Multiple sequence alignment - TraesCS3D01G299100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G299100 chr3D 100.000 5567 0 0 1 5567 414366112 414371678 0.000000e+00 10281.0
1 TraesCS3D01G299100 chr3D 100.000 1643 0 0 5917 7559 414372028 414373670 0.000000e+00 3035.0
2 TraesCS3D01G299100 chr3D 92.754 69 5 0 5917 5985 13182107 13182039 4.830000e-17 100.0
3 TraesCS3D01G299100 chr3B 97.570 2922 34 15 2677 5567 540202839 540205754 0.000000e+00 4968.0
4 TraesCS3D01G299100 chr3B 95.697 2115 55 11 505 2596 540200740 540202841 0.000000e+00 3369.0
5 TraesCS3D01G299100 chr3B 94.329 1587 52 21 5917 7482 540206015 540207584 0.000000e+00 2398.0
6 TraesCS3D01G299100 chr3B 92.424 66 5 0 5917 5982 704578445 704578510 2.250000e-15 95.3
7 TraesCS3D01G299100 chr3A 93.134 1937 99 15 3181 5111 536637916 536636008 0.000000e+00 2809.0
8 TraesCS3D01G299100 chr3A 91.780 1107 63 17 6243 7333 536635229 536634135 0.000000e+00 1515.0
9 TraesCS3D01G299100 chr3A 92.807 1001 49 14 454 1445 536640468 536639482 0.000000e+00 1428.0
10 TraesCS3D01G299100 chr3A 87.289 1125 74 24 1493 2596 536639483 536638407 0.000000e+00 1221.0
11 TraesCS3D01G299100 chr3A 89.526 506 29 2 2677 3159 536638409 536637905 3.000000e-173 619.0
12 TraesCS3D01G299100 chr3A 92.637 421 29 2 5148 5567 536636005 536635586 8.390000e-169 604.0
13 TraesCS3D01G299100 chr3A 95.625 160 7 0 7342 7501 536634055 536633896 2.710000e-64 257.0
14 TraesCS3D01G299100 chr3A 92.727 110 6 2 5990 6098 536635544 536635436 2.820000e-34 158.0
15 TraesCS3D01G299100 chr6D 91.403 221 13 2 1 215 465133045 465133265 1.590000e-76 298.0
16 TraesCS3D01G299100 chr5D 95.135 185 7 1 1410 1592 225256375 225256191 2.670000e-74 291.0
17 TraesCS3D01G299100 chr5D 90.000 70 7 0 5917 5986 530605325 530605394 2.900000e-14 91.6
18 TraesCS3D01G299100 chr1A 94.624 186 7 3 1407 1590 82525881 82526065 1.240000e-72 285.0
19 TraesCS3D01G299100 chr1A 94.595 185 8 1 1410 1592 554284184 554284368 1.240000e-72 285.0
20 TraesCS3D01G299100 chr1A 94.595 185 8 1 1410 1592 554289509 554289325 1.240000e-72 285.0
21 TraesCS3D01G299100 chr4B 94.149 188 8 3 1410 1595 128540671 128540857 4.460000e-72 283.0
22 TraesCS3D01G299100 chr4B 94.118 187 8 3 1410 1594 344467456 344467271 1.610000e-71 281.0
23 TraesCS3D01G299100 chr4B 90.265 113 6 4 2592 2703 192792744 192792852 7.910000e-30 143.0
24 TraesCS3D01G299100 chr4B 88.000 75 9 0 5917 5991 552857626 552857552 1.040000e-13 89.8
25 TraesCS3D01G299100 chr2D 94.149 188 8 3 1407 1592 327962408 327962222 4.460000e-72 283.0
26 TraesCS3D01G299100 chr2D 86.726 226 22 2 1 219 480783425 480783201 2.110000e-60 244.0
27 TraesCS3D01G299100 chr2D 91.509 106 8 1 2588 2692 188886176 188886071 2.200000e-30 145.0
28 TraesCS3D01G299100 chr2B 94.149 188 8 3 1408 1593 121669513 121669699 4.460000e-72 283.0
29 TraesCS3D01G299100 chr6A 98.876 89 1 0 2594 2682 563252413 563252501 7.850000e-35 159.0
30 TraesCS3D01G299100 chr6A 93.137 102 5 2 2585 2685 558041257 558041357 1.700000e-31 148.0
31 TraesCS3D01G299100 chr4A 98.864 88 1 0 2592 2679 649803892 649803979 2.820000e-34 158.0
32 TraesCS3D01G299100 chr4A 96.774 93 3 0 2590 2682 179963033 179963125 1.020000e-33 156.0
33 TraesCS3D01G299100 chr6B 95.789 95 3 1 2585 2679 546656565 546656658 1.310000e-32 152.0
34 TraesCS3D01G299100 chr6B 93.750 64 4 0 5917 5980 284652685 284652748 6.240000e-16 97.1
35 TraesCS3D01G299100 chr5B 92.381 105 8 0 2575 2679 603648273 603648377 4.720000e-32 150.0
36 TraesCS3D01G299100 chr5B 93.333 60 4 0 5917 5976 65592664 65592605 1.040000e-13 89.8
37 TraesCS3D01G299100 chr1B 84.028 144 16 7 2539 2679 47517291 47517430 1.710000e-26 132.0
38 TraesCS3D01G299100 chr7D 91.667 72 6 0 5917 5988 506007020 506006949 4.830000e-17 100.0
39 TraesCS3D01G299100 chr7A 91.667 72 6 0 5917 5988 573432773 573432702 4.830000e-17 100.0
40 TraesCS3D01G299100 chr2A 91.429 70 6 0 5917 5986 364478381 364478312 6.240000e-16 97.1
41 TraesCS3D01G299100 chr7B 90.278 72 7 0 5917 5988 533775298 533775227 2.250000e-15 95.3
42 TraesCS3D01G299100 chr7B 88.060 67 6 2 5917 5982 533775255 533775320 2.260000e-10 78.7
43 TraesCS3D01G299100 chr4D 89.706 68 7 0 5923 5990 81362739 81362672 3.760000e-13 87.9
44 TraesCS3D01G299100 chr4D 90.000 50 5 0 5939 5988 497197987 497198036 1.760000e-06 65.8
45 TraesCS3D01G299100 chr4D 94.872 39 2 0 5936 5974 49083609 49083647 2.280000e-05 62.1
46 TraesCS3D01G299100 chr4D 88.000 50 5 1 5936 5985 9219079 9219031 2.950000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G299100 chr3D 414366112 414373670 7558 False 6658.000000 10281 100.000000 1 7559 2 chr3D.!!$F1 7558
1 TraesCS3D01G299100 chr3B 540200740 540207584 6844 False 3578.333333 4968 95.865333 505 7482 3 chr3B.!!$F2 6977
2 TraesCS3D01G299100 chr3A 536633896 536640468 6572 True 1076.375000 2809 91.940625 454 7501 8 chr3A.!!$R1 7047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 621 0.032130 GCTATCCAACGATCGGCTGA 59.968 55.000 20.98 12.28 0.00 4.26 F
1542 1550 0.464452 CCATAGTGGTCGGACCCTTC 59.536 60.000 23.81 13.97 37.50 3.46 F
1543 1551 0.464452 CATAGTGGTCGGACCCTTCC 59.536 60.000 23.81 9.51 37.50 3.46 F
1544 1552 0.690077 ATAGTGGTCGGACCCTTCCC 60.690 60.000 23.81 7.17 38.99 3.97 F
1738 1758 1.003464 GCTTGGTTGGGCAAATTGGAT 59.997 47.619 0.00 0.00 0.00 3.41 F
1936 1957 2.173569 GTGGGAAGCCCTGACATTATCT 59.826 50.000 3.85 0.00 45.70 1.98 F
3685 3766 1.089920 CTGTGGCTAACTGACCATGC 58.910 55.000 0.00 0.00 38.46 4.06 F
4586 4668 6.425417 GCTCTCAATAAGCAATAGGGTACTTC 59.575 42.308 0.00 0.00 39.61 3.01 F
6114 6197 0.242017 GTCCTCACCTTGCAATGCAC 59.758 55.000 7.72 0.00 38.71 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2246 0.809385 ATATATGCGACCGGACGAGG 59.191 55.000 29.83 1.41 35.09 4.63 R
2857 2929 4.836825 TGGGCTTCTTCTCTTCATTACTG 58.163 43.478 0.00 0.00 0.00 2.74 R
3108 3183 6.420306 CGGTGAAAAATCACATGATTGAAACA 59.580 34.615 7.86 4.50 43.41 2.83 R
3528 3606 7.417496 ACGTAGTGTCAACTTCCTAAATTTC 57.583 36.000 0.00 0.00 42.51 2.17 R
3685 3766 1.059098 TGCTATCTATGCTGGTGGGG 58.941 55.000 0.00 0.00 0.00 4.96 R
4140 4222 8.874816 GGTTATTGAACAGAGAACTAGTCATTC 58.125 37.037 0.00 0.00 37.29 2.67 R
4719 4801 1.612726 GCAGCATTGTTCTCTCCACCT 60.613 52.381 0.00 0.00 0.00 4.00 R
6272 6447 1.154197 GCGTCCAGGAACAAACTACC 58.846 55.000 0.00 0.00 0.00 3.18 R
7523 7791 0.178992 TGCCTTGCCAGTTTGCTAGT 60.179 50.000 0.00 0.00 33.10 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.601705 TTTTTCCAAATCTCATGAAGTTCCT 57.398 32.000 0.00 0.00 0.00 3.36
33 34 6.824305 TTTCCAAATCTCATGAAGTTCCTC 57.176 37.500 0.00 0.00 0.00 3.71
34 35 5.768980 TCCAAATCTCATGAAGTTCCTCT 57.231 39.130 0.00 0.00 0.00 3.69
35 36 6.131972 TCCAAATCTCATGAAGTTCCTCTT 57.868 37.500 0.00 0.00 39.32 2.85
36 37 6.546484 TCCAAATCTCATGAAGTTCCTCTTT 58.454 36.000 0.00 0.00 36.40 2.52
37 38 7.689299 TCCAAATCTCATGAAGTTCCTCTTTA 58.311 34.615 0.00 0.00 36.40 1.85
38 39 8.163408 TCCAAATCTCATGAAGTTCCTCTTTAA 58.837 33.333 0.00 0.00 36.40 1.52
39 40 8.964772 CCAAATCTCATGAAGTTCCTCTTTAAT 58.035 33.333 0.00 0.00 36.40 1.40
43 44 8.924511 TCTCATGAAGTTCCTCTTTAATTTGT 57.075 30.769 0.00 0.00 36.40 2.83
44 45 9.354673 TCTCATGAAGTTCCTCTTTAATTTGTT 57.645 29.630 0.00 0.00 36.40 2.83
45 46 9.971922 CTCATGAAGTTCCTCTTTAATTTGTTT 57.028 29.630 0.00 0.00 36.40 2.83
46 47 9.965824 TCATGAAGTTCCTCTTTAATTTGTTTC 57.034 29.630 0.00 0.00 36.40 2.78
47 48 9.748708 CATGAAGTTCCTCTTTAATTTGTTTCA 57.251 29.630 0.00 0.00 36.40 2.69
49 50 9.965824 TGAAGTTCCTCTTTAATTTGTTTCATC 57.034 29.630 0.00 0.00 36.40 2.92
50 51 9.411801 GAAGTTCCTCTTTAATTTGTTTCATCC 57.588 33.333 0.00 0.00 36.40 3.51
51 52 8.712228 AGTTCCTCTTTAATTTGTTTCATCCT 57.288 30.769 0.00 0.00 0.00 3.24
52 53 9.807921 AGTTCCTCTTTAATTTGTTTCATCCTA 57.192 29.630 0.00 0.00 0.00 2.94
55 56 9.243105 TCCTCTTTAATTTGTTTCATCCTAAGG 57.757 33.333 0.00 0.00 0.00 2.69
56 57 9.243105 CCTCTTTAATTTGTTTCATCCTAAGGA 57.757 33.333 0.00 0.00 35.55 3.36
75 76 5.643421 AGGATATCCTCAGCATTTGTTCT 57.357 39.130 19.18 0.00 44.77 3.01
76 77 6.753913 AGGATATCCTCAGCATTTGTTCTA 57.246 37.500 19.18 0.00 44.77 2.10
77 78 7.327064 AGGATATCCTCAGCATTTGTTCTAT 57.673 36.000 19.18 0.00 44.77 1.98
78 79 7.753630 AGGATATCCTCAGCATTTGTTCTATT 58.246 34.615 19.18 0.00 44.77 1.73
79 80 8.223330 AGGATATCCTCAGCATTTGTTCTATTT 58.777 33.333 19.18 0.00 44.77 1.40
80 81 8.854117 GGATATCCTCAGCATTTGTTCTATTTT 58.146 33.333 14.97 0.00 0.00 1.82
81 82 9.674824 GATATCCTCAGCATTTGTTCTATTTTG 57.325 33.333 0.00 0.00 0.00 2.44
82 83 6.899393 TCCTCAGCATTTGTTCTATTTTGT 57.101 33.333 0.00 0.00 0.00 2.83
83 84 7.288810 TCCTCAGCATTTGTTCTATTTTGTT 57.711 32.000 0.00 0.00 0.00 2.83
84 85 7.370383 TCCTCAGCATTTGTTCTATTTTGTTC 58.630 34.615 0.00 0.00 0.00 3.18
85 86 7.014134 TCCTCAGCATTTGTTCTATTTTGTTCA 59.986 33.333 0.00 0.00 0.00 3.18
86 87 7.115378 CCTCAGCATTTGTTCTATTTTGTTCAC 59.885 37.037 0.00 0.00 0.00 3.18
87 88 7.487484 TCAGCATTTGTTCTATTTTGTTCACA 58.513 30.769 0.00 0.00 0.00 3.58
88 89 7.648908 TCAGCATTTGTTCTATTTTGTTCACAG 59.351 33.333 0.00 0.00 0.00 3.66
89 90 7.648908 CAGCATTTGTTCTATTTTGTTCACAGA 59.351 33.333 0.00 0.00 0.00 3.41
90 91 8.196771 AGCATTTGTTCTATTTTGTTCACAGAA 58.803 29.630 0.00 0.00 0.00 3.02
91 92 8.482429 GCATTTGTTCTATTTTGTTCACAGAAG 58.518 33.333 0.00 0.00 0.00 2.85
92 93 9.734620 CATTTGTTCTATTTTGTTCACAGAAGA 57.265 29.630 0.00 0.00 0.00 2.87
94 95 9.734620 TTTGTTCTATTTTGTTCACAGAAGATG 57.265 29.630 0.00 0.00 0.00 2.90
95 96 8.450578 TGTTCTATTTTGTTCACAGAAGATGT 57.549 30.769 0.00 0.00 45.43 3.06
96 97 8.559536 TGTTCTATTTTGTTCACAGAAGATGTC 58.440 33.333 0.00 0.00 41.41 3.06
97 98 8.778358 GTTCTATTTTGTTCACAGAAGATGTCT 58.222 33.333 0.00 0.00 41.41 3.41
98 99 9.996554 TTCTATTTTGTTCACAGAAGATGTCTA 57.003 29.630 0.00 0.00 41.41 2.59
99 100 9.645059 TCTATTTTGTTCACAGAAGATGTCTAG 57.355 33.333 0.00 0.00 41.41 2.43
100 101 9.645059 CTATTTTGTTCACAGAAGATGTCTAGA 57.355 33.333 0.00 0.00 41.41 2.43
101 102 8.908786 ATTTTGTTCACAGAAGATGTCTAGAA 57.091 30.769 0.00 0.00 41.41 2.10
102 103 8.908786 TTTTGTTCACAGAAGATGTCTAGAAT 57.091 30.769 0.00 0.00 41.41 2.40
103 104 9.996554 TTTTGTTCACAGAAGATGTCTAGAATA 57.003 29.630 0.00 0.00 41.41 1.75
105 106 9.809096 TTGTTCACAGAAGATGTCTAGAATATC 57.191 33.333 0.00 1.98 41.41 1.63
106 107 8.971073 TGTTCACAGAAGATGTCTAGAATATCA 58.029 33.333 16.40 2.81 41.41 2.15
107 108 9.809096 GTTCACAGAAGATGTCTAGAATATCAA 57.191 33.333 16.40 2.69 41.41 2.57
149 150 5.726980 TTTTTCATGGCAGCTTCTATGTT 57.273 34.783 9.36 0.00 0.00 2.71
150 151 6.832520 TTTTTCATGGCAGCTTCTATGTTA 57.167 33.333 9.36 0.00 0.00 2.41
151 152 6.832520 TTTTCATGGCAGCTTCTATGTTAA 57.167 33.333 9.36 3.49 0.00 2.01
152 153 7.408756 TTTTCATGGCAGCTTCTATGTTAAT 57.591 32.000 9.36 0.00 0.00 1.40
153 154 6.381481 TTCATGGCAGCTTCTATGTTAATG 57.619 37.500 9.36 0.00 0.00 1.90
154 155 4.276678 TCATGGCAGCTTCTATGTTAATGC 59.723 41.667 9.36 0.00 0.00 3.56
155 156 3.889815 TGGCAGCTTCTATGTTAATGCT 58.110 40.909 0.00 0.00 32.89 3.79
156 157 3.879295 TGGCAGCTTCTATGTTAATGCTC 59.121 43.478 0.00 0.00 32.89 4.26
157 158 3.251972 GGCAGCTTCTATGTTAATGCTCC 59.748 47.826 0.00 0.00 32.89 4.70
158 159 3.879295 GCAGCTTCTATGTTAATGCTCCA 59.121 43.478 0.00 0.00 0.00 3.86
159 160 4.260948 GCAGCTTCTATGTTAATGCTCCAC 60.261 45.833 0.00 0.00 0.00 4.02
160 161 4.274459 CAGCTTCTATGTTAATGCTCCACC 59.726 45.833 0.00 0.00 0.00 4.61
161 162 3.565902 GCTTCTATGTTAATGCTCCACCC 59.434 47.826 0.00 0.00 0.00 4.61
162 163 4.687219 GCTTCTATGTTAATGCTCCACCCT 60.687 45.833 0.00 0.00 0.00 4.34
163 164 5.440610 CTTCTATGTTAATGCTCCACCCTT 58.559 41.667 0.00 0.00 0.00 3.95
164 165 5.450818 TCTATGTTAATGCTCCACCCTTT 57.549 39.130 0.00 0.00 0.00 3.11
165 166 5.437060 TCTATGTTAATGCTCCACCCTTTC 58.563 41.667 0.00 0.00 0.00 2.62
166 167 3.517296 TGTTAATGCTCCACCCTTTCA 57.483 42.857 0.00 0.00 0.00 2.69
167 168 3.153919 TGTTAATGCTCCACCCTTTCAC 58.846 45.455 0.00 0.00 0.00 3.18
168 169 2.492088 GTTAATGCTCCACCCTTTCACC 59.508 50.000 0.00 0.00 0.00 4.02
169 170 0.482446 AATGCTCCACCCTTTCACCA 59.518 50.000 0.00 0.00 0.00 4.17
170 171 0.038744 ATGCTCCACCCTTTCACCAG 59.961 55.000 0.00 0.00 0.00 4.00
171 172 1.973812 GCTCCACCCTTTCACCAGC 60.974 63.158 0.00 0.00 0.00 4.85
172 173 1.763770 CTCCACCCTTTCACCAGCT 59.236 57.895 0.00 0.00 0.00 4.24
173 174 0.111253 CTCCACCCTTTCACCAGCTT 59.889 55.000 0.00 0.00 0.00 3.74
174 175 0.110486 TCCACCCTTTCACCAGCTTC 59.890 55.000 0.00 0.00 0.00 3.86
175 176 0.895559 CCACCCTTTCACCAGCTTCC 60.896 60.000 0.00 0.00 0.00 3.46
176 177 0.111253 CACCCTTTCACCAGCTTCCT 59.889 55.000 0.00 0.00 0.00 3.36
177 178 1.351017 CACCCTTTCACCAGCTTCCTA 59.649 52.381 0.00 0.00 0.00 2.94
178 179 2.062636 ACCCTTTCACCAGCTTCCTAA 58.937 47.619 0.00 0.00 0.00 2.69
179 180 2.445525 ACCCTTTCACCAGCTTCCTAAA 59.554 45.455 0.00 0.00 0.00 1.85
180 181 2.820197 CCCTTTCACCAGCTTCCTAAAC 59.180 50.000 0.00 0.00 0.00 2.01
181 182 3.486383 CCTTTCACCAGCTTCCTAAACA 58.514 45.455 0.00 0.00 0.00 2.83
182 183 3.503748 CCTTTCACCAGCTTCCTAAACAG 59.496 47.826 0.00 0.00 0.00 3.16
183 184 3.857157 TTCACCAGCTTCCTAAACAGT 57.143 42.857 0.00 0.00 0.00 3.55
184 185 3.857157 TCACCAGCTTCCTAAACAGTT 57.143 42.857 0.00 0.00 0.00 3.16
185 186 4.164843 TCACCAGCTTCCTAAACAGTTT 57.835 40.909 3.49 3.49 0.00 2.66
186 187 5.298989 TCACCAGCTTCCTAAACAGTTTA 57.701 39.130 5.61 5.61 0.00 2.01
187 188 5.305585 TCACCAGCTTCCTAAACAGTTTAG 58.694 41.667 21.88 21.88 41.75 1.85
188 189 5.063880 CACCAGCTTCCTAAACAGTTTAGT 58.936 41.667 25.15 9.13 40.76 2.24
189 190 5.179555 CACCAGCTTCCTAAACAGTTTAGTC 59.820 44.000 25.15 14.33 40.76 2.59
190 191 5.071923 ACCAGCTTCCTAAACAGTTTAGTCT 59.928 40.000 25.15 15.83 40.76 3.24
191 192 5.998363 CCAGCTTCCTAAACAGTTTAGTCTT 59.002 40.000 25.15 8.78 40.76 3.01
192 193 7.159372 CCAGCTTCCTAAACAGTTTAGTCTTA 58.841 38.462 25.15 10.11 40.76 2.10
193 194 7.660208 CCAGCTTCCTAAACAGTTTAGTCTTAA 59.340 37.037 25.15 15.21 40.76 1.85
194 195 9.052759 CAGCTTCCTAAACAGTTTAGTCTTAAA 57.947 33.333 25.15 13.42 40.76 1.52
195 196 9.053840 AGCTTCCTAAACAGTTTAGTCTTAAAC 57.946 33.333 25.15 12.78 45.81 2.01
205 206 6.387041 GTTTAGTCTTAAACTGCCAGGTTT 57.613 37.500 0.00 0.00 43.37 3.27
206 207 6.436261 GTTTAGTCTTAAACTGCCAGGTTTC 58.564 40.000 0.00 0.00 43.37 2.78
207 208 4.164843 AGTCTTAAACTGCCAGGTTTCA 57.835 40.909 0.00 0.00 39.66 2.69
208 209 4.532834 AGTCTTAAACTGCCAGGTTTCAA 58.467 39.130 0.00 0.00 39.66 2.69
209 210 5.140454 AGTCTTAAACTGCCAGGTTTCAAT 58.860 37.500 0.00 0.00 39.66 2.57
210 211 6.303839 AGTCTTAAACTGCCAGGTTTCAATA 58.696 36.000 0.00 0.00 39.66 1.90
211 212 6.431234 AGTCTTAAACTGCCAGGTTTCAATAG 59.569 38.462 0.00 0.00 39.66 1.73
212 213 3.942130 AAACTGCCAGGTTTCAATAGC 57.058 42.857 0.00 0.00 34.79 2.97
213 214 2.584835 ACTGCCAGGTTTCAATAGCA 57.415 45.000 0.00 0.00 0.00 3.49
215 216 1.133790 CTGCCAGGTTTCAATAGCAGC 59.866 52.381 0.00 0.00 40.99 5.25
216 217 1.176527 GCCAGGTTTCAATAGCAGCA 58.823 50.000 0.00 0.00 0.00 4.41
217 218 1.133790 GCCAGGTTTCAATAGCAGCAG 59.866 52.381 0.00 0.00 0.00 4.24
218 219 1.747355 CCAGGTTTCAATAGCAGCAGG 59.253 52.381 0.00 0.00 0.00 4.85
219 220 1.747355 CAGGTTTCAATAGCAGCAGGG 59.253 52.381 0.00 0.00 0.00 4.45
220 221 1.106285 GGTTTCAATAGCAGCAGGGG 58.894 55.000 0.00 0.00 0.00 4.79
221 222 1.616994 GGTTTCAATAGCAGCAGGGGT 60.617 52.381 0.00 0.00 0.00 4.95
222 223 1.474077 GTTTCAATAGCAGCAGGGGTG 59.526 52.381 0.00 0.00 0.00 4.61
223 224 0.034186 TTCAATAGCAGCAGGGGTGG 60.034 55.000 0.00 0.00 0.00 4.61
224 225 1.454479 CAATAGCAGCAGGGGTGGG 60.454 63.158 0.00 0.00 0.00 4.61
225 226 1.930656 AATAGCAGCAGGGGTGGGT 60.931 57.895 0.00 0.00 0.00 4.51
226 227 1.509548 AATAGCAGCAGGGGTGGGTT 61.510 55.000 0.00 0.00 0.00 4.11
227 228 1.509548 ATAGCAGCAGGGGTGGGTTT 61.510 55.000 0.00 0.00 0.00 3.27
228 229 2.137177 TAGCAGCAGGGGTGGGTTTC 62.137 60.000 0.00 0.00 0.00 2.78
229 230 2.283173 CAGCAGGGGTGGGTTTCC 60.283 66.667 0.00 0.00 0.00 3.13
230 231 2.452491 AGCAGGGGTGGGTTTCCT 60.452 61.111 0.00 0.00 0.00 3.36
231 232 2.091283 AGCAGGGGTGGGTTTCCTT 61.091 57.895 0.00 0.00 0.00 3.36
232 233 1.908299 GCAGGGGTGGGTTTCCTTG 60.908 63.158 0.00 0.00 33.84 3.61
233 234 1.850549 CAGGGGTGGGTTTCCTTGA 59.149 57.895 0.00 0.00 32.62 3.02
234 235 0.251341 CAGGGGTGGGTTTCCTTGAG 60.251 60.000 0.00 0.00 32.62 3.02
235 236 0.701310 AGGGGTGGGTTTCCTTGAGT 60.701 55.000 0.00 0.00 0.00 3.41
236 237 1.069775 GGGGTGGGTTTCCTTGAGTA 58.930 55.000 0.00 0.00 0.00 2.59
237 238 1.426215 GGGGTGGGTTTCCTTGAGTAA 59.574 52.381 0.00 0.00 0.00 2.24
238 239 2.158430 GGGGTGGGTTTCCTTGAGTAAA 60.158 50.000 0.00 0.00 0.00 2.01
239 240 3.568443 GGGTGGGTTTCCTTGAGTAAAA 58.432 45.455 0.00 0.00 0.00 1.52
240 241 3.319972 GGGTGGGTTTCCTTGAGTAAAAC 59.680 47.826 0.00 0.00 33.22 2.43
241 242 4.212716 GGTGGGTTTCCTTGAGTAAAACT 58.787 43.478 0.00 0.00 34.20 2.66
242 243 4.277672 GGTGGGTTTCCTTGAGTAAAACTC 59.722 45.833 0.01 0.01 45.26 3.01
251 252 1.804601 GAGTAAAACTCGGTGGGGTG 58.195 55.000 0.00 0.00 35.28 4.61
252 253 1.345415 GAGTAAAACTCGGTGGGGTGA 59.655 52.381 0.00 0.00 35.28 4.02
253 254 1.071228 AGTAAAACTCGGTGGGGTGAC 59.929 52.381 0.00 0.00 0.00 3.67
254 255 5.974765 GAGTAAAACTCGGTGGGGTGACC 62.975 56.522 0.00 0.00 42.42 4.02
267 268 2.474410 GGTGACCTGTTCCTTCGATT 57.526 50.000 0.00 0.00 0.00 3.34
268 269 2.076863 GGTGACCTGTTCCTTCGATTG 58.923 52.381 0.00 0.00 0.00 2.67
269 270 2.550208 GGTGACCTGTTCCTTCGATTGT 60.550 50.000 0.00 0.00 0.00 2.71
270 271 3.306502 GGTGACCTGTTCCTTCGATTGTA 60.307 47.826 0.00 0.00 0.00 2.41
271 272 4.312443 GTGACCTGTTCCTTCGATTGTAA 58.688 43.478 0.00 0.00 0.00 2.41
272 273 4.753107 GTGACCTGTTCCTTCGATTGTAAA 59.247 41.667 0.00 0.00 0.00 2.01
273 274 5.411669 GTGACCTGTTCCTTCGATTGTAAAT 59.588 40.000 0.00 0.00 0.00 1.40
274 275 5.411361 TGACCTGTTCCTTCGATTGTAAATG 59.589 40.000 0.00 0.00 0.00 2.32
275 276 4.700213 ACCTGTTCCTTCGATTGTAAATGG 59.300 41.667 0.00 0.00 0.00 3.16
276 277 4.438744 CCTGTTCCTTCGATTGTAAATGGC 60.439 45.833 0.00 0.00 0.00 4.40
277 278 3.126171 TGTTCCTTCGATTGTAAATGGCG 59.874 43.478 0.00 0.00 0.00 5.69
278 279 3.254470 TCCTTCGATTGTAAATGGCGA 57.746 42.857 0.00 0.00 0.00 5.54
279 280 2.933906 TCCTTCGATTGTAAATGGCGAC 59.066 45.455 0.00 0.00 0.00 5.19
280 281 2.936498 CCTTCGATTGTAAATGGCGACT 59.064 45.455 0.00 0.00 0.00 4.18
281 282 3.374058 CCTTCGATTGTAAATGGCGACTT 59.626 43.478 0.00 0.00 0.00 3.01
282 283 4.569162 CCTTCGATTGTAAATGGCGACTTA 59.431 41.667 0.00 0.00 0.00 2.24
283 284 5.459110 TTCGATTGTAAATGGCGACTTAC 57.541 39.130 0.00 0.00 0.00 2.34
284 285 4.751060 TCGATTGTAAATGGCGACTTACT 58.249 39.130 1.87 0.00 0.00 2.24
285 286 5.172934 TCGATTGTAAATGGCGACTTACTT 58.827 37.500 1.87 0.00 0.00 2.24
286 287 5.640357 TCGATTGTAAATGGCGACTTACTTT 59.360 36.000 1.87 0.00 0.00 2.66
287 288 6.148150 TCGATTGTAAATGGCGACTTACTTTT 59.852 34.615 1.87 0.00 0.00 2.27
288 289 6.799925 CGATTGTAAATGGCGACTTACTTTTT 59.200 34.615 1.87 0.00 0.00 1.94
306 307 4.329462 TTTTTGGAAAGAAATCGGTGGG 57.671 40.909 0.00 0.00 0.00 4.61
307 308 2.961531 TTGGAAAGAAATCGGTGGGA 57.038 45.000 0.00 0.00 0.00 4.37
308 309 2.489938 TGGAAAGAAATCGGTGGGAG 57.510 50.000 0.00 0.00 0.00 4.30
309 310 1.095600 GGAAAGAAATCGGTGGGAGC 58.904 55.000 0.00 0.00 0.00 4.70
310 311 0.727398 GAAAGAAATCGGTGGGAGCG 59.273 55.000 0.00 0.00 40.97 5.03
316 317 4.361971 TCGGTGGGAGCGAGAGGT 62.362 66.667 0.00 0.00 43.66 3.85
326 327 2.878429 CGAGAGGTCGTGTGAGGG 59.122 66.667 0.00 0.00 41.57 4.30
327 328 2.701780 CGAGAGGTCGTGTGAGGGG 61.702 68.421 0.00 0.00 41.57 4.79
328 329 2.283966 AGAGGTCGTGTGAGGGGG 60.284 66.667 0.00 0.00 0.00 5.40
329 330 2.603776 GAGGTCGTGTGAGGGGGT 60.604 66.667 0.00 0.00 0.00 4.95
330 331 2.923035 AGGTCGTGTGAGGGGGTG 60.923 66.667 0.00 0.00 0.00 4.61
331 332 4.699522 GGTCGTGTGAGGGGGTGC 62.700 72.222 0.00 0.00 0.00 5.01
342 343 4.114997 GGGGTGCGCGAACCAATG 62.115 66.667 36.42 0.00 42.47 2.82
343 344 3.053291 GGGTGCGCGAACCAATGA 61.053 61.111 36.42 0.00 42.47 2.57
344 345 2.175811 GGTGCGCGAACCAATGAC 59.824 61.111 31.88 1.65 40.22 3.06
345 346 2.202171 GTGCGCGAACCAATGACG 60.202 61.111 12.10 0.00 0.00 4.35
346 347 2.356433 TGCGCGAACCAATGACGA 60.356 55.556 12.10 0.00 0.00 4.20
347 348 1.956678 TGCGCGAACCAATGACGAA 60.957 52.632 12.10 0.00 0.00 3.85
348 349 1.509162 GCGCGAACCAATGACGAAC 60.509 57.895 12.10 0.00 0.00 3.95
349 350 1.856688 CGCGAACCAATGACGAACA 59.143 52.632 0.00 0.00 0.00 3.18
350 351 0.233590 CGCGAACCAATGACGAACAA 59.766 50.000 0.00 0.00 0.00 2.83
351 352 1.333347 CGCGAACCAATGACGAACAAA 60.333 47.619 0.00 0.00 0.00 2.83
352 353 2.041244 GCGAACCAATGACGAACAAAC 58.959 47.619 0.00 0.00 0.00 2.93
353 354 2.286772 GCGAACCAATGACGAACAAACT 60.287 45.455 0.00 0.00 0.00 2.66
354 355 3.541711 CGAACCAATGACGAACAAACTC 58.458 45.455 0.00 0.00 0.00 3.01
355 356 3.606153 CGAACCAATGACGAACAAACTCC 60.606 47.826 0.00 0.00 0.00 3.85
356 357 2.227194 ACCAATGACGAACAAACTCCC 58.773 47.619 0.00 0.00 0.00 4.30
357 358 2.226330 CCAATGACGAACAAACTCCCA 58.774 47.619 0.00 0.00 0.00 4.37
358 359 2.226437 CCAATGACGAACAAACTCCCAG 59.774 50.000 0.00 0.00 0.00 4.45
359 360 2.185004 ATGACGAACAAACTCCCAGG 57.815 50.000 0.00 0.00 0.00 4.45
360 361 1.124780 TGACGAACAAACTCCCAGGA 58.875 50.000 0.00 0.00 0.00 3.86
361 362 1.487142 TGACGAACAAACTCCCAGGAA 59.513 47.619 0.00 0.00 0.00 3.36
362 363 2.092861 TGACGAACAAACTCCCAGGAAA 60.093 45.455 0.00 0.00 0.00 3.13
363 364 2.946990 GACGAACAAACTCCCAGGAAAA 59.053 45.455 0.00 0.00 0.00 2.29
364 365 3.358118 ACGAACAAACTCCCAGGAAAAA 58.642 40.909 0.00 0.00 0.00 1.94
365 366 3.129813 ACGAACAAACTCCCAGGAAAAAC 59.870 43.478 0.00 0.00 0.00 2.43
366 367 3.490249 CGAACAAACTCCCAGGAAAAACC 60.490 47.826 0.00 0.00 39.35 3.27
367 368 3.108847 ACAAACTCCCAGGAAAAACCA 57.891 42.857 0.00 0.00 42.04 3.67
368 369 3.445987 ACAAACTCCCAGGAAAAACCAA 58.554 40.909 0.00 0.00 42.04 3.67
369 370 3.841255 ACAAACTCCCAGGAAAAACCAAA 59.159 39.130 0.00 0.00 42.04 3.28
370 371 4.081142 ACAAACTCCCAGGAAAAACCAAAG 60.081 41.667 0.00 0.00 42.04 2.77
371 372 2.677914 ACTCCCAGGAAAAACCAAAGG 58.322 47.619 0.00 0.00 42.04 3.11
372 373 1.970640 CTCCCAGGAAAAACCAAAGGG 59.029 52.381 0.00 0.00 43.90 3.95
382 383 3.909662 CCAAAGGGTGAGATGGCG 58.090 61.111 0.00 0.00 0.00 5.69
383 384 1.750399 CCAAAGGGTGAGATGGCGG 60.750 63.158 0.00 0.00 0.00 6.13
384 385 1.750399 CAAAGGGTGAGATGGCGGG 60.750 63.158 0.00 0.00 0.00 6.13
385 386 1.923395 AAAGGGTGAGATGGCGGGA 60.923 57.895 0.00 0.00 0.00 5.14
386 387 1.915078 AAAGGGTGAGATGGCGGGAG 61.915 60.000 0.00 0.00 0.00 4.30
387 388 3.866582 GGGTGAGATGGCGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
388 389 2.764128 GGTGAGATGGCGGGAGGA 60.764 66.667 0.00 0.00 0.00 3.71
389 390 2.367202 GGTGAGATGGCGGGAGGAA 61.367 63.158 0.00 0.00 0.00 3.36
390 391 1.602237 GTGAGATGGCGGGAGGAAA 59.398 57.895 0.00 0.00 0.00 3.13
391 392 0.181350 GTGAGATGGCGGGAGGAAAT 59.819 55.000 0.00 0.00 0.00 2.17
392 393 1.416401 GTGAGATGGCGGGAGGAAATA 59.584 52.381 0.00 0.00 0.00 1.40
393 394 2.123589 TGAGATGGCGGGAGGAAATAA 58.876 47.619 0.00 0.00 0.00 1.40
394 395 2.507886 TGAGATGGCGGGAGGAAATAAA 59.492 45.455 0.00 0.00 0.00 1.40
395 396 3.053991 TGAGATGGCGGGAGGAAATAAAA 60.054 43.478 0.00 0.00 0.00 1.52
396 397 3.288092 AGATGGCGGGAGGAAATAAAAC 58.712 45.455 0.00 0.00 0.00 2.43
397 398 2.891191 TGGCGGGAGGAAATAAAACT 57.109 45.000 0.00 0.00 0.00 2.66
398 399 2.442413 TGGCGGGAGGAAATAAAACTG 58.558 47.619 0.00 0.00 0.00 3.16
399 400 2.040545 TGGCGGGAGGAAATAAAACTGA 59.959 45.455 0.00 0.00 0.00 3.41
400 401 3.086282 GGCGGGAGGAAATAAAACTGAA 58.914 45.455 0.00 0.00 0.00 3.02
401 402 3.119602 GGCGGGAGGAAATAAAACTGAAC 60.120 47.826 0.00 0.00 0.00 3.18
402 403 3.425758 GCGGGAGGAAATAAAACTGAACG 60.426 47.826 0.00 0.00 0.00 3.95
403 404 3.998341 CGGGAGGAAATAAAACTGAACGA 59.002 43.478 0.00 0.00 0.00 3.85
404 405 4.453136 CGGGAGGAAATAAAACTGAACGAA 59.547 41.667 0.00 0.00 0.00 3.85
405 406 5.049267 CGGGAGGAAATAAAACTGAACGAAA 60.049 40.000 0.00 0.00 0.00 3.46
406 407 6.513720 CGGGAGGAAATAAAACTGAACGAAAA 60.514 38.462 0.00 0.00 0.00 2.29
407 408 7.375834 GGGAGGAAATAAAACTGAACGAAAAT 58.624 34.615 0.00 0.00 0.00 1.82
408 409 8.517056 GGGAGGAAATAAAACTGAACGAAAATA 58.483 33.333 0.00 0.00 0.00 1.40
409 410 9.902196 GGAGGAAATAAAACTGAACGAAAATAA 57.098 29.630 0.00 0.00 0.00 1.40
418 419 9.511144 AAAACTGAACGAAAATAAAATCGAAGT 57.489 25.926 1.84 0.71 41.43 3.01
420 421 9.590088 AACTGAACGAAAATAAAATCGAAGTAC 57.410 29.630 1.84 0.00 41.43 2.73
421 422 8.225777 ACTGAACGAAAATAAAATCGAAGTACC 58.774 33.333 1.84 0.00 41.43 3.34
422 423 7.520686 TGAACGAAAATAAAATCGAAGTACCC 58.479 34.615 1.84 0.00 41.43 3.69
423 424 6.098367 ACGAAAATAAAATCGAAGTACCCG 57.902 37.500 1.84 0.00 41.43 5.28
424 425 5.063817 ACGAAAATAAAATCGAAGTACCCGG 59.936 40.000 0.00 0.00 41.43 5.73
425 426 4.888038 AAATAAAATCGAAGTACCCGGC 57.112 40.909 0.00 0.00 0.00 6.13
426 427 3.832615 ATAAAATCGAAGTACCCGGCT 57.167 42.857 0.00 0.00 0.00 5.52
427 428 4.942761 ATAAAATCGAAGTACCCGGCTA 57.057 40.909 0.00 0.00 0.00 3.93
428 429 3.832615 AAAATCGAAGTACCCGGCTAT 57.167 42.857 0.00 0.00 0.00 2.97
429 430 3.832615 AAATCGAAGTACCCGGCTATT 57.167 42.857 0.00 0.00 0.00 1.73
430 431 4.942761 AAATCGAAGTACCCGGCTATTA 57.057 40.909 0.00 0.00 0.00 0.98
431 432 4.942761 AATCGAAGTACCCGGCTATTAA 57.057 40.909 0.00 0.00 0.00 1.40
432 433 3.715628 TCGAAGTACCCGGCTATTAAC 57.284 47.619 0.00 0.00 0.00 2.01
433 434 3.290710 TCGAAGTACCCGGCTATTAACT 58.709 45.455 0.00 0.00 0.00 2.24
434 435 3.067180 TCGAAGTACCCGGCTATTAACTG 59.933 47.826 0.00 0.00 0.00 3.16
435 436 2.904697 AGTACCCGGCTATTAACTGC 57.095 50.000 0.00 0.00 0.00 4.40
436 437 2.395619 AGTACCCGGCTATTAACTGCT 58.604 47.619 0.00 0.00 0.00 4.24
437 438 2.770232 AGTACCCGGCTATTAACTGCTT 59.230 45.455 0.00 0.00 0.00 3.91
438 439 2.327200 ACCCGGCTATTAACTGCTTC 57.673 50.000 0.00 0.00 0.00 3.86
439 440 1.217882 CCCGGCTATTAACTGCTTCG 58.782 55.000 0.00 0.00 0.00 3.79
440 441 1.472728 CCCGGCTATTAACTGCTTCGT 60.473 52.381 0.00 0.00 0.00 3.85
441 442 2.277084 CCGGCTATTAACTGCTTCGTT 58.723 47.619 0.00 0.00 0.00 3.85
442 443 3.450578 CCGGCTATTAACTGCTTCGTTA 58.549 45.455 0.00 0.00 0.00 3.18
443 444 3.489785 CCGGCTATTAACTGCTTCGTTAG 59.510 47.826 0.00 0.00 31.61 2.34
444 445 4.357142 CGGCTATTAACTGCTTCGTTAGA 58.643 43.478 2.24 0.00 31.61 2.10
445 446 4.982916 CGGCTATTAACTGCTTCGTTAGAT 59.017 41.667 2.24 0.00 31.61 1.98
446 447 5.107837 CGGCTATTAACTGCTTCGTTAGATG 60.108 44.000 2.24 0.00 31.61 2.90
447 448 5.753921 GGCTATTAACTGCTTCGTTAGATGT 59.246 40.000 2.24 0.00 31.61 3.06
448 449 6.921857 GGCTATTAACTGCTTCGTTAGATGTA 59.078 38.462 2.24 0.00 31.61 2.29
449 450 7.115095 GGCTATTAACTGCTTCGTTAGATGTAG 59.885 40.741 2.24 0.00 39.16 2.74
450 451 7.861372 GCTATTAACTGCTTCGTTAGATGTAGA 59.139 37.037 6.53 0.00 37.57 2.59
451 452 9.388346 CTATTAACTGCTTCGTTAGATGTAGAG 57.612 37.037 6.53 0.00 37.57 2.43
452 453 5.899120 AACTGCTTCGTTAGATGTAGAGA 57.101 39.130 6.53 0.00 37.57 3.10
453 454 6.458232 AACTGCTTCGTTAGATGTAGAGAT 57.542 37.500 6.53 0.00 37.57 2.75
454 455 7.569639 AACTGCTTCGTTAGATGTAGAGATA 57.430 36.000 6.53 0.00 37.57 1.98
455 456 7.569639 ACTGCTTCGTTAGATGTAGAGATAA 57.430 36.000 6.53 0.00 37.57 1.75
456 457 7.644490 ACTGCTTCGTTAGATGTAGAGATAAG 58.356 38.462 6.53 0.00 37.57 1.73
457 458 6.439599 TGCTTCGTTAGATGTAGAGATAAGC 58.560 40.000 0.00 0.00 36.90 3.09
458 459 6.039382 TGCTTCGTTAGATGTAGAGATAAGCA 59.961 38.462 0.00 0.00 42.17 3.91
459 460 7.087639 GCTTCGTTAGATGTAGAGATAAGCAT 58.912 38.462 0.00 0.00 36.50 3.79
460 461 7.061673 GCTTCGTTAGATGTAGAGATAAGCATG 59.938 40.741 0.00 0.00 36.50 4.06
461 462 7.745620 TCGTTAGATGTAGAGATAAGCATGA 57.254 36.000 0.00 0.00 0.00 3.07
462 463 8.166422 TCGTTAGATGTAGAGATAAGCATGAA 57.834 34.615 0.00 0.00 0.00 2.57
463 464 8.630037 TCGTTAGATGTAGAGATAAGCATGAAA 58.370 33.333 0.00 0.00 0.00 2.69
485 486 1.519408 AAAGCACGCCATAGACGTTT 58.481 45.000 0.00 0.00 42.96 3.60
502 503 2.007608 GTTTGAACGAGGTGCCTATCC 58.992 52.381 0.00 0.00 0.00 2.59
555 556 2.846652 CGCCCTACTAGTCGCCCAG 61.847 68.421 0.00 0.00 0.00 4.45
556 557 1.757340 GCCCTACTAGTCGCCCAGT 60.757 63.158 0.00 0.00 0.00 4.00
557 558 1.736365 GCCCTACTAGTCGCCCAGTC 61.736 65.000 0.00 0.00 0.00 3.51
558 559 1.445716 CCCTACTAGTCGCCCAGTCG 61.446 65.000 0.00 0.00 0.00 4.18
559 560 1.355916 CTACTAGTCGCCCAGTCGC 59.644 63.158 0.00 0.00 0.00 5.19
560 561 2.061182 CTACTAGTCGCCCAGTCGCC 62.061 65.000 0.00 0.00 0.00 5.54
620 621 0.032130 GCTATCCAACGATCGGCTGA 59.968 55.000 20.98 12.28 0.00 4.26
682 683 5.600898 TCATATTCCGATTCCCAAGTACTCA 59.399 40.000 0.00 0.00 0.00 3.41
721 722 4.652421 TCCCGGTAATACTAGCTGTTCATT 59.348 41.667 0.00 0.00 0.00 2.57
760 761 1.856597 GAATATTCCGTCAACGTCGGG 59.143 52.381 13.50 1.48 46.82 5.14
778 779 2.890474 GCGCAGTATCGGTGGGTG 60.890 66.667 0.30 0.00 0.00 4.61
779 780 2.890474 CGCAGTATCGGTGGGTGC 60.890 66.667 0.00 0.00 0.00 5.01
780 781 2.267642 GCAGTATCGGTGGGTGCA 59.732 61.111 0.00 0.00 34.18 4.57
926 930 1.988293 TCCTCCTCGCTCCATTAGAG 58.012 55.000 0.00 0.00 46.29 2.43
1055 1060 0.691078 TCCGATTAGCTGGCCTTCCT 60.691 55.000 3.32 0.00 0.00 3.36
1127 1132 5.010282 TGTTTATCCTCTTTTTCCTCCTGC 58.990 41.667 0.00 0.00 0.00 4.85
1300 1305 8.472007 ACTATAGAAGTTTGTGCTAGCTAGAT 57.528 34.615 25.15 6.66 33.35 1.98
1334 1340 3.829948 CAACTAGCCAATGAACTTGCTG 58.170 45.455 0.00 0.00 33.20 4.41
1383 1389 3.181520 GCGCGATTCTGTACAATTTCTGT 60.182 43.478 12.10 0.00 42.47 3.41
1458 1464 0.890542 TGCTGCCTTGTGACCATGAC 60.891 55.000 0.00 0.00 0.00 3.06
1526 1534 1.202651 GGCTGCGTACAATAGACCCAT 60.203 52.381 0.00 0.00 0.00 4.00
1538 1546 1.821258 GACCCATAGTGGTCGGACC 59.179 63.158 20.36 20.36 44.98 4.46
1539 1547 1.683418 GACCCATAGTGGTCGGACCC 61.683 65.000 23.81 14.91 44.98 4.46
1540 1548 1.382695 CCCATAGTGGTCGGACCCT 60.383 63.158 23.81 20.55 37.50 4.34
1541 1549 0.981277 CCCATAGTGGTCGGACCCTT 60.981 60.000 23.81 14.17 37.50 3.95
1542 1550 0.464452 CCATAGTGGTCGGACCCTTC 59.536 60.000 23.81 13.97 37.50 3.46
1543 1551 0.464452 CATAGTGGTCGGACCCTTCC 59.536 60.000 23.81 9.51 37.50 3.46
1544 1552 0.690077 ATAGTGGTCGGACCCTTCCC 60.690 60.000 23.81 7.17 38.99 3.97
1636 1656 1.697432 TCTGTGGTCAAGGGAATCGTT 59.303 47.619 0.00 0.00 0.00 3.85
1738 1758 1.003464 GCTTGGTTGGGCAAATTGGAT 59.997 47.619 0.00 0.00 0.00 3.41
1878 1899 2.548067 CCGTAGAACCTGCTGTGAACTT 60.548 50.000 0.00 0.00 0.00 2.66
1928 1949 2.459969 TTGCTGTGGGAAGCCCTGA 61.460 57.895 3.85 0.00 45.70 3.86
1936 1957 2.173569 GTGGGAAGCCCTGACATTATCT 59.826 50.000 3.85 0.00 45.70 1.98
2052 2082 7.271511 TGCAACATAACTGAAACCAAGAAATT 58.728 30.769 0.00 0.00 0.00 1.82
2053 2083 8.417106 TGCAACATAACTGAAACCAAGAAATTA 58.583 29.630 0.00 0.00 0.00 1.40
2209 2246 2.969262 AGGAGGGCAGCTAGATTAGTTC 59.031 50.000 0.00 0.00 0.00 3.01
2212 2249 2.969262 AGGGCAGCTAGATTAGTTCCTC 59.031 50.000 0.00 0.00 0.00 3.71
2362 2406 3.181477 TGAACAACAGGTGGCATCTTTTG 60.181 43.478 21.79 21.79 0.00 2.44
2603 2652 6.885922 ACAGTGTTAAATATGTACTCCCTCC 58.114 40.000 0.00 0.00 0.00 4.30
2604 2653 5.983720 CAGTGTTAAATATGTACTCCCTCCG 59.016 44.000 0.00 0.00 0.00 4.63
2605 2654 5.659971 AGTGTTAAATATGTACTCCCTCCGT 59.340 40.000 0.00 0.00 0.00 4.69
2606 2655 6.835488 AGTGTTAAATATGTACTCCCTCCGTA 59.165 38.462 0.00 0.00 0.00 4.02
2607 2656 7.342799 AGTGTTAAATATGTACTCCCTCCGTAA 59.657 37.037 0.00 0.00 0.00 3.18
2608 2657 7.981225 GTGTTAAATATGTACTCCCTCCGTAAA 59.019 37.037 0.00 0.00 0.00 2.01
2609 2658 7.981225 TGTTAAATATGTACTCCCTCCGTAAAC 59.019 37.037 0.00 0.00 0.00 2.01
2610 2659 6.803366 AAATATGTACTCCCTCCGTAAACT 57.197 37.500 0.00 0.00 0.00 2.66
2611 2660 7.902920 AAATATGTACTCCCTCCGTAAACTA 57.097 36.000 0.00 0.00 0.00 2.24
2612 2661 7.902920 AATATGTACTCCCTCCGTAAACTAA 57.097 36.000 0.00 0.00 0.00 2.24
2613 2662 8.488308 AATATGTACTCCCTCCGTAAACTAAT 57.512 34.615 0.00 0.00 0.00 1.73
2614 2663 9.592196 AATATGTACTCCCTCCGTAAACTAATA 57.408 33.333 0.00 0.00 0.00 0.98
2615 2664 9.765295 ATATGTACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
2617 2666 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
2618 2667 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
2619 2668 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2620 2669 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2621 2670 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2622 2671 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2623 2672 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2624 2673 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2625 2674 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2626 2675 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2627 2676 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2628 2677 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2640 2689 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2641 2690 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2642 2691 7.828712 AGAGCGTTTAGATCACTAAAGTAGTT 58.171 34.615 0.00 0.00 45.42 2.24
2643 2692 8.954350 AGAGCGTTTAGATCACTAAAGTAGTTA 58.046 33.333 0.00 0.00 45.42 2.24
2644 2693 9.733219 GAGCGTTTAGATCACTAAAGTAGTTAT 57.267 33.333 0.00 0.00 45.42 1.89
2645 2694 9.733219 AGCGTTTAGATCACTAAAGTAGTTATC 57.267 33.333 0.00 2.65 45.42 1.75
2646 2695 9.733219 GCGTTTAGATCACTAAAGTAGTTATCT 57.267 33.333 13.75 13.75 46.18 1.98
2675 2724 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
2711 2760 6.993079 ACACCAAAGATTTAAAGGAATGTCC 58.007 36.000 0.00 0.00 36.58 4.02
2857 2929 2.561478 TTCCACTGCCAAGTAAGACC 57.439 50.000 0.00 0.00 33.79 3.85
3144 3219 7.265673 TGTGATTTTTCACCGTTGGAAAATTA 58.734 30.769 12.62 6.61 46.78 1.40
3146 3221 8.769891 GTGATTTTTCACCGTTGGAAAATTATT 58.230 29.630 12.62 0.00 46.78 1.40
3528 3606 9.784531 ACATCAAATTATACTATCCCTTGACTG 57.215 33.333 0.00 0.00 0.00 3.51
3685 3766 1.089920 CTGTGGCTAACTGACCATGC 58.910 55.000 0.00 0.00 38.46 4.06
4140 4222 6.992063 AGAAAGCTCATAGGTGTTGTAATG 57.008 37.500 0.00 0.00 0.00 1.90
4557 4639 7.759489 TTTTATCAACAAGCATGTAAGTCCT 57.241 32.000 0.00 0.00 39.40 3.85
4586 4668 6.425417 GCTCTCAATAAGCAATAGGGTACTTC 59.575 42.308 0.00 0.00 39.61 3.01
4783 4865 2.545526 ACGTTGACTTTGATGAGCTGTG 59.454 45.455 0.00 0.00 0.00 3.66
4793 4875 4.168922 TGATGAGCTGTGCAATTCAAAG 57.831 40.909 0.00 0.00 32.98 2.77
4800 4882 2.803956 CTGTGCAATTCAAAGGCTTTGG 59.196 45.455 33.00 20.84 40.98 3.28
4833 4915 4.236527 ACAATCTTAGGCGGATTTTCCT 57.763 40.909 1.82 0.00 33.30 3.36
5549 5632 3.960102 TGCCTTTTTGGTCACTCTGAAAT 59.040 39.130 0.00 0.00 38.35 2.17
5982 6065 6.661304 TCTTATATTTTAGGACGGAGGGAC 57.339 41.667 0.00 0.00 0.00 4.46
6047 6130 6.930164 TGAATTCATTGGAAGAAAACACATGG 59.070 34.615 3.38 0.00 36.25 3.66
6114 6197 0.242017 GTCCTCACCTTGCAATGCAC 59.758 55.000 7.72 0.00 38.71 4.57
6270 6445 1.826385 ACTACAACTTGATGGCAGGC 58.174 50.000 0.00 0.00 0.00 4.85
6271 6446 1.073763 ACTACAACTTGATGGCAGGCA 59.926 47.619 0.00 0.00 0.00 4.75
6272 6447 1.741706 CTACAACTTGATGGCAGGCAG 59.258 52.381 1.89 0.00 0.00 4.85
6273 6448 0.896940 ACAACTTGATGGCAGGCAGG 60.897 55.000 1.89 0.00 0.00 4.85
6282 6457 0.184933 TGGCAGGCAGGTAGTTTGTT 59.815 50.000 0.00 0.00 0.00 2.83
6303 6478 2.037902 TCCTGGACGCATGTTAAACTGA 59.962 45.455 0.00 0.00 0.00 3.41
6715 6897 5.916661 ACACGAGTTCATGTATACCTCTT 57.083 39.130 0.00 0.00 0.00 2.85
6806 6990 5.764131 TCCACACGAAATTTAATGGTTGAC 58.236 37.500 0.00 0.00 0.00 3.18
6897 7091 6.705381 TGGAATTGGTGTTGAAATGCTAAAAG 59.295 34.615 0.00 0.00 0.00 2.27
6941 7137 4.576463 GTGGTTCAGGTAAATAGGCATCAG 59.424 45.833 0.00 0.00 0.00 2.90
6969 7165 3.354089 CAACTTGTGCCCTGTTGTAAG 57.646 47.619 0.00 0.00 37.05 2.34
7060 7256 8.250332 GCTCCCTGTCAATTGTTGATAATTTTA 58.750 33.333 5.13 0.00 42.47 1.52
7075 7271 8.671384 TGATAATTTTATAAGGAACCGGTCTG 57.329 34.615 8.04 0.00 0.00 3.51
7114 7310 2.472695 TGTTTCCCTCACCAATCTCG 57.527 50.000 0.00 0.00 0.00 4.04
7270 7466 0.880278 CGGAATATGCCTCCACCACG 60.880 60.000 0.00 0.00 32.77 4.94
7273 7469 2.624674 AATATGCCTCCACCACGGCC 62.625 60.000 0.00 0.00 45.71 6.13
7344 7541 6.257411 TCGCTTGCTAAGTAGTAGTAGTAGTG 59.743 42.308 0.00 0.00 31.78 2.74
7350 7618 6.038050 GCTAAGTAGTAGTAGTAGTGGTGGTG 59.962 46.154 0.00 0.00 31.78 4.17
7355 7623 1.132945 AGTAGTAGTGGTGGTGGTGGT 60.133 52.381 0.00 0.00 0.00 4.16
7373 7641 7.376615 GTGGTGGTAGTAGGTAATATGTGATC 58.623 42.308 0.00 0.00 0.00 2.92
7501 7769 2.159114 GCAGAATCAGAGTCAGTCCTCC 60.159 54.545 0.00 0.00 31.53 4.30
7502 7770 3.364549 CAGAATCAGAGTCAGTCCTCCT 58.635 50.000 0.00 0.00 31.53 3.69
7503 7771 3.768757 CAGAATCAGAGTCAGTCCTCCTT 59.231 47.826 0.00 0.00 31.53 3.36
7504 7772 4.222588 CAGAATCAGAGTCAGTCCTCCTTT 59.777 45.833 0.00 0.00 31.53 3.11
7505 7773 4.222588 AGAATCAGAGTCAGTCCTCCTTTG 59.777 45.833 0.00 0.00 31.53 2.77
7506 7774 2.964209 TCAGAGTCAGTCCTCCTTTGT 58.036 47.619 0.00 0.00 31.53 2.83
7507 7775 4.114015 TCAGAGTCAGTCCTCCTTTGTA 57.886 45.455 0.00 0.00 31.53 2.41
7508 7776 4.678256 TCAGAGTCAGTCCTCCTTTGTAT 58.322 43.478 0.00 0.00 31.53 2.29
7509 7777 5.087323 TCAGAGTCAGTCCTCCTTTGTATT 58.913 41.667 0.00 0.00 31.53 1.89
7510 7778 6.253758 TCAGAGTCAGTCCTCCTTTGTATTA 58.746 40.000 0.00 0.00 31.53 0.98
7511 7779 6.724441 TCAGAGTCAGTCCTCCTTTGTATTAA 59.276 38.462 0.00 0.00 31.53 1.40
7512 7780 7.400339 TCAGAGTCAGTCCTCCTTTGTATTAAT 59.600 37.037 0.00 0.00 31.53 1.40
7513 7781 8.696374 CAGAGTCAGTCCTCCTTTGTATTAATA 58.304 37.037 0.00 0.00 31.53 0.98
7514 7782 8.697292 AGAGTCAGTCCTCCTTTGTATTAATAC 58.303 37.037 17.18 17.18 31.53 1.89
7515 7783 8.375493 AGTCAGTCCTCCTTTGTATTAATACA 57.625 34.615 21.73 21.73 41.19 2.29
7535 7803 7.849804 ATACAATTCACTACTAGCAAACTGG 57.150 36.000 0.00 0.00 0.00 4.00
7536 7804 4.455877 ACAATTCACTACTAGCAAACTGGC 59.544 41.667 0.00 0.00 0.00 4.85
7537 7805 3.762407 TTCACTACTAGCAAACTGGCA 57.238 42.857 0.00 0.00 35.83 4.92
7538 7806 3.762407 TCACTACTAGCAAACTGGCAA 57.238 42.857 0.00 0.00 35.83 4.52
7539 7807 3.664107 TCACTACTAGCAAACTGGCAAG 58.336 45.455 0.00 0.00 35.83 4.01
7540 7808 2.744202 CACTACTAGCAAACTGGCAAGG 59.256 50.000 0.00 0.00 35.83 3.61
7541 7809 1.740025 CTACTAGCAAACTGGCAAGGC 59.260 52.381 0.00 0.00 35.83 4.35
7542 7810 0.178992 ACTAGCAAACTGGCAAGGCA 60.179 50.000 0.00 0.00 35.83 4.75
7543 7811 0.242017 CTAGCAAACTGGCAAGGCAC 59.758 55.000 0.00 0.00 35.83 5.01
7545 7813 0.178992 AGCAAACTGGCAAGGCACTA 60.179 50.000 0.00 0.00 38.49 2.74
7546 7814 0.242017 GCAAACTGGCAAGGCACTAG 59.758 55.000 0.00 0.00 38.49 2.57
7547 7815 1.609208 CAAACTGGCAAGGCACTAGT 58.391 50.000 0.00 0.00 38.49 2.57
7548 7816 2.778299 CAAACTGGCAAGGCACTAGTA 58.222 47.619 0.00 0.00 38.49 1.82
7549 7817 2.744202 CAAACTGGCAAGGCACTAGTAG 59.256 50.000 0.00 0.00 38.49 2.57
7550 7818 1.938585 ACTGGCAAGGCACTAGTAGA 58.061 50.000 3.59 0.00 38.49 2.59
7551 7819 2.472029 ACTGGCAAGGCACTAGTAGAT 58.528 47.619 3.59 0.00 38.49 1.98
7552 7820 2.840651 ACTGGCAAGGCACTAGTAGATT 59.159 45.455 3.59 0.00 38.49 2.40
7553 7821 3.201290 CTGGCAAGGCACTAGTAGATTG 58.799 50.000 3.59 1.97 38.49 2.67
7554 7822 1.943340 GGCAAGGCACTAGTAGATTGC 59.057 52.381 21.21 21.21 38.49 3.56
7555 7823 2.632377 GCAAGGCACTAGTAGATTGCA 58.368 47.619 23.05 0.00 41.92 4.08
7556 7824 3.209410 GCAAGGCACTAGTAGATTGCAT 58.791 45.455 23.05 8.05 41.92 3.96
7557 7825 3.249559 GCAAGGCACTAGTAGATTGCATC 59.750 47.826 23.05 3.05 41.92 3.91
7558 7826 4.701765 CAAGGCACTAGTAGATTGCATCT 58.298 43.478 13.14 0.00 38.49 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.506938 AGAGGAACTTCATGAGATTTGGAAAAA 59.493 33.333 0.00 0.00 41.55 1.94
9 10 7.006509 AGAGGAACTTCATGAGATTTGGAAAA 58.993 34.615 0.00 0.00 41.55 2.29
10 11 6.546484 AGAGGAACTTCATGAGATTTGGAAA 58.454 36.000 0.00 0.00 41.55 3.13
11 12 6.131972 AGAGGAACTTCATGAGATTTGGAA 57.868 37.500 0.00 0.00 41.55 3.53
12 13 5.768980 AGAGGAACTTCATGAGATTTGGA 57.231 39.130 0.00 0.00 41.55 3.53
13 14 6.830873 AAAGAGGAACTTCATGAGATTTGG 57.169 37.500 0.00 0.00 41.55 3.28
17 18 9.525826 ACAAATTAAAGAGGAACTTCATGAGAT 57.474 29.630 0.00 0.00 41.55 2.75
18 19 8.924511 ACAAATTAAAGAGGAACTTCATGAGA 57.075 30.769 0.00 0.00 41.55 3.27
19 20 9.971922 AAACAAATTAAAGAGGAACTTCATGAG 57.028 29.630 0.00 0.00 41.55 2.90
20 21 9.965824 GAAACAAATTAAAGAGGAACTTCATGA 57.034 29.630 0.00 0.00 41.55 3.07
21 22 9.748708 TGAAACAAATTAAAGAGGAACTTCATG 57.251 29.630 0.00 0.00 41.55 3.07
23 24 9.965824 GATGAAACAAATTAAAGAGGAACTTCA 57.034 29.630 0.00 0.00 41.55 3.02
24 25 9.411801 GGATGAAACAAATTAAAGAGGAACTTC 57.588 33.333 0.00 0.00 41.55 3.01
25 26 9.147732 AGGATGAAACAAATTAAAGAGGAACTT 57.852 29.630 0.00 0.00 41.55 2.66
29 30 9.243105 CCTTAGGATGAAACAAATTAAAGAGGA 57.757 33.333 0.00 0.00 0.00 3.71
30 31 9.243105 TCCTTAGGATGAAACAAATTAAAGAGG 57.757 33.333 0.00 0.00 0.00 3.69
54 55 7.992754 AATAGAACAAATGCTGAGGATATCC 57.007 36.000 14.41 14.41 0.00 2.59
55 56 9.674824 CAAAATAGAACAAATGCTGAGGATATC 57.325 33.333 0.00 0.00 0.00 1.63
56 57 9.193806 ACAAAATAGAACAAATGCTGAGGATAT 57.806 29.630 0.00 0.00 0.00 1.63
57 58 8.579850 ACAAAATAGAACAAATGCTGAGGATA 57.420 30.769 0.00 0.00 0.00 2.59
58 59 7.472334 ACAAAATAGAACAAATGCTGAGGAT 57.528 32.000 0.00 0.00 0.00 3.24
59 60 6.899393 ACAAAATAGAACAAATGCTGAGGA 57.101 33.333 0.00 0.00 0.00 3.71
60 61 7.115378 GTGAACAAAATAGAACAAATGCTGAGG 59.885 37.037 0.00 0.00 0.00 3.86
61 62 7.648908 TGTGAACAAAATAGAACAAATGCTGAG 59.351 33.333 0.00 0.00 0.00 3.35
62 63 7.487484 TGTGAACAAAATAGAACAAATGCTGA 58.513 30.769 0.00 0.00 0.00 4.26
63 64 7.648908 TCTGTGAACAAAATAGAACAAATGCTG 59.351 33.333 0.00 0.00 0.00 4.41
64 65 7.715657 TCTGTGAACAAAATAGAACAAATGCT 58.284 30.769 0.00 0.00 0.00 3.79
65 66 7.928908 TCTGTGAACAAAATAGAACAAATGC 57.071 32.000 0.00 0.00 0.00 3.56
66 67 9.734620 TCTTCTGTGAACAAAATAGAACAAATG 57.265 29.630 0.00 0.00 0.00 2.32
68 69 9.734620 CATCTTCTGTGAACAAAATAGAACAAA 57.265 29.630 0.00 0.00 0.00 2.83
69 70 8.902806 ACATCTTCTGTGAACAAAATAGAACAA 58.097 29.630 0.00 0.00 36.48 2.83
70 71 8.450578 ACATCTTCTGTGAACAAAATAGAACA 57.549 30.769 0.00 0.00 36.48 3.18
71 72 8.778358 AGACATCTTCTGTGAACAAAATAGAAC 58.222 33.333 0.00 0.00 38.54 3.01
72 73 8.908786 AGACATCTTCTGTGAACAAAATAGAA 57.091 30.769 0.00 0.00 38.54 2.10
73 74 9.645059 CTAGACATCTTCTGTGAACAAAATAGA 57.355 33.333 0.00 0.00 38.54 1.98
74 75 9.645059 TCTAGACATCTTCTGTGAACAAAATAG 57.355 33.333 0.00 0.00 38.54 1.73
75 76 9.996554 TTCTAGACATCTTCTGTGAACAAAATA 57.003 29.630 0.00 0.00 38.54 1.40
76 77 8.908786 TTCTAGACATCTTCTGTGAACAAAAT 57.091 30.769 0.00 0.00 38.54 1.82
77 78 8.908786 ATTCTAGACATCTTCTGTGAACAAAA 57.091 30.769 0.00 0.00 38.54 2.44
79 80 9.809096 GATATTCTAGACATCTTCTGTGAACAA 57.191 33.333 0.00 0.00 38.54 2.83
80 81 8.971073 TGATATTCTAGACATCTTCTGTGAACA 58.029 33.333 12.53 0.00 38.54 3.18
81 82 9.809096 TTGATATTCTAGACATCTTCTGTGAAC 57.191 33.333 12.53 0.00 38.54 3.18
127 128 5.726980 AACATAGAAGCTGCCATGAAAAA 57.273 34.783 7.17 0.00 0.00 1.94
128 129 6.832520 TTAACATAGAAGCTGCCATGAAAA 57.167 33.333 7.17 0.00 0.00 2.29
129 130 6.681120 GCATTAACATAGAAGCTGCCATGAAA 60.681 38.462 7.17 1.62 0.00 2.69
130 131 5.221106 GCATTAACATAGAAGCTGCCATGAA 60.221 40.000 7.17 0.00 0.00 2.57
131 132 4.276678 GCATTAACATAGAAGCTGCCATGA 59.723 41.667 7.17 0.00 0.00 3.07
132 133 4.277672 AGCATTAACATAGAAGCTGCCATG 59.722 41.667 0.00 0.00 0.00 3.66
133 134 4.467769 AGCATTAACATAGAAGCTGCCAT 58.532 39.130 0.00 0.00 0.00 4.40
134 135 3.879295 GAGCATTAACATAGAAGCTGCCA 59.121 43.478 0.00 0.00 31.61 4.92
135 136 3.251972 GGAGCATTAACATAGAAGCTGCC 59.748 47.826 0.00 0.00 34.90 4.85
136 137 3.879295 TGGAGCATTAACATAGAAGCTGC 59.121 43.478 0.00 0.00 40.26 5.25
137 138 4.274459 GGTGGAGCATTAACATAGAAGCTG 59.726 45.833 0.00 0.00 31.61 4.24
138 139 4.455606 GGTGGAGCATTAACATAGAAGCT 58.544 43.478 0.00 0.00 34.61 3.74
139 140 3.565902 GGGTGGAGCATTAACATAGAAGC 59.434 47.826 0.00 0.00 0.00 3.86
140 141 5.041191 AGGGTGGAGCATTAACATAGAAG 57.959 43.478 0.00 0.00 0.00 2.85
141 142 5.450818 AAGGGTGGAGCATTAACATAGAA 57.549 39.130 0.00 0.00 0.00 2.10
142 143 5.045213 TGAAAGGGTGGAGCATTAACATAGA 60.045 40.000 0.00 0.00 0.00 1.98
143 144 5.066505 GTGAAAGGGTGGAGCATTAACATAG 59.933 44.000 0.00 0.00 0.00 2.23
144 145 4.947388 GTGAAAGGGTGGAGCATTAACATA 59.053 41.667 0.00 0.00 0.00 2.29
145 146 3.763897 GTGAAAGGGTGGAGCATTAACAT 59.236 43.478 0.00 0.00 0.00 2.71
146 147 3.153919 GTGAAAGGGTGGAGCATTAACA 58.846 45.455 0.00 0.00 0.00 2.41
147 148 2.492088 GGTGAAAGGGTGGAGCATTAAC 59.508 50.000 0.00 0.00 0.00 2.01
148 149 2.109128 TGGTGAAAGGGTGGAGCATTAA 59.891 45.455 0.00 0.00 0.00 1.40
149 150 1.707989 TGGTGAAAGGGTGGAGCATTA 59.292 47.619 0.00 0.00 0.00 1.90
150 151 0.482446 TGGTGAAAGGGTGGAGCATT 59.518 50.000 0.00 0.00 0.00 3.56
151 152 0.038744 CTGGTGAAAGGGTGGAGCAT 59.961 55.000 0.00 0.00 0.00 3.79
152 153 1.455849 CTGGTGAAAGGGTGGAGCA 59.544 57.895 0.00 0.00 0.00 4.26
153 154 1.973812 GCTGGTGAAAGGGTGGAGC 60.974 63.158 0.00 0.00 0.00 4.70
154 155 0.111253 AAGCTGGTGAAAGGGTGGAG 59.889 55.000 0.00 0.00 0.00 3.86
155 156 0.110486 GAAGCTGGTGAAAGGGTGGA 59.890 55.000 0.00 0.00 0.00 4.02
156 157 0.895559 GGAAGCTGGTGAAAGGGTGG 60.896 60.000 0.00 0.00 0.00 4.61
157 158 0.111253 AGGAAGCTGGTGAAAGGGTG 59.889 55.000 0.00 0.00 0.00 4.61
158 159 1.742308 TAGGAAGCTGGTGAAAGGGT 58.258 50.000 0.00 0.00 0.00 4.34
159 160 2.820197 GTTTAGGAAGCTGGTGAAAGGG 59.180 50.000 0.00 0.00 0.00 3.95
160 161 3.486383 TGTTTAGGAAGCTGGTGAAAGG 58.514 45.455 0.00 0.00 0.00 3.11
161 162 4.137543 ACTGTTTAGGAAGCTGGTGAAAG 58.862 43.478 0.00 0.00 0.00 2.62
162 163 4.164843 ACTGTTTAGGAAGCTGGTGAAA 57.835 40.909 0.00 0.00 0.00 2.69
163 164 3.857157 ACTGTTTAGGAAGCTGGTGAA 57.143 42.857 0.00 0.00 0.00 3.18
164 165 3.857157 AACTGTTTAGGAAGCTGGTGA 57.143 42.857 0.00 0.00 0.00 4.02
165 166 5.063880 ACTAAACTGTTTAGGAAGCTGGTG 58.936 41.667 32.26 13.52 45.36 4.17
166 167 5.071923 AGACTAAACTGTTTAGGAAGCTGGT 59.928 40.000 32.26 17.10 45.36 4.00
167 168 5.552178 AGACTAAACTGTTTAGGAAGCTGG 58.448 41.667 32.26 14.64 45.36 4.85
168 169 8.603242 TTAAGACTAAACTGTTTAGGAAGCTG 57.397 34.615 32.26 15.21 45.36 4.24
169 170 9.053840 GTTTAAGACTAAACTGTTTAGGAAGCT 57.946 33.333 32.26 23.17 45.36 3.74
182 183 6.038936 TGAAACCTGGCAGTTTAAGACTAAAC 59.961 38.462 14.43 0.47 44.94 2.01
183 184 6.123651 TGAAACCTGGCAGTTTAAGACTAAA 58.876 36.000 14.43 0.00 40.01 1.85
184 185 5.686753 TGAAACCTGGCAGTTTAAGACTAA 58.313 37.500 14.43 0.00 40.01 2.24
185 186 5.298989 TGAAACCTGGCAGTTTAAGACTA 57.701 39.130 14.43 0.00 40.01 2.59
186 187 4.164843 TGAAACCTGGCAGTTTAAGACT 57.835 40.909 14.43 0.00 40.01 3.24
187 188 4.911514 TTGAAACCTGGCAGTTTAAGAC 57.088 40.909 14.43 3.58 40.01 3.01
188 189 5.183140 GCTATTGAAACCTGGCAGTTTAAGA 59.817 40.000 14.43 2.00 40.01 2.10
189 190 5.048083 TGCTATTGAAACCTGGCAGTTTAAG 60.048 40.000 14.43 10.09 40.01 1.85
190 191 4.830046 TGCTATTGAAACCTGGCAGTTTAA 59.170 37.500 14.43 5.68 40.01 1.52
191 192 4.402829 TGCTATTGAAACCTGGCAGTTTA 58.597 39.130 14.43 0.00 40.01 2.01
192 193 3.230134 TGCTATTGAAACCTGGCAGTTT 58.770 40.909 14.43 13.39 42.56 2.66
193 194 2.821969 CTGCTATTGAAACCTGGCAGTT 59.178 45.455 14.43 1.34 41.21 3.16
194 195 2.440409 CTGCTATTGAAACCTGGCAGT 58.560 47.619 14.43 0.00 41.21 4.40
195 196 1.133790 GCTGCTATTGAAACCTGGCAG 59.866 52.381 7.75 7.75 46.51 4.85
196 197 1.176527 GCTGCTATTGAAACCTGGCA 58.823 50.000 0.00 0.00 0.00 4.92
197 198 1.133790 CTGCTGCTATTGAAACCTGGC 59.866 52.381 0.00 0.00 0.00 4.85
198 199 1.747355 CCTGCTGCTATTGAAACCTGG 59.253 52.381 0.00 0.00 0.00 4.45
199 200 1.747355 CCCTGCTGCTATTGAAACCTG 59.253 52.381 0.00 0.00 0.00 4.00
200 201 1.341383 CCCCTGCTGCTATTGAAACCT 60.341 52.381 0.00 0.00 0.00 3.50
201 202 1.106285 CCCCTGCTGCTATTGAAACC 58.894 55.000 0.00 0.00 0.00 3.27
202 203 1.474077 CACCCCTGCTGCTATTGAAAC 59.526 52.381 0.00 0.00 0.00 2.78
203 204 1.616725 CCACCCCTGCTGCTATTGAAA 60.617 52.381 0.00 0.00 0.00 2.69
204 205 0.034186 CCACCCCTGCTGCTATTGAA 60.034 55.000 0.00 0.00 0.00 2.69
205 206 1.609239 CCACCCCTGCTGCTATTGA 59.391 57.895 0.00 0.00 0.00 2.57
206 207 1.454479 CCCACCCCTGCTGCTATTG 60.454 63.158 0.00 0.00 0.00 1.90
207 208 1.509548 AACCCACCCCTGCTGCTATT 61.510 55.000 0.00 0.00 0.00 1.73
208 209 1.509548 AAACCCACCCCTGCTGCTAT 61.510 55.000 0.00 0.00 0.00 2.97
209 210 2.137177 GAAACCCACCCCTGCTGCTA 62.137 60.000 0.00 0.00 0.00 3.49
210 211 3.511610 AAACCCACCCCTGCTGCT 61.512 61.111 0.00 0.00 0.00 4.24
211 212 2.991540 GAAACCCACCCCTGCTGC 60.992 66.667 0.00 0.00 0.00 5.25
212 213 2.283173 GGAAACCCACCCCTGCTG 60.283 66.667 0.00 0.00 0.00 4.41
213 214 2.091283 AAGGAAACCCACCCCTGCT 61.091 57.895 0.00 0.00 0.00 4.24
214 215 1.908299 CAAGGAAACCCACCCCTGC 60.908 63.158 0.00 0.00 0.00 4.85
215 216 0.251341 CTCAAGGAAACCCACCCCTG 60.251 60.000 0.00 0.00 0.00 4.45
216 217 0.701310 ACTCAAGGAAACCCACCCCT 60.701 55.000 0.00 0.00 0.00 4.79
217 218 1.069775 TACTCAAGGAAACCCACCCC 58.930 55.000 0.00 0.00 0.00 4.95
218 219 2.963599 TTACTCAAGGAAACCCACCC 57.036 50.000 0.00 0.00 0.00 4.61
219 220 4.212716 AGTTTTACTCAAGGAAACCCACC 58.787 43.478 7.31 0.00 34.63 4.61
220 221 4.024302 CGAGTTTTACTCAAGGAAACCCAC 60.024 45.833 7.52 0.00 45.30 4.61
221 222 4.131596 CGAGTTTTACTCAAGGAAACCCA 58.868 43.478 7.52 0.00 45.30 4.51
222 223 3.501062 CCGAGTTTTACTCAAGGAAACCC 59.499 47.826 7.52 0.00 45.30 4.11
223 224 4.024302 CACCGAGTTTTACTCAAGGAAACC 60.024 45.833 7.52 0.00 45.30 3.27
224 225 4.024302 CCACCGAGTTTTACTCAAGGAAAC 60.024 45.833 7.52 0.00 45.30 2.78
225 226 4.131596 CCACCGAGTTTTACTCAAGGAAA 58.868 43.478 7.52 0.00 45.30 3.13
226 227 3.495453 CCCACCGAGTTTTACTCAAGGAA 60.495 47.826 7.52 0.00 45.30 3.36
227 228 2.038033 CCCACCGAGTTTTACTCAAGGA 59.962 50.000 7.52 0.00 45.30 3.36
228 229 2.423577 CCCACCGAGTTTTACTCAAGG 58.576 52.381 7.52 3.98 45.30 3.61
229 230 2.224450 ACCCCACCGAGTTTTACTCAAG 60.224 50.000 7.52 1.00 45.30 3.02
230 231 1.770061 ACCCCACCGAGTTTTACTCAA 59.230 47.619 7.52 0.00 45.30 3.02
231 232 1.071071 CACCCCACCGAGTTTTACTCA 59.929 52.381 7.52 0.00 45.30 3.41
232 233 1.345415 TCACCCCACCGAGTTTTACTC 59.655 52.381 0.00 0.00 41.71 2.59
233 234 1.071228 GTCACCCCACCGAGTTTTACT 59.929 52.381 0.00 0.00 0.00 2.24
234 235 1.516161 GTCACCCCACCGAGTTTTAC 58.484 55.000 0.00 0.00 0.00 2.01
235 236 0.397564 GGTCACCCCACCGAGTTTTA 59.602 55.000 0.00 0.00 0.00 1.52
236 237 1.149854 GGTCACCCCACCGAGTTTT 59.850 57.895 0.00 0.00 0.00 2.43
237 238 1.768888 AGGTCACCCCACCGAGTTT 60.769 57.895 0.00 0.00 41.90 2.66
238 239 2.122547 AGGTCACCCCACCGAGTT 60.123 61.111 0.00 0.00 41.90 3.01
239 240 2.923035 CAGGTCACCCCACCGAGT 60.923 66.667 0.00 0.00 41.90 4.18
240 241 2.450479 GAACAGGTCACCCCACCGAG 62.450 65.000 0.00 0.00 41.90 4.63
241 242 2.446994 AACAGGTCACCCCACCGA 60.447 61.111 0.00 0.00 41.90 4.69
242 243 2.032071 GAACAGGTCACCCCACCG 59.968 66.667 0.00 0.00 41.90 4.94
243 244 1.716028 AAGGAACAGGTCACCCCACC 61.716 60.000 0.00 0.00 36.58 4.61
244 245 0.250770 GAAGGAACAGGTCACCCCAC 60.251 60.000 0.00 0.00 34.66 4.61
245 246 1.764571 CGAAGGAACAGGTCACCCCA 61.765 60.000 0.00 0.00 34.66 4.96
246 247 1.003718 CGAAGGAACAGGTCACCCC 60.004 63.158 0.00 0.00 0.00 4.95
247 248 0.613777 ATCGAAGGAACAGGTCACCC 59.386 55.000 0.00 0.00 0.00 4.61
248 249 2.076863 CAATCGAAGGAACAGGTCACC 58.923 52.381 0.00 0.00 0.00 4.02
249 250 2.767505 ACAATCGAAGGAACAGGTCAC 58.232 47.619 0.00 0.00 0.00 3.67
250 251 4.610605 TTACAATCGAAGGAACAGGTCA 57.389 40.909 0.00 0.00 0.00 4.02
251 252 5.163754 CCATTTACAATCGAAGGAACAGGTC 60.164 44.000 0.00 0.00 0.00 3.85
252 253 4.700213 CCATTTACAATCGAAGGAACAGGT 59.300 41.667 0.00 0.00 0.00 4.00
253 254 4.438744 GCCATTTACAATCGAAGGAACAGG 60.439 45.833 0.00 0.00 0.00 4.00
254 255 4.662145 GCCATTTACAATCGAAGGAACAG 58.338 43.478 0.00 0.00 0.00 3.16
255 256 3.126171 CGCCATTTACAATCGAAGGAACA 59.874 43.478 0.00 0.00 0.00 3.18
256 257 3.372822 TCGCCATTTACAATCGAAGGAAC 59.627 43.478 0.00 0.00 0.00 3.62
257 258 3.372822 GTCGCCATTTACAATCGAAGGAA 59.627 43.478 0.00 0.00 0.00 3.36
258 259 2.933906 GTCGCCATTTACAATCGAAGGA 59.066 45.455 0.00 0.00 0.00 3.36
259 260 2.936498 AGTCGCCATTTACAATCGAAGG 59.064 45.455 0.00 0.00 0.00 3.46
260 261 4.600012 AAGTCGCCATTTACAATCGAAG 57.400 40.909 0.00 0.00 0.00 3.79
261 262 5.172934 AGTAAGTCGCCATTTACAATCGAA 58.827 37.500 0.00 0.00 33.30 3.71
262 263 4.751060 AGTAAGTCGCCATTTACAATCGA 58.249 39.130 0.02 0.00 33.30 3.59
263 264 5.464965 AAGTAAGTCGCCATTTACAATCG 57.535 39.130 0.02 0.00 33.30 3.34
285 286 3.961408 TCCCACCGATTTCTTTCCAAAAA 59.039 39.130 0.00 0.00 0.00 1.94
286 287 3.567397 TCCCACCGATTTCTTTCCAAAA 58.433 40.909 0.00 0.00 0.00 2.44
287 288 3.153919 CTCCCACCGATTTCTTTCCAAA 58.846 45.455 0.00 0.00 0.00 3.28
288 289 2.790433 CTCCCACCGATTTCTTTCCAA 58.210 47.619 0.00 0.00 0.00 3.53
289 290 1.613255 GCTCCCACCGATTTCTTTCCA 60.613 52.381 0.00 0.00 0.00 3.53
290 291 1.095600 GCTCCCACCGATTTCTTTCC 58.904 55.000 0.00 0.00 0.00 3.13
291 292 0.727398 CGCTCCCACCGATTTCTTTC 59.273 55.000 0.00 0.00 0.00 2.62
292 293 0.323629 TCGCTCCCACCGATTTCTTT 59.676 50.000 0.00 0.00 0.00 2.52
293 294 0.108138 CTCGCTCCCACCGATTTCTT 60.108 55.000 0.00 0.00 33.83 2.52
294 295 0.970937 TCTCGCTCCCACCGATTTCT 60.971 55.000 0.00 0.00 33.83 2.52
295 296 0.528684 CTCTCGCTCCCACCGATTTC 60.529 60.000 0.00 0.00 33.83 2.17
296 297 1.517832 CTCTCGCTCCCACCGATTT 59.482 57.895 0.00 0.00 33.83 2.17
297 298 2.427245 CCTCTCGCTCCCACCGATT 61.427 63.158 0.00 0.00 33.83 3.34
298 299 2.835431 CCTCTCGCTCCCACCGAT 60.835 66.667 0.00 0.00 33.83 4.18
299 300 4.361971 ACCTCTCGCTCCCACCGA 62.362 66.667 0.00 0.00 0.00 4.69
300 301 3.827898 GACCTCTCGCTCCCACCG 61.828 72.222 0.00 0.00 0.00 4.94
301 302 3.827898 CGACCTCTCGCTCCCACC 61.828 72.222 0.00 0.00 31.91 4.61
302 303 3.063084 ACGACCTCTCGCTCCCAC 61.063 66.667 0.00 0.00 44.33 4.61
303 304 3.062466 CACGACCTCTCGCTCCCA 61.062 66.667 0.00 0.00 44.33 4.37
304 305 3.063084 ACACGACCTCTCGCTCCC 61.063 66.667 0.00 0.00 44.33 4.30
305 306 2.179517 CACACGACCTCTCGCTCC 59.820 66.667 0.00 0.00 44.33 4.70
306 307 1.135731 CTCACACGACCTCTCGCTC 59.864 63.158 0.00 0.00 44.33 5.03
307 308 2.336478 CCTCACACGACCTCTCGCT 61.336 63.158 0.00 0.00 44.33 4.93
308 309 2.179517 CCTCACACGACCTCTCGC 59.820 66.667 0.00 0.00 44.33 5.03
309 310 2.701780 CCCCTCACACGACCTCTCG 61.702 68.421 0.00 0.00 46.06 4.04
310 311 2.352032 CCCCCTCACACGACCTCTC 61.352 68.421 0.00 0.00 0.00 3.20
311 312 2.283966 CCCCCTCACACGACCTCT 60.284 66.667 0.00 0.00 0.00 3.69
312 313 2.603776 ACCCCCTCACACGACCTC 60.604 66.667 0.00 0.00 0.00 3.85
313 314 2.923035 CACCCCCTCACACGACCT 60.923 66.667 0.00 0.00 0.00 3.85
314 315 4.699522 GCACCCCCTCACACGACC 62.700 72.222 0.00 0.00 0.00 4.79
325 326 4.114997 CATTGGTTCGCGCACCCC 62.115 66.667 25.04 10.54 35.73 4.95
326 327 3.053291 TCATTGGTTCGCGCACCC 61.053 61.111 25.04 13.08 35.73 4.61
327 328 2.175811 GTCATTGGTTCGCGCACC 59.824 61.111 21.57 21.57 37.34 5.01
328 329 2.165362 TTCGTCATTGGTTCGCGCAC 62.165 55.000 8.75 0.00 0.00 5.34
329 330 1.956678 TTCGTCATTGGTTCGCGCA 60.957 52.632 8.75 0.00 0.00 6.09
330 331 1.509162 GTTCGTCATTGGTTCGCGC 60.509 57.895 0.00 0.00 0.00 6.86
331 332 0.233590 TTGTTCGTCATTGGTTCGCG 59.766 50.000 0.00 0.00 0.00 5.87
332 333 2.041244 GTTTGTTCGTCATTGGTTCGC 58.959 47.619 0.00 0.00 0.00 4.70
333 334 3.541711 GAGTTTGTTCGTCATTGGTTCG 58.458 45.455 0.00 0.00 0.00 3.95
334 335 3.304458 GGGAGTTTGTTCGTCATTGGTTC 60.304 47.826 0.00 0.00 0.00 3.62
335 336 2.621526 GGGAGTTTGTTCGTCATTGGTT 59.378 45.455 0.00 0.00 0.00 3.67
336 337 2.227194 GGGAGTTTGTTCGTCATTGGT 58.773 47.619 0.00 0.00 0.00 3.67
337 338 2.226330 TGGGAGTTTGTTCGTCATTGG 58.774 47.619 0.00 0.00 0.00 3.16
338 339 2.226437 CCTGGGAGTTTGTTCGTCATTG 59.774 50.000 0.00 0.00 0.00 2.82
339 340 2.105821 TCCTGGGAGTTTGTTCGTCATT 59.894 45.455 0.00 0.00 0.00 2.57
340 341 1.697432 TCCTGGGAGTTTGTTCGTCAT 59.303 47.619 0.00 0.00 0.00 3.06
341 342 1.124780 TCCTGGGAGTTTGTTCGTCA 58.875 50.000 0.00 0.00 0.00 4.35
342 343 2.249844 TTCCTGGGAGTTTGTTCGTC 57.750 50.000 0.00 0.00 0.00 4.20
343 344 2.721425 TTTCCTGGGAGTTTGTTCGT 57.279 45.000 0.00 0.00 0.00 3.85
344 345 3.490249 GGTTTTTCCTGGGAGTTTGTTCG 60.490 47.826 0.00 0.00 0.00 3.95
345 346 3.449377 TGGTTTTTCCTGGGAGTTTGTTC 59.551 43.478 0.00 0.00 37.07 3.18
346 347 3.445987 TGGTTTTTCCTGGGAGTTTGTT 58.554 40.909 0.00 0.00 37.07 2.83
347 348 3.108847 TGGTTTTTCCTGGGAGTTTGT 57.891 42.857 0.00 0.00 37.07 2.83
348 349 4.441792 CTTTGGTTTTTCCTGGGAGTTTG 58.558 43.478 0.00 0.00 37.07 2.93
349 350 3.454447 CCTTTGGTTTTTCCTGGGAGTTT 59.546 43.478 0.00 0.00 37.07 2.66
350 351 3.038280 CCTTTGGTTTTTCCTGGGAGTT 58.962 45.455 0.00 0.00 37.07 3.01
351 352 2.677914 CCTTTGGTTTTTCCTGGGAGT 58.322 47.619 0.00 0.00 37.07 3.85
352 353 1.970640 CCCTTTGGTTTTTCCTGGGAG 59.029 52.381 0.00 0.00 41.08 4.30
353 354 1.292546 ACCCTTTGGTTTTTCCTGGGA 59.707 47.619 0.00 0.00 44.75 4.37
354 355 1.416030 CACCCTTTGGTTTTTCCTGGG 59.584 52.381 0.00 0.00 44.75 4.45
355 356 2.365293 CTCACCCTTTGGTTTTTCCTGG 59.635 50.000 0.00 0.00 44.75 4.45
356 357 3.295973 TCTCACCCTTTGGTTTTTCCTG 58.704 45.455 0.00 0.00 44.75 3.86
357 358 3.680777 TCTCACCCTTTGGTTTTTCCT 57.319 42.857 0.00 0.00 44.75 3.36
358 359 3.006859 CCATCTCACCCTTTGGTTTTTCC 59.993 47.826 0.00 0.00 44.75 3.13
359 360 3.554960 GCCATCTCACCCTTTGGTTTTTC 60.555 47.826 0.00 0.00 44.75 2.29
360 361 2.368548 GCCATCTCACCCTTTGGTTTTT 59.631 45.455 0.00 0.00 44.75 1.94
361 362 1.970640 GCCATCTCACCCTTTGGTTTT 59.029 47.619 0.00 0.00 44.75 2.43
362 363 1.632589 GCCATCTCACCCTTTGGTTT 58.367 50.000 0.00 0.00 44.75 3.27
363 364 0.609131 CGCCATCTCACCCTTTGGTT 60.609 55.000 0.00 0.00 44.75 3.67
365 366 1.750399 CCGCCATCTCACCCTTTGG 60.750 63.158 0.00 0.00 37.80 3.28
366 367 1.750399 CCCGCCATCTCACCCTTTG 60.750 63.158 0.00 0.00 0.00 2.77
367 368 1.915078 CTCCCGCCATCTCACCCTTT 61.915 60.000 0.00 0.00 0.00 3.11
368 369 2.285368 TCCCGCCATCTCACCCTT 60.285 61.111 0.00 0.00 0.00 3.95
369 370 2.765807 CTCCCGCCATCTCACCCT 60.766 66.667 0.00 0.00 0.00 4.34
370 371 3.866582 CCTCCCGCCATCTCACCC 61.867 72.222 0.00 0.00 0.00 4.61
371 372 1.910580 TTTCCTCCCGCCATCTCACC 61.911 60.000 0.00 0.00 0.00 4.02
372 373 0.181350 ATTTCCTCCCGCCATCTCAC 59.819 55.000 0.00 0.00 0.00 3.51
373 374 1.801242 TATTTCCTCCCGCCATCTCA 58.199 50.000 0.00 0.00 0.00 3.27
374 375 2.930826 TTATTTCCTCCCGCCATCTC 57.069 50.000 0.00 0.00 0.00 2.75
375 376 3.053619 AGTTTTATTTCCTCCCGCCATCT 60.054 43.478 0.00 0.00 0.00 2.90
376 377 3.066760 CAGTTTTATTTCCTCCCGCCATC 59.933 47.826 0.00 0.00 0.00 3.51
377 378 3.023832 CAGTTTTATTTCCTCCCGCCAT 58.976 45.455 0.00 0.00 0.00 4.40
378 379 2.040545 TCAGTTTTATTTCCTCCCGCCA 59.959 45.455 0.00 0.00 0.00 5.69
379 380 2.718563 TCAGTTTTATTTCCTCCCGCC 58.281 47.619 0.00 0.00 0.00 6.13
380 381 3.425758 CGTTCAGTTTTATTTCCTCCCGC 60.426 47.826 0.00 0.00 0.00 6.13
381 382 3.998341 TCGTTCAGTTTTATTTCCTCCCG 59.002 43.478 0.00 0.00 0.00 5.14
382 383 5.952526 TTCGTTCAGTTTTATTTCCTCCC 57.047 39.130 0.00 0.00 0.00 4.30
383 384 9.902196 TTATTTTCGTTCAGTTTTATTTCCTCC 57.098 29.630 0.00 0.00 0.00 4.30
392 393 9.511144 ACTTCGATTTTATTTTCGTTCAGTTTT 57.489 25.926 0.00 0.00 36.74 2.43
394 395 9.590088 GTACTTCGATTTTATTTTCGTTCAGTT 57.410 29.630 0.00 0.00 36.74 3.16
395 396 8.225777 GGTACTTCGATTTTATTTTCGTTCAGT 58.774 33.333 0.00 0.00 36.74 3.41
396 397 7.691050 GGGTACTTCGATTTTATTTTCGTTCAG 59.309 37.037 0.00 0.00 36.74 3.02
397 398 7.520686 GGGTACTTCGATTTTATTTTCGTTCA 58.479 34.615 0.00 0.00 36.74 3.18
398 399 6.679919 CGGGTACTTCGATTTTATTTTCGTTC 59.320 38.462 3.69 0.00 36.74 3.95
399 400 6.402442 CCGGGTACTTCGATTTTATTTTCGTT 60.402 38.462 9.94 0.00 36.74 3.85
400 401 5.063817 CCGGGTACTTCGATTTTATTTTCGT 59.936 40.000 9.94 0.00 36.74 3.85
401 402 5.495502 CCGGGTACTTCGATTTTATTTTCG 58.504 41.667 9.94 0.00 36.72 3.46
402 403 5.065602 AGCCGGGTACTTCGATTTTATTTTC 59.934 40.000 3.10 0.00 0.00 2.29
403 404 4.945543 AGCCGGGTACTTCGATTTTATTTT 59.054 37.500 3.10 0.00 0.00 1.82
404 405 4.520179 AGCCGGGTACTTCGATTTTATTT 58.480 39.130 3.10 0.00 0.00 1.40
405 406 4.146745 AGCCGGGTACTTCGATTTTATT 57.853 40.909 3.10 0.00 0.00 1.40
406 407 3.832615 AGCCGGGTACTTCGATTTTAT 57.167 42.857 3.10 0.00 0.00 1.40
407 408 4.942761 ATAGCCGGGTACTTCGATTTTA 57.057 40.909 17.09 0.00 0.00 1.52
408 409 3.832615 ATAGCCGGGTACTTCGATTTT 57.167 42.857 17.09 0.00 0.00 1.82
409 410 3.832615 AATAGCCGGGTACTTCGATTT 57.167 42.857 17.09 1.15 0.00 2.17
410 411 4.343239 AGTTAATAGCCGGGTACTTCGATT 59.657 41.667 17.09 8.91 0.00 3.34
411 412 3.893813 AGTTAATAGCCGGGTACTTCGAT 59.106 43.478 17.09 0.00 0.00 3.59
412 413 3.067180 CAGTTAATAGCCGGGTACTTCGA 59.933 47.826 17.09 0.00 0.00 3.71
413 414 3.378339 CAGTTAATAGCCGGGTACTTCG 58.622 50.000 17.09 0.00 0.00 3.79
414 415 3.129109 GCAGTTAATAGCCGGGTACTTC 58.871 50.000 17.09 1.46 0.00 3.01
415 416 2.770232 AGCAGTTAATAGCCGGGTACTT 59.230 45.455 17.09 13.46 0.00 2.24
416 417 2.395619 AGCAGTTAATAGCCGGGTACT 58.604 47.619 17.09 7.90 0.00 2.73
417 418 2.904697 AGCAGTTAATAGCCGGGTAC 57.095 50.000 17.09 5.76 0.00 3.34
418 419 2.223876 CGAAGCAGTTAATAGCCGGGTA 60.224 50.000 17.06 17.06 0.00 3.69
419 420 1.472728 CGAAGCAGTTAATAGCCGGGT 60.473 52.381 12.58 12.58 0.00 5.28
420 421 1.217882 CGAAGCAGTTAATAGCCGGG 58.782 55.000 2.18 0.00 0.00 5.73
421 422 1.935933 ACGAAGCAGTTAATAGCCGG 58.064 50.000 0.00 0.00 0.00 6.13
422 423 4.357142 TCTAACGAAGCAGTTAATAGCCG 58.643 43.478 0.00 0.00 36.32 5.52
423 424 5.753921 ACATCTAACGAAGCAGTTAATAGCC 59.246 40.000 0.00 0.00 36.32 3.93
424 425 6.830114 ACATCTAACGAAGCAGTTAATAGC 57.170 37.500 0.00 0.00 36.32 2.97
425 426 9.388346 CTCTACATCTAACGAAGCAGTTAATAG 57.612 37.037 0.00 0.00 36.32 1.73
426 427 9.117183 TCTCTACATCTAACGAAGCAGTTAATA 57.883 33.333 0.00 0.00 36.32 0.98
427 428 7.997482 TCTCTACATCTAACGAAGCAGTTAAT 58.003 34.615 0.00 0.00 36.32 1.40
428 429 7.387119 TCTCTACATCTAACGAAGCAGTTAA 57.613 36.000 0.00 0.00 36.32 2.01
429 430 6.997239 TCTCTACATCTAACGAAGCAGTTA 57.003 37.500 0.00 0.00 35.70 2.24
430 431 5.899120 TCTCTACATCTAACGAAGCAGTT 57.101 39.130 0.00 0.00 38.07 3.16
431 432 7.569639 TTATCTCTACATCTAACGAAGCAGT 57.430 36.000 0.00 0.00 0.00 4.40
432 433 6.580791 GCTTATCTCTACATCTAACGAAGCAG 59.419 42.308 0.00 0.00 36.46 4.24
433 434 6.039382 TGCTTATCTCTACATCTAACGAAGCA 59.961 38.462 0.00 0.00 42.22 3.91
434 435 6.439599 TGCTTATCTCTACATCTAACGAAGC 58.560 40.000 0.00 0.00 36.86 3.86
435 436 8.293157 TCATGCTTATCTCTACATCTAACGAAG 58.707 37.037 0.00 0.00 0.00 3.79
436 437 8.166422 TCATGCTTATCTCTACATCTAACGAA 57.834 34.615 0.00 0.00 0.00 3.85
437 438 7.745620 TCATGCTTATCTCTACATCTAACGA 57.254 36.000 0.00 0.00 0.00 3.85
438 439 8.803201 TTTCATGCTTATCTCTACATCTAACG 57.197 34.615 0.00 0.00 0.00 3.18
485 486 1.813859 CGGATAGGCACCTCGTTCA 59.186 57.895 0.00 0.00 0.00 3.18
493 494 0.868406 GTGCATTAGCGGATAGGCAC 59.132 55.000 13.63 13.63 46.23 5.01
494 495 0.599991 CGTGCATTAGCGGATAGGCA 60.600 55.000 0.00 0.00 46.23 4.75
682 683 2.303022 CCGGGATTATGTAGGACAGCAT 59.697 50.000 0.00 0.00 0.00 3.79
721 722 2.747177 TCGGAGGATAAGCTCTTTGGA 58.253 47.619 0.00 0.00 0.00 3.53
760 761 4.157120 ACCCACCGATACTGCGCC 62.157 66.667 4.18 0.00 0.00 6.53
1055 1060 2.841044 GGCGGGGAAGTATCGGGA 60.841 66.667 0.00 0.00 0.00 5.14
1127 1132 6.718454 ATCAGAAAAAGAATCAGAGTCGTG 57.282 37.500 0.00 0.00 0.00 4.35
1300 1305 3.134703 TAGTTGCCGCCCACCCAAA 62.135 57.895 0.00 0.00 0.00 3.28
1383 1389 5.813383 ACTAGCAGTCTACCACTAACAGTA 58.187 41.667 0.00 0.00 32.21 2.74
1458 1464 3.868757 TTCCAGGACTTATCTGTGACG 57.131 47.619 0.00 0.00 0.00 4.35
1466 1472 3.185455 AGAGGCTGTTTCCAGGACTTAT 58.815 45.455 0.00 0.00 39.22 1.73
1526 1534 1.305549 GGGAAGGGTCCGACCACTA 60.306 63.158 19.43 0.00 46.04 2.74
1535 1543 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
1538 1546 3.717294 CACAGGGTCCGGGGAAGG 61.717 72.222 0.00 0.00 0.00 3.46
1539 1547 4.410400 GCACAGGGTCCGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
1542 1550 4.722700 CTTGCACAGGGTCCGGGG 62.723 72.222 0.00 0.00 0.00 5.73
1636 1656 2.158740 TGCACCTAACAAAGCACTACCA 60.159 45.455 0.00 0.00 31.05 3.25
1684 1704 6.934083 CCCCACAAAAATAAAGCACTAAACAT 59.066 34.615 0.00 0.00 0.00 2.71
1738 1758 4.443457 GCAGTCTAAATATGAGCACCCTGA 60.443 45.833 0.00 0.00 0.00 3.86
1878 1899 9.567776 TCAATTAAAGAAACCACTAACATCAGA 57.432 29.630 0.00 0.00 0.00 3.27
2083 2114 3.625764 TGTGGACTAGTGCTGTTCAAAAC 59.374 43.478 15.92 3.32 0.00 2.43
2171 2204 7.363031 TGCCCTCCTCCCTATATTTACTATAG 58.637 42.308 0.00 0.00 39.30 1.31
2209 2246 0.809385 ATATATGCGACCGGACGAGG 59.191 55.000 29.83 1.41 35.09 4.63
2212 2249 2.185262 CATGATATATGCGACCGGACG 58.815 52.381 22.02 22.02 0.00 4.79
2362 2406 7.360361 ACGTCCACAGAAAATCATTTAAAGAC 58.640 34.615 0.00 0.00 0.00 3.01
2593 2642 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2594 2643 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2595 2644 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2596 2645 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2597 2646 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2598 2647 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2599 2648 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2600 2649 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2601 2650 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2602 2651 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2614 2663 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2615 2664 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2616 2665 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2617 2666 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2618 2667 9.733219 ATAACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2619 2668 9.733219 GATAACTACTTTAGTGATCTAAACGCT 57.267 33.333 4.09 0.00 41.55 5.07
2649 2698 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
2650 2699 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
2651 2700 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2663 2712 9.880157 TGTATAAATGTTACTCCCTCTGTAAAC 57.120 33.333 0.00 0.00 32.58 2.01
2664 2713 9.880157 GTGTATAAATGTTACTCCCTCTGTAAA 57.120 33.333 0.00 0.00 32.58 2.01
2665 2714 8.480501 GGTGTATAAATGTTACTCCCTCTGTAA 58.519 37.037 0.00 0.00 30.49 2.41
2666 2715 7.620491 TGGTGTATAAATGTTACTCCCTCTGTA 59.380 37.037 0.00 0.00 34.02 2.74
2667 2716 6.442564 TGGTGTATAAATGTTACTCCCTCTGT 59.557 38.462 0.00 0.00 34.02 3.41
2668 2717 6.884832 TGGTGTATAAATGTTACTCCCTCTG 58.115 40.000 0.00 0.00 34.02 3.35
2669 2718 7.504926 TTGGTGTATAAATGTTACTCCCTCT 57.495 36.000 0.00 0.00 34.02 3.69
2670 2719 8.044908 TCTTTGGTGTATAAATGTTACTCCCTC 58.955 37.037 0.00 0.00 34.02 4.30
2671 2720 7.924541 TCTTTGGTGTATAAATGTTACTCCCT 58.075 34.615 0.00 0.00 34.02 4.20
2672 2721 8.747538 ATCTTTGGTGTATAAATGTTACTCCC 57.252 34.615 0.00 0.00 34.02 4.30
2711 2760 9.639601 TTGTAGACAGTTTAGAGATACACAATG 57.360 33.333 0.00 0.00 0.00 2.82
2767 2816 7.010339 AGGAACATGACCTAATAAGATAGCC 57.990 40.000 12.85 0.00 35.84 3.93
2857 2929 4.836825 TGGGCTTCTTCTCTTCATTACTG 58.163 43.478 0.00 0.00 0.00 2.74
3108 3183 6.420306 CGGTGAAAAATCACATGATTGAAACA 59.580 34.615 7.86 4.50 43.41 2.83
3528 3606 7.417496 ACGTAGTGTCAACTTCCTAAATTTC 57.583 36.000 0.00 0.00 42.51 2.17
3685 3766 1.059098 TGCTATCTATGCTGGTGGGG 58.941 55.000 0.00 0.00 0.00 4.96
4140 4222 8.874816 GGTTATTGAACAGAGAACTAGTCATTC 58.125 37.037 0.00 0.00 37.29 2.67
4352 4434 9.102757 TCTTTCAGATTAGTTCATGTATTCTGC 57.897 33.333 0.00 0.00 31.94 4.26
4586 4668 9.534565 TTGATTAGAGAATTACGAGAATCCTTG 57.465 33.333 0.00 0.00 0.00 3.61
4648 4730 6.966435 AACCATTTTCATAGCAAATTTCCG 57.034 33.333 0.00 0.00 0.00 4.30
4719 4801 1.612726 GCAGCATTGTTCTCTCCACCT 60.613 52.381 0.00 0.00 0.00 4.00
4783 4865 6.990341 ATAAATCCAAAGCCTTTGAATTGC 57.010 33.333 18.59 0.00 43.26 3.56
4793 4875 8.000780 AGATTGTACTGAATAAATCCAAAGCC 57.999 34.615 0.00 0.00 30.83 4.35
4800 4882 7.656137 TCCGCCTAAGATTGTACTGAATAAATC 59.344 37.037 0.00 0.00 0.00 2.17
5956 6039 6.785963 TCCCTCCGTCCTAAAATATAAGATGT 59.214 38.462 0.00 0.00 0.00 3.06
6047 6130 3.150848 TGCAGATGTCGACAGTCATAC 57.849 47.619 24.41 11.16 0.00 2.39
6114 6197 2.611292 GAGAGCATTCGTCCCAAATCAG 59.389 50.000 0.00 0.00 0.00 2.90
6207 6296 8.297290 CGGTCCATTGGGATCATTTAAAGCAA 62.297 42.308 2.09 0.00 45.27 3.91
6271 6446 1.270678 GCGTCCAGGAACAAACTACCT 60.271 52.381 0.00 0.00 34.02 3.08
6272 6447 1.154197 GCGTCCAGGAACAAACTACC 58.846 55.000 0.00 0.00 0.00 3.18
6273 6448 1.873698 TGCGTCCAGGAACAAACTAC 58.126 50.000 0.00 0.00 0.00 2.73
6282 6457 2.037902 TCAGTTTAACATGCGTCCAGGA 59.962 45.455 0.00 0.00 0.00 3.86
6303 6478 2.795329 ACCTGCAGAAACGATGGAATT 58.205 42.857 17.39 0.00 0.00 2.17
6715 6897 4.568380 CCTTGAGATTCAGGGGTTCAATGA 60.568 45.833 0.00 0.00 39.69 2.57
6795 6979 6.220930 GGATGAGCTATACGTCAACCATTAA 58.779 40.000 0.00 0.00 36.04 1.40
6806 6990 2.092323 TCCCATCGGATGAGCTATACG 58.908 52.381 19.30 0.00 44.74 3.06
6854 7038 3.527533 TCCACTTGTACATATGAACGCC 58.472 45.455 10.38 0.00 0.00 5.68
6856 7040 6.093495 ACCAATTCCACTTGTACATATGAACG 59.907 38.462 10.38 0.00 0.00 3.95
6897 7091 4.795970 CAGGTCAACTGTCAACACTAAC 57.204 45.455 0.00 0.00 42.42 2.34
6969 7165 2.898705 CCAGATCAAGTGGTCAGCTAC 58.101 52.381 0.00 0.00 0.00 3.58
7060 7256 1.867363 AGAGCAGACCGGTTCCTTAT 58.133 50.000 9.42 0.00 0.00 1.73
7075 7271 1.549203 TCCATCCAAAAGCCAAGAGC 58.451 50.000 0.00 0.00 44.25 4.09
7333 7530 2.494870 CCACCACCACCACTACTACTAC 59.505 54.545 0.00 0.00 0.00 2.73
7334 7531 2.110543 ACCACCACCACCACTACTACTA 59.889 50.000 0.00 0.00 0.00 1.82
7344 7541 2.236489 TACCTACTACCACCACCACC 57.764 55.000 0.00 0.00 0.00 4.61
7350 7618 7.778185 AGATCACATATTACCTACTACCACC 57.222 40.000 0.00 0.00 0.00 4.61
7373 7641 2.711542 ACCTCCACGGCAAAGAATAAG 58.288 47.619 0.00 0.00 35.61 1.73
7486 7754 2.964209 ACAAAGGAGGACTGACTCTGA 58.036 47.619 0.00 0.00 37.63 3.27
7509 7777 9.378551 CCAGTTTGCTAGTAGTGAATTGTATTA 57.621 33.333 0.00 0.00 0.00 0.98
7510 7778 7.148239 GCCAGTTTGCTAGTAGTGAATTGTATT 60.148 37.037 0.00 0.00 0.00 1.89
7511 7779 6.316390 GCCAGTTTGCTAGTAGTGAATTGTAT 59.684 38.462 0.00 0.00 0.00 2.29
7512 7780 5.642063 GCCAGTTTGCTAGTAGTGAATTGTA 59.358 40.000 0.00 0.00 0.00 2.41
7513 7781 4.455877 GCCAGTTTGCTAGTAGTGAATTGT 59.544 41.667 0.00 0.00 0.00 2.71
7514 7782 4.455533 TGCCAGTTTGCTAGTAGTGAATTG 59.544 41.667 0.00 1.98 0.00 2.32
7515 7783 4.651778 TGCCAGTTTGCTAGTAGTGAATT 58.348 39.130 0.00 0.00 0.00 2.17
7516 7784 4.286297 TGCCAGTTTGCTAGTAGTGAAT 57.714 40.909 0.00 0.00 0.00 2.57
7517 7785 3.762407 TGCCAGTTTGCTAGTAGTGAA 57.238 42.857 0.00 0.00 0.00 3.18
7518 7786 3.557054 CCTTGCCAGTTTGCTAGTAGTGA 60.557 47.826 0.00 0.00 33.10 3.41
7519 7787 2.744202 CCTTGCCAGTTTGCTAGTAGTG 59.256 50.000 0.00 0.00 33.10 2.74
7520 7788 2.876079 GCCTTGCCAGTTTGCTAGTAGT 60.876 50.000 0.00 0.00 33.10 2.73
7521 7789 1.740025 GCCTTGCCAGTTTGCTAGTAG 59.260 52.381 0.00 0.00 33.10 2.57
7522 7790 1.073125 TGCCTTGCCAGTTTGCTAGTA 59.927 47.619 0.00 0.00 33.10 1.82
7523 7791 0.178992 TGCCTTGCCAGTTTGCTAGT 60.179 50.000 0.00 0.00 33.10 2.57
7524 7792 0.242017 GTGCCTTGCCAGTTTGCTAG 59.758 55.000 0.00 0.00 34.48 3.42
7525 7793 0.178992 AGTGCCTTGCCAGTTTGCTA 60.179 50.000 0.00 0.00 0.00 3.49
7526 7794 0.178992 TAGTGCCTTGCCAGTTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
7527 7795 0.242017 CTAGTGCCTTGCCAGTTTGC 59.758 55.000 0.00 0.00 0.00 3.68
7528 7796 1.609208 ACTAGTGCCTTGCCAGTTTG 58.391 50.000 0.00 0.00 0.00 2.93
7529 7797 2.637872 TCTACTAGTGCCTTGCCAGTTT 59.362 45.455 5.39 0.00 0.00 2.66
7530 7798 2.257207 TCTACTAGTGCCTTGCCAGTT 58.743 47.619 5.39 0.00 0.00 3.16
7531 7799 1.938585 TCTACTAGTGCCTTGCCAGT 58.061 50.000 5.39 0.00 0.00 4.00
7532 7800 3.201290 CAATCTACTAGTGCCTTGCCAG 58.799 50.000 5.39 0.00 0.00 4.85
7533 7801 2.680805 GCAATCTACTAGTGCCTTGCCA 60.681 50.000 19.38 0.00 43.37 4.92
7534 7802 1.943340 GCAATCTACTAGTGCCTTGCC 59.057 52.381 19.38 8.30 43.37 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.