Multiple sequence alignment - TraesCS3D01G298200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G298200 chr3D 100.000 5700 0 0 1 5700 412099818 412094119 0.000000e+00 10527
1 TraesCS3D01G298200 chr3D 89.802 353 36 0 2 354 412077506 412077858 2.420000e-123 453
2 TraesCS3D01G298200 chr3B 94.993 4773 139 46 355 5065 539102426 539097692 0.000000e+00 7398
3 TraesCS3D01G298200 chr3A 94.687 4687 141 26 441 5060 538004941 538009586 0.000000e+00 7177
4 TraesCS3D01G298200 chr3A 81.481 324 27 23 5218 5532 538009925 538010224 9.550000e-58 235
5 TraesCS3D01G298200 chr3A 100.000 64 0 0 355 418 538004885 538004948 1.000000e-22 119
6 TraesCS3D01G298200 chr5A 93.785 354 21 1 2 354 687954698 687954345 1.090000e-146 531
7 TraesCS3D01G298200 chr7D 90.368 353 33 1 2 354 120531137 120531488 4.020000e-126 462
8 TraesCS3D01G298200 chr4B 86.239 218 19 2 5 221 5841173 5840966 5.750000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G298200 chr3D 412094119 412099818 5699 True 10527.000000 10527 100.000 1 5700 1 chr3D.!!$R1 5699
1 TraesCS3D01G298200 chr3B 539097692 539102426 4734 True 7398.000000 7398 94.993 355 5065 1 chr3B.!!$R1 4710
2 TraesCS3D01G298200 chr3A 538004885 538010224 5339 False 2510.333333 7177 92.056 355 5532 3 chr3A.!!$F1 5177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.030908 CCCGCCGTCTTCATCTAGAC 59.969 60.000 0.00 0.0 40.90 2.59 F
267 268 0.317103 CGCCGTCTTCATCTAGACCG 60.317 60.000 0.00 0.0 41.18 4.79 F
280 281 0.604578 TAGACCGTAACACACTGGGC 59.395 55.000 0.00 0.0 0.00 5.36 F
298 299 0.880278 GCACCTCGTGTCAAGCTCAA 60.880 55.000 0.00 0.0 35.75 3.02 F
1577 1628 0.925558 TGCCCATCTGCCCAGAATTA 59.074 50.000 1.62 0.0 41.36 1.40 F
1595 1646 0.976641 TATCGATGCCACCTGATCCC 59.023 55.000 8.54 0.0 0.00 3.85 F
1903 1988 1.004504 GCAATTCTGATTCGGACGAGC 60.005 52.381 0.00 0.0 0.00 5.03 F
2211 2296 2.440409 AGAATTTTGACGCATGGAGCT 58.560 42.857 0.00 0.0 42.61 4.09 F
2916 3003 3.355378 CTCACCAAGGCATATTTGACCA 58.645 45.455 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 1628 0.765903 AGGGATCAGGTGGCATCGAT 60.766 55.000 5.06 5.06 0.00 3.59 R
1724 1801 1.268539 CGTCTGACAAACCAAACAGGC 60.269 52.381 8.73 0.00 43.14 4.85 R
1725 1802 2.285083 TCGTCTGACAAACCAAACAGG 58.715 47.619 8.73 0.00 45.67 4.00 R
2211 2296 3.191162 GCAAGTGCCTAATGTCATGAACA 59.809 43.478 0.00 0.00 37.40 3.18 R
3436 3524 1.379044 CATGTGGTTCAGGAGGGCC 60.379 63.158 0.00 0.00 0.00 5.80 R
3682 3770 4.541973 TTCACTGTCACTGCTATCATGT 57.458 40.909 0.00 0.00 0.00 3.21 R
3888 3976 5.957771 ATCAACTGGCTCTCTACCAATTA 57.042 39.130 0.00 0.00 36.56 1.40 R
4225 4313 1.202463 CCAGGGTCAGATAGTGCTTCG 60.202 57.143 0.00 0.00 0.00 3.79 R
4848 4937 0.759959 TGACTGGCCTACAACCGAAA 59.240 50.000 3.32 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.990959 TTTTTGTTCTTGGTTGGCCTT 57.009 38.095 3.32 0.00 35.27 4.35
64 65 5.622346 TTTTTGTTCTTGGTTGGCCTTAT 57.378 34.783 3.32 0.00 35.27 1.73
65 66 5.622346 TTTTGTTCTTGGTTGGCCTTATT 57.378 34.783 3.32 0.00 35.27 1.40
66 67 5.622346 TTTGTTCTTGGTTGGCCTTATTT 57.378 34.783 3.32 0.00 35.27 1.40
67 68 4.864704 TGTTCTTGGTTGGCCTTATTTC 57.135 40.909 3.32 0.00 35.27 2.17
68 69 4.479158 TGTTCTTGGTTGGCCTTATTTCT 58.521 39.130 3.32 0.00 35.27 2.52
69 70 4.898861 TGTTCTTGGTTGGCCTTATTTCTT 59.101 37.500 3.32 0.00 35.27 2.52
70 71 5.365314 TGTTCTTGGTTGGCCTTATTTCTTT 59.635 36.000 3.32 0.00 35.27 2.52
71 72 5.722021 TCTTGGTTGGCCTTATTTCTTTC 57.278 39.130 3.32 0.00 35.27 2.62
72 73 5.393866 TCTTGGTTGGCCTTATTTCTTTCT 58.606 37.500 3.32 0.00 35.27 2.52
73 74 6.548321 TCTTGGTTGGCCTTATTTCTTTCTA 58.452 36.000 3.32 0.00 35.27 2.10
74 75 6.659242 TCTTGGTTGGCCTTATTTCTTTCTAG 59.341 38.462 3.32 0.00 35.27 2.43
75 76 4.705023 TGGTTGGCCTTATTTCTTTCTAGC 59.295 41.667 3.32 0.00 35.27 3.42
76 77 4.098044 GGTTGGCCTTATTTCTTTCTAGCC 59.902 45.833 3.32 0.00 39.64 3.93
77 78 4.584638 TGGCCTTATTTCTTTCTAGCCA 57.415 40.909 3.32 0.00 46.39 4.75
78 79 4.270008 TGGCCTTATTTCTTTCTAGCCAC 58.730 43.478 3.32 0.00 43.87 5.01
79 80 3.632604 GGCCTTATTTCTTTCTAGCCACC 59.367 47.826 0.00 0.00 39.01 4.61
80 81 4.270008 GCCTTATTTCTTTCTAGCCACCA 58.730 43.478 0.00 0.00 0.00 4.17
81 82 4.705023 GCCTTATTTCTTTCTAGCCACCAA 59.295 41.667 0.00 0.00 0.00 3.67
82 83 5.163612 GCCTTATTTCTTTCTAGCCACCAAG 60.164 44.000 0.00 0.00 0.00 3.61
83 84 5.946377 CCTTATTTCTTTCTAGCCACCAAGT 59.054 40.000 0.00 0.00 0.00 3.16
84 85 6.094186 CCTTATTTCTTTCTAGCCACCAAGTC 59.906 42.308 0.00 0.00 0.00 3.01
85 86 3.418684 TTCTTTCTAGCCACCAAGTCC 57.581 47.619 0.00 0.00 0.00 3.85
86 87 1.275291 TCTTTCTAGCCACCAAGTCCG 59.725 52.381 0.00 0.00 0.00 4.79
87 88 1.002087 CTTTCTAGCCACCAAGTCCGT 59.998 52.381 0.00 0.00 0.00 4.69
88 89 1.927487 TTCTAGCCACCAAGTCCGTA 58.073 50.000 0.00 0.00 0.00 4.02
89 90 1.471119 TCTAGCCACCAAGTCCGTAG 58.529 55.000 0.00 0.00 0.00 3.51
90 91 1.183549 CTAGCCACCAAGTCCGTAGT 58.816 55.000 0.00 0.00 0.00 2.73
91 92 2.025981 TCTAGCCACCAAGTCCGTAGTA 60.026 50.000 0.00 0.00 0.00 1.82
92 93 1.636148 AGCCACCAAGTCCGTAGTAA 58.364 50.000 0.00 0.00 0.00 2.24
93 94 1.274447 AGCCACCAAGTCCGTAGTAAC 59.726 52.381 0.00 0.00 0.00 2.50
98 99 1.336148 CCAAGTCCGTAGTAACGCACA 60.336 52.381 0.00 0.00 42.40 4.57
99 100 2.602878 CAAGTCCGTAGTAACGCACAT 58.397 47.619 0.00 0.00 42.40 3.21
100 101 3.427909 CCAAGTCCGTAGTAACGCACATA 60.428 47.826 0.00 0.00 42.40 2.29
101 102 3.411415 AGTCCGTAGTAACGCACATAC 57.589 47.619 0.00 0.00 42.40 2.39
102 103 2.098117 AGTCCGTAGTAACGCACATACC 59.902 50.000 0.00 0.00 42.40 2.73
103 104 4.182653 AGTCCGTAGTAACGCACATACCT 61.183 47.826 0.00 0.00 42.40 3.08
104 105 5.642117 AGTCCGTAGTAACGCACATACCTT 61.642 45.833 0.00 0.00 42.40 3.50
105 106 7.065256 AGTCCGTAGTAACGCACATACCTTT 62.065 44.000 0.00 0.00 42.40 3.11
106 107 4.494597 CGTAGTAACGCACATACCTTTG 57.505 45.455 0.00 0.00 43.12 2.77
107 108 3.922240 CGTAGTAACGCACATACCTTTGT 59.078 43.478 0.00 0.00 43.12 2.83
108 109 5.094812 CGTAGTAACGCACATACCTTTGTA 58.905 41.667 0.00 0.00 43.12 2.41
109 110 5.003778 CGTAGTAACGCACATACCTTTGTAC 59.996 44.000 0.00 0.00 43.12 2.90
110 111 4.885413 AGTAACGCACATACCTTTGTACA 58.115 39.130 0.00 0.00 0.00 2.90
111 112 5.484715 AGTAACGCACATACCTTTGTACAT 58.515 37.500 0.00 0.00 0.00 2.29
112 113 4.678509 AACGCACATACCTTTGTACATG 57.321 40.909 0.00 0.00 0.00 3.21
113 114 3.670625 ACGCACATACCTTTGTACATGT 58.329 40.909 2.69 2.69 0.00 3.21
114 115 4.069304 ACGCACATACCTTTGTACATGTT 58.931 39.130 2.30 0.00 0.00 2.71
115 116 4.517453 ACGCACATACCTTTGTACATGTTT 59.483 37.500 2.30 0.00 0.00 2.83
116 117 5.086058 CGCACATACCTTTGTACATGTTTC 58.914 41.667 2.30 0.00 0.00 2.78
117 118 5.106712 CGCACATACCTTTGTACATGTTTCT 60.107 40.000 2.30 0.00 0.00 2.52
118 119 6.567701 CGCACATACCTTTGTACATGTTTCTT 60.568 38.462 2.30 0.00 0.00 2.52
119 120 6.801862 GCACATACCTTTGTACATGTTTCTTC 59.198 38.462 2.30 0.00 0.00 2.87
120 121 7.521423 GCACATACCTTTGTACATGTTTCTTCA 60.521 37.037 2.30 0.00 0.00 3.02
121 122 8.514594 CACATACCTTTGTACATGTTTCTTCAT 58.485 33.333 2.30 0.00 0.00 2.57
122 123 9.077885 ACATACCTTTGTACATGTTTCTTCATT 57.922 29.630 2.30 0.00 0.00 2.57
123 124 9.559958 CATACCTTTGTACATGTTTCTTCATTC 57.440 33.333 2.30 0.00 0.00 2.67
124 125 7.581213 ACCTTTGTACATGTTTCTTCATTCA 57.419 32.000 2.30 0.00 0.00 2.57
125 126 7.651808 ACCTTTGTACATGTTTCTTCATTCAG 58.348 34.615 2.30 0.00 0.00 3.02
126 127 7.285401 ACCTTTGTACATGTTTCTTCATTCAGT 59.715 33.333 2.30 0.00 0.00 3.41
127 128 8.137437 CCTTTGTACATGTTTCTTCATTCAGTT 58.863 33.333 2.30 0.00 0.00 3.16
128 129 8.854979 TTTGTACATGTTTCTTCATTCAGTTG 57.145 30.769 2.30 0.00 0.00 3.16
129 130 6.969366 TGTACATGTTTCTTCATTCAGTTGG 58.031 36.000 2.30 0.00 0.00 3.77
130 131 6.770303 TGTACATGTTTCTTCATTCAGTTGGA 59.230 34.615 2.30 0.00 0.00 3.53
131 132 6.323203 ACATGTTTCTTCATTCAGTTGGAG 57.677 37.500 0.00 0.00 0.00 3.86
132 133 5.242393 ACATGTTTCTTCATTCAGTTGGAGG 59.758 40.000 0.00 0.00 0.00 4.30
133 134 5.047566 TGTTTCTTCATTCAGTTGGAGGA 57.952 39.130 0.00 0.00 0.00 3.71
134 135 5.634118 TGTTTCTTCATTCAGTTGGAGGAT 58.366 37.500 0.00 0.00 0.00 3.24
135 136 6.070656 TGTTTCTTCATTCAGTTGGAGGATT 58.929 36.000 0.00 0.00 0.00 3.01
136 137 6.550854 TGTTTCTTCATTCAGTTGGAGGATTT 59.449 34.615 0.00 0.00 0.00 2.17
137 138 6.579666 TTCTTCATTCAGTTGGAGGATTTG 57.420 37.500 0.00 0.00 0.00 2.32
138 139 5.634118 TCTTCATTCAGTTGGAGGATTTGT 58.366 37.500 0.00 0.00 0.00 2.83
139 140 6.778821 TCTTCATTCAGTTGGAGGATTTGTA 58.221 36.000 0.00 0.00 0.00 2.41
140 141 7.405292 TCTTCATTCAGTTGGAGGATTTGTAT 58.595 34.615 0.00 0.00 0.00 2.29
141 142 7.554118 TCTTCATTCAGTTGGAGGATTTGTATC 59.446 37.037 0.00 0.00 0.00 2.24
142 143 6.720309 TCATTCAGTTGGAGGATTTGTATCA 58.280 36.000 0.00 0.00 32.09 2.15
143 144 7.348815 TCATTCAGTTGGAGGATTTGTATCAT 58.651 34.615 0.00 0.00 32.09 2.45
144 145 7.835682 TCATTCAGTTGGAGGATTTGTATCATT 59.164 33.333 0.00 0.00 32.09 2.57
145 146 9.123902 CATTCAGTTGGAGGATTTGTATCATTA 57.876 33.333 0.00 0.00 32.09 1.90
146 147 9.872684 ATTCAGTTGGAGGATTTGTATCATTAT 57.127 29.630 0.00 0.00 32.09 1.28
147 148 8.908786 TCAGTTGGAGGATTTGTATCATTATC 57.091 34.615 0.00 0.00 32.09 1.75
148 149 7.939039 TCAGTTGGAGGATTTGTATCATTATCC 59.061 37.037 0.00 0.00 37.42 2.59
149 150 7.720957 CAGTTGGAGGATTTGTATCATTATCCA 59.279 37.037 0.00 0.00 39.20 3.41
150 151 8.451245 AGTTGGAGGATTTGTATCATTATCCAT 58.549 33.333 0.00 0.00 39.20 3.41
151 152 9.082313 GTTGGAGGATTTGTATCATTATCCATT 57.918 33.333 0.00 0.00 39.20 3.16
152 153 9.659135 TTGGAGGATTTGTATCATTATCCATTT 57.341 29.630 0.00 0.00 39.20 2.32
156 157 9.812347 AGGATTTGTATCATTATCCATTTAGCA 57.188 29.630 0.00 0.00 39.20 3.49
162 163 9.685276 TGTATCATTATCCATTTAGCATTAGGG 57.315 33.333 0.00 0.00 0.00 3.53
163 164 7.651027 ATCATTATCCATTTAGCATTAGGGC 57.349 36.000 0.00 0.00 0.00 5.19
164 165 6.551085 TCATTATCCATTTAGCATTAGGGCA 58.449 36.000 0.00 0.00 35.83 5.36
165 166 7.009550 TCATTATCCATTTAGCATTAGGGCAA 58.990 34.615 0.00 0.00 35.83 4.52
166 167 7.675195 TCATTATCCATTTAGCATTAGGGCAAT 59.325 33.333 0.00 0.00 35.83 3.56
167 168 7.854166 TTATCCATTTAGCATTAGGGCAATT 57.146 32.000 0.00 0.00 35.83 2.32
168 169 5.789643 TCCATTTAGCATTAGGGCAATTC 57.210 39.130 0.00 0.00 35.83 2.17
169 170 5.207354 TCCATTTAGCATTAGGGCAATTCA 58.793 37.500 0.00 0.00 35.83 2.57
170 171 5.068987 TCCATTTAGCATTAGGGCAATTCAC 59.931 40.000 0.00 0.00 35.83 3.18
171 172 4.630894 TTTAGCATTAGGGCAATTCACG 57.369 40.909 0.00 0.00 35.83 4.35
172 173 2.418368 AGCATTAGGGCAATTCACGA 57.582 45.000 0.00 0.00 35.83 4.35
173 174 2.722094 AGCATTAGGGCAATTCACGAA 58.278 42.857 0.00 0.00 35.83 3.85
174 175 3.088532 AGCATTAGGGCAATTCACGAAA 58.911 40.909 0.00 0.00 35.83 3.46
175 176 3.509575 AGCATTAGGGCAATTCACGAAAA 59.490 39.130 0.00 0.00 35.83 2.29
176 177 3.859386 GCATTAGGGCAATTCACGAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
177 178 4.618227 GCATTAGGGCAATTCACGAAAAGT 60.618 41.667 0.00 0.00 0.00 2.66
178 179 5.392595 GCATTAGGGCAATTCACGAAAAGTA 60.393 40.000 0.00 0.00 0.00 2.24
179 180 5.873179 TTAGGGCAATTCACGAAAAGTAG 57.127 39.130 0.00 0.00 0.00 2.57
180 181 2.488153 AGGGCAATTCACGAAAAGTAGC 59.512 45.455 0.00 0.00 0.00 3.58
181 182 2.415491 GGGCAATTCACGAAAAGTAGCC 60.415 50.000 0.00 0.00 38.84 3.93
182 183 2.505866 GCAATTCACGAAAAGTAGCCG 58.494 47.619 0.00 0.00 0.00 5.52
183 184 2.095919 GCAATTCACGAAAAGTAGCCGT 60.096 45.455 0.00 0.00 36.95 5.68
188 189 3.901667 CACGAAAAGTAGCCGTGTATC 57.098 47.619 0.00 0.00 45.79 2.24
189 190 3.508762 CACGAAAAGTAGCCGTGTATCT 58.491 45.455 0.00 0.00 45.79 1.98
190 191 3.924686 CACGAAAAGTAGCCGTGTATCTT 59.075 43.478 0.00 0.00 45.79 2.40
191 192 4.031426 CACGAAAAGTAGCCGTGTATCTTC 59.969 45.833 0.00 0.00 45.79 2.87
192 193 3.550678 CGAAAAGTAGCCGTGTATCTTCC 59.449 47.826 0.00 0.00 0.00 3.46
193 194 4.501071 GAAAAGTAGCCGTGTATCTTCCA 58.499 43.478 0.00 0.00 0.00 3.53
194 195 4.546829 AAAGTAGCCGTGTATCTTCCAA 57.453 40.909 0.00 0.00 0.00 3.53
195 196 3.521947 AGTAGCCGTGTATCTTCCAAC 57.478 47.619 0.00 0.00 0.00 3.77
196 197 2.167900 AGTAGCCGTGTATCTTCCAACC 59.832 50.000 0.00 0.00 0.00 3.77
197 198 0.252197 AGCCGTGTATCTTCCAACCC 59.748 55.000 0.00 0.00 0.00 4.11
198 199 0.252197 GCCGTGTATCTTCCAACCCT 59.748 55.000 0.00 0.00 0.00 4.34
199 200 2.012051 GCCGTGTATCTTCCAACCCTG 61.012 57.143 0.00 0.00 0.00 4.45
200 201 1.369625 CGTGTATCTTCCAACCCTGC 58.630 55.000 0.00 0.00 0.00 4.85
201 202 1.338674 CGTGTATCTTCCAACCCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
202 203 2.359900 GTGTATCTTCCAACCCTGCAG 58.640 52.381 6.78 6.78 0.00 4.41
203 204 1.340017 TGTATCTTCCAACCCTGCAGC 60.340 52.381 8.66 0.00 0.00 5.25
204 205 0.255890 TATCTTCCAACCCTGCAGCC 59.744 55.000 8.66 0.00 0.00 4.85
205 206 2.505364 ATCTTCCAACCCTGCAGCCC 62.505 60.000 8.66 0.00 0.00 5.19
206 207 3.185203 TTCCAACCCTGCAGCCCT 61.185 61.111 8.66 0.00 0.00 5.19
207 208 2.720144 CTTCCAACCCTGCAGCCCTT 62.720 60.000 8.66 0.00 0.00 3.95
208 209 2.677875 CCAACCCTGCAGCCCTTC 60.678 66.667 8.66 0.00 0.00 3.46
209 210 2.115910 CAACCCTGCAGCCCTTCA 59.884 61.111 8.66 0.00 0.00 3.02
210 211 1.304713 CAACCCTGCAGCCCTTCAT 60.305 57.895 8.66 0.00 0.00 2.57
211 212 0.034186 CAACCCTGCAGCCCTTCATA 60.034 55.000 8.66 0.00 0.00 2.15
212 213 0.257039 AACCCTGCAGCCCTTCATAG 59.743 55.000 8.66 0.00 0.00 2.23
213 214 0.621571 ACCCTGCAGCCCTTCATAGA 60.622 55.000 8.66 0.00 0.00 1.98
214 215 0.108207 CCCTGCAGCCCTTCATAGAG 59.892 60.000 8.66 0.00 0.00 2.43
215 216 0.534652 CCTGCAGCCCTTCATAGAGC 60.535 60.000 8.66 0.00 0.00 4.09
216 217 0.534652 CTGCAGCCCTTCATAGAGCC 60.535 60.000 0.00 0.00 0.00 4.70
217 218 0.984961 TGCAGCCCTTCATAGAGCCT 60.985 55.000 0.00 0.00 0.00 4.58
218 219 0.182299 GCAGCCCTTCATAGAGCCTT 59.818 55.000 0.00 0.00 0.00 4.35
219 220 1.813477 GCAGCCCTTCATAGAGCCTTC 60.813 57.143 0.00 0.00 0.00 3.46
220 221 1.487976 CAGCCCTTCATAGAGCCTTCA 59.512 52.381 0.00 0.00 0.00 3.02
221 222 1.488393 AGCCCTTCATAGAGCCTTCAC 59.512 52.381 0.00 0.00 0.00 3.18
222 223 1.475930 GCCCTTCATAGAGCCTTCACC 60.476 57.143 0.00 0.00 0.00 4.02
223 224 1.839994 CCCTTCATAGAGCCTTCACCA 59.160 52.381 0.00 0.00 0.00 4.17
224 225 2.239654 CCCTTCATAGAGCCTTCACCAA 59.760 50.000 0.00 0.00 0.00 3.67
225 226 3.117738 CCCTTCATAGAGCCTTCACCAAT 60.118 47.826 0.00 0.00 0.00 3.16
226 227 4.530875 CCTTCATAGAGCCTTCACCAATT 58.469 43.478 0.00 0.00 0.00 2.32
227 228 4.952335 CCTTCATAGAGCCTTCACCAATTT 59.048 41.667 0.00 0.00 0.00 1.82
228 229 5.163581 CCTTCATAGAGCCTTCACCAATTTG 60.164 44.000 0.00 0.00 0.00 2.32
229 230 3.696051 TCATAGAGCCTTCACCAATTTGC 59.304 43.478 0.00 0.00 0.00 3.68
230 231 1.999648 AGAGCCTTCACCAATTTGCA 58.000 45.000 0.00 0.00 0.00 4.08
231 232 2.532843 AGAGCCTTCACCAATTTGCAT 58.467 42.857 0.00 0.00 0.00 3.96
232 233 2.901839 AGAGCCTTCACCAATTTGCATT 59.098 40.909 0.00 0.00 0.00 3.56
233 234 3.325716 AGAGCCTTCACCAATTTGCATTT 59.674 39.130 0.00 0.00 0.00 2.32
234 235 3.667360 AGCCTTCACCAATTTGCATTTC 58.333 40.909 0.00 0.00 0.00 2.17
235 236 2.412770 GCCTTCACCAATTTGCATTTCG 59.587 45.455 0.00 0.00 0.00 3.46
236 237 3.860378 GCCTTCACCAATTTGCATTTCGA 60.860 43.478 0.00 0.00 0.00 3.71
237 238 4.305769 CCTTCACCAATTTGCATTTCGAA 58.694 39.130 0.00 0.00 0.00 3.71
238 239 4.749099 CCTTCACCAATTTGCATTTCGAAA 59.251 37.500 13.91 13.91 0.00 3.46
239 240 5.236047 CCTTCACCAATTTGCATTTCGAAAA 59.764 36.000 15.66 0.00 0.00 2.29
240 241 6.238320 CCTTCACCAATTTGCATTTCGAAAAA 60.238 34.615 15.66 4.89 0.00 1.94
241 242 6.042144 TCACCAATTTGCATTTCGAAAAAC 57.958 33.333 15.66 10.40 0.00 2.43
242 243 5.582269 TCACCAATTTGCATTTCGAAAAACA 59.418 32.000 15.66 12.96 0.00 2.83
243 244 5.902981 CACCAATTTGCATTTCGAAAAACAG 59.097 36.000 15.66 6.66 0.00 3.16
244 245 5.584251 ACCAATTTGCATTTCGAAAAACAGT 59.416 32.000 15.66 7.03 0.00 3.55
245 246 5.902981 CCAATTTGCATTTCGAAAAACAGTG 59.097 36.000 15.66 9.29 0.00 3.66
246 247 4.513000 TTTGCATTTCGAAAAACAGTGC 57.487 36.364 20.97 20.97 31.51 4.40
247 248 2.468831 TGCATTTCGAAAAACAGTGCC 58.531 42.857 23.45 11.26 30.35 5.01
248 249 1.792367 GCATTTCGAAAAACAGTGCCC 59.208 47.619 15.66 0.00 0.00 5.36
249 250 2.050691 CATTTCGAAAAACAGTGCCCG 58.949 47.619 15.66 0.00 0.00 6.13
250 251 0.248702 TTTCGAAAAACAGTGCCCGC 60.249 50.000 8.44 0.00 0.00 6.13
251 252 2.050442 CGAAAAACAGTGCCCGCC 60.050 61.111 0.00 0.00 0.00 6.13
252 253 2.050442 GAAAAACAGTGCCCGCCG 60.050 61.111 0.00 0.00 0.00 6.46
253 254 2.831284 AAAAACAGTGCCCGCCGT 60.831 55.556 0.00 0.00 0.00 5.68
254 255 2.726850 GAAAAACAGTGCCCGCCGTC 62.727 60.000 0.00 0.00 0.00 4.79
255 256 3.767630 AAAACAGTGCCCGCCGTCT 62.768 57.895 0.00 0.00 0.00 4.18
256 257 3.767630 AAACAGTGCCCGCCGTCTT 62.768 57.895 0.00 0.00 0.00 3.01
257 258 4.681978 ACAGTGCCCGCCGTCTTC 62.682 66.667 0.00 0.00 0.00 2.87
258 259 4.680237 CAGTGCCCGCCGTCTTCA 62.680 66.667 0.00 0.00 0.00 3.02
259 260 3.706373 AGTGCCCGCCGTCTTCAT 61.706 61.111 0.00 0.00 0.00 2.57
260 261 3.195698 GTGCCCGCCGTCTTCATC 61.196 66.667 0.00 0.00 0.00 2.92
261 262 3.390521 TGCCCGCCGTCTTCATCT 61.391 61.111 0.00 0.00 0.00 2.90
262 263 2.055633 TGCCCGCCGTCTTCATCTA 61.056 57.895 0.00 0.00 0.00 1.98
263 264 1.300233 GCCCGCCGTCTTCATCTAG 60.300 63.158 0.00 0.00 0.00 2.43
264 265 1.735376 GCCCGCCGTCTTCATCTAGA 61.735 60.000 0.00 0.00 0.00 2.43
265 266 0.030908 CCCGCCGTCTTCATCTAGAC 59.969 60.000 0.00 0.00 40.90 2.59
266 267 0.030908 CCGCCGTCTTCATCTAGACC 59.969 60.000 0.00 0.00 41.18 3.85
267 268 0.317103 CGCCGTCTTCATCTAGACCG 60.317 60.000 0.00 0.00 41.18 4.79
268 269 0.739561 GCCGTCTTCATCTAGACCGT 59.260 55.000 0.00 0.00 41.18 4.83
269 270 1.945394 GCCGTCTTCATCTAGACCGTA 59.055 52.381 0.00 0.00 41.18 4.02
270 271 2.357009 GCCGTCTTCATCTAGACCGTAA 59.643 50.000 0.00 0.00 41.18 3.18
271 272 3.791455 GCCGTCTTCATCTAGACCGTAAC 60.791 52.174 0.00 0.00 41.18 2.50
272 273 3.376234 CCGTCTTCATCTAGACCGTAACA 59.624 47.826 0.00 0.00 41.18 2.41
273 274 4.341099 CGTCTTCATCTAGACCGTAACAC 58.659 47.826 0.00 0.00 41.18 3.32
274 275 4.142752 CGTCTTCATCTAGACCGTAACACA 60.143 45.833 0.00 0.00 41.18 3.72
275 276 5.094134 GTCTTCATCTAGACCGTAACACAC 58.906 45.833 0.00 0.00 38.88 3.82
276 277 5.008331 TCTTCATCTAGACCGTAACACACT 58.992 41.667 0.00 0.00 0.00 3.55
277 278 4.696899 TCATCTAGACCGTAACACACTG 57.303 45.455 0.00 0.00 0.00 3.66
278 279 3.442625 TCATCTAGACCGTAACACACTGG 59.557 47.826 0.00 0.00 0.00 4.00
279 280 2.165167 TCTAGACCGTAACACACTGGG 58.835 52.381 0.00 0.00 0.00 4.45
280 281 0.604578 TAGACCGTAACACACTGGGC 59.395 55.000 0.00 0.00 0.00 5.36
281 282 1.070105 GACCGTAACACACTGGGCA 59.930 57.895 0.00 0.00 31.44 5.36
282 283 1.226030 GACCGTAACACACTGGGCAC 61.226 60.000 0.00 0.00 31.44 5.01
295 296 2.031163 GGCACCTCGTGTCAAGCT 59.969 61.111 0.00 0.00 38.14 3.74
296 297 2.029844 GGCACCTCGTGTCAAGCTC 61.030 63.158 0.00 0.00 38.14 4.09
297 298 1.300931 GCACCTCGTGTCAAGCTCA 60.301 57.895 0.00 0.00 35.75 4.26
298 299 0.880278 GCACCTCGTGTCAAGCTCAA 60.880 55.000 0.00 0.00 35.75 3.02
299 300 1.800805 CACCTCGTGTCAAGCTCAAT 58.199 50.000 0.00 0.00 0.00 2.57
300 301 2.146342 CACCTCGTGTCAAGCTCAATT 58.854 47.619 0.00 0.00 0.00 2.32
301 302 2.158449 CACCTCGTGTCAAGCTCAATTC 59.842 50.000 0.00 0.00 0.00 2.17
302 303 1.734465 CCTCGTGTCAAGCTCAATTCC 59.266 52.381 0.00 0.00 0.00 3.01
303 304 1.734465 CTCGTGTCAAGCTCAATTCCC 59.266 52.381 0.00 0.00 0.00 3.97
304 305 1.347707 TCGTGTCAAGCTCAATTCCCT 59.652 47.619 0.00 0.00 0.00 4.20
305 306 2.154462 CGTGTCAAGCTCAATTCCCTT 58.846 47.619 0.00 0.00 0.00 3.95
306 307 2.554032 CGTGTCAAGCTCAATTCCCTTT 59.446 45.455 0.00 0.00 0.00 3.11
307 308 3.365364 CGTGTCAAGCTCAATTCCCTTTC 60.365 47.826 0.00 0.00 0.00 2.62
308 309 3.823304 GTGTCAAGCTCAATTCCCTTTCT 59.177 43.478 0.00 0.00 0.00 2.52
309 310 4.074970 TGTCAAGCTCAATTCCCTTTCTC 58.925 43.478 0.00 0.00 0.00 2.87
310 311 4.202503 TGTCAAGCTCAATTCCCTTTCTCT 60.203 41.667 0.00 0.00 0.00 3.10
311 312 4.764308 GTCAAGCTCAATTCCCTTTCTCTT 59.236 41.667 0.00 0.00 0.00 2.85
312 313 5.242615 GTCAAGCTCAATTCCCTTTCTCTTT 59.757 40.000 0.00 0.00 0.00 2.52
313 314 6.431234 GTCAAGCTCAATTCCCTTTCTCTTTA 59.569 38.462 0.00 0.00 0.00 1.85
314 315 6.656693 TCAAGCTCAATTCCCTTTCTCTTTAG 59.343 38.462 0.00 0.00 0.00 1.85
315 316 6.133253 AGCTCAATTCCCTTTCTCTTTAGT 57.867 37.500 0.00 0.00 0.00 2.24
316 317 6.547402 AGCTCAATTCCCTTTCTCTTTAGTT 58.453 36.000 0.00 0.00 0.00 2.24
317 318 6.657117 AGCTCAATTCCCTTTCTCTTTAGTTC 59.343 38.462 0.00 0.00 0.00 3.01
318 319 6.127869 GCTCAATTCCCTTTCTCTTTAGTTCC 60.128 42.308 0.00 0.00 0.00 3.62
319 320 5.938125 TCAATTCCCTTTCTCTTTAGTTCCG 59.062 40.000 0.00 0.00 0.00 4.30
320 321 4.968971 TTCCCTTTCTCTTTAGTTCCGT 57.031 40.909 0.00 0.00 0.00 4.69
321 322 4.968971 TCCCTTTCTCTTTAGTTCCGTT 57.031 40.909 0.00 0.00 0.00 4.44
322 323 4.891260 TCCCTTTCTCTTTAGTTCCGTTC 58.109 43.478 0.00 0.00 0.00 3.95
323 324 4.591924 TCCCTTTCTCTTTAGTTCCGTTCT 59.408 41.667 0.00 0.00 0.00 3.01
324 325 4.691216 CCCTTTCTCTTTAGTTCCGTTCTG 59.309 45.833 0.00 0.00 0.00 3.02
325 326 5.510861 CCCTTTCTCTTTAGTTCCGTTCTGA 60.511 44.000 0.00 0.00 0.00 3.27
326 327 5.635700 CCTTTCTCTTTAGTTCCGTTCTGAG 59.364 44.000 0.00 0.00 0.00 3.35
327 328 4.175787 TCTCTTTAGTTCCGTTCTGAGC 57.824 45.455 0.00 0.00 0.00 4.26
328 329 2.917971 CTCTTTAGTTCCGTTCTGAGCG 59.082 50.000 6.95 6.95 0.00 5.03
350 351 5.679792 GCGGAAGGCTATTATTTGTAAAACG 59.320 40.000 0.00 0.00 39.11 3.60
351 352 5.679792 CGGAAGGCTATTATTTGTAAAACGC 59.320 40.000 0.00 0.00 0.00 4.84
352 353 5.975344 GGAAGGCTATTATTTGTAAAACGCC 59.025 40.000 0.00 0.00 35.34 5.68
353 354 6.404954 GGAAGGCTATTATTTGTAAAACGCCA 60.405 38.462 0.00 0.00 37.48 5.69
736 751 1.049402 CCCTTATCTCCTTCCCCGAC 58.951 60.000 0.00 0.00 0.00 4.79
737 752 1.413227 CCCTTATCTCCTTCCCCGACT 60.413 57.143 0.00 0.00 0.00 4.18
738 753 1.689273 CCTTATCTCCTTCCCCGACTG 59.311 57.143 0.00 0.00 0.00 3.51
739 754 2.667470 CTTATCTCCTTCCCCGACTGA 58.333 52.381 0.00 0.00 0.00 3.41
740 755 2.068834 TATCTCCTTCCCCGACTGAC 57.931 55.000 0.00 0.00 0.00 3.51
769 789 2.114670 CGCCGCATTTGTCCCATCT 61.115 57.895 0.00 0.00 0.00 2.90
968 1011 3.086600 CAGTGCCCTCTCCCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
1577 1628 0.925558 TGCCCATCTGCCCAGAATTA 59.074 50.000 1.62 0.00 41.36 1.40
1595 1646 0.976641 TATCGATGCCACCTGATCCC 59.023 55.000 8.54 0.00 0.00 3.85
1615 1666 3.378112 CCCTGCTTTCGCTTTGATCATAA 59.622 43.478 0.00 0.00 36.97 1.90
1698 1749 6.594788 AATTTGCAGTGTCAGTAATTCCAT 57.405 33.333 0.00 0.00 0.00 3.41
1699 1750 5.627499 TTTGCAGTGTCAGTAATTCCATC 57.373 39.130 0.00 0.00 0.00 3.51
1903 1988 1.004504 GCAATTCTGATTCGGACGAGC 60.005 52.381 0.00 0.00 0.00 5.03
2016 2101 3.550842 GCTCTTTTCATGTGGGTGTTGTC 60.551 47.826 0.00 0.00 0.00 3.18
2211 2296 2.440409 AGAATTTTGACGCATGGAGCT 58.560 42.857 0.00 0.00 42.61 4.09
2262 2347 6.183359 CGCAATTGAGAAATCTTACAAGCAAC 60.183 38.462 10.34 0.00 0.00 4.17
2487 2572 4.590222 ACAGTTCCTTTTCATGCTCCATTT 59.410 37.500 0.00 0.00 0.00 2.32
2715 2800 4.034510 CGTGAAATGCTTTCTCCATAGTCC 59.965 45.833 9.17 0.00 40.32 3.85
2717 2802 5.295540 GTGAAATGCTTTCTCCATAGTCCTC 59.704 44.000 9.17 0.00 40.32 3.71
2916 3003 3.355378 CTCACCAAGGCATATTTGACCA 58.645 45.455 0.00 0.00 0.00 4.02
2956 3043 7.322664 ACTGTATGGCCAAGTAATTCATTTTG 58.677 34.615 10.96 0.00 0.00 2.44
2968 3055 8.133024 AGTAATTCATTTTGCCAAAGTATCCA 57.867 30.769 0.00 0.00 0.00 3.41
2993 3081 5.003160 TGGAATGATGTGGTGAGTAAACAG 58.997 41.667 0.00 0.00 0.00 3.16
3211 3299 4.278170 CCACACTTGCTCAGGTTTTGAATA 59.722 41.667 0.00 0.00 34.81 1.75
3246 3334 5.681337 TTCTTTCGTGTGCATGTCAAATA 57.319 34.783 0.00 0.00 0.00 1.40
3264 3352 8.190122 TGTCAAATATTCACCACATTAATCAGC 58.810 33.333 0.00 0.00 0.00 4.26
3436 3524 5.163693 TGAGCTTGCATTAGATGAATGTGTG 60.164 40.000 0.00 0.00 45.88 3.82
3568 3656 6.992063 TGGAATCTCATAGCAAGAGAAAAC 57.008 37.500 6.82 2.21 44.56 2.43
3679 3767 5.008415 CAGAAATCACCATCTCCAACATAGC 59.992 44.000 0.00 0.00 0.00 2.97
3682 3770 5.830799 ATCACCATCTCCAACATAGCATA 57.169 39.130 0.00 0.00 0.00 3.14
3888 3976 5.242795 AGTAACTTATTTGCTGGTCACCT 57.757 39.130 0.00 0.00 0.00 4.00
4101 4189 4.080469 TGTGAGAAGGGATACTCTCGTAGT 60.080 45.833 0.00 0.00 42.62 2.73
4225 4313 0.107214 TGGAACTGAATGCCGATCCC 60.107 55.000 0.00 0.00 0.00 3.85
4232 4320 1.776034 GAATGCCGATCCCGAAGCAC 61.776 60.000 0.00 0.00 36.20 4.40
4339 4427 1.944024 ACTACTCGATCAGAAGCTCCG 59.056 52.381 0.00 0.00 0.00 4.63
4345 4433 2.158943 TCGATCAGAAGCTCCGTCTCTA 60.159 50.000 0.00 0.00 0.00 2.43
4608 4696 8.777413 CAGTGTTTCAGTTTCAGAAGATGATAA 58.223 33.333 1.36 0.00 37.89 1.75
4622 4710 4.375272 AGATGATAAACATGTCAGCCTCG 58.625 43.478 0.00 0.00 39.56 4.63
4739 4827 7.771361 TGTTGACTGACCTAATGTTTTTCTGTA 59.229 33.333 0.00 0.00 0.00 2.74
4740 4828 8.784043 GTTGACTGACCTAATGTTTTTCTGTAT 58.216 33.333 0.00 0.00 0.00 2.29
4753 4841 6.834451 TGTTTTTCTGTATTGGGACTTGGTAA 59.166 34.615 0.00 0.00 0.00 2.85
4811 4899 3.749088 TCGGCAATTTAAACTCGTGTCAT 59.251 39.130 0.00 0.00 0.00 3.06
4848 4937 5.135383 TGCGTCTATACCTAGGTGTTGTAT 58.865 41.667 25.33 11.87 0.00 2.29
4878 4967 1.218844 GGCCAGTCAACCCCCTAATA 58.781 55.000 0.00 0.00 0.00 0.98
4896 4985 8.787852 CCCCTAATAAAGCACTAAGAATGAATC 58.212 37.037 0.00 0.00 0.00 2.52
4904 4993 8.940768 AAGCACTAAGAATGAATCTAGAGTTC 57.059 34.615 0.00 3.58 37.42 3.01
4911 5000 6.568869 AGAATGAATCTAGAGTTCCGAACTG 58.431 40.000 18.59 4.75 38.14 3.16
4920 5009 7.173032 TCTAGAGTTCCGAACTGGCATATATA 58.827 38.462 18.59 0.00 43.03 0.86
4921 5010 6.859112 AGAGTTCCGAACTGGCATATATAT 57.141 37.500 18.59 0.00 43.03 0.86
5029 5121 1.618487 ATGGCGCTCCCTAGTACTAC 58.382 55.000 7.64 0.00 0.00 2.73
5062 5154 4.464951 TGATTTGAACGCTTCTACTCCCTA 59.535 41.667 0.00 0.00 0.00 3.53
5077 5250 3.772025 ACTCCCTATGTCTCCTCAGTTTG 59.228 47.826 0.00 0.00 0.00 2.93
5082 5255 5.129485 CCCTATGTCTCCTCAGTTTGTGTAT 59.871 44.000 0.00 0.00 0.00 2.29
5090 5263 5.338632 TCCTCAGTTTGTGTATCCTTCCTA 58.661 41.667 0.00 0.00 0.00 2.94
5091 5264 5.783360 TCCTCAGTTTGTGTATCCTTCCTAA 59.217 40.000 0.00 0.00 0.00 2.69
5092 5265 6.070767 TCCTCAGTTTGTGTATCCTTCCTAAG 60.071 42.308 0.00 0.00 0.00 2.18
5093 5266 6.295916 CCTCAGTTTGTGTATCCTTCCTAAGT 60.296 42.308 0.00 0.00 0.00 2.24
5094 5267 6.698380 TCAGTTTGTGTATCCTTCCTAAGTC 58.302 40.000 0.00 0.00 0.00 3.01
5095 5268 5.577164 CAGTTTGTGTATCCTTCCTAAGTCG 59.423 44.000 0.00 0.00 0.00 4.18
5096 5269 5.245526 AGTTTGTGTATCCTTCCTAAGTCGT 59.754 40.000 0.00 0.00 0.00 4.34
5106 5288 4.502016 CTTCCTAAGTCGTCCTTTTACCC 58.498 47.826 0.00 0.00 34.46 3.69
5107 5289 3.509442 TCCTAAGTCGTCCTTTTACCCA 58.491 45.455 0.00 0.00 34.46 4.51
5138 5321 4.227512 TGAGCTTGTATTGTTGCAGTTG 57.772 40.909 0.00 0.00 0.00 3.16
5156 5339 3.120442 AGTTGCCGATTGTTAAACTACGC 60.120 43.478 0.00 0.00 29.56 4.42
5184 5367 5.142061 TGAACCTTAGTTGTAATCAGCGA 57.858 39.130 0.00 0.00 35.94 4.93
5185 5368 5.543714 TGAACCTTAGTTGTAATCAGCGAA 58.456 37.500 0.00 0.00 35.94 4.70
5186 5369 6.170506 TGAACCTTAGTTGTAATCAGCGAAT 58.829 36.000 0.00 0.00 35.94 3.34
5193 5376 6.992063 AGTTGTAATCAGCGAATGAGAAAT 57.008 33.333 0.00 0.00 42.53 2.17
5194 5377 9.594478 TTAGTTGTAATCAGCGAATGAGAAATA 57.406 29.630 0.00 0.00 42.53 1.40
5207 5390 8.859156 GCGAATGAGAAATAGCAAAAATAAACA 58.141 29.630 0.00 0.00 0.00 2.83
5315 5587 6.455647 TCGTTGAGACAAATCTTGTACTCAT 58.544 36.000 15.77 0.00 45.52 2.90
5316 5588 7.599171 TCGTTGAGACAAATCTTGTACTCATA 58.401 34.615 15.77 9.04 45.52 2.15
5317 5589 8.251026 TCGTTGAGACAAATCTTGTACTCATAT 58.749 33.333 15.77 0.00 45.52 1.78
5318 5590 9.516314 CGTTGAGACAAATCTTGTACTCATATA 57.484 33.333 15.77 5.74 45.52 0.86
5320 5592 9.534565 TTGAGACAAATCTTGTACTCATATAGC 57.465 33.333 15.77 0.00 45.52 2.97
5371 5660 7.552458 TGTACTACATGGCATCAGTTTTATG 57.448 36.000 14.55 0.00 0.00 1.90
5372 5661 6.542005 TGTACTACATGGCATCAGTTTTATGG 59.458 38.462 14.55 0.00 0.00 2.74
5373 5662 3.806625 ACATGGCATCAGTTTTATGGC 57.193 42.857 0.00 0.00 46.90 4.40
5377 5666 3.806625 GGCATCAGTTTTATGGCATGT 57.193 42.857 10.98 0.00 46.21 3.21
5378 5667 4.916983 GGCATCAGTTTTATGGCATGTA 57.083 40.909 10.98 0.00 46.21 2.29
5379 5668 5.261209 GGCATCAGTTTTATGGCATGTAA 57.739 39.130 10.98 1.30 46.21 2.41
5380 5669 5.659463 GGCATCAGTTTTATGGCATGTAAA 58.341 37.500 10.98 7.80 46.21 2.01
5381 5670 6.282930 GGCATCAGTTTTATGGCATGTAAAT 58.717 36.000 10.98 0.30 46.21 1.40
5382 5671 6.762661 GGCATCAGTTTTATGGCATGTAAATT 59.237 34.615 10.98 4.83 46.21 1.82
5383 5672 7.925483 GGCATCAGTTTTATGGCATGTAAATTA 59.075 33.333 10.98 0.00 46.21 1.40
5384 5673 9.480053 GCATCAGTTTTATGGCATGTAAATTAT 57.520 29.630 10.98 0.00 0.00 1.28
5478 5775 9.267084 GGTTTTCTAGAGAAAGATGATATCACC 57.733 37.037 7.78 0.00 43.90 4.02
5485 5782 7.971201 AGAGAAAGATGATATCACCTAATGCA 58.029 34.615 7.78 0.00 0.00 3.96
5490 5787 7.012661 AGATGATATCACCTAATGCACATGA 57.987 36.000 7.78 0.00 0.00 3.07
5542 5839 8.691661 TTTTTAGGCAAATATATCCTCACTCC 57.308 34.615 0.00 0.00 0.00 3.85
5543 5840 7.387265 TTTAGGCAAATATATCCTCACTCCA 57.613 36.000 0.00 0.00 0.00 3.86
5544 5841 7.574021 TTAGGCAAATATATCCTCACTCCAT 57.426 36.000 0.00 0.00 0.00 3.41
5545 5842 6.460103 AGGCAAATATATCCTCACTCCATT 57.540 37.500 0.00 0.00 0.00 3.16
5546 5843 6.479884 AGGCAAATATATCCTCACTCCATTC 58.520 40.000 0.00 0.00 0.00 2.67
5547 5844 5.649831 GGCAAATATATCCTCACTCCATTCC 59.350 44.000 0.00 0.00 0.00 3.01
5548 5845 6.240894 GCAAATATATCCTCACTCCATTCCA 58.759 40.000 0.00 0.00 0.00 3.53
5549 5846 6.150140 GCAAATATATCCTCACTCCATTCCAC 59.850 42.308 0.00 0.00 0.00 4.02
5550 5847 7.226441 CAAATATATCCTCACTCCATTCCACA 58.774 38.462 0.00 0.00 0.00 4.17
5551 5848 7.392766 AATATATCCTCACTCCATTCCACAA 57.607 36.000 0.00 0.00 0.00 3.33
5552 5849 5.919348 ATATCCTCACTCCATTCCACAAT 57.081 39.130 0.00 0.00 0.00 2.71
5553 5850 3.354948 TCCTCACTCCATTCCACAATG 57.645 47.619 0.00 0.00 39.45 2.82
5554 5851 1.747355 CCTCACTCCATTCCACAATGC 59.253 52.381 0.00 0.00 38.53 3.56
5555 5852 2.439409 CTCACTCCATTCCACAATGCA 58.561 47.619 0.00 0.00 38.53 3.96
5556 5853 2.422479 CTCACTCCATTCCACAATGCAG 59.578 50.000 0.00 0.00 38.53 4.41
5557 5854 2.165167 CACTCCATTCCACAATGCAGT 58.835 47.619 0.00 0.00 41.07 4.40
5558 5855 2.165167 ACTCCATTCCACAATGCAGTG 58.835 47.619 13.51 13.51 39.24 3.66
5559 5856 0.889994 TCCATTCCACAATGCAGTGC 59.110 50.000 15.18 8.58 38.53 4.40
5560 5857 0.604073 CCATTCCACAATGCAGTGCA 59.396 50.000 22.22 22.22 44.86 4.57
5561 5858 1.670674 CCATTCCACAATGCAGTGCAC 60.671 52.381 22.44 9.40 43.04 4.57
5562 5859 1.000052 CATTCCACAATGCAGTGCACA 60.000 47.619 22.44 0.00 43.04 4.57
5563 5860 1.330234 TTCCACAATGCAGTGCACAT 58.670 45.000 22.44 9.93 43.04 3.21
5564 5861 1.330234 TCCACAATGCAGTGCACATT 58.670 45.000 22.44 9.29 43.04 2.71
5565 5862 1.687660 TCCACAATGCAGTGCACATTT 59.312 42.857 22.44 8.45 43.04 2.32
5566 5863 2.889678 TCCACAATGCAGTGCACATTTA 59.110 40.909 22.44 1.60 43.04 1.40
5567 5864 3.057386 TCCACAATGCAGTGCACATTTAG 60.057 43.478 22.44 8.21 43.04 1.85
5568 5865 3.305539 CCACAATGCAGTGCACATTTAGT 60.306 43.478 22.44 9.80 43.04 2.24
5569 5866 4.300803 CACAATGCAGTGCACATTTAGTT 58.699 39.130 22.44 5.94 43.04 2.24
5570 5867 4.383649 CACAATGCAGTGCACATTTAGTTC 59.616 41.667 22.44 0.00 43.04 3.01
5571 5868 4.279169 ACAATGCAGTGCACATTTAGTTCT 59.721 37.500 22.44 0.00 43.04 3.01
5572 5869 4.691860 ATGCAGTGCACATTTAGTTCTC 57.308 40.909 22.44 0.00 43.04 2.87
5573 5870 3.743521 TGCAGTGCACATTTAGTTCTCT 58.256 40.909 21.04 0.00 31.71 3.10
5574 5871 3.499537 TGCAGTGCACATTTAGTTCTCTG 59.500 43.478 21.04 4.75 37.81 3.35
5575 5872 3.748048 GCAGTGCACATTTAGTTCTCTGA 59.252 43.478 21.04 0.00 37.22 3.27
5576 5873 4.214119 GCAGTGCACATTTAGTTCTCTGAA 59.786 41.667 21.04 0.00 37.22 3.02
5577 5874 5.277974 GCAGTGCACATTTAGTTCTCTGAAA 60.278 40.000 21.04 0.00 37.22 2.69
5578 5875 6.369005 CAGTGCACATTTAGTTCTCTGAAAG 58.631 40.000 21.04 0.00 37.22 2.62
5579 5876 6.017605 CAGTGCACATTTAGTTCTCTGAAAGT 60.018 38.462 21.04 0.00 37.22 2.66
5580 5877 6.543831 AGTGCACATTTAGTTCTCTGAAAGTT 59.456 34.615 21.04 0.00 33.76 2.66
5581 5878 7.715249 AGTGCACATTTAGTTCTCTGAAAGTTA 59.285 33.333 21.04 0.00 33.76 2.24
5582 5879 8.342634 GTGCACATTTAGTTCTCTGAAAGTTAA 58.657 33.333 13.17 0.00 33.76 2.01
5583 5880 8.898761 TGCACATTTAGTTCTCTGAAAGTTAAA 58.101 29.630 0.00 0.00 33.76 1.52
5584 5881 9.730420 GCACATTTAGTTCTCTGAAAGTTAAAA 57.270 29.630 0.00 0.00 33.76 1.52
5591 5888 8.738645 AGTTCTCTGAAAGTTAAAACATGTCT 57.261 30.769 0.00 0.00 33.76 3.41
5592 5889 9.832445 AGTTCTCTGAAAGTTAAAACATGTCTA 57.168 29.630 0.00 0.00 33.76 2.59
5595 5892 9.778741 TCTCTGAAAGTTAAAACATGTCTATGT 57.221 29.630 0.00 0.00 41.80 2.29
5642 5939 8.887036 ATAAACGTTCACTATCATTAGATGCA 57.113 30.769 0.00 0.00 35.67 3.96
5643 5940 7.792374 AAACGTTCACTATCATTAGATGCAT 57.208 32.000 0.00 0.00 35.67 3.96
5644 5941 7.413475 AACGTTCACTATCATTAGATGCATC 57.587 36.000 19.37 19.37 35.67 3.91
5645 5942 6.515832 ACGTTCACTATCATTAGATGCATCA 58.484 36.000 27.81 9.38 35.67 3.07
5646 5943 7.157347 ACGTTCACTATCATTAGATGCATCAT 58.843 34.615 27.81 14.55 35.67 2.45
5647 5944 7.117379 ACGTTCACTATCATTAGATGCATCATG 59.883 37.037 27.81 21.82 35.67 3.07
5648 5945 7.330208 CGTTCACTATCATTAGATGCATCATGA 59.670 37.037 27.81 25.71 35.67 3.07
5649 5946 8.996271 GTTCACTATCATTAGATGCATCATGAA 58.004 33.333 27.81 18.11 35.67 2.57
5650 5947 8.773404 TCACTATCATTAGATGCATCATGAAG 57.227 34.615 27.81 23.67 35.67 3.02
5651 5948 8.373220 TCACTATCATTAGATGCATCATGAAGT 58.627 33.333 27.81 24.14 35.67 3.01
5652 5949 8.443937 CACTATCATTAGATGCATCATGAAGTG 58.556 37.037 28.64 28.64 35.67 3.16
5653 5950 8.155510 ACTATCATTAGATGCATCATGAAGTGT 58.844 33.333 27.81 21.06 35.67 3.55
5654 5951 9.649167 CTATCATTAGATGCATCATGAAGTGTA 57.351 33.333 27.81 15.41 35.67 2.90
5655 5952 7.719778 TCATTAGATGCATCATGAAGTGTAC 57.280 36.000 27.81 0.00 0.00 2.90
5656 5953 7.503549 TCATTAGATGCATCATGAAGTGTACT 58.496 34.615 27.81 5.73 0.00 2.73
5657 5954 7.989170 TCATTAGATGCATCATGAAGTGTACTT 59.011 33.333 27.81 5.53 39.23 2.24
5658 5955 8.618677 CATTAGATGCATCATGAAGTGTACTTT 58.381 33.333 27.81 5.10 36.11 2.66
5659 5956 8.565896 TTAGATGCATCATGAAGTGTACTTTT 57.434 30.769 27.81 4.45 36.11 2.27
5660 5957 9.665719 TTAGATGCATCATGAAGTGTACTTTTA 57.334 29.630 27.81 3.48 36.11 1.52
5661 5958 7.978982 AGATGCATCATGAAGTGTACTTTTAC 58.021 34.615 27.81 0.00 36.11 2.01
5662 5959 7.607607 AGATGCATCATGAAGTGTACTTTTACA 59.392 33.333 27.81 0.00 36.11 2.41
5663 5960 7.503521 TGCATCATGAAGTGTACTTTTACAA 57.496 32.000 0.00 0.00 40.00 2.41
5664 5961 8.109705 TGCATCATGAAGTGTACTTTTACAAT 57.890 30.769 0.00 0.00 40.00 2.71
5665 5962 8.575589 TGCATCATGAAGTGTACTTTTACAATT 58.424 29.630 0.00 0.00 46.53 2.32
5666 5963 9.410556 GCATCATGAAGTGTACTTTTACAATTT 57.589 29.630 0.00 0.00 44.48 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.990959 AAGGCCAACCAAGAACAAAAA 57.009 38.095 5.01 0.00 39.06 1.94
43 44 5.622346 AATAAGGCCAACCAAGAACAAAA 57.378 34.783 5.01 0.00 39.06 2.44
44 45 5.365314 AGAAATAAGGCCAACCAAGAACAAA 59.635 36.000 5.01 0.00 39.06 2.83
45 46 4.898861 AGAAATAAGGCCAACCAAGAACAA 59.101 37.500 5.01 0.00 39.06 2.83
46 47 4.479158 AGAAATAAGGCCAACCAAGAACA 58.521 39.130 5.01 0.00 39.06 3.18
47 48 5.468540 AAGAAATAAGGCCAACCAAGAAC 57.531 39.130 5.01 0.00 39.06 3.01
48 49 5.838521 AGAAAGAAATAAGGCCAACCAAGAA 59.161 36.000 5.01 0.00 39.06 2.52
49 50 5.393866 AGAAAGAAATAAGGCCAACCAAGA 58.606 37.500 5.01 0.00 39.06 3.02
50 51 5.728637 AGAAAGAAATAAGGCCAACCAAG 57.271 39.130 5.01 0.00 39.06 3.61
51 52 5.185056 GCTAGAAAGAAATAAGGCCAACCAA 59.815 40.000 5.01 0.00 39.06 3.67
52 53 4.705023 GCTAGAAAGAAATAAGGCCAACCA 59.295 41.667 5.01 0.00 39.06 3.67
53 54 4.098044 GGCTAGAAAGAAATAAGGCCAACC 59.902 45.833 5.01 0.00 38.35 3.77
54 55 4.705023 TGGCTAGAAAGAAATAAGGCCAAC 59.295 41.667 5.01 0.00 44.13 3.77
55 56 4.929479 TGGCTAGAAAGAAATAAGGCCAA 58.071 39.130 5.01 0.00 44.13 4.52
56 57 4.270008 GTGGCTAGAAAGAAATAAGGCCA 58.730 43.478 5.01 0.00 44.75 5.36
57 58 3.632604 GGTGGCTAGAAAGAAATAAGGCC 59.367 47.826 0.00 0.00 38.87 5.19
58 59 4.270008 TGGTGGCTAGAAAGAAATAAGGC 58.730 43.478 0.00 0.00 0.00 4.35
59 60 5.946377 ACTTGGTGGCTAGAAAGAAATAAGG 59.054 40.000 0.00 0.00 0.00 2.69
60 61 6.094186 GGACTTGGTGGCTAGAAAGAAATAAG 59.906 42.308 0.00 0.00 0.00 1.73
61 62 5.944007 GGACTTGGTGGCTAGAAAGAAATAA 59.056 40.000 0.00 0.00 0.00 1.40
62 63 5.497474 GGACTTGGTGGCTAGAAAGAAATA 58.503 41.667 0.00 0.00 0.00 1.40
63 64 4.336280 GGACTTGGTGGCTAGAAAGAAAT 58.664 43.478 0.00 0.00 0.00 2.17
64 65 3.751518 GGACTTGGTGGCTAGAAAGAAA 58.248 45.455 0.00 0.00 0.00 2.52
65 66 2.289444 CGGACTTGGTGGCTAGAAAGAA 60.289 50.000 0.00 0.00 0.00 2.52
66 67 1.275291 CGGACTTGGTGGCTAGAAAGA 59.725 52.381 0.00 0.00 0.00 2.52
67 68 1.002087 ACGGACTTGGTGGCTAGAAAG 59.998 52.381 0.00 0.00 0.00 2.62
68 69 1.053424 ACGGACTTGGTGGCTAGAAA 58.947 50.000 0.00 0.00 0.00 2.52
69 70 1.822990 CTACGGACTTGGTGGCTAGAA 59.177 52.381 0.00 0.00 0.00 2.10
70 71 1.272313 ACTACGGACTTGGTGGCTAGA 60.272 52.381 0.00 0.00 0.00 2.43
71 72 1.183549 ACTACGGACTTGGTGGCTAG 58.816 55.000 0.00 0.00 0.00 3.42
72 73 2.493278 GTTACTACGGACTTGGTGGCTA 59.507 50.000 0.00 0.00 0.00 3.93
73 74 1.274447 GTTACTACGGACTTGGTGGCT 59.726 52.381 0.00 0.00 0.00 4.75
74 75 1.718396 GTTACTACGGACTTGGTGGC 58.282 55.000 0.00 0.00 0.00 5.01
75 76 1.986698 CGTTACTACGGACTTGGTGG 58.013 55.000 0.00 0.00 43.94 4.61
83 84 8.010299 TACAAAGGTATGTGCGTTACTACGGA 62.010 42.308 0.00 0.00 46.17 4.69
84 85 5.903138 TACAAAGGTATGTGCGTTACTACGG 60.903 44.000 0.00 0.00 40.11 4.02
85 86 5.003778 GTACAAAGGTATGTGCGTTACTACG 59.996 44.000 0.00 0.00 41.37 3.51
86 87 5.863397 TGTACAAAGGTATGTGCGTTACTAC 59.137 40.000 0.00 0.00 38.57 2.73
87 88 6.023357 TGTACAAAGGTATGTGCGTTACTA 57.977 37.500 0.00 0.00 38.57 1.82
88 89 4.885413 TGTACAAAGGTATGTGCGTTACT 58.115 39.130 0.00 0.00 38.57 2.24
89 90 5.121142 ACATGTACAAAGGTATGTGCGTTAC 59.879 40.000 0.00 0.00 38.57 2.50
90 91 5.239351 ACATGTACAAAGGTATGTGCGTTA 58.761 37.500 0.00 0.00 38.57 3.18
91 92 4.069304 ACATGTACAAAGGTATGTGCGTT 58.931 39.130 0.00 0.00 38.57 4.84
92 93 3.670625 ACATGTACAAAGGTATGTGCGT 58.329 40.909 0.00 0.00 38.57 5.24
93 94 4.678509 AACATGTACAAAGGTATGTGCG 57.321 40.909 0.00 0.00 38.57 5.34
94 95 6.254281 AGAAACATGTACAAAGGTATGTGC 57.746 37.500 0.00 0.00 36.58 4.57
95 96 7.870826 TGAAGAAACATGTACAAAGGTATGTG 58.129 34.615 0.00 0.00 34.75 3.21
96 97 8.635765 ATGAAGAAACATGTACAAAGGTATGT 57.364 30.769 0.00 0.00 37.32 2.29
97 98 9.559958 GAATGAAGAAACATGTACAAAGGTATG 57.440 33.333 0.00 0.00 0.00 2.39
98 99 9.295825 TGAATGAAGAAACATGTACAAAGGTAT 57.704 29.630 0.00 0.00 0.00 2.73
99 100 8.684386 TGAATGAAGAAACATGTACAAAGGTA 57.316 30.769 0.00 0.00 0.00 3.08
100 101 7.285401 ACTGAATGAAGAAACATGTACAAAGGT 59.715 33.333 0.00 0.00 0.00 3.50
101 102 7.651808 ACTGAATGAAGAAACATGTACAAAGG 58.348 34.615 0.00 0.00 0.00 3.11
102 103 8.961092 CAACTGAATGAAGAAACATGTACAAAG 58.039 33.333 0.00 0.00 0.00 2.77
103 104 7.920151 CCAACTGAATGAAGAAACATGTACAAA 59.080 33.333 0.00 0.00 0.00 2.83
104 105 7.284261 TCCAACTGAATGAAGAAACATGTACAA 59.716 33.333 0.00 0.00 0.00 2.41
105 106 6.770303 TCCAACTGAATGAAGAAACATGTACA 59.230 34.615 0.00 0.00 0.00 2.90
106 107 7.202016 TCCAACTGAATGAAGAAACATGTAC 57.798 36.000 0.00 0.00 0.00 2.90
107 108 6.430925 CCTCCAACTGAATGAAGAAACATGTA 59.569 38.462 0.00 0.00 0.00 2.29
108 109 5.242393 CCTCCAACTGAATGAAGAAACATGT 59.758 40.000 0.00 0.00 0.00 3.21
109 110 5.474532 TCCTCCAACTGAATGAAGAAACATG 59.525 40.000 0.00 0.00 0.00 3.21
110 111 5.634118 TCCTCCAACTGAATGAAGAAACAT 58.366 37.500 0.00 0.00 0.00 2.71
111 112 5.047566 TCCTCCAACTGAATGAAGAAACA 57.952 39.130 0.00 0.00 0.00 2.83
112 113 6.581171 AATCCTCCAACTGAATGAAGAAAC 57.419 37.500 0.00 0.00 0.00 2.78
113 114 6.550854 ACAAATCCTCCAACTGAATGAAGAAA 59.449 34.615 0.00 0.00 0.00 2.52
114 115 6.070656 ACAAATCCTCCAACTGAATGAAGAA 58.929 36.000 0.00 0.00 0.00 2.52
115 116 5.634118 ACAAATCCTCCAACTGAATGAAGA 58.366 37.500 0.00 0.00 0.00 2.87
116 117 5.972107 ACAAATCCTCCAACTGAATGAAG 57.028 39.130 0.00 0.00 0.00 3.02
117 118 7.174413 TGATACAAATCCTCCAACTGAATGAA 58.826 34.615 0.00 0.00 0.00 2.57
118 119 6.720309 TGATACAAATCCTCCAACTGAATGA 58.280 36.000 0.00 0.00 0.00 2.57
119 120 7.578310 ATGATACAAATCCTCCAACTGAATG 57.422 36.000 0.00 0.00 0.00 2.67
120 121 9.872684 ATAATGATACAAATCCTCCAACTGAAT 57.127 29.630 0.00 0.00 0.00 2.57
121 122 9.342308 GATAATGATACAAATCCTCCAACTGAA 57.658 33.333 0.00 0.00 0.00 3.02
122 123 7.939039 GGATAATGATACAAATCCTCCAACTGA 59.061 37.037 0.00 0.00 35.91 3.41
123 124 7.720957 TGGATAATGATACAAATCCTCCAACTG 59.279 37.037 13.58 0.00 38.96 3.16
124 125 7.815383 TGGATAATGATACAAATCCTCCAACT 58.185 34.615 13.58 0.00 38.96 3.16
125 126 8.641498 ATGGATAATGATACAAATCCTCCAAC 57.359 34.615 13.58 0.00 38.96 3.77
126 127 9.659135 AAATGGATAATGATACAAATCCTCCAA 57.341 29.630 13.58 0.61 38.96 3.53
130 131 9.812347 TGCTAAATGGATAATGATACAAATCCT 57.188 29.630 13.58 2.46 38.96 3.24
136 137 9.685276 CCCTAATGCTAAATGGATAATGATACA 57.315 33.333 0.00 0.00 0.00 2.29
137 138 8.624776 GCCCTAATGCTAAATGGATAATGATAC 58.375 37.037 0.00 0.00 0.00 2.24
138 139 8.335484 TGCCCTAATGCTAAATGGATAATGATA 58.665 33.333 0.00 0.00 0.00 2.15
139 140 7.184161 TGCCCTAATGCTAAATGGATAATGAT 58.816 34.615 0.00 0.00 0.00 2.45
140 141 6.551085 TGCCCTAATGCTAAATGGATAATGA 58.449 36.000 0.00 0.00 0.00 2.57
141 142 6.839124 TGCCCTAATGCTAAATGGATAATG 57.161 37.500 0.00 0.00 0.00 1.90
142 143 8.439964 AATTGCCCTAATGCTAAATGGATAAT 57.560 30.769 0.00 0.00 0.00 1.28
143 144 7.508636 TGAATTGCCCTAATGCTAAATGGATAA 59.491 33.333 0.00 0.00 0.00 1.75
144 145 7.009550 TGAATTGCCCTAATGCTAAATGGATA 58.990 34.615 0.00 0.00 0.00 2.59
145 146 5.840149 TGAATTGCCCTAATGCTAAATGGAT 59.160 36.000 0.00 0.00 0.00 3.41
146 147 5.068987 GTGAATTGCCCTAATGCTAAATGGA 59.931 40.000 0.00 0.00 0.00 3.41
147 148 5.291971 GTGAATTGCCCTAATGCTAAATGG 58.708 41.667 0.00 0.00 0.00 3.16
148 149 4.977963 CGTGAATTGCCCTAATGCTAAATG 59.022 41.667 0.00 0.00 0.00 2.32
149 150 4.887071 TCGTGAATTGCCCTAATGCTAAAT 59.113 37.500 0.00 0.00 0.00 1.40
150 151 4.265893 TCGTGAATTGCCCTAATGCTAAA 58.734 39.130 0.00 0.00 0.00 1.85
151 152 3.879998 TCGTGAATTGCCCTAATGCTAA 58.120 40.909 0.00 0.00 0.00 3.09
152 153 3.552132 TCGTGAATTGCCCTAATGCTA 57.448 42.857 0.00 0.00 0.00 3.49
153 154 2.418368 TCGTGAATTGCCCTAATGCT 57.582 45.000 0.00 0.00 0.00 3.79
154 155 3.502191 TTTCGTGAATTGCCCTAATGC 57.498 42.857 0.00 0.00 0.00 3.56
155 156 5.059404 ACTTTTCGTGAATTGCCCTAATG 57.941 39.130 0.00 0.00 0.00 1.90
156 157 5.163652 GCTACTTTTCGTGAATTGCCCTAAT 60.164 40.000 0.00 0.00 0.00 1.73
157 158 4.155280 GCTACTTTTCGTGAATTGCCCTAA 59.845 41.667 0.00 0.00 0.00 2.69
158 159 3.687698 GCTACTTTTCGTGAATTGCCCTA 59.312 43.478 0.00 0.00 0.00 3.53
159 160 2.488153 GCTACTTTTCGTGAATTGCCCT 59.512 45.455 0.00 0.00 0.00 5.19
160 161 2.415491 GGCTACTTTTCGTGAATTGCCC 60.415 50.000 0.00 0.00 32.50 5.36
161 162 2.727916 CGGCTACTTTTCGTGAATTGCC 60.728 50.000 0.00 0.00 35.02 4.52
162 163 2.095919 ACGGCTACTTTTCGTGAATTGC 60.096 45.455 0.00 0.00 35.70 3.56
163 164 3.806316 ACGGCTACTTTTCGTGAATTG 57.194 42.857 0.00 0.00 35.70 2.32
169 170 3.863142 AGATACACGGCTACTTTTCGT 57.137 42.857 0.00 0.00 37.64 3.85
170 171 3.550678 GGAAGATACACGGCTACTTTTCG 59.449 47.826 0.00 0.00 0.00 3.46
171 172 4.501071 TGGAAGATACACGGCTACTTTTC 58.499 43.478 0.00 0.00 0.00 2.29
172 173 4.546829 TGGAAGATACACGGCTACTTTT 57.453 40.909 0.00 0.00 0.00 2.27
173 174 4.251268 GTTGGAAGATACACGGCTACTTT 58.749 43.478 0.00 0.00 0.00 2.66
174 175 3.369157 GGTTGGAAGATACACGGCTACTT 60.369 47.826 0.00 0.00 0.00 2.24
175 176 2.167900 GGTTGGAAGATACACGGCTACT 59.832 50.000 0.00 0.00 0.00 2.57
176 177 2.547826 GGTTGGAAGATACACGGCTAC 58.452 52.381 0.00 0.00 0.00 3.58
177 178 1.483415 GGGTTGGAAGATACACGGCTA 59.517 52.381 0.00 0.00 0.00 3.93
178 179 0.252197 GGGTTGGAAGATACACGGCT 59.748 55.000 0.00 0.00 0.00 5.52
179 180 0.252197 AGGGTTGGAAGATACACGGC 59.748 55.000 0.00 0.00 0.00 5.68
180 181 2.012051 GCAGGGTTGGAAGATACACGG 61.012 57.143 0.00 0.00 0.00 4.94
181 182 1.338674 TGCAGGGTTGGAAGATACACG 60.339 52.381 0.00 0.00 0.00 4.49
182 183 2.359900 CTGCAGGGTTGGAAGATACAC 58.640 52.381 5.57 0.00 0.00 2.90
183 184 1.340017 GCTGCAGGGTTGGAAGATACA 60.340 52.381 17.12 0.00 0.00 2.29
184 185 1.383523 GCTGCAGGGTTGGAAGATAC 58.616 55.000 17.12 0.00 0.00 2.24
185 186 0.255890 GGCTGCAGGGTTGGAAGATA 59.744 55.000 17.12 0.00 0.00 1.98
186 187 1.000396 GGCTGCAGGGTTGGAAGAT 60.000 57.895 17.12 0.00 0.00 2.40
187 188 2.436109 GGCTGCAGGGTTGGAAGA 59.564 61.111 17.12 0.00 0.00 2.87
188 189 2.677875 GGGCTGCAGGGTTGGAAG 60.678 66.667 17.12 0.00 0.00 3.46
189 190 2.713531 GAAGGGCTGCAGGGTTGGAA 62.714 60.000 17.12 0.00 0.00 3.53
190 191 3.185203 AAGGGCTGCAGGGTTGGA 61.185 61.111 17.12 0.00 0.00 3.53
191 192 2.677875 GAAGGGCTGCAGGGTTGG 60.678 66.667 17.12 0.00 0.00 3.77
192 193 0.034186 TATGAAGGGCTGCAGGGTTG 60.034 55.000 17.12 0.00 0.00 3.77
193 194 0.257039 CTATGAAGGGCTGCAGGGTT 59.743 55.000 17.12 0.00 0.00 4.11
194 195 0.621571 TCTATGAAGGGCTGCAGGGT 60.622 55.000 17.12 0.00 0.00 4.34
195 196 0.108207 CTCTATGAAGGGCTGCAGGG 59.892 60.000 17.12 0.00 0.00 4.45
196 197 0.534652 GCTCTATGAAGGGCTGCAGG 60.535 60.000 17.12 0.00 46.53 4.85
197 198 3.003740 GCTCTATGAAGGGCTGCAG 57.996 57.895 10.11 10.11 46.53 4.41
203 204 1.839994 TGGTGAAGGCTCTATGAAGGG 59.160 52.381 0.00 0.00 0.00 3.95
204 205 3.634397 TTGGTGAAGGCTCTATGAAGG 57.366 47.619 0.00 0.00 0.00 3.46
205 206 5.678107 GCAAATTGGTGAAGGCTCTATGAAG 60.678 44.000 0.00 0.00 0.00 3.02
206 207 4.158394 GCAAATTGGTGAAGGCTCTATGAA 59.842 41.667 0.00 0.00 0.00 2.57
207 208 3.696051 GCAAATTGGTGAAGGCTCTATGA 59.304 43.478 0.00 0.00 0.00 2.15
208 209 3.444742 TGCAAATTGGTGAAGGCTCTATG 59.555 43.478 0.00 0.00 0.00 2.23
209 210 3.700538 TGCAAATTGGTGAAGGCTCTAT 58.299 40.909 0.00 0.00 0.00 1.98
210 211 3.153369 TGCAAATTGGTGAAGGCTCTA 57.847 42.857 0.00 0.00 0.00 2.43
211 212 1.999648 TGCAAATTGGTGAAGGCTCT 58.000 45.000 0.00 0.00 0.00 4.09
212 213 3.323751 AATGCAAATTGGTGAAGGCTC 57.676 42.857 0.00 0.00 0.00 4.70
213 214 3.667360 GAAATGCAAATTGGTGAAGGCT 58.333 40.909 0.00 0.00 0.00 4.58
214 215 2.412770 CGAAATGCAAATTGGTGAAGGC 59.587 45.455 0.00 0.00 0.00 4.35
215 216 3.911868 TCGAAATGCAAATTGGTGAAGG 58.088 40.909 0.00 0.00 0.00 3.46
216 217 5.903764 TTTCGAAATGCAAATTGGTGAAG 57.096 34.783 6.47 0.00 0.00 3.02
217 218 6.092670 TGTTTTTCGAAATGCAAATTGGTGAA 59.907 30.769 12.12 0.00 0.00 3.18
218 219 5.582269 TGTTTTTCGAAATGCAAATTGGTGA 59.418 32.000 12.12 0.00 0.00 4.02
219 220 5.804173 TGTTTTTCGAAATGCAAATTGGTG 58.196 33.333 12.12 0.00 0.00 4.17
220 221 5.584251 ACTGTTTTTCGAAATGCAAATTGGT 59.416 32.000 12.12 5.13 0.00 3.67
221 222 5.902981 CACTGTTTTTCGAAATGCAAATTGG 59.097 36.000 12.12 4.57 0.00 3.16
222 223 5.393163 GCACTGTTTTTCGAAATGCAAATTG 59.607 36.000 22.21 15.53 0.00 2.32
223 224 5.500825 GCACTGTTTTTCGAAATGCAAATT 58.499 33.333 22.21 6.66 0.00 1.82
224 225 4.024977 GGCACTGTTTTTCGAAATGCAAAT 60.025 37.500 26.06 11.76 33.24 2.32
225 226 3.308323 GGCACTGTTTTTCGAAATGCAAA 59.692 39.130 26.06 11.10 33.24 3.68
226 227 2.863137 GGCACTGTTTTTCGAAATGCAA 59.137 40.909 26.06 11.41 33.24 4.08
227 228 2.468831 GGCACTGTTTTTCGAAATGCA 58.531 42.857 26.06 19.37 33.24 3.96
228 229 1.792367 GGGCACTGTTTTTCGAAATGC 59.208 47.619 20.05 20.05 0.00 3.56
229 230 2.050691 CGGGCACTGTTTTTCGAAATG 58.949 47.619 12.12 7.72 0.00 2.32
230 231 1.601914 GCGGGCACTGTTTTTCGAAAT 60.602 47.619 12.12 0.00 36.83 2.17
231 232 0.248702 GCGGGCACTGTTTTTCGAAA 60.249 50.000 6.47 6.47 36.83 3.46
232 233 1.357334 GCGGGCACTGTTTTTCGAA 59.643 52.632 0.00 0.00 36.83 3.71
233 234 2.548295 GGCGGGCACTGTTTTTCGA 61.548 57.895 0.00 0.00 36.83 3.71
234 235 2.050442 GGCGGGCACTGTTTTTCG 60.050 61.111 0.00 0.00 36.83 3.46
235 236 2.050442 CGGCGGGCACTGTTTTTC 60.050 61.111 0.00 0.00 36.83 2.29
236 237 2.831284 ACGGCGGGCACTGTTTTT 60.831 55.556 13.24 0.00 36.83 1.94
237 238 3.284449 GACGGCGGGCACTGTTTT 61.284 61.111 13.24 0.00 36.83 2.43
238 239 3.767630 AAGACGGCGGGCACTGTTT 62.768 57.895 13.24 0.00 36.83 2.83
239 240 4.250305 AAGACGGCGGGCACTGTT 62.250 61.111 13.24 0.00 36.83 3.16
240 241 4.681978 GAAGACGGCGGGCACTGT 62.682 66.667 13.24 0.00 36.83 3.55
241 242 3.958147 ATGAAGACGGCGGGCACTG 62.958 63.158 13.24 0.00 38.10 3.66
242 243 3.665675 GATGAAGACGGCGGGCACT 62.666 63.158 13.24 1.84 0.00 4.40
243 244 2.292794 TAGATGAAGACGGCGGGCAC 62.293 60.000 13.24 0.28 0.00 5.01
244 245 2.016393 CTAGATGAAGACGGCGGGCA 62.016 60.000 13.24 3.59 0.00 5.36
245 246 1.300233 CTAGATGAAGACGGCGGGC 60.300 63.158 13.24 2.27 0.00 6.13
246 247 0.030908 GTCTAGATGAAGACGGCGGG 59.969 60.000 13.24 0.00 36.80 6.13
247 248 0.030908 GGTCTAGATGAAGACGGCGG 59.969 60.000 13.24 0.00 45.69 6.13
248 249 0.317103 CGGTCTAGATGAAGACGGCG 60.317 60.000 4.80 4.80 45.69 6.46
249 250 0.739561 ACGGTCTAGATGAAGACGGC 59.260 55.000 10.39 0.00 45.66 5.68
250 251 3.376234 TGTTACGGTCTAGATGAAGACGG 59.624 47.826 0.00 9.26 45.69 4.79
251 252 4.142752 TGTGTTACGGTCTAGATGAAGACG 60.143 45.833 0.00 0.00 45.69 4.18
252 253 5.094134 GTGTGTTACGGTCTAGATGAAGAC 58.906 45.833 0.00 0.00 44.31 3.01
253 254 5.008331 AGTGTGTTACGGTCTAGATGAAGA 58.992 41.667 0.00 0.00 0.00 2.87
254 255 5.096169 CAGTGTGTTACGGTCTAGATGAAG 58.904 45.833 0.00 0.00 0.00 3.02
255 256 4.082408 CCAGTGTGTTACGGTCTAGATGAA 60.082 45.833 0.00 0.00 0.00 2.57
256 257 3.442625 CCAGTGTGTTACGGTCTAGATGA 59.557 47.826 0.00 0.00 0.00 2.92
257 258 3.428999 CCCAGTGTGTTACGGTCTAGATG 60.429 52.174 0.00 0.00 0.00 2.90
258 259 2.758979 CCCAGTGTGTTACGGTCTAGAT 59.241 50.000 0.00 0.00 0.00 1.98
259 260 2.165167 CCCAGTGTGTTACGGTCTAGA 58.835 52.381 0.00 0.00 0.00 2.43
260 261 1.403780 GCCCAGTGTGTTACGGTCTAG 60.404 57.143 0.00 0.00 0.00 2.43
261 262 0.604578 GCCCAGTGTGTTACGGTCTA 59.395 55.000 0.00 0.00 0.00 2.59
262 263 1.370064 GCCCAGTGTGTTACGGTCT 59.630 57.895 0.00 0.00 0.00 3.85
263 264 1.070105 TGCCCAGTGTGTTACGGTC 59.930 57.895 0.00 0.00 0.00 4.79
264 265 1.227734 GTGCCCAGTGTGTTACGGT 60.228 57.895 0.00 0.00 0.00 4.83
265 266 1.964373 GGTGCCCAGTGTGTTACGG 60.964 63.158 0.00 0.00 0.00 4.02
266 267 0.949105 GAGGTGCCCAGTGTGTTACG 60.949 60.000 0.00 0.00 0.00 3.18
267 268 0.949105 CGAGGTGCCCAGTGTGTTAC 60.949 60.000 0.00 0.00 0.00 2.50
268 269 1.369692 CGAGGTGCCCAGTGTGTTA 59.630 57.895 0.00 0.00 0.00 2.41
269 270 2.111043 CGAGGTGCCCAGTGTGTT 59.889 61.111 0.00 0.00 0.00 3.32
270 271 3.161450 ACGAGGTGCCCAGTGTGT 61.161 61.111 0.00 0.00 0.00 3.72
271 272 2.666190 CACGAGGTGCCCAGTGTG 60.666 66.667 0.00 4.80 32.59 3.82
272 273 3.161450 ACACGAGGTGCCCAGTGT 61.161 61.111 14.80 14.80 40.68 3.55
273 274 2.357517 GACACGAGGTGCCCAGTG 60.358 66.667 13.91 13.91 39.22 3.66
274 275 2.383245 CTTGACACGAGGTGCCCAGT 62.383 60.000 0.00 0.00 36.98 4.00
275 276 1.669115 CTTGACACGAGGTGCCCAG 60.669 63.158 0.00 0.00 36.98 4.45
276 277 2.425592 CTTGACACGAGGTGCCCA 59.574 61.111 0.00 0.00 36.98 5.36
277 278 3.050275 GCTTGACACGAGGTGCCC 61.050 66.667 0.00 0.00 36.98 5.36
278 279 2.029844 GAGCTTGACACGAGGTGCC 61.030 63.158 0.00 0.00 36.98 5.01
279 280 0.880278 TTGAGCTTGACACGAGGTGC 60.880 55.000 0.00 0.00 36.98 5.01
280 281 1.800805 ATTGAGCTTGACACGAGGTG 58.199 50.000 0.00 0.00 39.75 4.00
281 282 2.417719 GAATTGAGCTTGACACGAGGT 58.582 47.619 0.00 0.00 0.00 3.85
282 283 1.734465 GGAATTGAGCTTGACACGAGG 59.266 52.381 0.00 0.00 0.00 4.63
283 284 1.734465 GGGAATTGAGCTTGACACGAG 59.266 52.381 0.00 0.00 0.00 4.18
284 285 1.347707 AGGGAATTGAGCTTGACACGA 59.652 47.619 0.00 0.00 0.00 4.35
285 286 1.813513 AGGGAATTGAGCTTGACACG 58.186 50.000 0.00 0.00 0.00 4.49
286 287 3.823304 AGAAAGGGAATTGAGCTTGACAC 59.177 43.478 0.00 0.00 0.00 3.67
287 288 4.074970 GAGAAAGGGAATTGAGCTTGACA 58.925 43.478 0.00 0.00 0.00 3.58
288 289 4.331108 AGAGAAAGGGAATTGAGCTTGAC 58.669 43.478 0.00 0.00 0.00 3.18
289 290 4.647564 AGAGAAAGGGAATTGAGCTTGA 57.352 40.909 0.00 0.00 0.00 3.02
290 291 5.718724 AAAGAGAAAGGGAATTGAGCTTG 57.281 39.130 0.00 0.00 0.00 4.01
291 292 6.547402 ACTAAAGAGAAAGGGAATTGAGCTT 58.453 36.000 0.00 0.00 0.00 3.74
292 293 6.133253 ACTAAAGAGAAAGGGAATTGAGCT 57.867 37.500 0.00 0.00 0.00 4.09
293 294 6.127869 GGAACTAAAGAGAAAGGGAATTGAGC 60.128 42.308 0.00 0.00 0.00 4.26
294 295 6.092807 CGGAACTAAAGAGAAAGGGAATTGAG 59.907 42.308 0.00 0.00 0.00 3.02
295 296 5.938125 CGGAACTAAAGAGAAAGGGAATTGA 59.062 40.000 0.00 0.00 0.00 2.57
296 297 5.705905 ACGGAACTAAAGAGAAAGGGAATTG 59.294 40.000 0.00 0.00 0.00 2.32
297 298 5.877491 ACGGAACTAAAGAGAAAGGGAATT 58.123 37.500 0.00 0.00 0.00 2.17
298 299 5.500546 ACGGAACTAAAGAGAAAGGGAAT 57.499 39.130 0.00 0.00 0.00 3.01
299 300 4.968971 ACGGAACTAAAGAGAAAGGGAA 57.031 40.909 0.00 0.00 0.00 3.97
300 301 4.591924 AGAACGGAACTAAAGAGAAAGGGA 59.408 41.667 0.00 0.00 0.00 4.20
301 302 4.691216 CAGAACGGAACTAAAGAGAAAGGG 59.309 45.833 0.00 0.00 0.00 3.95
302 303 5.539048 TCAGAACGGAACTAAAGAGAAAGG 58.461 41.667 0.00 0.00 0.00 3.11
303 304 5.119434 GCTCAGAACGGAACTAAAGAGAAAG 59.881 44.000 0.00 0.00 0.00 2.62
304 305 4.989168 GCTCAGAACGGAACTAAAGAGAAA 59.011 41.667 0.00 0.00 0.00 2.52
305 306 4.557205 GCTCAGAACGGAACTAAAGAGAA 58.443 43.478 0.00 0.00 0.00 2.87
306 307 3.366070 CGCTCAGAACGGAACTAAAGAGA 60.366 47.826 0.00 0.00 0.00 3.10
307 308 2.917971 CGCTCAGAACGGAACTAAAGAG 59.082 50.000 0.00 0.00 0.00 2.85
308 309 2.942710 CGCTCAGAACGGAACTAAAGA 58.057 47.619 0.00 0.00 0.00 2.52
326 327 5.679792 CGTTTTACAAATAATAGCCTTCCGC 59.320 40.000 0.00 0.00 37.98 5.54
327 328 5.679792 GCGTTTTACAAATAATAGCCTTCCG 59.320 40.000 0.00 0.00 0.00 4.30
328 329 5.975344 GGCGTTTTACAAATAATAGCCTTCC 59.025 40.000 0.00 0.00 34.36 3.46
329 330 6.557110 TGGCGTTTTACAAATAATAGCCTTC 58.443 36.000 4.27 0.00 36.35 3.46
330 331 6.518208 TGGCGTTTTACAAATAATAGCCTT 57.482 33.333 4.27 0.00 36.35 4.35
331 332 6.327154 GTTGGCGTTTTACAAATAATAGCCT 58.673 36.000 4.27 0.00 36.35 4.58
332 333 5.228427 CGTTGGCGTTTTACAAATAATAGCC 59.772 40.000 0.00 0.00 36.13 3.93
333 334 6.238032 CGTTGGCGTTTTACAAATAATAGC 57.762 37.500 0.00 0.00 0.00 2.97
349 350 1.008995 CTTTGGGTCAACGTTGGCG 60.009 57.895 27.02 9.30 44.93 5.69
350 351 1.299850 GCTTTGGGTCAACGTTGGC 60.300 57.895 27.02 25.76 0.00 4.52
351 352 1.362355 GGCTTTGGGTCAACGTTGG 59.638 57.895 27.02 10.89 0.00 3.77
352 353 0.248866 GTGGCTTTGGGTCAACGTTG 60.249 55.000 22.35 22.35 0.00 4.10
353 354 0.681564 TGTGGCTTTGGGTCAACGTT 60.682 50.000 0.00 0.00 0.00 3.99
473 474 0.394488 TGTGCCGGTTTGGACTTTGA 60.394 50.000 1.90 0.00 42.00 2.69
530 532 2.166664 GCCGATCTGGATATGGTAGACC 59.833 54.545 7.64 0.00 42.00 3.85
736 751 4.436998 GCGTCCCGGTCAGGTCAG 62.437 72.222 0.00 0.00 38.74 3.51
1577 1628 0.765903 AGGGATCAGGTGGCATCGAT 60.766 55.000 5.06 5.06 0.00 3.59
1615 1666 2.561478 ACTCCGGCAACAAACAGTAT 57.439 45.000 0.00 0.00 0.00 2.12
1719 1796 4.892934 TCTGACAAACCAAACAGGCTTATT 59.107 37.500 0.00 0.00 43.14 1.40
1722 1799 2.427095 GTCTGACAAACCAAACAGGCTT 59.573 45.455 2.24 0.00 43.14 4.35
1724 1801 1.268539 CGTCTGACAAACCAAACAGGC 60.269 52.381 8.73 0.00 43.14 4.85
1725 1802 2.285083 TCGTCTGACAAACCAAACAGG 58.715 47.619 8.73 0.00 45.67 4.00
1775 1859 7.754851 TTCAGTGACACTAGAATGTACTGTA 57.245 36.000 8.02 0.00 36.56 2.74
1776 1860 6.650427 TTCAGTGACACTAGAATGTACTGT 57.350 37.500 8.02 0.00 36.56 3.55
1777 1861 7.600375 ACATTTCAGTGACACTAGAATGTACTG 59.400 37.037 29.14 16.32 39.23 2.74
1778 1862 7.671302 ACATTTCAGTGACACTAGAATGTACT 58.329 34.615 29.14 16.17 39.23 2.73
1779 1863 7.891183 ACATTTCAGTGACACTAGAATGTAC 57.109 36.000 29.14 0.00 39.23 2.90
1870 1955 7.307278 CGAATCAGAATTGCAAACCATTTTCAA 60.307 33.333 1.71 0.00 0.00 2.69
1903 1988 3.870299 GCCAGTTTCTCTTCAAGGGGTAG 60.870 52.174 0.00 0.00 0.00 3.18
2016 2101 4.986622 GCTTATGCTCTACCAAGGTTTTG 58.013 43.478 0.00 0.00 36.03 2.44
2211 2296 3.191162 GCAAGTGCCTAATGTCATGAACA 59.809 43.478 0.00 0.00 37.40 3.18
2241 2326 8.078596 GTCAAGTTGCTTGTAAGATTTCTCAAT 58.921 33.333 8.48 0.00 41.66 2.57
2487 2572 1.770294 GTTCCTCCACACCCAACAAA 58.230 50.000 0.00 0.00 0.00 2.83
2717 2802 9.855361 CGACAGACTAAGCAAATAATAGAAATG 57.145 33.333 0.00 0.00 0.00 2.32
2844 2931 6.534475 AAGCCATCAAATGACACACATTAT 57.466 33.333 0.00 0.00 46.90 1.28
2916 3003 8.163408 TGGCCATACAGTTGAGCTAATATTTAT 58.837 33.333 0.00 0.00 0.00 1.40
2929 3016 5.895636 TGAATTACTTGGCCATACAGTTG 57.104 39.130 13.66 0.00 0.00 3.16
2956 3043 3.620488 TCATTCCAGTGGATACTTTGGC 58.380 45.455 14.00 0.00 39.62 4.52
2968 3055 4.908601 TTACTCACCACATCATTCCAGT 57.091 40.909 0.00 0.00 0.00 4.00
2993 3081 9.881529 TGAAAAATTACTTTACCACGTCAATAC 57.118 29.630 0.00 0.00 0.00 1.89
3211 3299 7.029563 GCACACGAAAGAATGGATTAAGAAAT 58.970 34.615 0.00 0.00 0.00 2.17
3246 3334 5.503927 AGACTGCTGATTAATGTGGTGAAT 58.496 37.500 0.00 0.00 0.00 2.57
3349 3437 1.972660 ATCGCCTACCCTGACTTGCC 61.973 60.000 0.00 0.00 0.00 4.52
3436 3524 1.379044 CATGTGGTTCAGGAGGGCC 60.379 63.158 0.00 0.00 0.00 5.80
3679 3767 5.594926 TCACTGTCACTGCTATCATGTATG 58.405 41.667 0.00 0.00 0.00 2.39
3682 3770 4.541973 TTCACTGTCACTGCTATCATGT 57.458 40.909 0.00 0.00 0.00 3.21
3888 3976 5.957771 ATCAACTGGCTCTCTACCAATTA 57.042 39.130 0.00 0.00 36.56 1.40
4101 4189 2.490903 GGTTCAACTCCGCTAGTAGTCA 59.509 50.000 0.00 0.00 37.50 3.41
4225 4313 1.202463 CCAGGGTCAGATAGTGCTTCG 60.202 57.143 0.00 0.00 0.00 3.79
4232 4320 4.081406 CTCTGATCTCCAGGGTCAGATAG 58.919 52.174 15.99 6.49 45.10 2.08
4339 4427 7.946207 TCTCCACACAGATATCAAATAGAGAC 58.054 38.462 5.32 0.00 0.00 3.36
4345 4433 7.146715 AGGAATCTCCACACAGATATCAAAT 57.853 36.000 5.32 0.00 39.61 2.32
4373 4461 6.018425 CGACTATTTTCTCTGATCATGGTTGG 60.018 42.308 0.00 0.00 0.00 3.77
4447 4535 2.025605 AGCTGAATTCTCATCAGGGCAA 60.026 45.455 7.05 0.00 43.60 4.52
4608 4696 1.148310 CGAAACGAGGCTGACATGTT 58.852 50.000 0.00 0.00 0.00 2.71
4739 4827 6.739331 TTGTTCAAATTACCAAGTCCCAAT 57.261 33.333 0.00 0.00 0.00 3.16
4740 4828 6.739331 ATTGTTCAAATTACCAAGTCCCAA 57.261 33.333 0.00 0.00 0.00 4.12
4753 4841 6.014840 ACCAGATCAAGCTGAATTGTTCAAAT 60.015 34.615 0.00 0.00 39.58 2.32
4811 4899 6.257849 GGTATAGACGCAATTCAGTTTGATCA 59.742 38.462 0.00 0.00 0.00 2.92
4848 4937 0.759959 TGACTGGCCTACAACCGAAA 59.240 50.000 3.32 0.00 0.00 3.46
4878 4967 9.377312 GAACTCTAGATTCATTCTTAGTGCTTT 57.623 33.333 0.00 0.00 35.79 3.51
4896 4985 2.969628 ATGCCAGTTCGGAACTCTAG 57.030 50.000 20.03 12.81 40.46 2.43
4898 4987 6.859112 ATATATATGCCAGTTCGGAACTCT 57.141 37.500 20.03 8.35 40.46 3.24
4936 5025 6.579666 TTCATCAATTTCAGAAACAGAGGG 57.420 37.500 0.00 0.00 0.00 4.30
4970 5059 2.031333 GCCTGAGCAGTTTCAGTCAAAG 60.031 50.000 2.73 0.00 42.41 2.77
5029 5121 7.182761 AGAAGCGTTCAAATCAAATAATCTCG 58.817 34.615 1.58 0.00 0.00 4.04
5062 5154 4.780021 AGGATACACAAACTGAGGAGACAT 59.220 41.667 0.00 0.00 41.41 3.06
5077 5250 3.952967 AGGACGACTTAGGAAGGATACAC 59.047 47.826 0.00 0.00 41.41 2.90
5082 5255 4.221482 GGTAAAAGGACGACTTAGGAAGGA 59.779 45.833 0.00 0.00 38.85 3.36
5090 5263 4.721132 TCAAATGGGTAAAAGGACGACTT 58.279 39.130 0.00 0.00 42.52 3.01
5091 5264 4.202430 ACTCAAATGGGTAAAAGGACGACT 60.202 41.667 0.00 0.00 0.00 4.18
5092 5265 4.070009 ACTCAAATGGGTAAAAGGACGAC 58.930 43.478 0.00 0.00 0.00 4.34
5093 5266 4.360951 ACTCAAATGGGTAAAAGGACGA 57.639 40.909 0.00 0.00 0.00 4.20
5094 5267 5.447624 AAACTCAAATGGGTAAAAGGACG 57.552 39.130 0.00 0.00 0.00 4.79
5095 5268 6.811954 TCAAAACTCAAATGGGTAAAAGGAC 58.188 36.000 0.00 0.00 0.00 3.85
5096 5269 6.462347 GCTCAAAACTCAAATGGGTAAAAGGA 60.462 38.462 0.00 0.00 0.00 3.36
5106 5288 7.935338 ACAATACAAGCTCAAAACTCAAATG 57.065 32.000 0.00 0.00 0.00 2.32
5107 5289 7.042523 GCAACAATACAAGCTCAAAACTCAAAT 60.043 33.333 0.00 0.00 0.00 2.32
5138 5321 2.414138 ACAGCGTAGTTTAACAATCGGC 59.586 45.455 0.00 0.00 0.00 5.54
5156 5339 7.490962 TGATTACAACTAAGGTTCAACACAG 57.509 36.000 0.00 0.00 32.73 3.66
5254 5526 8.836735 TCTTTTTCCTCACTCTTTATTATCCCT 58.163 33.333 0.00 0.00 0.00 4.20
5257 5529 9.974750 CGTTCTTTTTCCTCACTCTTTATTATC 57.025 33.333 0.00 0.00 0.00 1.75
5258 5530 9.503399 ACGTTCTTTTTCCTCACTCTTTATTAT 57.497 29.630 0.00 0.00 0.00 1.28
5346 5635 7.229306 CCATAAAACTGATGCCATGTAGTACAT 59.771 37.037 10.10 10.10 39.91 2.29
5347 5636 6.542005 CCATAAAACTGATGCCATGTAGTACA 59.458 38.462 5.24 5.24 0.00 2.90
5348 5637 6.513393 GCCATAAAACTGATGCCATGTAGTAC 60.513 42.308 0.00 0.00 0.00 2.73
5349 5638 5.530915 GCCATAAAACTGATGCCATGTAGTA 59.469 40.000 0.00 0.00 0.00 1.82
5350 5639 4.339247 GCCATAAAACTGATGCCATGTAGT 59.661 41.667 0.00 0.00 0.00 2.73
5351 5640 4.338964 TGCCATAAAACTGATGCCATGTAG 59.661 41.667 0.00 0.00 0.00 2.74
5352 5641 4.276642 TGCCATAAAACTGATGCCATGTA 58.723 39.130 0.00 0.00 0.00 2.29
5353 5642 3.098377 TGCCATAAAACTGATGCCATGT 58.902 40.909 0.00 0.00 0.00 3.21
5354 5643 3.804786 TGCCATAAAACTGATGCCATG 57.195 42.857 0.00 0.00 0.00 3.66
5355 5644 3.707611 ACATGCCATAAAACTGATGCCAT 59.292 39.130 0.00 0.00 0.00 4.40
5356 5645 3.098377 ACATGCCATAAAACTGATGCCA 58.902 40.909 0.00 0.00 0.00 4.92
5358 5647 7.775397 AATTTACATGCCATAAAACTGATGC 57.225 32.000 0.00 0.00 0.00 3.91
5392 5681 9.905713 AGACTTGGAGCAATAGTTATTTTATCA 57.094 29.630 0.00 0.00 0.00 2.15
5485 5782 1.414181 AGCTAGCCGCACTTATCATGT 59.586 47.619 12.13 0.00 42.61 3.21
5490 5787 2.403252 AACAAGCTAGCCGCACTTAT 57.597 45.000 12.13 0.00 42.61 1.73
5497 5794 1.160137 AGAAGCAAACAAGCTAGCCG 58.840 50.000 12.13 5.56 45.89 5.52
5528 5825 7.400439 CATTGTGGAATGGAGTGAGGATATAT 58.600 38.462 0.00 0.00 36.12 0.86
5532 5829 3.894759 CATTGTGGAATGGAGTGAGGAT 58.105 45.455 0.00 0.00 36.12 3.24
5533 5830 2.618816 GCATTGTGGAATGGAGTGAGGA 60.619 50.000 0.00 0.00 39.62 3.71
5534 5831 1.747355 GCATTGTGGAATGGAGTGAGG 59.253 52.381 0.00 0.00 39.62 3.86
5535 5832 2.439409 TGCATTGTGGAATGGAGTGAG 58.561 47.619 0.00 0.00 39.62 3.51
5536 5833 2.583024 TGCATTGTGGAATGGAGTGA 57.417 45.000 0.00 0.00 39.62 3.41
5540 5837 0.889994 GCACTGCATTGTGGAATGGA 59.110 50.000 5.89 0.00 39.62 3.41
5541 5838 0.604073 TGCACTGCATTGTGGAATGG 59.396 50.000 5.89 0.00 39.62 3.16
5542 5839 1.000052 TGTGCACTGCATTGTGGAATG 60.000 47.619 19.41 0.00 41.91 2.67
5543 5840 1.330234 TGTGCACTGCATTGTGGAAT 58.670 45.000 19.41 0.00 41.91 3.01
5544 5841 1.330234 ATGTGCACTGCATTGTGGAA 58.670 45.000 19.41 0.00 41.91 3.53
5545 5842 1.330234 AATGTGCACTGCATTGTGGA 58.670 45.000 19.41 0.82 41.91 4.02
5546 5843 2.157834 AAATGTGCACTGCATTGTGG 57.842 45.000 19.41 0.00 41.91 4.17
5547 5844 3.904571 ACTAAATGTGCACTGCATTGTG 58.095 40.909 19.41 3.80 41.91 3.33
5548 5845 4.279169 AGAACTAAATGTGCACTGCATTGT 59.721 37.500 19.41 7.22 41.91 2.71
5549 5846 4.801891 AGAACTAAATGTGCACTGCATTG 58.198 39.130 19.41 0.00 41.91 2.82
5550 5847 4.763793 AGAGAACTAAATGTGCACTGCATT 59.236 37.500 19.41 6.81 41.91 3.56
5551 5848 4.155462 CAGAGAACTAAATGTGCACTGCAT 59.845 41.667 19.41 0.00 41.91 3.96
5552 5849 3.499537 CAGAGAACTAAATGTGCACTGCA 59.500 43.478 19.41 0.00 36.40 4.41
5553 5850 3.748048 TCAGAGAACTAAATGTGCACTGC 59.252 43.478 19.41 0.00 41.07 4.40
5554 5851 5.929697 TTCAGAGAACTAAATGTGCACTG 57.070 39.130 19.41 3.11 42.17 3.66
5555 5852 6.058183 ACTTTCAGAGAACTAAATGTGCACT 58.942 36.000 19.41 0.00 0.00 4.40
5556 5853 6.305693 ACTTTCAGAGAACTAAATGTGCAC 57.694 37.500 10.75 10.75 0.00 4.57
5557 5854 6.942532 AACTTTCAGAGAACTAAATGTGCA 57.057 33.333 0.00 0.00 0.00 4.57
5558 5855 9.730420 TTTTAACTTTCAGAGAACTAAATGTGC 57.270 29.630 0.00 0.00 0.00 4.57
5565 5862 9.832445 AGACATGTTTTAACTTTCAGAGAACTA 57.168 29.630 0.00 0.00 0.00 2.24
5566 5863 8.738645 AGACATGTTTTAACTTTCAGAGAACT 57.261 30.769 0.00 0.00 0.00 3.01
5569 5866 9.778741 ACATAGACATGTTTTAACTTTCAGAGA 57.221 29.630 0.00 0.00 42.98 3.10
5616 5913 9.974980 TGCATCTAATGATAGTGAACGTTTATA 57.025 29.630 0.46 0.00 0.00 0.98
5617 5914 8.887036 TGCATCTAATGATAGTGAACGTTTAT 57.113 30.769 0.46 0.00 0.00 1.40
5618 5915 8.887036 ATGCATCTAATGATAGTGAACGTTTA 57.113 30.769 0.46 0.00 0.00 2.01
5619 5916 7.495606 TGATGCATCTAATGATAGTGAACGTTT 59.504 33.333 26.32 0.00 0.00 3.60
5620 5917 6.986231 TGATGCATCTAATGATAGTGAACGTT 59.014 34.615 26.32 0.00 0.00 3.99
5621 5918 6.515832 TGATGCATCTAATGATAGTGAACGT 58.484 36.000 26.32 0.00 0.00 3.99
5622 5919 7.330208 TCATGATGCATCTAATGATAGTGAACG 59.670 37.037 26.32 0.00 0.00 3.95
5623 5920 8.543862 TCATGATGCATCTAATGATAGTGAAC 57.456 34.615 26.32 0.00 0.00 3.18
5624 5921 9.216117 CTTCATGATGCATCTAATGATAGTGAA 57.784 33.333 26.32 17.85 0.00 3.18
5625 5922 8.373220 ACTTCATGATGCATCTAATGATAGTGA 58.627 33.333 26.32 11.73 0.00 3.41
5626 5923 8.443937 CACTTCATGATGCATCTAATGATAGTG 58.556 37.037 28.64 28.64 35.04 2.74
5627 5924 8.155510 ACACTTCATGATGCATCTAATGATAGT 58.844 33.333 26.32 23.65 0.00 2.12
5628 5925 8.549338 ACACTTCATGATGCATCTAATGATAG 57.451 34.615 26.32 23.18 0.00 2.08
5629 5926 9.428097 GTACACTTCATGATGCATCTAATGATA 57.572 33.333 26.32 13.77 0.00 2.15
5630 5927 8.155510 AGTACACTTCATGATGCATCTAATGAT 58.844 33.333 26.32 14.62 0.00 2.45
5631 5928 7.503549 AGTACACTTCATGATGCATCTAATGA 58.496 34.615 26.32 22.94 0.00 2.57
5632 5929 7.725818 AGTACACTTCATGATGCATCTAATG 57.274 36.000 26.32 21.20 0.00 1.90
5633 5930 8.743085 AAAGTACACTTCATGATGCATCTAAT 57.257 30.769 26.32 10.77 34.61 1.73
5634 5931 8.565896 AAAAGTACACTTCATGATGCATCTAA 57.434 30.769 26.32 16.38 34.61 2.10
5635 5932 9.098355 GTAAAAGTACACTTCATGATGCATCTA 57.902 33.333 26.32 13.82 34.61 1.98
5636 5933 7.607607 TGTAAAAGTACACTTCATGATGCATCT 59.392 33.333 26.32 10.21 35.23 2.90
5637 5934 7.751732 TGTAAAAGTACACTTCATGATGCATC 58.248 34.615 20.14 20.14 35.23 3.91
5638 5935 7.686438 TGTAAAAGTACACTTCATGATGCAT 57.314 32.000 0.00 0.00 35.23 3.96
5639 5936 7.503521 TTGTAAAAGTACACTTCATGATGCA 57.496 32.000 8.45 0.00 40.00 3.96
5640 5937 8.970691 AATTGTAAAAGTACACTTCATGATGC 57.029 30.769 8.45 0.00 40.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.