Multiple sequence alignment - TraesCS3D01G298700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G298700 chr3D 100.000 3923 0 0 1 3923 412828782 412824860 0.000000e+00 7245.0
1 TraesCS3D01G298700 chr3D 100.000 1508 0 0 4253 5760 412824530 412823023 0.000000e+00 2785.0
2 TraesCS3D01G298700 chr3D 86.667 330 20 6 4880 5202 607934609 607934297 1.540000e-90 344.0
3 TraesCS3D01G298700 chr3A 94.574 2912 114 19 968 3850 537498244 537501140 0.000000e+00 4462.0
4 TraesCS3D01G298700 chr3A 95.032 926 37 5 1 925 537497320 537498237 0.000000e+00 1447.0
5 TraesCS3D01G298700 chr3A 94.839 620 26 4 4258 4871 537501462 537502081 0.000000e+00 963.0
6 TraesCS3D01G298700 chr3A 97.297 37 1 0 3878 3914 537501139 537501175 4.820000e-06 63.9
7 TraesCS3D01G298700 chr3B 91.354 1758 117 21 988 2731 539598756 539597020 0.000000e+00 2372.0
8 TraesCS3D01G298700 chr3B 92.365 799 46 6 1 793 539661326 539660537 0.000000e+00 1123.0
9 TraesCS3D01G298700 chr3B 87.358 965 91 17 2791 3735 539597002 539596049 0.000000e+00 1077.0
10 TraesCS3D01G298700 chr3B 91.052 637 42 9 4253 4877 539595719 539595086 0.000000e+00 846.0
11 TraesCS3D01G298700 chr3B 89.163 203 20 2 2942 3144 71883399 71883599 9.580000e-63 252.0
12 TraesCS3D01G298700 chr3B 89.163 203 20 2 2942 3144 328604432 328604632 9.580000e-63 252.0
13 TraesCS3D01G298700 chr3B 86.667 150 15 3 3775 3923 539595889 539595744 1.660000e-35 161.0
14 TraesCS3D01G298700 chr7B 85.053 843 86 19 4937 5747 596985043 596985877 0.000000e+00 822.0
15 TraesCS3D01G298700 chr7B 85.949 790 64 26 4937 5697 458855959 458856730 0.000000e+00 800.0
16 TraesCS3D01G298700 chr7B 88.670 203 21 2 2942 3144 394824064 394823864 4.460000e-61 246.0
17 TraesCS3D01G298700 chr7D 91.193 545 33 6 5216 5747 33740698 33740156 0.000000e+00 726.0
18 TraesCS3D01G298700 chr7D 89.304 589 42 4 5186 5754 587076373 587076960 0.000000e+00 719.0
19 TraesCS3D01G298700 chr7D 90.288 556 31 8 5216 5749 458159796 458159242 0.000000e+00 706.0
20 TraesCS3D01G298700 chr5D 89.391 575 38 9 5186 5747 233816307 233816871 0.000000e+00 702.0
21 TraesCS3D01G298700 chr5D 89.009 555 36 6 5216 5747 524594541 524593989 0.000000e+00 664.0
22 TraesCS3D01G298700 chr5D 85.714 546 56 8 5216 5747 255562456 255561919 1.810000e-154 556.0
23 TraesCS3D01G298700 chr5D 90.448 335 17 4 4880 5202 267622794 267622463 1.480000e-115 427.0
24 TraesCS3D01G298700 chr5D 89.355 310 13 2 4899 5202 528691576 528691281 7.050000e-99 372.0
25 TraesCS3D01G298700 chr5D 84.821 336 31 8 4880 5200 267815119 267815449 2.590000e-83 320.0
26 TraesCS3D01G298700 chr5D 86.286 175 6 1 5216 5372 498767524 498767350 2.130000e-39 174.0
27 TraesCS3D01G298700 chr1D 88.788 553 39 6 5216 5747 411729468 411728918 0.000000e+00 656.0
28 TraesCS3D01G298700 chr4D 88.571 560 37 10 5216 5751 386123519 386122963 0.000000e+00 654.0
29 TraesCS3D01G298700 chr6D 88.510 557 40 8 5216 5749 473051372 473050817 0.000000e+00 652.0
30 TraesCS3D01G298700 chr6D 86.644 584 57 10 5186 5749 108455160 108455742 1.360000e-175 627.0
31 TraesCS3D01G298700 chr6D 88.532 218 21 2 3536 3749 225837086 225836869 1.590000e-65 261.0
32 TraesCS3D01G298700 chr6D 88.128 219 22 1 3283 3497 225837305 225837087 2.060000e-64 257.0
33 TraesCS3D01G298700 chr6D 89.163 203 17 4 2942 3144 374767726 374767529 1.240000e-61 248.0
34 TraesCS3D01G298700 chr6A 86.621 583 50 8 5186 5747 515656849 515657424 2.280000e-173 619.0
35 TraesCS3D01G298700 chr6A 84.726 347 15 4 4880 5202 22070348 22070016 4.330000e-81 313.0
36 TraesCS3D01G298700 chr6A 87.970 266 16 4 4937 5201 515654931 515655181 3.370000e-77 300.0
37 TraesCS3D01G298700 chr1A 86.856 563 58 8 2947 3497 77161627 77162185 2.950000e-172 616.0
38 TraesCS3D01G298700 chr1A 83.891 329 16 12 4880 5202 582751623 582751920 4.390000e-71 279.0
39 TraesCS3D01G298700 chr6B 86.679 563 59 8 2947 3497 80463111 80462553 1.370000e-170 610.0
40 TraesCS3D01G298700 chr7A 87.342 553 42 11 5216 5749 465794916 465794373 4.940000e-170 608.0
41 TraesCS3D01G298700 chr7A 91.343 335 17 2 4880 5202 465796966 465796632 1.140000e-121 448.0
42 TraesCS3D01G298700 chr7A 89.908 218 18 2 3536 3749 680720630 680720847 1.580000e-70 278.0
43 TraesCS3D01G298700 chr7A 89.163 203 20 2 2942 3144 679416397 679416597 9.580000e-63 252.0
44 TraesCS3D01G298700 chr7A 82.738 168 18 7 5040 5204 366589443 366589602 7.780000e-29 139.0
45 TraesCS3D01G298700 chr2A 86.506 541 57 8 2947 3475 23546625 23546089 1.080000e-161 580.0
46 TraesCS3D01G298700 chr2A 88.670 203 21 2 2942 3144 74111706 74111906 4.460000e-61 246.0
47 TraesCS3D01G298700 chr5B 88.955 335 24 3 4880 5202 560388051 560388384 8.990000e-108 401.0
48 TraesCS3D01G298700 chr4A 87.538 329 20 5 4880 5202 446083159 446083472 1.530000e-95 361.0
49 TraesCS3D01G298700 chr2D 84.348 345 14 13 4879 5200 42728704 42729031 9.380000e-78 302.0
50 TraesCS3D01G298700 chr2B 90.090 222 15 5 4937 5155 144027013 144027230 1.220000e-71 281.0
51 TraesCS3D01G298700 chr2B 89.163 203 20 2 2942 3144 118095643 118095443 9.580000e-63 252.0
52 TraesCS3D01G298700 chr2B 80.236 339 35 13 4880 5202 753693181 753692859 5.810000e-55 226.0
53 TraesCS3D01G298700 chrUn 86.878 221 11 5 4995 5213 131947528 131947324 1.250000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G298700 chr3D 412823023 412828782 5759 True 5015.000 7245 100.00000 1 5760 2 chr3D.!!$R2 5759
1 TraesCS3D01G298700 chr3A 537497320 537502081 4761 False 1733.975 4462 95.43550 1 4871 4 chr3A.!!$F1 4870
2 TraesCS3D01G298700 chr3B 539660537 539661326 789 True 1123.000 1123 92.36500 1 793 1 chr3B.!!$R1 792
3 TraesCS3D01G298700 chr3B 539595086 539598756 3670 True 1114.000 2372 89.10775 988 4877 4 chr3B.!!$R2 3889
4 TraesCS3D01G298700 chr7B 596985043 596985877 834 False 822.000 822 85.05300 4937 5747 1 chr7B.!!$F2 810
5 TraesCS3D01G298700 chr7B 458855959 458856730 771 False 800.000 800 85.94900 4937 5697 1 chr7B.!!$F1 760
6 TraesCS3D01G298700 chr7D 33740156 33740698 542 True 726.000 726 91.19300 5216 5747 1 chr7D.!!$R1 531
7 TraesCS3D01G298700 chr7D 587076373 587076960 587 False 719.000 719 89.30400 5186 5754 1 chr7D.!!$F1 568
8 TraesCS3D01G298700 chr7D 458159242 458159796 554 True 706.000 706 90.28800 5216 5749 1 chr7D.!!$R2 533
9 TraesCS3D01G298700 chr5D 233816307 233816871 564 False 702.000 702 89.39100 5186 5747 1 chr5D.!!$F1 561
10 TraesCS3D01G298700 chr5D 524593989 524594541 552 True 664.000 664 89.00900 5216 5747 1 chr5D.!!$R4 531
11 TraesCS3D01G298700 chr5D 255561919 255562456 537 True 556.000 556 85.71400 5216 5747 1 chr5D.!!$R1 531
12 TraesCS3D01G298700 chr1D 411728918 411729468 550 True 656.000 656 88.78800 5216 5747 1 chr1D.!!$R1 531
13 TraesCS3D01G298700 chr4D 386122963 386123519 556 True 654.000 654 88.57100 5216 5751 1 chr4D.!!$R1 535
14 TraesCS3D01G298700 chr6D 473050817 473051372 555 True 652.000 652 88.51000 5216 5749 1 chr6D.!!$R2 533
15 TraesCS3D01G298700 chr6D 108455160 108455742 582 False 627.000 627 86.64400 5186 5749 1 chr6D.!!$F1 563
16 TraesCS3D01G298700 chr6A 515654931 515657424 2493 False 459.500 619 87.29550 4937 5747 2 chr6A.!!$F1 810
17 TraesCS3D01G298700 chr1A 77161627 77162185 558 False 616.000 616 86.85600 2947 3497 1 chr1A.!!$F1 550
18 TraesCS3D01G298700 chr6B 80462553 80463111 558 True 610.000 610 86.67900 2947 3497 1 chr6B.!!$R1 550
19 TraesCS3D01G298700 chr7A 465794373 465796966 2593 True 528.000 608 89.34250 4880 5749 2 chr7A.!!$R1 869
20 TraesCS3D01G298700 chr2A 23546089 23546625 536 True 580.000 580 86.50600 2947 3475 1 chr2A.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 942 0.179111 TGTTGGATCCGAGATCGCAC 60.179 55.0 7.39 7.19 38.18 5.34 F
1071 1090 0.106719 AAGCGGAGAGAGAGAGAGGG 60.107 60.0 0.00 0.00 0.00 4.30 F
1843 1864 0.467290 ACACCGTGGCTGGAATTTGT 60.467 50.0 3.03 0.00 0.00 2.83 F
3601 3643 0.962489 CAGTCTTCCTGTCGTCTGGT 59.038 55.0 5.57 0.00 36.37 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1836 1.674322 GCCACGGTGTAGCCACAAT 60.674 57.895 7.45 0.00 43.71 2.71 R
2313 2334 2.504367 TCCTTTTGTGCTAGGCTCAAC 58.496 47.619 6.53 0.00 40.81 3.18 R
3605 3647 0.245539 AATGAATGCCAGCAGTGTGC 59.754 50.000 0.00 0.00 45.46 4.57 R
4877 5052 0.024619 CTAGTTTTTAGCGCGCGGTC 59.975 55.000 39.46 23.36 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.659440 ACAACCACTTGTGAAATCAAAGT 57.341 34.783 1.89 5.65 39.28 2.66
90 91 6.263168 CACTTGTGAAATCAAAGTAAGGTCCT 59.737 38.462 0.00 0.00 0.00 3.85
144 145 0.331278 TGAAATCCGGACTGGCCATT 59.669 50.000 6.12 0.00 37.80 3.16
241 242 2.290323 CCCCTTCAGGAGACACGAAAAT 60.290 50.000 0.00 0.00 38.24 1.82
272 273 1.116308 AACAACCCAAAACTTCCCCG 58.884 50.000 0.00 0.00 0.00 5.73
279 280 3.074242 ACCCAAAACTTCCCCGTGTAATA 59.926 43.478 0.00 0.00 0.00 0.98
349 350 0.459411 GGAGGACGAAGAGAGCAAGC 60.459 60.000 0.00 0.00 0.00 4.01
353 354 2.510238 CGAAGAGAGCAAGCCCGG 60.510 66.667 0.00 0.00 0.00 5.73
474 475 4.379243 CTCACCGGCAGGAGCGTT 62.379 66.667 10.86 0.00 43.41 4.84
507 514 3.699894 CTGCGCCAGAGGGAGTGT 61.700 66.667 4.18 0.00 36.19 3.55
651 658 4.711949 AACTGCGGCAGCCTCCTG 62.712 66.667 28.80 5.73 44.33 3.86
686 693 4.966787 TTCCACCAAGGCACGGGC 62.967 66.667 0.00 0.00 37.29 6.13
763 770 0.808755 CGGTTTTGATTCCCTTCCGG 59.191 55.000 0.00 0.00 34.05 5.14
809 816 1.880675 ACCGACCTGCAGTCTATATCG 59.119 52.381 13.81 11.07 43.91 2.92
833 840 0.893270 CTGGAACAAATGGGCCGTGA 60.893 55.000 0.00 0.00 38.70 4.35
836 843 1.463674 GAACAAATGGGCCGTGAGAT 58.536 50.000 0.00 0.00 0.00 2.75
844 851 1.172812 GGGCCGTGAGATTATTGGGC 61.173 60.000 0.00 0.00 43.94 5.36
862 869 1.000896 CCCATGTTTTCCGGAGCCT 60.001 57.895 3.34 0.00 0.00 4.58
927 935 2.649331 ACGTAGTTGTTGGATCCGAG 57.351 50.000 7.39 0.00 37.78 4.63
929 937 2.758979 ACGTAGTTGTTGGATCCGAGAT 59.241 45.455 7.39 0.00 37.78 2.75
930 938 3.181489 ACGTAGTTGTTGGATCCGAGATC 60.181 47.826 7.39 3.06 37.78 2.75
931 939 2.586258 AGTTGTTGGATCCGAGATCG 57.414 50.000 7.39 0.00 39.44 3.69
932 940 0.931005 GTTGTTGGATCCGAGATCGC 59.069 55.000 7.39 0.00 38.18 4.58
933 941 0.534873 TTGTTGGATCCGAGATCGCA 59.465 50.000 7.39 0.00 38.18 5.10
934 942 0.179111 TGTTGGATCCGAGATCGCAC 60.179 55.000 7.39 7.19 38.18 5.34
935 943 0.876342 GTTGGATCCGAGATCGCACC 60.876 60.000 7.39 0.81 38.18 5.01
936 944 2.049985 GGATCCGAGATCGCACCG 60.050 66.667 0.00 0.00 38.18 4.94
937 945 2.722487 GATCCGAGATCGCACCGT 59.278 61.111 0.00 0.00 38.18 4.83
939 947 0.522180 GATCCGAGATCGCACCGTAT 59.478 55.000 0.00 0.00 38.18 3.06
941 949 1.099295 TCCGAGATCGCACCGTATGT 61.099 55.000 0.00 0.00 38.18 2.29
951 959 3.959478 ACCGTATGTGACATAGCCG 57.041 52.632 5.37 7.05 0.00 5.52
952 960 0.387929 ACCGTATGTGACATAGCCGG 59.612 55.000 24.39 24.39 39.75 6.13
953 961 0.387929 CCGTATGTGACATAGCCGGT 59.612 55.000 20.26 0.00 0.00 5.28
954 962 1.487482 CGTATGTGACATAGCCGGTG 58.513 55.000 5.37 0.00 0.00 4.94
955 963 1.865865 GTATGTGACATAGCCGGTGG 58.134 55.000 5.37 0.00 0.00 4.61
972 980 2.203015 GCGCCGAAGCCCATTAGA 60.203 61.111 0.00 0.00 34.57 2.10
973 981 2.534903 GCGCCGAAGCCCATTAGAC 61.535 63.158 0.00 0.00 34.57 2.59
974 982 1.153449 CGCCGAAGCCCATTAGACA 60.153 57.895 0.00 0.00 34.57 3.41
1070 1089 1.308998 GAAGCGGAGAGAGAGAGAGG 58.691 60.000 0.00 0.00 0.00 3.69
1071 1090 0.106719 AAGCGGAGAGAGAGAGAGGG 60.107 60.000 0.00 0.00 0.00 4.30
1072 1091 1.528309 GCGGAGAGAGAGAGAGGGG 60.528 68.421 0.00 0.00 0.00 4.79
1073 1092 1.528309 CGGAGAGAGAGAGAGGGGC 60.528 68.421 0.00 0.00 0.00 5.80
1074 1093 1.618030 GGAGAGAGAGAGAGGGGCA 59.382 63.158 0.00 0.00 0.00 5.36
1075 1094 0.468029 GGAGAGAGAGAGAGGGGCAG 60.468 65.000 0.00 0.00 0.00 4.85
1076 1095 0.550914 GAGAGAGAGAGAGGGGCAGA 59.449 60.000 0.00 0.00 0.00 4.26
1077 1096 0.552848 AGAGAGAGAGAGGGGCAGAG 59.447 60.000 0.00 0.00 0.00 3.35
1383 1404 5.900339 TCATTCATTATTAGGTCGTTCGC 57.100 39.130 0.00 0.00 0.00 4.70
1401 1422 0.796927 GCTTACTTGTGTTCCTCGGC 59.203 55.000 0.00 0.00 0.00 5.54
1403 1424 1.002087 CTTACTTGTGTTCCTCGGCCT 59.998 52.381 0.00 0.00 0.00 5.19
1482 1503 3.588955 CAAAATGGTAGCTTTCTTGCCC 58.411 45.455 0.00 0.00 0.00 5.36
1550 1571 5.263599 TGTGATGGATGCTTATGGTTTTCT 58.736 37.500 0.00 0.00 0.00 2.52
1582 1603 1.608590 GCAGCCAGAAGTGCAGTAAAA 59.391 47.619 0.00 0.00 39.62 1.52
1617 1638 1.795768 CATACCACAACGTCTGCACT 58.204 50.000 0.00 0.00 0.00 4.40
1625 1646 2.224185 ACAACGTCTGCACTGGTGAATA 60.224 45.455 4.79 0.00 0.00 1.75
1632 1653 1.760029 TGCACTGGTGAATATCGGCTA 59.240 47.619 4.79 0.00 0.00 3.93
1634 1655 2.755650 CACTGGTGAATATCGGCTACC 58.244 52.381 0.00 0.00 0.00 3.18
1657 1678 2.159338 GGCGATGTCTCTTGTTACGGTA 60.159 50.000 0.00 0.00 0.00 4.02
1789 1810 1.335132 TGGAAGGTGATCCCCGCTAC 61.335 60.000 0.00 0.00 38.82 3.58
1798 1819 3.065371 GTGATCCCCGCTACTTCATTTTG 59.935 47.826 0.00 0.00 0.00 2.44
1814 1835 8.833493 ACTTCATTTTGTTGTTACACTAGTACC 58.167 33.333 0.00 0.00 32.98 3.34
1815 1836 8.734218 TTCATTTTGTTGTTACACTAGTACCA 57.266 30.769 0.00 0.00 32.98 3.25
1816 1837 8.911918 TCATTTTGTTGTTACACTAGTACCAT 57.088 30.769 0.00 0.00 32.98 3.55
1820 1841 7.485418 TTGTTGTTACACTAGTACCATTGTG 57.515 36.000 0.00 0.00 32.98 3.33
1843 1864 0.467290 ACACCGTGGCTGGAATTTGT 60.467 50.000 3.03 0.00 0.00 2.83
1980 2001 5.163141 TGGAAGAGGATTGTTGTGAACCTTA 60.163 40.000 0.00 0.00 0.00 2.69
2007 2028 2.126467 CCATTTGTTTTGTGCTGACCG 58.874 47.619 0.00 0.00 0.00 4.79
2282 2303 4.597507 ACAGACTTTCCTTAATCCACCTCA 59.402 41.667 0.00 0.00 0.00 3.86
2290 2311 4.401519 TCCTTAATCCACCTCACGAACTAG 59.598 45.833 0.00 0.00 0.00 2.57
2313 2334 3.659183 AGAAGGTTCCATCCCTCAATG 57.341 47.619 0.00 0.00 0.00 2.82
2429 2450 5.121611 TGGATGAGCGTGTTTAACATAACTG 59.878 40.000 0.00 0.00 0.00 3.16
2650 2675 6.014327 ACCCTATTGCACAGAAATCAAAACAT 60.014 34.615 0.00 0.00 0.00 2.71
2653 2678 7.489113 CCTATTGCACAGAAATCAAAACATACC 59.511 37.037 0.00 0.00 0.00 2.73
2763 2788 7.234166 CCCTTCTATATCTTTTTGGGATGCATT 59.766 37.037 0.00 0.00 35.64 3.56
2789 2814 7.125053 TGTGATATTGGTCAGGTGACATTAGTA 59.875 37.037 12.09 0.56 46.47 1.82
2831 2856 2.004733 GTGCCTGGTCGTGGTATTTAC 58.995 52.381 0.00 0.00 0.00 2.01
2978 3003 6.601332 TGGACTATTCAAGTTCCAACTCTTT 58.399 36.000 0.00 0.00 39.07 2.52
3009 3034 9.593134 AGATATCTTCATATTTAATCTGTCGGC 57.407 33.333 0.00 0.00 0.00 5.54
3071 3096 5.480073 TGTGCAAATGGAAATAGTTAGGCTT 59.520 36.000 0.00 0.00 0.00 4.35
3166 3191 3.963665 TCAAACTCCAGCAAAATTCACG 58.036 40.909 0.00 0.00 0.00 4.35
3219 3244 3.130633 TCATGTGTTTCTGTTCGGTCAG 58.869 45.455 0.00 2.25 36.85 3.51
3547 3589 8.727910 GTTTTAAACCTCACGAAATCCTCTATT 58.272 33.333 0.00 0.00 0.00 1.73
3594 3636 7.446001 AAATTCAATCTTCAGTCTTCCTGTC 57.554 36.000 0.00 0.00 42.19 3.51
3601 3643 0.962489 CAGTCTTCCTGTCGTCTGGT 59.038 55.000 5.57 0.00 36.37 4.00
3605 3647 2.544267 GTCTTCCTGTCGTCTGGTTTTG 59.456 50.000 5.57 0.00 34.80 2.44
3607 3649 0.179234 TCCTGTCGTCTGGTTTTGCA 59.821 50.000 5.57 0.00 34.80 4.08
3608 3650 0.307760 CCTGTCGTCTGGTTTTGCAC 59.692 55.000 0.00 0.00 0.00 4.57
3609 3651 1.013596 CTGTCGTCTGGTTTTGCACA 58.986 50.000 0.00 0.00 0.00 4.57
3610 3652 0.730265 TGTCGTCTGGTTTTGCACAC 59.270 50.000 0.00 0.00 0.00 3.82
3611 3653 1.014352 GTCGTCTGGTTTTGCACACT 58.986 50.000 0.00 0.00 0.00 3.55
3612 3654 1.013596 TCGTCTGGTTTTGCACACTG 58.986 50.000 0.00 0.00 0.00 3.66
3613 3655 0.592247 CGTCTGGTTTTGCACACTGC 60.592 55.000 0.00 0.00 45.29 4.40
3614 3656 0.740737 GTCTGGTTTTGCACACTGCT 59.259 50.000 0.00 0.00 45.31 4.24
3615 3657 0.740149 TCTGGTTTTGCACACTGCTG 59.260 50.000 0.00 0.00 45.31 4.41
3620 3662 0.464870 TTTTGCACACTGCTGGCATT 59.535 45.000 0.00 0.00 45.31 3.56
3625 3670 1.734707 GCACACTGCTGGCATTCATTC 60.735 52.381 0.00 0.00 40.96 2.67
3685 3730 5.029650 TCTTGATTGTACGTCAACATTGC 57.970 39.130 8.85 0.00 38.97 3.56
3732 3777 2.089201 GTCCATTTGGGTAAGGTTCCG 58.911 52.381 0.00 0.00 38.11 4.30
3815 3980 6.649141 TGTACGTCTATCTGCTGTTGAAAATT 59.351 34.615 0.00 0.00 0.00 1.82
3820 3985 7.571983 CGTCTATCTGCTGTTGAAAATTGAACT 60.572 37.037 0.00 0.00 0.00 3.01
3861 4026 1.771255 GTGGATTCTCCTAGCATGGGT 59.229 52.381 0.00 0.00 38.29 4.51
3862 4027 2.050144 TGGATTCTCCTAGCATGGGTC 58.950 52.381 0.00 0.00 38.29 4.46
3863 4028 2.334023 GGATTCTCCTAGCATGGGTCT 58.666 52.381 0.00 0.00 38.29 3.85
3881 4046 3.696548 GGTCTTCTTCTATTTGCCCTTGG 59.303 47.826 0.00 0.00 0.00 3.61
4370 4535 0.249911 AACTCCGGTTCAGTGTGCTC 60.250 55.000 0.00 0.00 0.00 4.26
4544 4715 1.547372 CTTTTCCCTGTTGCATCCCTG 59.453 52.381 0.00 0.00 0.00 4.45
4677 4848 0.880278 TGTGCACAGACGCTCTTTCC 60.880 55.000 17.42 0.00 0.00 3.13
4678 4849 0.880278 GTGCACAGACGCTCTTTCCA 60.880 55.000 13.17 0.00 0.00 3.53
4686 4857 0.250338 ACGCTCTTTCCAGGTGTTCC 60.250 55.000 0.00 0.00 0.00 3.62
4705 4876 1.611673 CCAACTCACCGGAGAAATGCT 60.612 52.381 9.46 0.00 44.26 3.79
4706 4877 1.466167 CAACTCACCGGAGAAATGCTG 59.534 52.381 9.46 0.00 44.26 4.41
4719 4890 6.961554 CGGAGAAATGCTGATACTTGTTTTAC 59.038 38.462 0.00 0.00 0.00 2.01
4724 4895 7.944729 AATGCTGATACTTGTTTTACCAGAT 57.055 32.000 0.00 0.00 0.00 2.90
4877 5052 3.437049 GCTGCTGGTTTACCTCTTGTTAG 59.563 47.826 0.00 0.00 36.82 2.34
4878 5053 4.802918 GCTGCTGGTTTACCTCTTGTTAGA 60.803 45.833 0.00 0.00 36.82 2.10
4879 5054 4.638304 TGCTGGTTTACCTCTTGTTAGAC 58.362 43.478 0.00 0.00 36.82 2.59
4880 5055 4.001652 GCTGGTTTACCTCTTGTTAGACC 58.998 47.826 0.00 0.00 36.82 3.85
4881 5056 4.243270 CTGGTTTACCTCTTGTTAGACCG 58.757 47.826 0.00 0.00 36.82 4.79
4882 5057 2.998670 GGTTTACCTCTTGTTAGACCGC 59.001 50.000 0.00 0.00 0.00 5.68
4883 5058 2.642139 TTACCTCTTGTTAGACCGCG 57.358 50.000 0.00 0.00 0.00 6.46
4884 5059 0.171903 TACCTCTTGTTAGACCGCGC 59.828 55.000 0.00 0.00 0.00 6.86
4885 5060 2.158959 CCTCTTGTTAGACCGCGCG 61.159 63.158 25.67 25.67 0.00 6.86
4899 5074 1.136169 CCGCGCGCTAAAAACTAGTTT 60.136 47.619 30.48 15.22 0.00 2.66
4906 5081 2.239201 CTAAAAACTAGTTTGCCGCGC 58.761 47.619 21.22 0.00 32.36 6.86
4961 5142 0.958091 ACAGCCACGCTAAAATGCAA 59.042 45.000 0.00 0.00 36.40 4.08
5003 5184 4.998672 GCATTGCATATATGGCATTTTGGT 59.001 37.500 14.51 0.00 41.58 3.67
5189 7083 2.103373 CAATCCTCCTCCTCGTCTTCA 58.897 52.381 0.00 0.00 0.00 3.02
5195 7089 1.285078 TCCTCCTCGTCTTCATCCTCA 59.715 52.381 0.00 0.00 0.00 3.86
5198 7092 3.221771 CTCCTCGTCTTCATCCTCATCT 58.778 50.000 0.00 0.00 0.00 2.90
5199 7093 3.636300 CTCCTCGTCTTCATCCTCATCTT 59.364 47.826 0.00 0.00 0.00 2.40
5201 7095 3.549827 CCTCGTCTTCATCCTCATCTTCG 60.550 52.174 0.00 0.00 0.00 3.79
5206 7100 3.885901 TCTTCATCCTCATCTTCGTCGAT 59.114 43.478 0.00 0.00 0.00 3.59
5209 7103 3.381590 TCATCCTCATCTTCGTCGATGTT 59.618 43.478 4.21 0.00 41.17 2.71
5212 7106 2.099921 CCTCATCTTCGTCGATGTTCCT 59.900 50.000 4.21 0.00 41.17 3.36
5213 7107 3.429547 CCTCATCTTCGTCGATGTTCCTT 60.430 47.826 4.21 0.00 41.17 3.36
5214 7108 4.177026 CTCATCTTCGTCGATGTTCCTTT 58.823 43.478 4.21 0.00 41.17 3.11
5221 7115 0.320374 TCGATGTTCCTTTGCCGTCT 59.680 50.000 0.00 0.00 0.00 4.18
5263 7157 0.393537 ATGCCTTGCCCTTCTTCGAG 60.394 55.000 0.00 0.00 0.00 4.04
5495 7447 2.034066 CCATGGGGTGCAGTTCGT 59.966 61.111 2.85 0.00 0.00 3.85
5639 7593 0.462789 CCCAACTCCTTATACCGCGT 59.537 55.000 4.92 0.00 0.00 6.01
5640 7594 1.682854 CCCAACTCCTTATACCGCGTA 59.317 52.381 4.92 0.00 0.00 4.42
5710 7664 4.021016 TGCTAAAATGGCCAAATTTACGGT 60.021 37.500 10.96 0.00 0.00 4.83
5754 7708 1.557099 TGGAGATGCTCTTACACCGT 58.443 50.000 0.00 0.00 0.00 4.83
5755 7709 1.476891 TGGAGATGCTCTTACACCGTC 59.523 52.381 0.00 0.00 0.00 4.79
5756 7710 1.751924 GGAGATGCTCTTACACCGTCT 59.248 52.381 0.00 0.00 0.00 4.18
5757 7711 2.480416 GGAGATGCTCTTACACCGTCTG 60.480 54.545 0.00 0.00 0.00 3.51
5758 7712 1.478510 AGATGCTCTTACACCGTCTGG 59.521 52.381 0.00 0.00 42.84 3.86
5759 7713 1.476891 GATGCTCTTACACCGTCTGGA 59.523 52.381 0.00 0.00 39.21 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 7.610305 GGTTAGTGATCAATCAAAAGGACCTTA 59.390 37.037 7.30 0.00 38.75 2.69
90 91 7.737972 TTTCTCGGTTAGTGATCAATCAAAA 57.262 32.000 0.00 0.00 38.75 2.44
157 158 3.118454 CGCGAATGTGGCCGTCTT 61.118 61.111 0.00 0.00 0.00 3.01
241 242 4.826274 TTGGGTTGTTTGGTCATTTTGA 57.174 36.364 0.00 0.00 0.00 2.69
272 273 4.328169 GCTGGTGGTACGACTTTATTACAC 59.672 45.833 7.99 0.00 0.00 2.90
279 280 0.470766 TTGGCTGGTGGTACGACTTT 59.529 50.000 7.99 0.00 0.00 2.66
785 792 3.311110 GACTGCAGGTCGGTCCCA 61.311 66.667 19.93 0.00 43.70 4.37
792 799 2.554462 TCAGCGATATAGACTGCAGGTC 59.446 50.000 19.93 12.94 44.80 3.85
809 816 0.244721 GCCCATTTGTTCCAGTCAGC 59.755 55.000 0.00 0.00 0.00 4.26
833 840 3.711190 GGAAAACATGGGCCCAATAATCT 59.289 43.478 32.58 8.38 0.00 2.40
836 843 1.827969 CGGAAAACATGGGCCCAATAA 59.172 47.619 32.58 4.86 0.00 1.40
844 851 0.254747 TAGGCTCCGGAAAACATGGG 59.745 55.000 5.23 0.00 0.00 4.00
895 903 3.259876 ACAACTACGTCTAATGGGCTTCA 59.740 43.478 0.00 0.00 0.00 3.02
898 906 3.596214 CAACAACTACGTCTAATGGGCT 58.404 45.455 0.00 0.00 0.00 5.19
933 941 0.387929 CCGGCTATGTCACATACGGT 59.612 55.000 15.58 0.00 35.47 4.83
934 942 0.387929 ACCGGCTATGTCACATACGG 59.612 55.000 20.15 20.15 44.86 4.02
935 943 1.487482 CACCGGCTATGTCACATACG 58.513 55.000 0.00 0.00 0.00 3.06
936 944 1.865865 CCACCGGCTATGTCACATAC 58.134 55.000 0.00 0.00 0.00 2.39
937 945 0.105964 GCCACCGGCTATGTCACATA 59.894 55.000 0.00 0.00 46.69 2.29
939 947 2.267642 GCCACCGGCTATGTCACA 59.732 61.111 0.00 0.00 46.69 3.58
956 964 0.532862 ATGTCTAATGGGCTTCGGCG 60.533 55.000 0.00 0.00 42.91 6.46
957 965 2.417719 CTATGTCTAATGGGCTTCGGC 58.582 52.381 0.00 0.00 40.88 5.54
958 966 2.417719 GCTATGTCTAATGGGCTTCGG 58.582 52.381 0.00 0.00 0.00 4.30
959 967 2.224281 TGGCTATGTCTAATGGGCTTCG 60.224 50.000 0.00 0.00 0.00 3.79
960 968 3.142174 GTGGCTATGTCTAATGGGCTTC 58.858 50.000 0.00 0.00 0.00 3.86
961 969 2.509548 TGTGGCTATGTCTAATGGGCTT 59.490 45.455 0.00 0.00 0.00 4.35
962 970 2.105477 CTGTGGCTATGTCTAATGGGCT 59.895 50.000 0.00 0.00 0.00 5.19
963 971 2.498167 CTGTGGCTATGTCTAATGGGC 58.502 52.381 0.00 0.00 0.00 5.36
964 972 2.224621 CCCTGTGGCTATGTCTAATGGG 60.225 54.545 0.00 0.00 0.00 4.00
965 973 2.705658 TCCCTGTGGCTATGTCTAATGG 59.294 50.000 0.00 0.00 0.00 3.16
966 974 4.630644 ATCCCTGTGGCTATGTCTAATG 57.369 45.455 0.00 0.00 0.00 1.90
967 975 4.220821 CGTATCCCTGTGGCTATGTCTAAT 59.779 45.833 0.00 0.00 0.00 1.73
968 976 3.572682 CGTATCCCTGTGGCTATGTCTAA 59.427 47.826 0.00 0.00 0.00 2.10
969 977 3.154710 CGTATCCCTGTGGCTATGTCTA 58.845 50.000 0.00 0.00 0.00 2.59
970 978 1.964223 CGTATCCCTGTGGCTATGTCT 59.036 52.381 0.00 0.00 0.00 3.41
971 979 1.605712 GCGTATCCCTGTGGCTATGTC 60.606 57.143 0.00 0.00 0.00 3.06
972 980 0.393077 GCGTATCCCTGTGGCTATGT 59.607 55.000 0.00 0.00 0.00 2.29
973 981 0.320771 GGCGTATCCCTGTGGCTATG 60.321 60.000 0.00 0.00 0.00 2.23
974 982 2.058675 GGCGTATCCCTGTGGCTAT 58.941 57.895 0.00 0.00 0.00 2.97
1004 1012 3.502356 CTTACCCCTAAAACCTTTGCCA 58.498 45.455 0.00 0.00 0.00 4.92
1005 1013 2.232941 GCTTACCCCTAAAACCTTTGCC 59.767 50.000 0.00 0.00 0.00 4.52
1008 1016 4.352893 TCTCTGCTTACCCCTAAAACCTTT 59.647 41.667 0.00 0.00 0.00 3.11
1009 1017 3.914435 TCTCTGCTTACCCCTAAAACCTT 59.086 43.478 0.00 0.00 0.00 3.50
1070 1089 0.529555 GCTTCGACATCTCTCTGCCC 60.530 60.000 0.00 0.00 0.00 5.36
1071 1090 0.869454 CGCTTCGACATCTCTCTGCC 60.869 60.000 0.00 0.00 0.00 4.85
1072 1091 0.099613 TCGCTTCGACATCTCTCTGC 59.900 55.000 0.00 0.00 0.00 4.26
1073 1092 1.859597 GCTCGCTTCGACATCTCTCTG 60.860 57.143 0.00 0.00 0.00 3.35
1074 1093 0.380378 GCTCGCTTCGACATCTCTCT 59.620 55.000 0.00 0.00 0.00 3.10
1075 1094 0.380378 AGCTCGCTTCGACATCTCTC 59.620 55.000 0.00 0.00 0.00 3.20
1076 1095 0.100325 CAGCTCGCTTCGACATCTCT 59.900 55.000 0.00 0.00 0.00 3.10
1077 1096 0.869454 CCAGCTCGCTTCGACATCTC 60.869 60.000 0.00 0.00 0.00 2.75
1188 1207 3.802685 ACAAGAACGGAAAAGAGAAGACG 59.197 43.478 0.00 0.00 0.00 4.18
1381 1402 1.068474 CCGAGGAACACAAGTAAGCG 58.932 55.000 0.00 0.00 0.00 4.68
1383 1404 1.002087 AGGCCGAGGAACACAAGTAAG 59.998 52.381 0.00 0.00 0.00 2.34
1401 1422 4.448537 AAGAAGAGACGAACAGATCAGG 57.551 45.455 0.00 0.00 0.00 3.86
1403 1424 4.449068 GCAAAAGAAGAGACGAACAGATCA 59.551 41.667 0.00 0.00 0.00 2.92
1447 1468 3.181452 ACCATTTTGCAGGCTCAACAATT 60.181 39.130 0.00 0.00 0.00 2.32
1482 1503 3.637998 ATACTATGCGGTAACCAGTCG 57.362 47.619 0.00 0.00 0.00 4.18
1582 1603 1.895020 TATGCCTGCCGGACGTTTCT 61.895 55.000 5.05 0.00 0.00 2.52
1617 1638 0.677288 CGGGTAGCCGATATTCACCA 59.323 55.000 29.00 0.00 34.88 4.17
1625 1646 3.991051 CATCGCCGGGTAGCCGAT 61.991 66.667 33.83 17.08 41.85 4.18
1632 1653 1.827399 AACAAGAGACATCGCCGGGT 61.827 55.000 2.18 0.00 0.00 5.28
1634 1655 1.278238 GTAACAAGAGACATCGCCGG 58.722 55.000 0.00 0.00 0.00 6.13
1657 1678 2.124320 AAACGGCACACCAGCACT 60.124 55.556 0.00 0.00 35.83 4.40
1789 1810 8.832521 TGGTACTAGTGTAACAACAAAATGAAG 58.167 33.333 5.39 0.00 42.72 3.02
1814 1835 1.922135 GCCACGGTGTAGCCACAATG 61.922 60.000 7.45 0.00 43.71 2.82
1815 1836 1.674322 GCCACGGTGTAGCCACAAT 60.674 57.895 7.45 0.00 43.71 2.71
1816 1837 2.281208 GCCACGGTGTAGCCACAA 60.281 61.111 7.45 0.00 43.71 3.33
1820 1841 2.536997 ATTCCAGCCACGGTGTAGCC 62.537 60.000 7.45 0.00 0.00 3.93
1866 1887 5.758296 AGACAACACTGAATCGTTACAACAT 59.242 36.000 0.00 0.00 0.00 2.71
1980 2001 6.258507 GTCAGCACAAAACAAATGGATTTCTT 59.741 34.615 0.00 0.00 0.00 2.52
2007 2028 6.321181 TCTGATGGCCTATAAAACAATTCACC 59.679 38.462 3.32 0.00 0.00 4.02
2282 2303 5.302313 GGATGGAACCTTCTATCTAGTTCGT 59.698 44.000 10.25 0.00 42.66 3.85
2290 2311 5.163152 ACATTGAGGGATGGAACCTTCTATC 60.163 44.000 3.40 3.40 42.42 2.08
2313 2334 2.504367 TCCTTTTGTGCTAGGCTCAAC 58.496 47.619 6.53 0.00 40.81 3.18
2515 2537 9.516546 AACGACATACTACAATATAGGAGATGA 57.483 33.333 0.00 0.00 0.00 2.92
2763 2788 4.842531 ATGTCACCTGACCAATATCACA 57.157 40.909 2.98 0.00 44.15 3.58
2789 2814 7.164803 GCACCTATTCCTATTCTAAGAATGCT 58.835 38.462 0.00 0.00 32.64 3.79
2831 2856 7.056800 GTGTGCATTTTCATTTAGTTGAAACG 58.943 34.615 0.00 0.00 43.38 3.60
3071 3096 8.740906 TGTCACAAGTTCCTACAAATGTAAAAA 58.259 29.630 0.00 0.00 0.00 1.94
3166 3191 6.536941 CAGAATGACCCTTAAGAAAGCTACTC 59.463 42.308 3.36 0.00 39.69 2.59
3219 3244 1.334869 GATTGGGATGTCATCGGTTGC 59.665 52.381 6.74 0.00 0.00 4.17
3463 3504 5.982356 TGTCAGCTATGAGCATCTTAAGTT 58.018 37.500 1.63 0.00 45.56 2.66
3594 3636 0.592247 GCAGTGTGCAAAACCAGACG 60.592 55.000 0.00 0.00 44.26 4.18
3605 3647 0.245539 AATGAATGCCAGCAGTGTGC 59.754 50.000 0.00 0.00 45.46 4.57
3607 3649 1.816835 CAGAATGAATGCCAGCAGTGT 59.183 47.619 0.00 0.00 39.69 3.55
3608 3650 1.816835 ACAGAATGAATGCCAGCAGTG 59.183 47.619 0.00 0.00 39.69 3.66
3609 3651 1.816835 CACAGAATGAATGCCAGCAGT 59.183 47.619 0.00 0.00 39.69 4.40
3610 3652 1.816835 ACACAGAATGAATGCCAGCAG 59.183 47.619 0.00 0.00 39.69 4.24
3611 3653 1.913778 ACACAGAATGAATGCCAGCA 58.086 45.000 0.00 0.00 39.69 4.41
3612 3654 4.082571 ACTTTACACAGAATGAATGCCAGC 60.083 41.667 0.00 0.00 39.69 4.85
3613 3655 5.181811 TCACTTTACACAGAATGAATGCCAG 59.818 40.000 0.00 0.00 39.69 4.85
3614 3656 5.048782 GTCACTTTACACAGAATGAATGCCA 60.049 40.000 0.00 0.00 39.69 4.92
3615 3657 5.182001 AGTCACTTTACACAGAATGAATGCC 59.818 40.000 0.00 0.00 39.69 4.40
3620 3662 4.702831 TGCAGTCACTTTACACAGAATGA 58.297 39.130 0.00 0.00 39.69 2.57
3625 3670 5.696270 TCACTTATGCAGTCACTTTACACAG 59.304 40.000 0.00 0.00 30.92 3.66
3685 3730 6.294731 CCAGGAACAAAAAGGTGGATTTAGAG 60.295 42.308 0.00 0.00 0.00 2.43
3732 3777 3.015327 TCCTCCTACTACTTCAGCGAAC 58.985 50.000 0.00 0.00 0.00 3.95
3770 3914 7.652105 ACGTACAACTAATGGTAGAATGCTATG 59.348 37.037 0.00 0.00 0.00 2.23
3782 3947 5.687730 CAGCAGATAGACGTACAACTAATGG 59.312 44.000 0.00 0.00 0.00 3.16
3815 3980 2.256306 TCCATACAGGCACTCAGTTCA 58.744 47.619 0.00 0.00 34.60 3.18
3820 3985 3.774766 ACTGTTATCCATACAGGCACTCA 59.225 43.478 7.78 0.00 45.67 3.41
3861 4026 4.927267 TCCAAGGGCAAATAGAAGAAGA 57.073 40.909 0.00 0.00 0.00 2.87
3862 4027 5.982890 TTTCCAAGGGCAAATAGAAGAAG 57.017 39.130 0.00 0.00 0.00 2.85
3863 4028 9.131791 GTATATTTCCAAGGGCAAATAGAAGAA 57.868 33.333 0.00 0.00 29.99 2.52
4356 4521 1.308998 AAAAGGAGCACACTGAACCG 58.691 50.000 0.00 0.00 0.00 4.44
4544 4715 1.599542 GCCTGTTCAGCATATTCGTCC 59.400 52.381 0.00 0.00 0.00 4.79
4642 4813 8.726988 GTCTGTGCACAAAACTAAATATCCTTA 58.273 33.333 21.98 0.00 0.00 2.69
4665 4836 0.759346 AACACCTGGAAAGAGCGTCT 59.241 50.000 0.00 0.00 0.00 4.18
4686 4857 1.466167 CAGCATTTCTCCGGTGAGTTG 59.534 52.381 6.29 9.37 39.75 3.16
4877 5052 0.024619 CTAGTTTTTAGCGCGCGGTC 59.975 55.000 39.46 23.36 0.00 4.79
4878 5053 0.668401 ACTAGTTTTTAGCGCGCGGT 60.668 50.000 37.43 37.43 0.00 5.68
4879 5054 0.441145 AACTAGTTTTTAGCGCGCGG 59.559 50.000 33.06 13.66 0.00 6.46
4880 5055 1.896193 CAAACTAGTTTTTAGCGCGCG 59.104 47.619 28.44 28.44 0.00 6.86
4881 5056 1.642360 GCAAACTAGTTTTTAGCGCGC 59.358 47.619 26.66 26.66 0.00 6.86
4882 5057 2.239201 GGCAAACTAGTTTTTAGCGCG 58.761 47.619 18.25 0.00 0.00 6.86
4883 5058 2.239201 CGGCAAACTAGTTTTTAGCGC 58.761 47.619 18.25 16.73 0.00 5.92
4884 5059 2.239201 GCGGCAAACTAGTTTTTAGCG 58.761 47.619 18.25 14.49 0.00 4.26
4885 5060 2.239201 CGCGGCAAACTAGTTTTTAGC 58.761 47.619 18.25 19.47 0.00 3.09
4906 5081 3.656045 AAAACCAGGCGAACGGCG 61.656 61.111 4.80 4.80 44.92 6.46
4948 5129 4.433102 CGCGTTGCATTTTAGCGT 57.567 50.000 0.00 0.00 44.96 5.07
4970 5151 1.681486 TATGCAATGCCCCGACGAGA 61.681 55.000 1.53 0.00 0.00 4.04
4975 5156 1.954733 GCCATATATGCAATGCCCCGA 60.955 52.381 7.24 0.00 0.00 5.14
5003 5184 8.728337 TGAATGTTTTCAAATCCATTTTGTGA 57.272 26.923 0.00 0.00 44.25 3.58
5089 5270 0.804989 GTGGGCATGAACTTCCGAAG 59.195 55.000 6.59 6.59 0.00 3.79
5090 5271 0.109532 TGTGGGCATGAACTTCCGAA 59.890 50.000 0.00 0.00 0.00 4.30
5091 5272 0.109532 TTGTGGGCATGAACTTCCGA 59.890 50.000 0.00 0.00 0.00 4.55
5093 5274 1.620822 ACTTGTGGGCATGAACTTCC 58.379 50.000 0.00 0.00 0.00 3.46
5094 5275 2.622942 TGAACTTGTGGGCATGAACTTC 59.377 45.455 0.00 0.00 0.00 3.01
5195 7089 2.673368 GCAAAGGAACATCGACGAAGAT 59.327 45.455 7.14 0.00 0.00 2.40
5198 7092 1.153353 GGCAAAGGAACATCGACGAA 58.847 50.000 0.00 0.00 0.00 3.85
5199 7093 1.011968 CGGCAAAGGAACATCGACGA 61.012 55.000 0.00 0.00 0.00 4.20
5201 7095 0.442699 GACGGCAAAGGAACATCGAC 59.557 55.000 0.00 0.00 0.00 4.20
5206 7100 3.744559 GCAGACGGCAAAGGAACA 58.255 55.556 0.00 0.00 43.97 3.18
5221 7115 1.227999 CGAAGAAGAACAAGGCGGCA 61.228 55.000 13.08 0.00 0.00 5.69
5517 7469 1.227664 CTCCTCTCCGCCTCCTACA 59.772 63.158 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.