00 3.13
8059 8731 3.841643 TCACCTATCGTTCGGTCTTTTC 58.158 45.455 0.00 0.00 0.00 2.29
8060 8732 3.947910 TCACCTATCGTTCGGTCTTTT 57.052 42.857 0.00 0.00 0.00 2.27
8061 8733 3.582780 GTTCACCTATCGTTCGGTCTTT 58.417 45.455 0.00 0.00 0.00 2.52
8062 8734 2.415090 CGTTCACCTATCGTTCGGTCTT 60.415 50.000 0.00 0.00 0.00 3.01
8063 8735 1.131883 CGTTCACCTATCGTTCGGTCT 59.868 52.381 0.00 0.00 0.00 3.85
8064 8736 1.131126 TCGTTCACCTATCGTTCGGTC 59.869 52.381 0.00 0.00 0.00 4.79
8065 8737 1.131883 CTCGTTCACCTATCGTTCGGT 59.868 52.381 0.00 0.00 0.00 4.69
8066 8738 1.399440 TCTCGTTCACCTATCGTTCGG 59.601 52.381 0.00 0.00 0.00 4.30
8067 8739 2.819422 TCTCGTTCACCTATCGTTCG 57.181 50.000 0.00 0.00 0.00 3.95
8068 8740 2.789893 GCATCTCGTTCACCTATCGTTC 59.210 50.000 0.00 0.00 0.00 3.95
8069 8741 2.427453 AGCATCTCGTTCACCTATCGTT 59.573 45.455 0.00 0.00 0.00 3.85
8070 8742 2.025155 AGCATCTCGTTCACCTATCGT 58.975 47.619 0.00 0.00 0.00 3.73
8071 8743 2.783828 AGCATCTCGTTCACCTATCG 57.216 50.000 0.00 0.00 0.00 2.92
8072 8744 3.612955 GCCTAGCATCTCGTTCACCTATC 60.613 52.174 0.00 0.00 0.00 2.08
8073 8745 2.297597 GCCTAGCATCTCGTTCACCTAT 59.702 50.000 0.00 0.00 0.00 2.57
8074 8746 1.681793 GCCTAGCATCTCGTTCACCTA 59.318 52.381 0.00 0.00 0.00 3.08
8075 8747 0.461961 GCCTAGCATCTCGTTCACCT 59.538 55.000 0.00 0.00 0.00 4.00
8076 8748 0.175760 TGCCTAGCATCTCGTTCACC 59.824 55.000 0.00 0.00 31.71 4.02
8077 8749 1.281899 GTGCCTAGCATCTCGTTCAC 58.718 55.000 0.00 0.00 41.91 3.18
8078 8750 0.175760 GGTGCCTAGCATCTCGTTCA 59.824 55.000 0.00 0.00 41.91 3.18
8079 8751 0.175760 TGGTGCCTAGCATCTCGTTC 59.824 55.000 1.02 0.00 40.78 3.95
8080 8752 0.176680 CTGGTGCCTAGCATCTCGTT 59.823 55.000 1.02 0.00 40.78 3.85
8081 8753 1.680522 CCTGGTGCCTAGCATCTCGT 61.681 60.000 1.02 0.00 40.78 4.18
8082 8754 1.068753 CCTGGTGCCTAGCATCTCG 59.931 63.158 1.02 0.00 40.78 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.