Multiple sequence alignment - TraesCS3D01G298600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G298600 chr3D 100.000 3709 0 0 1 3709 412787228 412783520 0.000000e+00 6850
1 TraesCS3D01G298600 chr3D 79.736 227 34 10 3484 3702 345262724 345262502 1.780000e-33 154
2 TraesCS3D01G298600 chr3A 91.505 3343 134 45 410 3707 537506959 537510196 0.000000e+00 4462
3 TraesCS3D01G298600 chr3A 91.907 729 37 11 1809 2534 134613179 134613888 0.000000e+00 1000
4 TraesCS3D01G298600 chr3A 90.809 729 37 13 1809 2533 483816990 483817692 0.000000e+00 948
5 TraesCS3D01G298600 chr3A 91.667 156 9 3 1 154 123046982 123046829 2.900000e-51 213
6 TraesCS3D01G298600 chr3A 80.000 225 35 10 3485 3702 503718836 503718615 1.380000e-34 158
7 TraesCS3D01G298600 chr3B 94.579 2361 62 27 379 2723 539562196 539559886 0.000000e+00 3591
8 TraesCS3D01G298600 chr3B 85.612 417 54 5 3252 3667 539557744 539557333 2.050000e-117 433
9 TraesCS3D01G298600 chr2D 93.526 726 27 11 1813 2534 628411931 628412640 0.000000e+00 1062
10 TraesCS3D01G298600 chr2D 94.788 307 16 0 1090 1396 126739430 126739124 2.590000e-131 479
11 TraesCS3D01G298600 chr2D 92.810 153 8 2 1 152 586774030 586773880 6.240000e-53 219
12 TraesCS3D01G298600 chr2D 80.093 216 35 6 3484 3693 202059896 202060109 1.780000e-33 154
13 TraesCS3D01G298600 chr6A 93.023 731 27 12 1809 2534 204306262 204305551 0.000000e+00 1046
14 TraesCS3D01G298600 chr6A 92.593 729 32 11 1809 2534 473515808 473516517 0.000000e+00 1027
15 TraesCS3D01G298600 chr6A 92.055 730 35 12 1809 2534 328876597 328877307 0.000000e+00 1005
16 TraesCS3D01G298600 chr6A 91.918 730 36 13 1809 2534 136163650 136162940 0.000000e+00 1000
17 TraesCS3D01G298600 chr6A 88.235 731 41 14 1809 2534 462401568 462402258 0.000000e+00 832
18 TraesCS3D01G298600 chr5A 92.867 729 28 11 1809 2533 268344977 268345685 0.000000e+00 1037
19 TraesCS3D01G298600 chr5A 92.455 729 33 11 1809 2534 109668279 109668988 0.000000e+00 1022
20 TraesCS3D01G298600 chr1A 92.603 730 31 13 1809 2534 465252065 465252775 0.000000e+00 1027
21 TraesCS3D01G298600 chr1A 91.558 154 9 3 1 153 367438389 367438239 3.750000e-50 209
22 TraesCS3D01G298600 chr1A 80.000 225 35 10 3485 3702 502797407 502797186 1.380000e-34 158
23 TraesCS3D01G298600 chr2A 91.918 730 36 13 1809 2534 616455680 616454970 0.000000e+00 1000
24 TraesCS3D01G298600 chr2A 94.156 308 16 2 1090 1396 133346362 133346056 5.610000e-128 468
25 TraesCS3D01G298600 chr2A 92.667 150 8 2 1 149 166851576 166851429 2.900000e-51 213
26 TraesCS3D01G298600 chr2B 94.805 308 14 2 1090 1396 180423771 180423465 2.590000e-131 479
27 TraesCS3D01G298600 chr4A 93.137 306 19 2 1090 1394 409035615 409035919 7.310000e-122 448
28 TraesCS3D01G298600 chr4A 89.820 167 12 4 4 168 11777258 11777421 3.750000e-50 209
29 TraesCS3D01G298600 chr4D 92.810 306 20 2 1090 1394 179312503 179312807 3.400000e-120 442
30 TraesCS3D01G298600 chr4D 79.646 226 36 8 3484 3702 267996160 267995938 1.780000e-33 154
31 TraesCS3D01G298600 chr4D 80.184 217 33 8 3484 3693 398165894 398166107 1.780000e-33 154
32 TraesCS3D01G298600 chr4B 92.157 306 22 2 1090 1394 199190223 199190527 7.360000e-117 431
33 TraesCS3D01G298600 chr5D 94.000 150 6 2 1 149 487589722 487589869 1.340000e-54 224
34 TraesCS3D01G298600 chr1D 92.857 154 8 2 1 153 433907854 433907703 1.730000e-53 220
35 TraesCS3D01G298600 chr1D 92.105 152 9 2 1 151 257424757 257424608 1.040000e-50 211
36 TraesCS3D01G298600 chr1D 91.558 154 9 3 1 153 324703409 324703259 3.750000e-50 209
37 TraesCS3D01G298600 chr7D 80.184 217 33 8 3484 3693 24007513 24007726 1.780000e-33 154
38 TraesCS3D01G298600 chr7D 80.184 217 33 8 3484 3693 273885832 273886045 1.780000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G298600 chr3D 412783520 412787228 3708 True 6850 6850 100.0000 1 3709 1 chr3D.!!$R2 3708
1 TraesCS3D01G298600 chr3A 537506959 537510196 3237 False 4462 4462 91.5050 410 3707 1 chr3A.!!$F3 3297
2 TraesCS3D01G298600 chr3A 134613179 134613888 709 False 1000 1000 91.9070 1809 2534 1 chr3A.!!$F1 725
3 TraesCS3D01G298600 chr3A 483816990 483817692 702 False 948 948 90.8090 1809 2533 1 chr3A.!!$F2 724
4 TraesCS3D01G298600 chr3B 539557333 539562196 4863 True 2012 3591 90.0955 379 3667 2 chr3B.!!$R1 3288
5 TraesCS3D01G298600 chr2D 628411931 628412640 709 False 1062 1062 93.5260 1813 2534 1 chr2D.!!$F2 721
6 TraesCS3D01G298600 chr6A 204305551 204306262 711 True 1046 1046 93.0230 1809 2534 1 chr6A.!!$R2 725
7 TraesCS3D01G298600 chr6A 473515808 473516517 709 False 1027 1027 92.5930 1809 2534 1 chr6A.!!$F3 725
8 TraesCS3D01G298600 chr6A 328876597 328877307 710 False 1005 1005 92.0550 1809 2534 1 chr6A.!!$F1 725
9 TraesCS3D01G298600 chr6A 136162940 136163650 710 True 1000 1000 91.9180 1809 2534 1 chr6A.!!$R1 725
10 TraesCS3D01G298600 chr6A 462401568 462402258 690 False 832 832 88.2350 1809 2534 1 chr6A.!!$F2 725
11 TraesCS3D01G298600 chr5A 268344977 268345685 708 False 1037 1037 92.8670 1809 2533 1 chr5A.!!$F2 724
12 TraesCS3D01G298600 chr5A 109668279 109668988 709 False 1022 1022 92.4550 1809 2534 1 chr5A.!!$F1 725
13 TraesCS3D01G298600 chr1A 465252065 465252775 710 False 1027 1027 92.6030 1809 2534 1 chr1A.!!$F1 725
14 TraesCS3D01G298600 chr2A 616454970 616455680 710 True 1000 1000 91.9180 1809 2534 1 chr2A.!!$R3 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.030638 CCGACCCAACTGCAAAACTG 59.969 55.0 0.00 0.0 0.00 3.16 F
61 62 0.030638 CGACCCAACTGCAAAACTGG 59.969 55.0 0.00 0.0 0.00 4.00 F
212 213 0.106419 ACTTCTTTTTGCGGGGGACA 60.106 50.0 0.00 0.0 0.00 4.02 F
310 311 0.173708 GAGGGAGAGTACCGCAACTG 59.826 60.0 0.00 0.0 0.00 3.16 F
313 314 0.389948 GGAGAGTACCGCAACTGGTG 60.390 60.0 0.00 0.0 43.68 4.17 F
1052 1072 0.540830 ATCTCGGATCGGGGAGAAGG 60.541 60.0 8.95 0.0 42.16 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 1043 0.387112 GATCCGAGATGCGAGCAGAG 60.387 60.0 3.58 0.0 44.57 3.35 R
1052 1072 0.531753 GCCGAAAGCCTCAGATCCTC 60.532 60.0 0.00 0.0 34.35 3.71 R
1534 1560 0.739813 CGTCAATGTCCTTCCCCGTC 60.740 60.0 0.00 0.0 0.00 4.79 R
1970 1998 5.995282 TCAGTACAACGGATCAAACTCAAAT 59.005 36.0 0.00 0.0 0.00 2.32 R
2418 2471 0.319383 CCGCCTGCTCAGTATGCTAG 60.319 60.0 0.00 0.0 34.76 3.42 R
3135 4899 0.112995 ATCCGGGCATGGCAATATGT 59.887 50.0 22.06 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
26 27 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
27 28 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
28 29 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
29 30 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
50 51 4.700365 GCGCTTTGCCGACCCAAC 62.700 66.667 0.00 0.00 37.76 3.77
51 52 2.978010 CGCTTTGCCGACCCAACT 60.978 61.111 0.00 0.00 0.00 3.16
52 53 2.644992 GCTTTGCCGACCCAACTG 59.355 61.111 0.00 0.00 0.00 3.16
53 54 2.644992 CTTTGCCGACCCAACTGC 59.355 61.111 0.00 0.00 0.00 4.40
54 55 2.124109 TTTGCCGACCCAACTGCA 60.124 55.556 0.00 0.00 0.00 4.41
55 56 1.733402 CTTTGCCGACCCAACTGCAA 61.733 55.000 0.00 0.00 41.57 4.08
56 57 1.754621 TTGCCGACCCAACTGCAAA 60.755 52.632 0.00 0.00 40.46 3.68
57 58 1.323271 TTGCCGACCCAACTGCAAAA 61.323 50.000 0.00 0.00 40.46 2.44
58 59 1.299850 GCCGACCCAACTGCAAAAC 60.300 57.895 0.00 0.00 0.00 2.43
59 60 1.734388 GCCGACCCAACTGCAAAACT 61.734 55.000 0.00 0.00 0.00 2.66
60 61 0.030638 CCGACCCAACTGCAAAACTG 59.969 55.000 0.00 0.00 0.00 3.16
61 62 0.030638 CGACCCAACTGCAAAACTGG 59.969 55.000 0.00 0.00 0.00 4.00
63 64 1.069596 CCCAACTGCAAAACTGGGC 59.930 57.895 8.64 0.00 42.10 5.36
64 65 1.300080 CCAACTGCAAAACTGGGCG 60.300 57.895 0.00 0.00 0.00 6.13
65 66 1.300080 CAACTGCAAAACTGGGCGG 60.300 57.895 0.00 0.00 42.11 6.13
66 67 1.454847 AACTGCAAAACTGGGCGGA 60.455 52.632 0.00 0.00 39.67 5.54
67 68 1.734388 AACTGCAAAACTGGGCGGAC 61.734 55.000 0.00 0.00 39.67 4.79
68 69 3.254014 CTGCAAAACTGGGCGGACG 62.254 63.158 0.00 0.00 38.70 4.79
69 70 4.700365 GCAAAACTGGGCGGACGC 62.700 66.667 8.39 8.39 41.06 5.19
98 99 3.121019 CGCCCCAAACGGACAAAA 58.879 55.556 0.00 0.00 0.00 2.44
99 100 1.437986 CGCCCCAAACGGACAAAAA 59.562 52.632 0.00 0.00 0.00 1.94
114 115 2.893671 AAAAACGGACAAATGCGCC 58.106 47.368 4.18 0.00 44.76 6.53
118 119 4.160635 CGGACAAATGCGCCGTCC 62.161 66.667 19.71 19.71 44.79 4.79
119 120 4.160635 GGACAAATGCGCCGTCCG 62.161 66.667 16.42 0.29 39.86 4.79
120 121 3.419759 GACAAATGCGCCGTCCGT 61.420 61.111 4.18 0.00 39.71 4.69
121 122 2.961669 GACAAATGCGCCGTCCGTT 61.962 57.895 4.18 0.00 39.71 4.44
122 123 2.254051 CAAATGCGCCGTCCGTTT 59.746 55.556 4.18 0.00 39.71 3.60
123 124 2.080062 CAAATGCGCCGTCCGTTTG 61.080 57.895 4.18 3.18 39.71 2.93
124 125 3.262142 AAATGCGCCGTCCGTTTGG 62.262 57.895 4.18 0.00 39.71 3.28
130 131 4.675029 CCGTCCGTTTGGGTCGCT 62.675 66.667 0.00 0.00 44.53 4.93
131 132 3.110178 CGTCCGTTTGGGTCGCTC 61.110 66.667 0.00 0.00 40.30 5.03
132 133 2.741211 GTCCGTTTGGGTCGCTCC 60.741 66.667 0.00 0.00 37.00 4.70
133 134 3.235481 TCCGTTTGGGTCGCTCCA 61.235 61.111 0.00 0.00 38.11 3.86
134 135 2.046314 CCGTTTGGGTCGCTCCAT 60.046 61.111 0.00 0.00 36.58 3.41
135 136 1.674322 CCGTTTGGGTCGCTCCATT 60.674 57.895 0.00 0.00 36.58 3.16
136 137 1.501741 CGTTTGGGTCGCTCCATTG 59.498 57.895 0.00 0.00 36.58 2.82
137 138 1.883021 GTTTGGGTCGCTCCATTGG 59.117 57.895 0.00 0.00 36.58 3.16
138 139 0.608035 GTTTGGGTCGCTCCATTGGA 60.608 55.000 5.05 5.05 36.58 3.53
151 152 3.376546 CTCCATTGGAGTTGCTCTAAAGC 59.623 47.826 22.45 0.00 45.35 3.51
152 153 5.695041 CTCCATTGGAGTTGCTCTAAAGCC 61.695 50.000 22.45 0.00 44.95 4.35
161 162 2.943449 GCTCTAAAGCCGAGTAGTGT 57.057 50.000 0.00 0.00 43.10 3.55
162 163 2.531206 GCTCTAAAGCCGAGTAGTGTG 58.469 52.381 0.00 0.00 43.10 3.82
163 164 2.163815 GCTCTAAAGCCGAGTAGTGTGA 59.836 50.000 0.00 0.00 43.10 3.58
164 165 3.181485 GCTCTAAAGCCGAGTAGTGTGAT 60.181 47.826 0.00 0.00 43.10 3.06
165 166 4.036498 GCTCTAAAGCCGAGTAGTGTGATA 59.964 45.833 0.00 0.00 43.10 2.15
166 167 5.496133 TCTAAAGCCGAGTAGTGTGATAC 57.504 43.478 0.00 0.00 0.00 2.24
167 168 4.945543 TCTAAAGCCGAGTAGTGTGATACA 59.054 41.667 0.00 0.00 0.00 2.29
168 169 4.530710 AAAGCCGAGTAGTGTGATACAA 57.469 40.909 0.00 0.00 0.00 2.41
169 170 3.784701 AGCCGAGTAGTGTGATACAAG 57.215 47.619 0.00 0.00 0.00 3.16
170 171 3.090037 AGCCGAGTAGTGTGATACAAGT 58.910 45.455 0.00 0.00 0.00 3.16
171 172 4.267536 AGCCGAGTAGTGTGATACAAGTA 58.732 43.478 0.00 0.00 0.00 2.24
172 173 4.888239 AGCCGAGTAGTGTGATACAAGTAT 59.112 41.667 0.00 0.00 0.00 2.12
173 174 6.060136 AGCCGAGTAGTGTGATACAAGTATA 58.940 40.000 0.00 0.00 0.00 1.47
174 175 6.544931 AGCCGAGTAGTGTGATACAAGTATAA 59.455 38.462 0.00 0.00 0.00 0.98
175 176 6.636044 GCCGAGTAGTGTGATACAAGTATAAC 59.364 42.308 1.43 1.43 0.00 1.89
176 177 7.468357 GCCGAGTAGTGTGATACAAGTATAACT 60.468 40.741 8.73 8.01 29.93 2.24
177 178 9.049523 CCGAGTAGTGTGATACAAGTATAACTA 57.950 37.037 8.73 7.26 29.93 2.24
181 182 9.947669 GTAGTGTGATACAAGTATAACTAGTGG 57.052 37.037 0.00 0.00 29.93 4.00
182 183 7.490000 AGTGTGATACAAGTATAACTAGTGGC 58.510 38.462 0.00 0.00 29.93 5.01
183 184 7.123697 AGTGTGATACAAGTATAACTAGTGGCA 59.876 37.037 0.00 0.00 29.93 4.92
184 185 7.435488 GTGTGATACAAGTATAACTAGTGGCAG 59.565 40.741 0.00 0.00 29.93 4.85
185 186 7.340999 TGTGATACAAGTATAACTAGTGGCAGA 59.659 37.037 0.00 0.00 29.93 4.26
186 187 8.195436 GTGATACAAGTATAACTAGTGGCAGAA 58.805 37.037 0.00 0.00 0.00 3.02
187 188 8.755028 TGATACAAGTATAACTAGTGGCAGAAA 58.245 33.333 0.00 0.00 0.00 2.52
188 189 9.595823 GATACAAGTATAACTAGTGGCAGAAAA 57.404 33.333 0.00 0.00 0.00 2.29
189 190 7.907214 ACAAGTATAACTAGTGGCAGAAAAG 57.093 36.000 0.00 0.00 0.00 2.27
190 191 7.450903 ACAAGTATAACTAGTGGCAGAAAAGT 58.549 34.615 0.00 0.00 0.00 2.66
191 192 7.937394 ACAAGTATAACTAGTGGCAGAAAAGTT 59.063 33.333 0.00 0.00 34.86 2.66
192 193 9.431887 CAAGTATAACTAGTGGCAGAAAAGTTA 57.568 33.333 0.00 11.15 37.14 2.24
194 195 9.433153 AGTATAACTAGTGGCAGAAAAGTTAAC 57.567 33.333 0.00 0.00 36.53 2.01
195 196 9.433153 GTATAACTAGTGGCAGAAAAGTTAACT 57.567 33.333 1.12 1.12 36.53 2.24
196 197 8.919777 ATAACTAGTGGCAGAAAAGTTAACTT 57.080 30.769 15.22 15.22 36.53 2.66
197 198 6.862711 ACTAGTGGCAGAAAAGTTAACTTC 57.137 37.500 20.78 10.04 34.61 3.01
198 199 6.592870 ACTAGTGGCAGAAAAGTTAACTTCT 58.407 36.000 20.78 12.19 34.61 2.85
199 200 7.054751 ACTAGTGGCAGAAAAGTTAACTTCTT 58.945 34.615 20.78 15.94 34.61 2.52
200 201 6.775594 AGTGGCAGAAAAGTTAACTTCTTT 57.224 33.333 20.78 12.58 36.81 2.52
201 202 7.170393 AGTGGCAGAAAAGTTAACTTCTTTT 57.830 32.000 20.78 11.88 44.40 2.27
202 203 7.611770 AGTGGCAGAAAAGTTAACTTCTTTTT 58.388 30.769 20.78 11.52 42.63 1.94
203 204 7.545615 AGTGGCAGAAAAGTTAACTTCTTTTTG 59.454 33.333 20.78 17.03 42.63 2.44
204 205 6.312672 TGGCAGAAAAGTTAACTTCTTTTTGC 59.687 34.615 25.60 25.60 42.63 3.68
205 206 6.402816 GCAGAAAAGTTAACTTCTTTTTGCG 58.597 36.000 22.30 10.00 42.63 4.85
206 207 6.507929 GCAGAAAAGTTAACTTCTTTTTGCGG 60.508 38.462 22.30 10.11 42.63 5.69
207 208 6.019881 CAGAAAAGTTAACTTCTTTTTGCGGG 60.020 38.462 20.78 0.00 42.63 6.13
208 209 4.316205 AAGTTAACTTCTTTTTGCGGGG 57.684 40.909 15.22 0.00 0.00 5.73
209 210 2.626266 AGTTAACTTCTTTTTGCGGGGG 59.374 45.455 1.12 0.00 0.00 5.40
210 211 2.624364 GTTAACTTCTTTTTGCGGGGGA 59.376 45.455 0.00 0.00 0.00 4.81
211 212 1.037493 AACTTCTTTTTGCGGGGGAC 58.963 50.000 0.00 0.00 0.00 4.46
212 213 0.106419 ACTTCTTTTTGCGGGGGACA 60.106 50.000 0.00 0.00 0.00 4.02
213 214 0.598065 CTTCTTTTTGCGGGGGACAG 59.402 55.000 0.00 0.00 0.00 3.51
214 215 0.183971 TTCTTTTTGCGGGGGACAGA 59.816 50.000 0.00 0.00 0.00 3.41
215 216 0.183971 TCTTTTTGCGGGGGACAGAA 59.816 50.000 0.00 0.00 0.00 3.02
216 217 1.036707 CTTTTTGCGGGGGACAGAAA 58.963 50.000 0.00 0.00 0.00 2.52
217 218 1.618343 CTTTTTGCGGGGGACAGAAAT 59.382 47.619 0.00 0.00 0.00 2.17
218 219 0.965439 TTTTGCGGGGGACAGAAATG 59.035 50.000 0.00 0.00 0.00 2.32
219 220 0.178975 TTTGCGGGGGACAGAAATGT 60.179 50.000 0.00 0.00 0.00 2.71
220 221 0.178975 TTGCGGGGGACAGAAATGTT 60.179 50.000 0.00 0.00 0.00 2.71
221 222 0.693622 TGCGGGGGACAGAAATGTTA 59.306 50.000 0.00 0.00 0.00 2.41
222 223 1.283613 TGCGGGGGACAGAAATGTTAT 59.716 47.619 0.00 0.00 0.00 1.89
223 224 2.291282 TGCGGGGGACAGAAATGTTATT 60.291 45.455 0.00 0.00 0.00 1.40
224 225 3.054287 TGCGGGGGACAGAAATGTTATTA 60.054 43.478 0.00 0.00 0.00 0.98
225 226 3.949113 GCGGGGGACAGAAATGTTATTAA 59.051 43.478 0.00 0.00 0.00 1.40
226 227 4.399934 GCGGGGGACAGAAATGTTATTAAA 59.600 41.667 0.00 0.00 0.00 1.52
227 228 5.105675 GCGGGGGACAGAAATGTTATTAAAA 60.106 40.000 0.00 0.00 0.00 1.52
228 229 6.406512 GCGGGGGACAGAAATGTTATTAAAAT 60.407 38.462 0.00 0.00 0.00 1.82
229 230 7.552459 CGGGGGACAGAAATGTTATTAAAATT 58.448 34.615 0.00 0.00 0.00 1.82
230 231 7.491048 CGGGGGACAGAAATGTTATTAAAATTG 59.509 37.037 0.00 0.00 0.00 2.32
231 232 8.318412 GGGGGACAGAAATGTTATTAAAATTGT 58.682 33.333 0.00 0.00 0.00 2.71
232 233 9.150348 GGGGACAGAAATGTTATTAAAATTGTG 57.850 33.333 0.00 0.00 0.00 3.33
233 234 9.705290 GGGACAGAAATGTTATTAAAATTGTGT 57.295 29.630 7.06 7.06 0.00 3.72
246 247 8.970691 ATTAAAATTGTGTCATCAGTTACTGC 57.029 30.769 7.61 0.00 0.00 4.40
247 248 4.668576 AATTGTGTCATCAGTTACTGCG 57.331 40.909 7.61 1.42 0.00 5.18
248 249 2.812358 TGTGTCATCAGTTACTGCGT 57.188 45.000 7.61 0.00 0.00 5.24
249 250 2.672714 TGTGTCATCAGTTACTGCGTC 58.327 47.619 7.61 0.29 0.00 5.19
250 251 1.649171 GTGTCATCAGTTACTGCGTCG 59.351 52.381 7.61 0.00 0.00 5.12
251 252 1.268625 TGTCATCAGTTACTGCGTCGT 59.731 47.619 7.61 0.00 0.00 4.34
252 253 2.485038 TGTCATCAGTTACTGCGTCGTA 59.515 45.455 7.61 0.00 0.00 3.43
253 254 2.844804 GTCATCAGTTACTGCGTCGTAC 59.155 50.000 7.61 0.00 0.00 3.67
254 255 2.485038 TCATCAGTTACTGCGTCGTACA 59.515 45.455 7.61 0.00 0.00 2.90
255 256 2.606717 TCAGTTACTGCGTCGTACAG 57.393 50.000 7.61 0.00 41.08 2.74
257 258 3.066380 TCAGTTACTGCGTCGTACAGTA 58.934 45.455 7.61 8.19 46.32 2.74
258 259 3.686241 TCAGTTACTGCGTCGTACAGTAT 59.314 43.478 7.61 0.00 46.88 2.12
259 260 4.869861 TCAGTTACTGCGTCGTACAGTATA 59.130 41.667 7.61 3.57 46.88 1.47
260 261 5.525012 TCAGTTACTGCGTCGTACAGTATAT 59.475 40.000 7.61 3.77 46.88 0.86
261 262 6.037500 TCAGTTACTGCGTCGTACAGTATATT 59.962 38.462 7.61 1.70 46.88 1.28
262 263 6.690098 CAGTTACTGCGTCGTACAGTATATTT 59.310 38.462 11.82 0.00 46.88 1.40
263 264 7.219535 CAGTTACTGCGTCGTACAGTATATTTT 59.780 37.037 11.82 0.00 46.88 1.82
264 265 8.397906 AGTTACTGCGTCGTACAGTATATTTTA 58.602 33.333 11.82 0.00 46.88 1.52
265 266 8.464480 GTTACTGCGTCGTACAGTATATTTTAC 58.536 37.037 11.82 4.80 46.88 2.01
266 267 6.789262 ACTGCGTCGTACAGTATATTTTACT 58.211 36.000 3.98 0.00 46.32 2.24
267 268 6.909357 ACTGCGTCGTACAGTATATTTTACTC 59.091 38.462 3.98 0.00 46.32 2.59
268 269 6.784176 TGCGTCGTACAGTATATTTTACTCA 58.216 36.000 0.00 0.00 0.00 3.41
269 270 6.688385 TGCGTCGTACAGTATATTTTACTCAC 59.312 38.462 0.00 0.00 0.00 3.51
270 271 6.141369 GCGTCGTACAGTATATTTTACTCACC 59.859 42.308 0.00 0.00 0.00 4.02
271 272 6.355405 CGTCGTACAGTATATTTTACTCACCG 59.645 42.308 0.00 0.00 0.00 4.94
272 273 6.634436 GTCGTACAGTATATTTTACTCACCGG 59.366 42.308 0.00 0.00 0.00 5.28
273 274 6.318648 TCGTACAGTATATTTTACTCACCGGT 59.681 38.462 0.00 0.00 0.00 5.28
274 275 6.634436 CGTACAGTATATTTTACTCACCGGTC 59.366 42.308 2.59 0.00 0.00 4.79
275 276 6.534475 ACAGTATATTTTACTCACCGGTCA 57.466 37.500 2.59 0.00 0.00 4.02
276 277 6.938507 ACAGTATATTTTACTCACCGGTCAA 58.061 36.000 2.59 0.00 0.00 3.18
277 278 7.388437 ACAGTATATTTTACTCACCGGTCAAA 58.612 34.615 2.59 0.00 0.00 2.69
278 279 8.044908 ACAGTATATTTTACTCACCGGTCAAAT 58.955 33.333 2.59 7.24 31.01 2.32
279 280 8.548721 CAGTATATTTTACTCACCGGTCAAATC 58.451 37.037 2.59 0.00 29.50 2.17
280 281 8.483758 AGTATATTTTACTCACCGGTCAAATCT 58.516 33.333 2.59 0.56 29.50 2.40
281 282 5.880054 ATTTTACTCACCGGTCAAATCTG 57.120 39.130 2.59 0.00 0.00 2.90
282 283 4.610605 TTTACTCACCGGTCAAATCTGA 57.389 40.909 2.59 0.00 0.00 3.27
283 284 4.610605 TTACTCACCGGTCAAATCTGAA 57.389 40.909 2.59 0.00 31.88 3.02
284 285 3.485463 ACTCACCGGTCAAATCTGAAA 57.515 42.857 2.59 0.00 31.88 2.69
285 286 3.139077 ACTCACCGGTCAAATCTGAAAC 58.861 45.455 2.59 0.00 31.88 2.78
286 287 3.181454 ACTCACCGGTCAAATCTGAAACT 60.181 43.478 2.59 0.00 31.88 2.66
287 288 4.039973 ACTCACCGGTCAAATCTGAAACTA 59.960 41.667 2.59 0.00 31.88 2.24
288 289 4.566004 TCACCGGTCAAATCTGAAACTAG 58.434 43.478 2.59 0.00 31.88 2.57
289 290 4.282449 TCACCGGTCAAATCTGAAACTAGA 59.718 41.667 2.59 0.00 31.88 2.43
290 291 4.389077 CACCGGTCAAATCTGAAACTAGAC 59.611 45.833 2.59 0.00 31.88 2.59
291 292 3.612860 CCGGTCAAATCTGAAACTAGACG 59.387 47.826 0.00 0.00 31.88 4.18
292 293 4.482386 CGGTCAAATCTGAAACTAGACGA 58.518 43.478 0.00 0.00 31.88 4.20
293 294 4.559251 CGGTCAAATCTGAAACTAGACGAG 59.441 45.833 0.00 0.00 31.88 4.18
294 295 4.865365 GGTCAAATCTGAAACTAGACGAGG 59.135 45.833 0.00 0.00 31.88 4.63
295 296 4.865365 GTCAAATCTGAAACTAGACGAGGG 59.135 45.833 0.00 0.00 31.88 4.30
296 297 4.770531 TCAAATCTGAAACTAGACGAGGGA 59.229 41.667 0.00 0.00 0.00 4.20
297 298 4.993029 AATCTGAAACTAGACGAGGGAG 57.007 45.455 0.00 0.00 0.00 4.30
298 299 3.715638 TCTGAAACTAGACGAGGGAGA 57.284 47.619 0.00 0.00 0.00 3.71
299 300 3.611970 TCTGAAACTAGACGAGGGAGAG 58.388 50.000 0.00 0.00 0.00 3.20
300 301 3.009253 TCTGAAACTAGACGAGGGAGAGT 59.991 47.826 0.00 0.00 0.00 3.24
301 302 4.224594 TCTGAAACTAGACGAGGGAGAGTA 59.775 45.833 0.00 0.00 0.00 2.59
302 303 4.260170 TGAAACTAGACGAGGGAGAGTAC 58.740 47.826 0.00 0.00 0.00 2.73
303 304 3.280197 AACTAGACGAGGGAGAGTACC 57.720 52.381 0.00 0.00 0.00 3.34
304 305 1.138661 ACTAGACGAGGGAGAGTACCG 59.861 57.143 0.00 0.00 0.00 4.02
305 306 0.179062 TAGACGAGGGAGAGTACCGC 60.179 60.000 0.00 0.00 0.00 5.68
306 307 1.748122 GACGAGGGAGAGTACCGCA 60.748 63.158 0.00 0.00 0.00 5.69
307 308 1.303888 ACGAGGGAGAGTACCGCAA 60.304 57.895 0.00 0.00 0.00 4.85
308 309 1.139095 CGAGGGAGAGTACCGCAAC 59.861 63.158 0.00 0.00 0.00 4.17
309 310 1.313812 CGAGGGAGAGTACCGCAACT 61.314 60.000 0.00 0.00 0.00 3.16
310 311 0.173708 GAGGGAGAGTACCGCAACTG 59.826 60.000 0.00 0.00 0.00 3.16
311 312 1.218316 GGGAGAGTACCGCAACTGG 59.782 63.158 0.00 0.00 0.00 4.00
312 313 1.542187 GGGAGAGTACCGCAACTGGT 61.542 60.000 0.00 0.00 46.26 4.00
313 314 0.389948 GGAGAGTACCGCAACTGGTG 60.390 60.000 0.00 0.00 43.68 4.17
325 326 3.159353 CAACTGGTGCATTGATGGATG 57.841 47.619 0.00 0.00 0.00 3.51
326 327 2.756207 CAACTGGTGCATTGATGGATGA 59.244 45.455 0.00 0.00 0.00 2.92
327 328 3.090210 ACTGGTGCATTGATGGATGAA 57.910 42.857 0.00 0.00 0.00 2.57
328 329 3.021695 ACTGGTGCATTGATGGATGAAG 58.978 45.455 0.00 0.00 0.00 3.02
329 330 3.284617 CTGGTGCATTGATGGATGAAGA 58.715 45.455 0.00 0.00 0.00 2.87
330 331 3.697542 CTGGTGCATTGATGGATGAAGAA 59.302 43.478 0.00 0.00 0.00 2.52
331 332 3.697542 TGGTGCATTGATGGATGAAGAAG 59.302 43.478 0.00 0.00 0.00 2.85
332 333 3.698040 GGTGCATTGATGGATGAAGAAGT 59.302 43.478 0.00 0.00 0.00 3.01
333 334 4.159135 GGTGCATTGATGGATGAAGAAGTT 59.841 41.667 0.00 0.00 0.00 2.66
334 335 5.357878 GGTGCATTGATGGATGAAGAAGTTA 59.642 40.000 0.00 0.00 0.00 2.24
335 336 6.127647 GGTGCATTGATGGATGAAGAAGTTAA 60.128 38.462 0.00 0.00 0.00 2.01
336 337 6.749118 GTGCATTGATGGATGAAGAAGTTAAC 59.251 38.462 0.00 0.00 0.00 2.01
337 338 6.433716 TGCATTGATGGATGAAGAAGTTAACA 59.566 34.615 8.61 0.00 0.00 2.41
338 339 7.039853 TGCATTGATGGATGAAGAAGTTAACAA 60.040 33.333 8.61 0.00 0.00 2.83
339 340 7.977853 GCATTGATGGATGAAGAAGTTAACAAT 59.022 33.333 8.61 0.00 0.00 2.71
342 343 9.513906 TTGATGGATGAAGAAGTTAACAATACA 57.486 29.630 8.61 2.08 0.00 2.29
343 344 8.946085 TGATGGATGAAGAAGTTAACAATACAC 58.054 33.333 8.61 0.00 0.00 2.90
344 345 7.681939 TGGATGAAGAAGTTAACAATACACC 57.318 36.000 8.61 2.64 0.00 4.16
345 346 6.657541 TGGATGAAGAAGTTAACAATACACCC 59.342 38.462 8.61 2.75 0.00 4.61
346 347 6.884836 GGATGAAGAAGTTAACAATACACCCT 59.115 38.462 8.61 0.00 0.00 4.34
347 348 8.044908 GGATGAAGAAGTTAACAATACACCCTA 58.955 37.037 8.61 0.00 0.00 3.53
348 349 9.614792 GATGAAGAAGTTAACAATACACCCTAT 57.385 33.333 8.61 0.00 0.00 2.57
349 350 9.614792 ATGAAGAAGTTAACAATACACCCTATC 57.385 33.333 8.61 0.00 0.00 2.08
350 351 7.762615 TGAAGAAGTTAACAATACACCCTATCG 59.237 37.037 8.61 0.00 0.00 2.92
351 352 6.579865 AGAAGTTAACAATACACCCTATCGG 58.420 40.000 8.61 0.00 37.81 4.18
353 354 5.910614 AGTTAACAATACACCCTATCGGTC 58.089 41.667 8.61 0.00 43.58 4.79
354 355 5.422970 AGTTAACAATACACCCTATCGGTCA 59.577 40.000 8.61 0.00 43.58 4.02
355 356 4.829872 AACAATACACCCTATCGGTCAA 57.170 40.909 0.00 0.00 43.58 3.18
356 357 4.829872 ACAATACACCCTATCGGTCAAA 57.170 40.909 0.00 0.00 43.58 2.69
357 358 5.168647 ACAATACACCCTATCGGTCAAAA 57.831 39.130 0.00 0.00 43.58 2.44
358 359 5.562635 ACAATACACCCTATCGGTCAAAAA 58.437 37.500 0.00 0.00 43.58 1.94
359 360 6.184789 ACAATACACCCTATCGGTCAAAAAT 58.815 36.000 0.00 0.00 43.58 1.82
360 361 7.340256 ACAATACACCCTATCGGTCAAAAATA 58.660 34.615 0.00 0.00 43.58 1.40
361 362 7.830201 ACAATACACCCTATCGGTCAAAAATAA 59.170 33.333 0.00 0.00 43.58 1.40
362 363 8.846211 CAATACACCCTATCGGTCAAAAATAAT 58.154 33.333 0.00 0.00 43.58 1.28
365 366 8.810990 ACACCCTATCGGTCAAAAATAATAAA 57.189 30.769 0.00 0.00 43.58 1.40
366 367 9.416284 ACACCCTATCGGTCAAAAATAATAAAT 57.584 29.630 0.00 0.00 43.58 1.40
367 368 9.677567 CACCCTATCGGTCAAAAATAATAAATG 57.322 33.333 0.00 0.00 43.58 2.32
368 369 8.856103 ACCCTATCGGTCAAAAATAATAAATGG 58.144 33.333 0.00 0.00 43.58 3.16
369 370 7.812669 CCCTATCGGTCAAAAATAATAAATGGC 59.187 37.037 0.00 0.00 0.00 4.40
370 371 8.576442 CCTATCGGTCAAAAATAATAAATGGCT 58.424 33.333 0.00 0.00 0.00 4.75
371 372 9.398170 CTATCGGTCAAAAATAATAAATGGCTG 57.602 33.333 0.00 0.00 0.00 4.85
372 373 6.568869 TCGGTCAAAAATAATAAATGGCTGG 58.431 36.000 0.00 0.00 0.00 4.85
373 374 6.153680 TCGGTCAAAAATAATAAATGGCTGGT 59.846 34.615 0.00 0.00 0.00 4.00
374 375 6.255453 CGGTCAAAAATAATAAATGGCTGGTG 59.745 38.462 0.00 0.00 0.00 4.17
375 376 7.102993 GGTCAAAAATAATAAATGGCTGGTGT 58.897 34.615 0.00 0.00 0.00 4.16
376 377 8.254508 GGTCAAAAATAATAAATGGCTGGTGTA 58.745 33.333 0.00 0.00 0.00 2.90
377 378 9.816354 GTCAAAAATAATAAATGGCTGGTGTAT 57.184 29.630 0.00 0.00 0.00 2.29
386 387 6.693315 AAATGGCTGGTGTATTGTATACAC 57.307 37.500 17.49 17.49 45.07 2.90
650 669 1.202031 GGCGAAAGTAAGCATTGACCG 60.202 52.381 0.00 0.00 34.54 4.79
1021 1041 1.071471 CACACACGCCTTCCTCCTT 59.929 57.895 0.00 0.00 0.00 3.36
1022 1042 0.951040 CACACACGCCTTCCTCCTTC 60.951 60.000 0.00 0.00 0.00 3.46
1023 1043 1.376037 CACACGCCTTCCTCCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
1024 1044 1.536662 ACACGCCTTCCTCCTTCCT 60.537 57.895 0.00 0.00 0.00 3.36
1052 1072 0.540830 ATCTCGGATCGGGGAGAAGG 60.541 60.000 8.95 0.00 42.16 3.46
1068 1088 2.771372 AGAAGGAGGATCTGAGGCTTTC 59.229 50.000 0.00 0.00 33.73 2.62
1160 1180 1.272480 TGGACTTCCTCGAGATGTGGA 60.272 52.381 15.71 0.00 38.46 4.02
1442 1462 8.879759 TCTTTTTCACTTCCGTTATCATATCAC 58.120 33.333 0.00 0.00 0.00 3.06
1450 1470 6.978674 TCCGTTATCATATCACCTCTTCTT 57.021 37.500 0.00 0.00 0.00 2.52
1451 1471 6.749139 TCCGTTATCATATCACCTCTTCTTG 58.251 40.000 0.00 0.00 0.00 3.02
1452 1472 5.928839 CCGTTATCATATCACCTCTTCTTGG 59.071 44.000 0.00 0.00 0.00 3.61
1453 1473 6.239317 CCGTTATCATATCACCTCTTCTTGGA 60.239 42.308 0.00 0.00 0.00 3.53
1454 1474 6.865726 CGTTATCATATCACCTCTTCTTGGAG 59.134 42.308 0.00 0.00 0.00 3.86
1475 1501 5.179742 GGAGTGGAGTCACATAGTATACGAG 59.820 48.000 0.00 0.00 45.91 4.18
1534 1560 4.722700 CAGGTGGCCAAGGACCCG 62.723 72.222 7.24 0.00 32.03 5.28
1549 1575 2.987125 CCGACGGGGAAGGACATT 59.013 61.111 5.81 0.00 38.47 2.71
1970 1998 7.042590 CCAACTAAACTAAACACACACATCGTA 60.043 37.037 0.00 0.00 0.00 3.43
1996 2030 4.988540 TGAGTTTGATCCGTTGTACTGAAG 59.011 41.667 0.00 0.00 0.00 3.02
1997 2031 4.957296 AGTTTGATCCGTTGTACTGAAGT 58.043 39.130 0.00 0.00 0.00 3.01
1998 2032 6.092955 AGTTTGATCCGTTGTACTGAAGTA 57.907 37.500 0.00 0.00 0.00 2.24
1999 2033 6.518493 AGTTTGATCCGTTGTACTGAAGTAA 58.482 36.000 0.00 0.00 31.52 2.24
2000 2034 6.645415 AGTTTGATCCGTTGTACTGAAGTAAG 59.355 38.462 0.00 0.00 31.52 2.34
2001 2035 5.717078 TGATCCGTTGTACTGAAGTAAGT 57.283 39.130 0.00 0.00 31.52 2.24
2002 2036 6.822667 TGATCCGTTGTACTGAAGTAAGTA 57.177 37.500 0.00 0.00 31.52 2.24
2003 2037 7.400599 TGATCCGTTGTACTGAAGTAAGTAT 57.599 36.000 0.00 0.00 35.20 2.12
2004 2038 7.833786 TGATCCGTTGTACTGAAGTAAGTATT 58.166 34.615 0.00 0.00 35.20 1.89
2005 2039 8.959548 TGATCCGTTGTACTGAAGTAAGTATTA 58.040 33.333 0.00 0.00 35.20 0.98
2382 2431 2.437359 CGGCAAGCTCAAGGGGAG 60.437 66.667 0.00 0.00 46.93 4.30
2724 2783 4.081406 TCAATAAGCATTGCAACTGTCCT 58.919 39.130 11.91 0.00 41.21 3.85
2738 2797 3.668447 ACTGTCCTTGTGTATGCTTCTG 58.332 45.455 0.00 0.00 0.00 3.02
2801 2894 4.101119 TCGGTTATTCCTTGGAATCTCTCC 59.899 45.833 17.14 13.58 45.64 3.71
2836 2929 0.033781 TTGCCTGCATTGAAGCCAAC 59.966 50.000 0.00 0.00 34.72 3.77
2845 2938 0.318869 TTGAAGCCAACGCATTGCAG 60.319 50.000 9.69 4.31 37.52 4.41
2851 2944 2.023223 CAACGCATTGCAGCAACCC 61.023 57.895 10.85 3.28 0.00 4.11
2852 2945 2.202395 AACGCATTGCAGCAACCCT 61.202 52.632 10.85 0.00 0.00 4.34
2853 2946 0.893270 AACGCATTGCAGCAACCCTA 60.893 50.000 10.85 0.00 0.00 3.53
2854 2947 1.137404 CGCATTGCAGCAACCCTAC 59.863 57.895 10.85 0.00 0.00 3.18
2855 2948 1.308069 CGCATTGCAGCAACCCTACT 61.308 55.000 10.85 0.00 0.00 2.57
2856 2949 0.453390 GCATTGCAGCAACCCTACTC 59.547 55.000 10.85 0.00 0.00 2.59
2863 2956 2.093447 GCAGCAACCCTACTCACATAGT 60.093 50.000 0.00 0.00 42.62 2.12
2880 2973 7.097192 TCACATAGTTTAATATCAGCCCGATC 58.903 38.462 0.00 0.00 35.39 3.69
2881 2974 6.035005 CACATAGTTTAATATCAGCCCGATCG 59.965 42.308 8.51 8.51 35.39 3.69
2882 2975 4.866508 AGTTTAATATCAGCCCGATCGA 57.133 40.909 18.66 0.00 35.39 3.59
2895 2988 3.240069 CCCGATCGACATAATAACCGTC 58.760 50.000 18.66 0.00 0.00 4.79
2919 3020 1.195115 TTATGAGAGAAGGCCAGCGT 58.805 50.000 5.01 0.00 0.00 5.07
2933 3034 2.107953 GCGTGGCCATCTCCTCTC 59.892 66.667 9.72 0.00 0.00 3.20
2936 3037 1.743321 CGTGGCCATCTCCTCTCTCC 61.743 65.000 9.72 0.00 0.00 3.71
2937 3038 1.456518 TGGCCATCTCCTCTCTCCG 60.457 63.158 0.00 0.00 0.00 4.63
2939 3040 1.460273 GGCCATCTCCTCTCTCCGTC 61.460 65.000 0.00 0.00 0.00 4.79
2940 3041 0.753479 GCCATCTCCTCTCTCCGTCA 60.753 60.000 0.00 0.00 0.00 4.35
2941 3042 1.769026 CCATCTCCTCTCTCCGTCAA 58.231 55.000 0.00 0.00 0.00 3.18
2942 3043 2.315176 CCATCTCCTCTCTCCGTCAAT 58.685 52.381 0.00 0.00 0.00 2.57
2943 3044 3.491342 CCATCTCCTCTCTCCGTCAATA 58.509 50.000 0.00 0.00 0.00 1.90
2944 3045 3.505680 CCATCTCCTCTCTCCGTCAATAG 59.494 52.174 0.00 0.00 0.00 1.73
2946 3047 3.546724 TCTCCTCTCTCCGTCAATAGTG 58.453 50.000 0.00 0.00 0.00 2.74
2948 3049 1.751351 CCTCTCTCCGTCAATAGTGCA 59.249 52.381 0.00 0.00 0.00 4.57
2949 3050 2.223688 CCTCTCTCCGTCAATAGTGCAG 60.224 54.545 0.00 0.00 0.00 4.41
2950 3051 2.685388 CTCTCTCCGTCAATAGTGCAGA 59.315 50.000 0.00 0.00 0.00 4.26
2951 3052 2.423892 TCTCTCCGTCAATAGTGCAGAC 59.576 50.000 0.00 0.00 0.00 3.51
2952 3053 2.425312 CTCTCCGTCAATAGTGCAGACT 59.575 50.000 0.00 0.00 36.07 3.24
2953 3054 2.164422 TCTCCGTCAATAGTGCAGACTG 59.836 50.000 0.00 0.00 33.21 3.51
2987 3088 0.670162 CCGGGAAGCATGCCAATTAG 59.330 55.000 15.66 1.74 32.29 1.73
3001 3102 4.156455 CCAATTAGTGGTGGTCTGCTAT 57.844 45.455 0.00 0.00 43.20 2.97
3008 3109 0.322456 GGTGGTCTGCTATGTGCCAA 60.322 55.000 0.00 0.00 42.00 4.52
3048 3149 5.163216 ACATCATGTTTCCCACCACATTTTT 60.163 36.000 0.00 0.00 30.90 1.94
3064 3165 4.577677 TTCCGTTGCCTGGCAGCA 62.578 61.111 30.55 12.50 39.68 4.41
3135 4899 2.184533 TCGAATGCCTCCACCTTTCTA 58.815 47.619 0.00 0.00 0.00 2.10
3140 4904 5.625150 GAATGCCTCCACCTTTCTACATAT 58.375 41.667 0.00 0.00 0.00 1.78
3141 4905 5.653255 ATGCCTCCACCTTTCTACATATT 57.347 39.130 0.00 0.00 0.00 1.28
3148 4912 4.261741 CCACCTTTCTACATATTGCCATGC 60.262 45.833 0.00 0.00 0.00 4.06
3152 4916 1.167851 CTACATATTGCCATGCCCGG 58.832 55.000 0.00 0.00 0.00 5.73
3174 4938 1.142097 GCTCTTGTCCCGCCTAGTC 59.858 63.158 0.00 0.00 0.00 2.59
3221 4988 1.324736 CGAATAGCTCTTCACCGTTGC 59.675 52.381 11.88 0.00 0.00 4.17
3249 5042 0.676151 CCACTCTTGAAGGAGGCAGC 60.676 60.000 0.00 0.00 37.63 5.25
3351 5144 0.673985 CTCGATGAGTGGCCGGATTA 59.326 55.000 5.05 0.00 0.00 1.75
3416 5209 2.938956 AGAGCTAATACCACATGGGC 57.061 50.000 2.32 0.00 42.05 5.36
3440 5233 4.286291 ACCTCGGGTATCTTGAGACTTTTT 59.714 41.667 0.00 0.00 32.11 1.94
3479 5272 0.838122 CCCCCTATACCCTGGAGCTG 60.838 65.000 0.00 0.00 0.00 4.24
3480 5273 0.191064 CCCCTATACCCTGGAGCTGA 59.809 60.000 0.00 0.00 0.00 4.26
3481 5274 1.203364 CCCCTATACCCTGGAGCTGAT 60.203 57.143 0.00 0.00 0.00 2.90
3484 5277 2.830923 CCTATACCCTGGAGCTGATCTG 59.169 54.545 0.00 0.00 0.00 2.90
3489 5282 1.525923 CTGGAGCTGATCTGGGGTG 59.474 63.158 0.00 0.00 0.00 4.61
3543 5336 4.473444 TGAGGCTTTTGATGGAACTCTTT 58.527 39.130 0.00 0.00 0.00 2.52
3587 5380 4.823442 TCATGCATCACTATGGACATTTCC 59.177 41.667 0.00 0.00 43.19 3.13
3638 5431 6.154021 GCTCCATAGGAATTGCCATTCAATAT 59.846 38.462 12.18 7.12 44.23 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.750778 GACCCATTTCATGTCCGCATT 59.249 47.619 0.00 0.00 31.99 3.56
1 2 1.392589 GACCCATTTCATGTCCGCAT 58.607 50.000 0.00 0.00 35.32 4.73
2 3 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
3 4 1.714899 CCGACCCATTTCATGTCCGC 61.715 60.000 0.00 0.00 0.00 5.54
4 5 1.714899 GCCGACCCATTTCATGTCCG 61.715 60.000 0.00 0.00 0.00 4.79
5 6 1.714899 CGCCGACCCATTTCATGTCC 61.715 60.000 0.00 0.00 0.00 4.02
6 7 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
7 8 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
9 10 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
10 11 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
11 12 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
12 13 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
33 34 4.700365 GTTGGGTCGGCAAAGCGC 62.700 66.667 0.00 0.00 41.28 5.92
34 35 2.978010 AGTTGGGTCGGCAAAGCG 60.978 61.111 0.00 0.00 0.00 4.68
35 36 2.644992 CAGTTGGGTCGGCAAAGC 59.355 61.111 0.00 0.00 0.00 3.51
36 37 1.733402 TTGCAGTTGGGTCGGCAAAG 61.733 55.000 0.00 0.00 43.04 2.77
37 38 1.754621 TTGCAGTTGGGTCGGCAAA 60.755 52.632 0.00 0.00 43.04 3.68
38 39 1.323271 TTTTGCAGTTGGGTCGGCAA 61.323 50.000 0.00 0.00 43.92 4.52
39 40 1.754621 TTTTGCAGTTGGGTCGGCA 60.755 52.632 0.00 0.00 36.82 5.69
40 41 1.299850 GTTTTGCAGTTGGGTCGGC 60.300 57.895 0.00 0.00 0.00 5.54
41 42 0.030638 CAGTTTTGCAGTTGGGTCGG 59.969 55.000 0.00 0.00 0.00 4.79
42 43 0.030638 CCAGTTTTGCAGTTGGGTCG 59.969 55.000 0.00 0.00 0.00 4.79
43 44 0.389025 CCCAGTTTTGCAGTTGGGTC 59.611 55.000 15.09 0.00 44.27 4.46
44 45 2.515288 CCCAGTTTTGCAGTTGGGT 58.485 52.632 15.09 0.00 44.27 4.51
46 47 1.300080 CGCCCAGTTTTGCAGTTGG 60.300 57.895 0.00 0.00 0.00 3.77
47 48 1.300080 CCGCCCAGTTTTGCAGTTG 60.300 57.895 0.00 0.00 0.00 3.16
48 49 1.454847 TCCGCCCAGTTTTGCAGTT 60.455 52.632 0.00 0.00 0.00 3.16
49 50 2.193536 GTCCGCCCAGTTTTGCAGT 61.194 57.895 0.00 0.00 0.00 4.40
50 51 2.644992 GTCCGCCCAGTTTTGCAG 59.355 61.111 0.00 0.00 0.00 4.41
51 52 3.283684 CGTCCGCCCAGTTTTGCA 61.284 61.111 0.00 0.00 0.00 4.08
52 53 4.700365 GCGTCCGCCCAGTTTTGC 62.700 66.667 0.00 0.00 34.56 3.68
79 80 4.958897 TTGTCCGTTTGGGGCGGG 62.959 66.667 3.86 0.00 46.34 6.13
80 81 2.017559 TTTTTGTCCGTTTGGGGCGG 62.018 55.000 0.00 0.00 46.34 6.13
81 82 1.437986 TTTTTGTCCGTTTGGGGCG 59.562 52.632 0.00 0.00 46.34 6.13
96 97 0.937231 CGGCGCATTTGTCCGTTTTT 60.937 50.000 10.83 0.00 38.47 1.94
97 98 1.371145 CGGCGCATTTGTCCGTTTT 60.371 52.632 10.83 0.00 38.47 2.43
98 99 2.254051 CGGCGCATTTGTCCGTTT 59.746 55.556 10.83 0.00 38.47 3.60
102 103 4.160635 CGGACGGCGCATTTGTCC 62.161 66.667 22.73 22.73 46.91 4.02
103 104 2.452366 AAACGGACGGCGCATTTGTC 62.452 55.000 10.83 11.19 0.00 3.18
104 105 2.548295 AAACGGACGGCGCATTTGT 61.548 52.632 10.83 0.74 0.00 2.83
105 106 2.080062 CAAACGGACGGCGCATTTG 61.080 57.895 10.83 9.01 0.00 2.32
106 107 2.254051 CAAACGGACGGCGCATTT 59.746 55.556 10.83 0.00 0.00 2.32
107 108 3.732892 CCAAACGGACGGCGCATT 61.733 61.111 10.83 0.00 0.00 3.56
115 116 2.741211 GGAGCGACCCAAACGGAC 60.741 66.667 0.00 0.00 34.64 4.79
116 117 2.119484 AATGGAGCGACCCAAACGGA 62.119 55.000 0.29 0.00 40.04 4.69
117 118 1.674322 AATGGAGCGACCCAAACGG 60.674 57.895 0.29 0.00 40.04 4.44
118 119 1.501741 CAATGGAGCGACCCAAACG 59.498 57.895 0.29 0.00 40.04 3.60
119 120 0.608035 TCCAATGGAGCGACCCAAAC 60.608 55.000 0.00 0.00 40.04 2.93
120 121 0.322456 CTCCAATGGAGCGACCCAAA 60.322 55.000 17.25 0.00 43.29 3.28
121 122 1.299648 CTCCAATGGAGCGACCCAA 59.700 57.895 17.25 0.00 43.29 4.12
122 123 2.989639 CTCCAATGGAGCGACCCA 59.010 61.111 17.25 0.00 43.29 4.51
143 144 4.640789 ATCACACTACTCGGCTTTAGAG 57.359 45.455 0.00 0.00 41.27 2.43
144 145 4.945543 TGTATCACACTACTCGGCTTTAGA 59.054 41.667 0.00 0.00 0.00 2.10
145 146 5.244785 TGTATCACACTACTCGGCTTTAG 57.755 43.478 0.00 0.00 0.00 1.85
146 147 5.184479 ACTTGTATCACACTACTCGGCTTTA 59.816 40.000 0.00 0.00 0.00 1.85
147 148 4.021368 ACTTGTATCACACTACTCGGCTTT 60.021 41.667 0.00 0.00 0.00 3.51
148 149 3.510360 ACTTGTATCACACTACTCGGCTT 59.490 43.478 0.00 0.00 0.00 4.35
149 150 3.090037 ACTTGTATCACACTACTCGGCT 58.910 45.455 0.00 0.00 0.00 5.52
150 151 3.505464 ACTTGTATCACACTACTCGGC 57.495 47.619 0.00 0.00 0.00 5.54
151 152 7.928103 AGTTATACTTGTATCACACTACTCGG 58.072 38.462 7.54 0.00 0.00 4.63
155 156 9.947669 CCACTAGTTATACTTGTATCACACTAC 57.052 37.037 0.00 0.00 32.65 2.73
156 157 8.627403 GCCACTAGTTATACTTGTATCACACTA 58.373 37.037 0.00 7.22 32.65 2.74
157 158 7.123697 TGCCACTAGTTATACTTGTATCACACT 59.876 37.037 0.00 6.63 32.65 3.55
158 159 7.262772 TGCCACTAGTTATACTTGTATCACAC 58.737 38.462 0.00 0.85 32.65 3.82
159 160 7.340999 TCTGCCACTAGTTATACTTGTATCACA 59.659 37.037 0.00 0.00 32.65 3.58
160 161 7.713750 TCTGCCACTAGTTATACTTGTATCAC 58.286 38.462 0.00 0.00 32.65 3.06
161 162 7.891498 TCTGCCACTAGTTATACTTGTATCA 57.109 36.000 0.00 0.00 32.65 2.15
162 163 9.595823 TTTTCTGCCACTAGTTATACTTGTATC 57.404 33.333 0.00 0.00 32.65 2.24
163 164 9.601217 CTTTTCTGCCACTAGTTATACTTGTAT 57.399 33.333 0.00 0.00 32.65 2.29
164 165 8.591072 ACTTTTCTGCCACTAGTTATACTTGTA 58.409 33.333 0.00 0.00 32.65 2.41
165 166 7.450903 ACTTTTCTGCCACTAGTTATACTTGT 58.549 34.615 0.00 0.00 34.63 3.16
166 167 7.907214 ACTTTTCTGCCACTAGTTATACTTG 57.093 36.000 0.00 0.00 0.00 3.16
168 169 9.433153 GTTAACTTTTCTGCCACTAGTTATACT 57.567 33.333 0.00 0.00 32.97 2.12
169 170 9.433153 AGTTAACTTTTCTGCCACTAGTTATAC 57.567 33.333 1.12 0.00 32.97 1.47
171 172 8.919777 AAGTTAACTTTTCTGCCACTAGTTAT 57.080 30.769 15.22 0.00 32.97 1.89
172 173 8.208903 AGAAGTTAACTTTTCTGCCACTAGTTA 58.791 33.333 21.40 0.00 36.11 2.24
173 174 7.054751 AGAAGTTAACTTTTCTGCCACTAGTT 58.945 34.615 21.40 0.00 36.11 2.24
174 175 6.592870 AGAAGTTAACTTTTCTGCCACTAGT 58.407 36.000 21.40 0.00 36.11 2.57
175 176 7.497925 AAGAAGTTAACTTTTCTGCCACTAG 57.502 36.000 21.40 0.00 36.11 2.57
176 177 7.875327 AAAGAAGTTAACTTTTCTGCCACTA 57.125 32.000 21.40 0.00 36.11 2.74
177 178 6.775594 AAAGAAGTTAACTTTTCTGCCACT 57.224 33.333 21.40 8.89 36.11 4.00
178 179 7.674008 GCAAAAAGAAGTTAACTTTTCTGCCAC 60.674 37.037 21.40 6.79 43.67 5.01
179 180 6.312672 GCAAAAAGAAGTTAACTTTTCTGCCA 59.687 34.615 21.40 0.00 43.67 4.92
180 181 6.507929 CGCAAAAAGAAGTTAACTTTTCTGCC 60.508 38.462 21.40 8.16 43.67 4.85
181 182 6.402816 CGCAAAAAGAAGTTAACTTTTCTGC 58.597 36.000 21.40 18.34 43.67 4.26
182 183 6.019881 CCCGCAAAAAGAAGTTAACTTTTCTG 60.020 38.462 21.40 11.17 43.67 3.02
183 184 6.040247 CCCGCAAAAAGAAGTTAACTTTTCT 58.960 36.000 21.40 12.58 43.67 2.52
184 185 5.233476 CCCCGCAAAAAGAAGTTAACTTTTC 59.767 40.000 21.40 10.46 43.67 2.29
185 186 5.113383 CCCCGCAAAAAGAAGTTAACTTTT 58.887 37.500 21.40 13.65 45.48 2.27
186 187 4.442332 CCCCCGCAAAAAGAAGTTAACTTT 60.442 41.667 21.40 9.30 38.91 2.66
187 188 3.069016 CCCCCGCAAAAAGAAGTTAACTT 59.931 43.478 20.67 20.67 39.23 2.66
188 189 2.626266 CCCCCGCAAAAAGAAGTTAACT 59.374 45.455 1.12 1.12 0.00 2.24
189 190 2.624364 TCCCCCGCAAAAAGAAGTTAAC 59.376 45.455 0.00 0.00 0.00 2.01
190 191 2.624364 GTCCCCCGCAAAAAGAAGTTAA 59.376 45.455 0.00 0.00 0.00 2.01
191 192 2.232399 GTCCCCCGCAAAAAGAAGTTA 58.768 47.619 0.00 0.00 0.00 2.24
192 193 1.037493 GTCCCCCGCAAAAAGAAGTT 58.963 50.000 0.00 0.00 0.00 2.66
193 194 0.106419 TGTCCCCCGCAAAAAGAAGT 60.106 50.000 0.00 0.00 0.00 3.01
194 195 0.598065 CTGTCCCCCGCAAAAAGAAG 59.402 55.000 0.00 0.00 0.00 2.85
195 196 0.183971 TCTGTCCCCCGCAAAAAGAA 59.816 50.000 0.00 0.00 0.00 2.52
196 197 0.183971 TTCTGTCCCCCGCAAAAAGA 59.816 50.000 0.00 0.00 0.00 2.52
197 198 1.036707 TTTCTGTCCCCCGCAAAAAG 58.963 50.000 0.00 0.00 0.00 2.27
198 199 1.342819 CATTTCTGTCCCCCGCAAAAA 59.657 47.619 0.00 0.00 0.00 1.94
199 200 0.965439 CATTTCTGTCCCCCGCAAAA 59.035 50.000 0.00 0.00 0.00 2.44
200 201 0.178975 ACATTTCTGTCCCCCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
201 202 0.178975 AACATTTCTGTCCCCCGCAA 60.179 50.000 0.00 0.00 33.36 4.85
202 203 0.693622 TAACATTTCTGTCCCCCGCA 59.306 50.000 0.00 0.00 33.36 5.69
203 204 2.052782 ATAACATTTCTGTCCCCCGC 57.947 50.000 0.00 0.00 33.36 6.13
204 205 6.518208 TTTTAATAACATTTCTGTCCCCCG 57.482 37.500 0.00 0.00 33.36 5.73
205 206 8.318412 ACAATTTTAATAACATTTCTGTCCCCC 58.682 33.333 0.00 0.00 33.36 5.40
206 207 9.150348 CACAATTTTAATAACATTTCTGTCCCC 57.850 33.333 0.00 0.00 33.36 4.81
207 208 9.705290 ACACAATTTTAATAACATTTCTGTCCC 57.295 29.630 0.00 0.00 33.36 4.46
221 222 7.750458 CGCAGTAACTGATGACACAATTTTAAT 59.250 33.333 0.00 0.00 32.44 1.40
222 223 7.075121 CGCAGTAACTGATGACACAATTTTAA 58.925 34.615 0.00 0.00 32.44 1.52
223 224 6.203915 ACGCAGTAACTGATGACACAATTTTA 59.796 34.615 0.00 0.00 41.94 1.52
224 225 5.008613 ACGCAGTAACTGATGACACAATTTT 59.991 36.000 0.00 0.00 41.94 1.82
225 226 4.515191 ACGCAGTAACTGATGACACAATTT 59.485 37.500 0.00 0.00 41.94 1.82
226 227 4.065088 ACGCAGTAACTGATGACACAATT 58.935 39.130 0.00 0.00 41.94 2.32
227 228 3.664107 ACGCAGTAACTGATGACACAAT 58.336 40.909 0.00 0.00 41.94 2.71
228 229 3.106242 ACGCAGTAACTGATGACACAA 57.894 42.857 0.00 0.00 41.94 3.33
229 230 2.812358 ACGCAGTAACTGATGACACA 57.188 45.000 0.00 0.00 41.94 3.72
243 244 6.908820 TGAGTAAAATATACTGTACGACGCAG 59.091 38.462 0.00 0.00 39.67 5.18
244 245 6.688385 GTGAGTAAAATATACTGTACGACGCA 59.312 38.462 0.00 0.00 0.00 5.24
245 246 6.141369 GGTGAGTAAAATATACTGTACGACGC 59.859 42.308 0.00 0.00 0.00 5.19
246 247 6.355405 CGGTGAGTAAAATATACTGTACGACG 59.645 42.308 0.00 0.00 0.00 5.12
247 248 6.634436 CCGGTGAGTAAAATATACTGTACGAC 59.366 42.308 0.00 0.00 0.00 4.34
248 249 6.318648 ACCGGTGAGTAAAATATACTGTACGA 59.681 38.462 6.12 0.00 0.00 3.43
249 250 6.498304 ACCGGTGAGTAAAATATACTGTACG 58.502 40.000 6.12 0.00 0.00 3.67
250 251 7.483307 TGACCGGTGAGTAAAATATACTGTAC 58.517 38.462 14.63 0.00 0.00 2.90
251 252 7.643569 TGACCGGTGAGTAAAATATACTGTA 57.356 36.000 14.63 0.00 0.00 2.74
252 253 6.534475 TGACCGGTGAGTAAAATATACTGT 57.466 37.500 14.63 0.00 0.00 3.55
253 254 7.837202 TTTGACCGGTGAGTAAAATATACTG 57.163 36.000 14.63 0.00 0.00 2.74
254 255 8.483758 AGATTTGACCGGTGAGTAAAATATACT 58.516 33.333 14.63 1.66 32.00 2.12
255 256 8.548721 CAGATTTGACCGGTGAGTAAAATATAC 58.451 37.037 14.63 0.00 32.00 1.47
256 257 8.479689 TCAGATTTGACCGGTGAGTAAAATATA 58.520 33.333 14.63 0.00 32.00 0.86
257 258 7.335627 TCAGATTTGACCGGTGAGTAAAATAT 58.664 34.615 14.63 4.78 32.00 1.28
258 259 6.703319 TCAGATTTGACCGGTGAGTAAAATA 58.297 36.000 14.63 0.00 32.00 1.40
259 260 5.556915 TCAGATTTGACCGGTGAGTAAAAT 58.443 37.500 14.63 10.04 34.13 1.82
260 261 4.963373 TCAGATTTGACCGGTGAGTAAAA 58.037 39.130 14.63 5.09 0.00 1.52
261 262 4.610605 TCAGATTTGACCGGTGAGTAAA 57.389 40.909 14.63 8.64 0.00 2.01
262 263 4.610605 TTCAGATTTGACCGGTGAGTAA 57.389 40.909 14.63 0.00 31.71 2.24
263 264 4.039973 AGTTTCAGATTTGACCGGTGAGTA 59.960 41.667 14.63 0.00 31.71 2.59
264 265 3.139077 GTTTCAGATTTGACCGGTGAGT 58.861 45.455 14.63 0.00 31.71 3.41
265 266 3.403038 AGTTTCAGATTTGACCGGTGAG 58.597 45.455 14.63 0.00 31.71 3.51
266 267 3.485463 AGTTTCAGATTTGACCGGTGA 57.515 42.857 14.63 0.00 31.71 4.02
267 268 4.389077 GTCTAGTTTCAGATTTGACCGGTG 59.611 45.833 14.63 0.00 31.71 4.94
268 269 4.566987 GTCTAGTTTCAGATTTGACCGGT 58.433 43.478 6.92 6.92 31.71 5.28
269 270 3.612860 CGTCTAGTTTCAGATTTGACCGG 59.387 47.826 0.00 0.00 31.71 5.28
270 271 4.482386 TCGTCTAGTTTCAGATTTGACCG 58.518 43.478 0.00 0.00 31.71 4.79
271 272 4.865365 CCTCGTCTAGTTTCAGATTTGACC 59.135 45.833 0.00 0.00 31.71 4.02
272 273 4.865365 CCCTCGTCTAGTTTCAGATTTGAC 59.135 45.833 0.00 0.00 31.71 3.18
273 274 4.770531 TCCCTCGTCTAGTTTCAGATTTGA 59.229 41.667 0.00 0.00 0.00 2.69
274 275 5.073311 TCCCTCGTCTAGTTTCAGATTTG 57.927 43.478 0.00 0.00 0.00 2.32
275 276 5.017490 TCTCCCTCGTCTAGTTTCAGATTT 58.983 41.667 0.00 0.00 0.00 2.17
276 277 4.601084 TCTCCCTCGTCTAGTTTCAGATT 58.399 43.478 0.00 0.00 0.00 2.40
277 278 4.204012 CTCTCCCTCGTCTAGTTTCAGAT 58.796 47.826 0.00 0.00 0.00 2.90
278 279 3.009253 ACTCTCCCTCGTCTAGTTTCAGA 59.991 47.826 0.00 0.00 0.00 3.27
279 280 3.349022 ACTCTCCCTCGTCTAGTTTCAG 58.651 50.000 0.00 0.00 0.00 3.02
280 281 3.436577 ACTCTCCCTCGTCTAGTTTCA 57.563 47.619 0.00 0.00 0.00 2.69
281 282 3.627123 GGTACTCTCCCTCGTCTAGTTTC 59.373 52.174 0.00 0.00 0.00 2.78
282 283 3.619419 GGTACTCTCCCTCGTCTAGTTT 58.381 50.000 0.00 0.00 0.00 2.66
283 284 2.419851 CGGTACTCTCCCTCGTCTAGTT 60.420 54.545 0.00 0.00 0.00 2.24
284 285 1.138661 CGGTACTCTCCCTCGTCTAGT 59.861 57.143 0.00 0.00 0.00 2.57
285 286 1.868469 CGGTACTCTCCCTCGTCTAG 58.132 60.000 0.00 0.00 0.00 2.43
286 287 0.179062 GCGGTACTCTCCCTCGTCTA 60.179 60.000 0.00 0.00 0.00 2.59
287 288 1.451747 GCGGTACTCTCCCTCGTCT 60.452 63.158 0.00 0.00 0.00 4.18
288 289 1.310933 TTGCGGTACTCTCCCTCGTC 61.311 60.000 0.00 0.00 0.00 4.20
289 290 1.303888 TTGCGGTACTCTCCCTCGT 60.304 57.895 0.00 0.00 0.00 4.18
290 291 1.139095 GTTGCGGTACTCTCCCTCG 59.861 63.158 0.00 0.00 0.00 4.63
291 292 0.173708 CAGTTGCGGTACTCTCCCTC 59.826 60.000 0.00 0.00 0.00 4.30
292 293 1.258445 CCAGTTGCGGTACTCTCCCT 61.258 60.000 0.00 0.00 0.00 4.20
293 294 1.218316 CCAGTTGCGGTACTCTCCC 59.782 63.158 0.00 0.00 0.00 4.30
294 295 0.389948 CACCAGTTGCGGTACTCTCC 60.390 60.000 0.00 0.00 37.07 3.71
295 296 1.014564 GCACCAGTTGCGGTACTCTC 61.015 60.000 0.00 0.00 42.79 3.20
296 297 1.004918 GCACCAGTTGCGGTACTCT 60.005 57.895 0.00 0.00 42.79 3.24
297 298 3.562635 GCACCAGTTGCGGTACTC 58.437 61.111 0.00 0.00 42.79 2.59
305 306 2.756207 TCATCCATCAATGCACCAGTTG 59.244 45.455 0.00 0.00 0.00 3.16
306 307 3.090210 TCATCCATCAATGCACCAGTT 57.910 42.857 0.00 0.00 0.00 3.16
307 308 2.812836 TCATCCATCAATGCACCAGT 57.187 45.000 0.00 0.00 0.00 4.00
308 309 3.284617 TCTTCATCCATCAATGCACCAG 58.715 45.455 0.00 0.00 0.00 4.00
309 310 3.369242 TCTTCATCCATCAATGCACCA 57.631 42.857 0.00 0.00 0.00 4.17
310 311 3.698040 ACTTCTTCATCCATCAATGCACC 59.302 43.478 0.00 0.00 0.00 5.01
311 312 4.978083 ACTTCTTCATCCATCAATGCAC 57.022 40.909 0.00 0.00 0.00 4.57
312 313 6.433716 TGTTAACTTCTTCATCCATCAATGCA 59.566 34.615 7.22 0.00 0.00 3.96
313 314 6.855836 TGTTAACTTCTTCATCCATCAATGC 58.144 36.000 7.22 0.00 0.00 3.56
316 317 9.513906 TGTATTGTTAACTTCTTCATCCATCAA 57.486 29.630 7.22 0.00 0.00 2.57
317 318 8.946085 GTGTATTGTTAACTTCTTCATCCATCA 58.054 33.333 7.22 0.00 0.00 3.07
318 319 8.398665 GGTGTATTGTTAACTTCTTCATCCATC 58.601 37.037 7.22 0.00 0.00 3.51
319 320 7.339466 GGGTGTATTGTTAACTTCTTCATCCAT 59.661 37.037 7.22 0.00 0.00 3.41
320 321 6.657541 GGGTGTATTGTTAACTTCTTCATCCA 59.342 38.462 7.22 0.00 0.00 3.41
321 322 6.884836 AGGGTGTATTGTTAACTTCTTCATCC 59.115 38.462 7.22 9.23 0.00 3.51
322 323 7.923414 AGGGTGTATTGTTAACTTCTTCATC 57.077 36.000 7.22 1.00 0.00 2.92
323 324 9.614792 GATAGGGTGTATTGTTAACTTCTTCAT 57.385 33.333 7.22 0.00 0.00 2.57
324 325 7.762615 CGATAGGGTGTATTGTTAACTTCTTCA 59.237 37.037 7.22 0.00 0.00 3.02
325 326 8.128016 CGATAGGGTGTATTGTTAACTTCTTC 57.872 38.462 7.22 0.00 0.00 2.87
345 346 9.398170 CAGCCATTTATTATTTTTGACCGATAG 57.602 33.333 0.00 0.00 0.00 2.08
346 347 8.356657 CCAGCCATTTATTATTTTTGACCGATA 58.643 33.333 0.00 0.00 0.00 2.92
347 348 7.147742 ACCAGCCATTTATTATTTTTGACCGAT 60.148 33.333 0.00 0.00 0.00 4.18
348 349 6.153680 ACCAGCCATTTATTATTTTTGACCGA 59.846 34.615 0.00 0.00 0.00 4.69
349 350 6.255453 CACCAGCCATTTATTATTTTTGACCG 59.745 38.462 0.00 0.00 0.00 4.79
350 351 7.102993 ACACCAGCCATTTATTATTTTTGACC 58.897 34.615 0.00 0.00 0.00 4.02
351 352 9.816354 ATACACCAGCCATTTATTATTTTTGAC 57.184 29.630 0.00 0.00 0.00 3.18
360 361 8.846211 GTGTATACAATACACCAGCCATTTATT 58.154 33.333 16.02 0.00 41.27 1.40
361 362 7.996066 TGTGTATACAATACACCAGCCATTTAT 59.004 33.333 21.42 0.00 45.18 1.40
362 363 7.281324 GTGTGTATACAATACACCAGCCATTTA 59.719 37.037 21.42 3.43 45.18 1.40
363 364 6.094881 GTGTGTATACAATACACCAGCCATTT 59.905 38.462 21.42 0.00 45.18 2.32
364 365 5.588648 GTGTGTATACAATACACCAGCCATT 59.411 40.000 21.42 0.00 45.18 3.16
365 366 5.123227 GTGTGTATACAATACACCAGCCAT 58.877 41.667 21.42 0.00 45.18 4.40
366 367 4.509616 GTGTGTATACAATACACCAGCCA 58.490 43.478 21.42 5.75 45.18 4.75
367 368 3.554324 CGTGTGTATACAATACACCAGCC 59.446 47.826 21.42 10.12 44.85 4.85
368 369 4.426416 TCGTGTGTATACAATACACCAGC 58.574 43.478 21.42 13.37 44.85 4.85
369 370 5.051039 GCATCGTGTGTATACAATACACCAG 60.051 44.000 21.42 16.44 44.85 4.00
370 371 4.806775 GCATCGTGTGTATACAATACACCA 59.193 41.667 21.42 1.09 44.85 4.17
371 372 4.806775 TGCATCGTGTGTATACAATACACC 59.193 41.667 21.42 14.17 44.85 4.16
372 373 5.959652 TGCATCGTGTGTATACAATACAC 57.040 39.130 18.81 18.81 44.38 2.90
373 374 8.825667 ATATTGCATCGTGTGTATACAATACA 57.174 30.769 7.25 0.00 38.82 2.29
375 376 9.068008 CGTATATTGCATCGTGTGTATACAATA 57.932 33.333 7.25 0.00 38.82 1.90
376 377 7.411480 GCGTATATTGCATCGTGTGTATACAAT 60.411 37.037 7.25 0.00 38.82 2.71
377 378 6.129035 GCGTATATTGCATCGTGTGTATACAA 60.129 38.462 7.25 0.00 38.82 2.41
386 387 5.391449 AGTACTAGCGTATATTGCATCGTG 58.609 41.667 0.00 0.00 33.85 4.35
456 466 3.353836 CGCCAAACTCACGTGGGG 61.354 66.667 21.67 13.64 40.92 4.96
522 532 9.364989 TGATTTCTTTCAAGTGTGGTTTTAAAG 57.635 29.630 0.00 0.00 0.00 1.85
523 533 9.712305 TTGATTTCTTTCAAGTGTGGTTTTAAA 57.288 25.926 0.00 0.00 32.07 1.52
524 534 9.712305 TTTGATTTCTTTCAAGTGTGGTTTTAA 57.288 25.926 0.00 0.00 36.97 1.52
525 535 9.883142 ATTTGATTTCTTTCAAGTGTGGTTTTA 57.117 25.926 0.00 0.00 36.97 1.52
526 536 8.667463 CATTTGATTTCTTTCAAGTGTGGTTTT 58.333 29.630 2.60 0.00 38.09 2.43
740 759 4.467084 GGATCCGGAGCCAACGCA 62.467 66.667 33.57 0.00 36.74 5.24
1021 1041 2.484928 CCGAGATGCGAGCAGAGGA 61.485 63.158 3.58 0.00 44.57 3.71
1022 1042 1.804396 ATCCGAGATGCGAGCAGAGG 61.804 60.000 3.58 4.51 44.57 3.69
1023 1043 0.387112 GATCCGAGATGCGAGCAGAG 60.387 60.000 3.58 0.00 44.57 3.35
1024 1044 1.656998 GATCCGAGATGCGAGCAGA 59.343 57.895 3.58 0.00 44.57 4.26
1052 1072 0.531753 GCCGAAAGCCTCAGATCCTC 60.532 60.000 0.00 0.00 34.35 3.71
1160 1180 3.721706 CGGCTGGAAGAAGGGCCT 61.722 66.667 0.00 0.00 42.13 5.19
1442 1462 2.028567 GTGACTCCACTCCAAGAAGAGG 60.029 54.545 0.00 0.00 40.10 3.69
1450 1470 4.820173 CGTATACTATGTGACTCCACTCCA 59.180 45.833 0.56 0.00 43.55 3.86
1451 1471 5.061853 TCGTATACTATGTGACTCCACTCC 58.938 45.833 0.56 0.00 43.55 3.85
1452 1472 5.990386 TCTCGTATACTATGTGACTCCACTC 59.010 44.000 0.56 0.00 43.55 3.51
1453 1473 5.759273 GTCTCGTATACTATGTGACTCCACT 59.241 44.000 0.56 0.00 43.55 4.00
1454 1474 5.333187 CGTCTCGTATACTATGTGACTCCAC 60.333 48.000 0.56 0.00 43.46 4.02
1475 1501 1.865340 GGAGACCAGTCAAACAACGTC 59.135 52.381 0.00 0.00 0.00 4.34
1534 1560 0.739813 CGTCAATGTCCTTCCCCGTC 60.740 60.000 0.00 0.00 0.00 4.79
1970 1998 5.995282 TCAGTACAACGGATCAAACTCAAAT 59.005 36.000 0.00 0.00 0.00 2.32
2418 2471 0.319383 CCGCCTGCTCAGTATGCTAG 60.319 60.000 0.00 0.00 34.76 3.42
2603 2659 5.374071 ACTAAACCCTTGAGAAAACGACAT 58.626 37.500 0.00 0.00 0.00 3.06
2607 2663 6.088616 CGTAGTACTAAACCCTTGAGAAAACG 59.911 42.308 3.61 0.00 0.00 3.60
2724 2783 3.559171 GGAGGGAACAGAAGCATACACAA 60.559 47.826 0.00 0.00 0.00 3.33
2738 2797 5.183228 TCAATAAATTCAGACGGAGGGAAC 58.817 41.667 0.00 0.00 0.00 3.62
2801 2894 0.639756 GCAACGCAACACACAAACAG 59.360 50.000 0.00 0.00 0.00 3.16
2836 2929 1.137404 GTAGGGTTGCTGCAATGCG 59.863 57.895 19.11 0.00 35.36 4.73
2845 2938 8.904099 ATATTAAACTATGTGAGTAGGGTTGC 57.096 34.615 0.00 0.00 37.44 4.17
2851 2944 7.542477 CGGGCTGATATTAAACTATGTGAGTAG 59.458 40.741 0.00 0.00 37.44 2.57
2852 2945 7.231925 TCGGGCTGATATTAAACTATGTGAGTA 59.768 37.037 0.00 0.00 37.44 2.59
2853 2946 6.041637 TCGGGCTGATATTAAACTATGTGAGT 59.958 38.462 0.00 0.00 41.56 3.41
2854 2947 6.455647 TCGGGCTGATATTAAACTATGTGAG 58.544 40.000 0.00 0.00 0.00 3.51
2855 2948 6.413783 TCGGGCTGATATTAAACTATGTGA 57.586 37.500 0.00 0.00 0.00 3.58
2856 2949 6.035005 CGATCGGGCTGATATTAAACTATGTG 59.965 42.308 9.22 0.00 37.47 3.21
2863 2956 4.594123 TGTCGATCGGGCTGATATTAAA 57.406 40.909 16.41 0.00 37.47 1.52
2880 2973 9.580916 CTCATAAAATTGACGGTTATTATGTCG 57.419 33.333 0.00 0.00 35.40 4.35
2895 2988 4.497006 CGCTGGCCTTCTCTCATAAAATTG 60.497 45.833 3.32 0.00 0.00 2.32
2903 3004 2.659016 CACGCTGGCCTTCTCTCA 59.341 61.111 3.32 0.00 0.00 3.27
2904 3005 2.125350 CCACGCTGGCCTTCTCTC 60.125 66.667 3.32 0.00 0.00 3.20
2919 3020 1.456518 CGGAGAGAGGAGATGGCCA 60.457 63.158 8.56 8.56 0.00 5.36
2928 3029 1.751351 TGCACTATTGACGGAGAGAGG 59.249 52.381 0.00 0.00 0.00 3.69
2933 3034 2.094494 ACAGTCTGCACTATTGACGGAG 60.094 50.000 9.53 2.26 36.01 4.63
2936 3037 3.317150 TCAACAGTCTGCACTATTGACG 58.683 45.455 0.00 0.00 40.46 4.35
2937 3038 4.692625 ACATCAACAGTCTGCACTATTGAC 59.307 41.667 0.58 0.00 46.46 3.18
2939 3040 4.692155 TGACATCAACAGTCTGCACTATTG 59.308 41.667 0.00 0.00 38.25 1.90
2940 3041 4.898320 TGACATCAACAGTCTGCACTATT 58.102 39.130 0.00 0.00 36.94 1.73
2941 3042 4.541973 TGACATCAACAGTCTGCACTAT 57.458 40.909 0.00 0.00 36.94 2.12
2942 3043 4.248058 CATGACATCAACAGTCTGCACTA 58.752 43.478 0.00 0.00 36.94 2.74
2943 3044 2.916702 TGACATCAACAGTCTGCACT 57.083 45.000 0.00 0.00 36.94 4.40
2944 3045 2.161012 CCATGACATCAACAGTCTGCAC 59.839 50.000 0.00 0.00 36.94 4.57
2946 3047 1.131883 GCCATGACATCAACAGTCTGC 59.868 52.381 0.00 0.00 36.94 4.26
2948 3049 2.430465 GTGCCATGACATCAACAGTCT 58.570 47.619 0.00 0.00 36.94 3.24
2949 3050 1.470098 GGTGCCATGACATCAACAGTC 59.530 52.381 0.00 0.00 36.55 3.51
2950 3051 1.538047 GGTGCCATGACATCAACAGT 58.462 50.000 0.00 0.00 0.00 3.55
2951 3052 0.448990 CGGTGCCATGACATCAACAG 59.551 55.000 0.00 0.00 0.00 3.16
2952 3053 0.959867 CCGGTGCCATGACATCAACA 60.960 55.000 0.00 0.00 0.00 3.33
2953 3054 1.656818 CCCGGTGCCATGACATCAAC 61.657 60.000 0.00 0.00 0.00 3.18
2960 3061 2.982643 ATGCTTCCCGGTGCCATGA 61.983 57.895 0.00 0.00 0.00 3.07
2987 3088 2.471255 GCACATAGCAGACCACCAC 58.529 57.895 0.00 0.00 44.79 4.16
3008 3109 3.892284 TGATGTTAATGGCCACGGTAAT 58.108 40.909 8.16 0.00 0.00 1.89
3021 3122 4.474394 TGTGGTGGGAAACATGATGTTAA 58.526 39.130 11.70 0.00 40.14 2.01
3022 3123 4.105754 TGTGGTGGGAAACATGATGTTA 57.894 40.909 11.70 0.00 40.14 2.41
3023 3124 2.956132 TGTGGTGGGAAACATGATGTT 58.044 42.857 4.72 4.72 43.41 2.71
3024 3125 2.673775 TGTGGTGGGAAACATGATGT 57.326 45.000 0.00 0.00 0.00 3.06
3048 3149 4.577677 TTGCTGCCAGGCAACGGA 62.578 61.111 17.03 2.67 45.64 4.69
3064 3165 3.372822 CCGACAACATATTTGTAGCCGTT 59.627 43.478 4.07 0.00 34.06 4.44
3065 3166 2.933906 CCGACAACATATTTGTAGCCGT 59.066 45.455 4.07 0.00 34.06 5.68
3076 3177 4.312052 GGCCAAGCCGACAACATA 57.688 55.556 0.00 0.00 39.62 2.29
3086 3187 1.448985 TGTGAGTTATTCGGCCAAGC 58.551 50.000 2.24 0.00 0.00 4.01
3135 4899 0.112995 ATCCGGGCATGGCAATATGT 59.887 50.000 22.06 0.00 0.00 2.29
3140 4904 2.203337 GCTATCCGGGCATGGCAA 60.203 61.111 22.06 6.14 30.79 4.52
3141 4905 3.170672 AGCTATCCGGGCATGGCA 61.171 61.111 22.06 0.09 32.80 4.92
3148 4912 1.749033 GGGACAAGAGCTATCCGGG 59.251 63.158 0.00 0.00 32.90 5.73
3152 4916 1.271102 CTAGGCGGGACAAGAGCTATC 59.729 57.143 0.00 0.00 0.00 2.08
3221 4988 2.341257 CTTCAAGAGTGGACGACATGG 58.659 52.381 0.00 0.00 0.00 3.66
3249 5042 1.001503 AGGTCAGCCTCCTCCTCTG 59.998 63.158 0.00 0.00 42.67 3.35
3274 5067 1.616159 GATCCTCCTCCTTCTCCTCG 58.384 60.000 0.00 0.00 0.00 4.63
3307 5100 1.208293 GGATCTTTCTTCGTGGCCTCT 59.792 52.381 3.32 0.00 0.00 3.69
3351 5144 3.593442 TGGAGTGTGTTTTGGGATTCT 57.407 42.857 0.00 0.00 0.00 2.40
3416 5209 2.379972 AGTCTCAAGATACCCGAGGTG 58.620 52.381 5.90 0.00 36.19 4.00
3421 5214 3.939592 GGGAAAAAGTCTCAAGATACCCG 59.060 47.826 0.00 0.00 0.00 5.28
3440 5233 1.305046 GGTCTCCGAGGTTCAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
3467 5260 0.399091 CCCAGATCAGCTCCAGGGTA 60.399 60.000 0.00 0.00 35.78 3.69
3484 5277 1.212195 GTATCCCTCTTTGGACACCCC 59.788 57.143 0.00 0.00 37.20 4.95
3489 5282 4.103153 TCATCATGGTATCCCTCTTTGGAC 59.897 45.833 0.00 0.00 37.20 4.02
3510 5303 6.095860 CCATCAAAAGCCTCATGAATAAGTCA 59.904 38.462 0.00 0.00 41.67 3.41
3543 5336 6.381498 TGAAGTGTATTGGGTGGATTTAGA 57.619 37.500 0.00 0.00 0.00 2.10
3638 5431 8.743085 AAGATAAAGATATGCTTTGAGCTTCA 57.257 30.769 1.29 0.00 46.03 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.