Multiple sequence alignment - TraesCS3D01G297700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G297700 chr3D 100.000 6656 0 0 1 6656 411080161 411073506 0.000000e+00 12292.0
1 TraesCS3D01G297700 chr3D 100.000 333 0 0 7079 7411 411073083 411072751 3.800000e-172 616.0
2 TraesCS3D01G297700 chr3D 90.500 200 17 2 4329 4527 51690223 51690025 5.700000e-66 263.0
3 TraesCS3D01G297700 chr3D 93.082 159 11 0 3778 3936 448487156 448487314 4.470000e-57 233.0
4 TraesCS3D01G297700 chr3D 83.590 195 24 7 4049 4240 51690648 51690459 7.640000e-40 176.0
5 TraesCS3D01G297700 chr3D 83.465 127 20 1 4065 4190 520705412 520705538 4.700000e-22 117.0
6 TraesCS3D01G297700 chr3A 95.738 3191 79 28 626 3774 540043442 540046617 0.000000e+00 5086.0
7 TraesCS3D01G297700 chr3A 95.427 2121 59 18 4521 6610 540046608 540048721 0.000000e+00 3345.0
8 TraesCS3D01G297700 chr3A 91.680 637 38 7 1 623 540041556 540042191 0.000000e+00 869.0
9 TraesCS3D01G297700 chr3A 97.735 309 4 3 7104 7411 540049521 540049827 5.090000e-146 529.0
10 TraesCS3D01G297700 chr3A 91.071 168 14 1 3774 3941 629034117 629034283 7.480000e-55 226.0
11 TraesCS3D01G297700 chr3B 94.349 2743 97 29 896 3598 537694156 537691432 0.000000e+00 4154.0
12 TraesCS3D01G297700 chr3B 94.442 2087 73 22 4521 6587 537690927 537688864 0.000000e+00 3171.0
13 TraesCS3D01G297700 chr3B 89.171 868 71 7 1 847 537696217 537695352 0.000000e+00 1061.0
14 TraesCS3D01G297700 chr3B 97.423 194 4 1 3582 3774 537691111 537690918 5.540000e-86 329.0
15 TraesCS3D01G297700 chr4D 81.405 484 66 19 3774 4246 49803785 49803315 2.520000e-99 374.0
16 TraesCS3D01G297700 chr4D 83.626 171 20 8 4065 4233 296701513 296701349 3.580000e-33 154.0
17 TraesCS3D01G297700 chr6D 80.000 485 67 25 3773 4243 141277161 141277629 1.540000e-86 331.0
18 TraesCS3D01G297700 chr1A 87.347 245 25 5 4278 4522 567959764 567959526 7.320000e-70 276.0
19 TraesCS3D01G297700 chr5A 87.295 244 25 5 4278 4521 536290083 536290320 2.630000e-69 274.0
20 TraesCS3D01G297700 chr5A 83.740 123 16 3 290 410 653661475 653661595 6.080000e-21 113.0
21 TraesCS3D01G297700 chr5A 86.885 61 6 2 112 171 54470712 54470653 4.800000e-07 67.6
22 TraesCS3D01G297700 chr2A 86.066 244 27 6 4278 4521 725256321 725256085 9.540000e-64 255.0
23 TraesCS3D01G297700 chr2A 92.121 165 9 4 3775 3936 119325310 119325473 5.780000e-56 230.0
24 TraesCS3D01G297700 chr7D 84.942 259 29 10 4278 4530 177178553 177178299 3.430000e-63 254.0
25 TraesCS3D01G297700 chr7D 92.899 169 12 0 3773 3941 279205291 279205459 5.740000e-61 246.0
26 TraesCS3D01G297700 chr7A 85.366 246 31 4 4278 4523 270195955 270196195 4.440000e-62 250.0
27 TraesCS3D01G297700 chr7A 85.366 246 27 8 4278 4523 312357615 312357379 5.740000e-61 246.0
28 TraesCS3D01G297700 chr7A 84.959 246 27 8 4278 4523 312303904 312303669 2.670000e-59 241.0
29 TraesCS3D01G297700 chr7A 84.615 247 30 6 4276 4521 479854898 479855137 9.610000e-59 239.0
30 TraesCS3D01G297700 chr6A 91.716 169 12 2 3774 3941 256570784 256570951 4.470000e-57 233.0
31 TraesCS3D01G297700 chr4A 91.667 168 12 2 3775 3941 554842292 554842458 1.610000e-56 231.0
32 TraesCS3D01G297700 chr4A 91.124 169 15 0 3773 3941 559939667 559939835 5.780000e-56 230.0
33 TraesCS3D01G297700 chr4A 77.348 362 54 18 3879 4234 648885637 648885976 9.820000e-44 189.0
34 TraesCS3D01G297700 chrUn 76.151 478 86 20 3775 4243 330920302 330920760 7.480000e-55 226.0
35 TraesCS3D01G297700 chrUn 89.062 128 12 2 4118 4243 10094938 10094811 2.770000e-34 158.0
36 TraesCS3D01G297700 chrUn 78.488 172 23 10 411 575 13021578 13021414 4.730000e-17 100.0
37 TraesCS3D01G297700 chr2B 85.606 132 16 3 4111 4240 762850874 762851004 1.300000e-27 135.0
38 TraesCS3D01G297700 chr1D 86.047 86 9 3 4160 4243 459409681 459409765 1.020000e-13 89.8
39 TraesCS3D01G297700 chr1B 90.385 52 3 2 7081 7130 492277267 492277216 4.800000e-07 67.6
40 TraesCS3D01G297700 chr1B 82.667 75 10 3 269 341 583307424 583307497 6.210000e-06 63.9
41 TraesCS3D01G297700 chr1B 86.792 53 7 0 289 341 583270796 583270848 8.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G297700 chr3D 411072751 411080161 7410 True 6454.00 12292 100.00000 1 7411 2 chr3D.!!$R2 7410
1 TraesCS3D01G297700 chr3D 51690025 51690648 623 True 219.50 263 87.04500 4049 4527 2 chr3D.!!$R1 478
2 TraesCS3D01G297700 chr3A 540041556 540049827 8271 False 2457.25 5086 95.14500 1 7411 4 chr3A.!!$F2 7410
3 TraesCS3D01G297700 chr3B 537688864 537696217 7353 True 2178.75 4154 93.84625 1 6587 4 chr3B.!!$R1 6586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 97 0.327000 AGCATAGGAAGGTGGAGGCT 60.327 55.000 0.00 0.00 0.00 4.58 F
938 3367 0.393808 TCTACATTCCGGCCCAAAGC 60.394 55.000 0.00 0.00 42.60 3.51 F
1820 4265 0.955905 GGAGGATGAGTCGGAGCTAC 59.044 60.000 0.00 0.00 0.00 3.58 F
3267 5747 1.384643 CCTGGCCCTTACCCTAGCT 60.385 63.158 0.00 0.00 0.00 3.32 F
3872 6695 0.179001 ACCCCCAACTCTCAAAACCG 60.179 55.000 0.00 0.00 0.00 4.44 F
4245 7070 0.107897 AACTGTTCGTGCACTGTCCA 60.108 50.000 16.19 5.31 0.00 4.02 F
4248 7073 0.179059 TGTTCGTGCACTGTCCACAT 60.179 50.000 16.19 0.00 32.85 3.21 F
5602 8589 0.603975 AGTTTCAGCCTTCGTCTGCC 60.604 55.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 3636 0.464452 GGTTGTGGGGATACGAGAGG 59.536 60.000 0.00 0.00 37.60 3.69 R
1912 4357 1.539929 CGATCATGGACCTGAGGAAGC 60.540 57.143 4.99 0.00 0.00 3.86 R
3791 6614 0.618968 AGGGCTAGAGTTGAGGGGTG 60.619 60.000 0.00 0.00 0.00 4.61 R
4163 6986 0.108804 TCCGATGTCCGAACAAGCTC 60.109 55.000 0.00 0.00 39.30 4.09 R
5807 8794 2.097825 ACCATCCTGAAATCTGCAAGC 58.902 47.619 0.00 0.00 0.00 4.01 R
5965 8952 0.329261 TCTAGCAGCATTGGCCAACT 59.671 50.000 23.27 15.53 42.56 3.16 R
6020 9007 1.746615 CAGCCGGTCCATGAACTGG 60.747 63.158 5.38 5.38 46.74 4.00 R
6615 9624 0.181114 TGCGATCCCAAGGAATCTGG 59.819 55.000 0.00 0.00 34.34 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 1.267261 CGTCGAGAAGAGGACTGTGTT 59.733 52.381 0.00 0.00 36.91 3.32
93 97 0.327000 AGCATAGGAAGGTGGAGGCT 60.327 55.000 0.00 0.00 0.00 4.58
107 111 0.459489 GAGGCTGACGAGCTCAAGAT 59.541 55.000 15.40 0.00 45.44 2.40
130 134 5.901552 TGACCGAAGAAAAAGCAGAAAAAT 58.098 33.333 0.00 0.00 0.00 1.82
131 135 5.748152 TGACCGAAGAAAAAGCAGAAAAATG 59.252 36.000 0.00 0.00 0.00 2.32
171 177 1.268335 GGTCTCGACGCAAAGCAAAAA 60.268 47.619 0.00 0.00 0.00 1.94
212 218 4.911610 CACGATGAATTGTTGGTGAAGAAC 59.088 41.667 0.00 0.00 0.00 3.01
214 220 5.241506 ACGATGAATTGTTGGTGAAGAACAT 59.758 36.000 0.00 0.00 33.41 2.71
309 315 3.214328 GCATCGGAGAATTTATGGGTGT 58.786 45.455 0.00 0.00 43.58 4.16
359 365 3.054508 TGGTAACATGATGAGTGCCATGA 60.055 43.478 0.00 0.00 46.17 3.07
363 369 2.770232 ACATGATGAGTGCCATGAGAGA 59.230 45.455 0.00 0.00 41.88 3.10
381 387 7.704578 TGAGAGATGGCTATGGTAGTATAAC 57.295 40.000 0.00 0.00 0.00 1.89
392 398 4.217510 TGGTAGTATAACGGGTGCTATGT 58.782 43.478 0.00 0.00 0.00 2.29
533 539 8.728833 GTGAAGAGAAAGAAGTCAATGATCATT 58.271 33.333 15.36 15.36 0.00 2.57
567 573 2.869801 TGTTCACAACGAGACCAATGTC 59.130 45.455 0.00 0.00 42.09 3.06
605 626 8.409358 AATGAAAATTGGTAGGCTATGATACC 57.591 34.615 0.00 0.00 41.60 2.73
657 1926 5.335661 GGAGACAACAAATTTTGATACGGCT 60.336 40.000 15.81 7.79 0.00 5.52
681 1950 2.493278 CCTGTTTTAGGGCATCTGTTGG 59.507 50.000 0.00 0.00 43.33 3.77
938 3367 0.393808 TCTACATTCCGGCCCAAAGC 60.394 55.000 0.00 0.00 42.60 3.51
955 3384 5.986741 CCCAAAGCGTATTTTTGTTAAAGGT 59.013 36.000 0.00 0.00 34.51 3.50
1618 4055 4.547859 ATGCGGAAGGATGCTGTC 57.452 55.556 0.00 0.00 42.12 3.51
1755 4200 5.742063 TCTGCATCTGTTCTTGATGATTCT 58.258 37.500 7.77 0.00 42.68 2.40
1820 4265 0.955905 GGAGGATGAGTCGGAGCTAC 59.044 60.000 0.00 0.00 0.00 3.58
1984 4429 4.890158 TGAAACTGATGAGGAGCTTACA 57.110 40.909 0.00 0.00 0.00 2.41
2034 4482 7.173907 TGTTGAGAAAAAGATGAAGGATGAGTC 59.826 37.037 0.00 0.00 0.00 3.36
2035 4483 6.772605 TGAGAAAAAGATGAAGGATGAGTCA 58.227 36.000 0.00 0.00 0.00 3.41
2393 4860 4.799564 TTGGCATGGTATTTCAGGTTTC 57.200 40.909 0.00 0.00 0.00 2.78
2395 4862 3.096092 GGCATGGTATTTCAGGTTTCCA 58.904 45.455 0.00 0.00 0.00 3.53
2396 4863 3.131046 GGCATGGTATTTCAGGTTTCCAG 59.869 47.826 0.00 0.00 0.00 3.86
2397 4864 3.763897 GCATGGTATTTCAGGTTTCCAGT 59.236 43.478 0.00 0.00 0.00 4.00
2629 5100 4.460263 TGAAGTTAGTGTGACCATGCTTT 58.540 39.130 0.00 0.00 0.00 3.51
2863 5343 4.514441 ACTGATCAGTTCTTGTGAGCTTTG 59.486 41.667 22.89 0.00 38.83 2.77
3267 5747 1.384643 CCTGGCCCTTACCCTAGCT 60.385 63.158 0.00 0.00 0.00 3.32
3276 5756 3.901844 CCCTTACCCTAGCTAGCAATACA 59.098 47.826 18.83 0.00 0.00 2.29
3372 5852 5.812642 CCCGCTTGCTATCTAGTATTTATGG 59.187 44.000 0.00 0.00 0.00 2.74
3373 5853 6.351033 CCCGCTTGCTATCTAGTATTTATGGA 60.351 42.308 0.00 0.00 0.00 3.41
3541 6023 8.532186 AATTGTTGGCATGGATGTATAAGTAA 57.468 30.769 0.00 0.00 0.00 2.24
3621 6443 7.440523 ACTGAAGAAAAATACTGCTGTTAGG 57.559 36.000 0.09 0.00 0.00 2.69
3764 6587 2.829741 TTGTGGCCCTTTTTACATGC 57.170 45.000 0.00 0.00 0.00 4.06
3765 6588 2.008242 TGTGGCCCTTTTTACATGCT 57.992 45.000 0.00 0.00 0.00 3.79
3766 6589 3.162147 TGTGGCCCTTTTTACATGCTA 57.838 42.857 0.00 0.00 0.00 3.49
3767 6590 3.707316 TGTGGCCCTTTTTACATGCTAT 58.293 40.909 0.00 0.00 0.00 2.97
3768 6591 3.699038 TGTGGCCCTTTTTACATGCTATC 59.301 43.478 0.00 0.00 0.00 2.08
3769 6592 3.954258 GTGGCCCTTTTTACATGCTATCT 59.046 43.478 0.00 0.00 0.00 1.98
3770 6593 3.953612 TGGCCCTTTTTACATGCTATCTG 59.046 43.478 0.00 0.00 0.00 2.90
3771 6594 3.319122 GGCCCTTTTTACATGCTATCTGG 59.681 47.826 0.00 0.00 0.00 3.86
3772 6595 3.954258 GCCCTTTTTACATGCTATCTGGT 59.046 43.478 0.00 0.00 0.00 4.00
3773 6596 4.402474 GCCCTTTTTACATGCTATCTGGTT 59.598 41.667 0.00 0.00 0.00 3.67
3774 6597 5.679638 GCCCTTTTTACATGCTATCTGGTTG 60.680 44.000 0.00 0.00 0.00 3.77
3775 6598 5.652014 CCCTTTTTACATGCTATCTGGTTGA 59.348 40.000 0.00 0.00 0.00 3.18
3776 6599 6.183360 CCCTTTTTACATGCTATCTGGTTGAG 60.183 42.308 0.00 0.00 0.00 3.02
3777 6600 6.599244 CCTTTTTACATGCTATCTGGTTGAGA 59.401 38.462 0.00 0.00 34.25 3.27
3778 6601 7.201679 CCTTTTTACATGCTATCTGGTTGAGAG 60.202 40.741 0.00 0.00 37.10 3.20
3779 6602 6.544928 TTTACATGCTATCTGGTTGAGAGA 57.455 37.500 0.00 0.00 36.17 3.10
3780 6603 6.544928 TTACATGCTATCTGGTTGAGAGAA 57.455 37.500 0.00 0.00 36.17 2.87
3781 6604 5.021033 ACATGCTATCTGGTTGAGAGAAG 57.979 43.478 0.00 0.00 36.17 2.85
3782 6605 4.469227 ACATGCTATCTGGTTGAGAGAAGT 59.531 41.667 0.00 0.00 36.17 3.01
3783 6606 4.462508 TGCTATCTGGTTGAGAGAAGTG 57.537 45.455 0.00 0.00 36.17 3.16
3784 6607 3.194062 GCTATCTGGTTGAGAGAAGTGC 58.806 50.000 0.00 0.00 36.17 4.40
3785 6608 3.368843 GCTATCTGGTTGAGAGAAGTGCA 60.369 47.826 0.00 0.00 36.17 4.57
3786 6609 3.996921 ATCTGGTTGAGAGAAGTGCAT 57.003 42.857 0.00 0.00 32.80 3.96
3787 6610 5.452496 GCTATCTGGTTGAGAGAAGTGCATA 60.452 44.000 0.00 0.00 36.17 3.14
3788 6611 5.627182 ATCTGGTTGAGAGAAGTGCATAT 57.373 39.130 0.00 0.00 32.80 1.78
3789 6612 5.426689 TCTGGTTGAGAGAAGTGCATATT 57.573 39.130 0.00 0.00 0.00 1.28
3790 6613 6.544928 TCTGGTTGAGAGAAGTGCATATTA 57.455 37.500 0.00 0.00 0.00 0.98
3791 6614 6.341316 TCTGGTTGAGAGAAGTGCATATTAC 58.659 40.000 0.00 0.00 0.00 1.89
3792 6615 6.048732 TGGTTGAGAGAAGTGCATATTACA 57.951 37.500 0.00 0.00 0.00 2.41
3793 6616 5.874810 TGGTTGAGAGAAGTGCATATTACAC 59.125 40.000 0.00 0.00 38.35 2.90
3794 6617 5.294552 GGTTGAGAGAAGTGCATATTACACC 59.705 44.000 0.00 0.00 38.87 4.16
3795 6618 5.023533 TGAGAGAAGTGCATATTACACCC 57.976 43.478 0.00 0.00 38.87 4.61
3796 6619 4.141711 TGAGAGAAGTGCATATTACACCCC 60.142 45.833 0.00 0.00 38.87 4.95
3797 6620 4.040755 AGAGAAGTGCATATTACACCCCT 58.959 43.478 0.00 1.15 38.87 4.79
3798 6621 4.101741 AGAGAAGTGCATATTACACCCCTC 59.898 45.833 0.00 12.42 38.87 4.30
3799 6622 3.780294 AGAAGTGCATATTACACCCCTCA 59.220 43.478 0.00 0.00 38.87 3.86
3800 6623 4.227300 AGAAGTGCATATTACACCCCTCAA 59.773 41.667 0.00 0.00 38.87 3.02
3801 6624 3.886123 AGTGCATATTACACCCCTCAAC 58.114 45.455 0.00 0.00 38.87 3.18
3802 6625 3.523564 AGTGCATATTACACCCCTCAACT 59.476 43.478 0.00 0.00 38.87 3.16
3803 6626 3.877508 GTGCATATTACACCCCTCAACTC 59.122 47.826 0.00 0.00 31.67 3.01
3804 6627 3.780294 TGCATATTACACCCCTCAACTCT 59.220 43.478 0.00 0.00 0.00 3.24
3805 6628 4.966168 TGCATATTACACCCCTCAACTCTA 59.034 41.667 0.00 0.00 0.00 2.43
3806 6629 5.070446 TGCATATTACACCCCTCAACTCTAG 59.930 44.000 0.00 0.00 0.00 2.43
3807 6630 5.542779 CATATTACACCCCTCAACTCTAGC 58.457 45.833 0.00 0.00 0.00 3.42
3808 6631 1.861982 TACACCCCTCAACTCTAGCC 58.138 55.000 0.00 0.00 0.00 3.93
3809 6632 0.910088 ACACCCCTCAACTCTAGCCC 60.910 60.000 0.00 0.00 0.00 5.19
3810 6633 0.618968 CACCCCTCAACTCTAGCCCT 60.619 60.000 0.00 0.00 0.00 5.19
3811 6634 1.016415 ACCCCTCAACTCTAGCCCTA 58.984 55.000 0.00 0.00 0.00 3.53
3812 6635 1.062810 ACCCCTCAACTCTAGCCCTAG 60.063 57.143 0.00 0.00 34.56 3.02
3813 6636 1.062810 CCCCTCAACTCTAGCCCTAGT 60.063 57.143 2.53 0.00 34.84 2.57
3814 6637 2.312390 CCCTCAACTCTAGCCCTAGTC 58.688 57.143 2.53 0.00 34.84 2.59
3815 6638 2.091555 CCCTCAACTCTAGCCCTAGTCT 60.092 54.545 2.53 0.00 34.84 3.24
3816 6639 3.138653 CCCTCAACTCTAGCCCTAGTCTA 59.861 52.174 2.53 0.00 34.84 2.59
3817 6640 4.386536 CCCTCAACTCTAGCCCTAGTCTAA 60.387 50.000 2.53 0.00 34.84 2.10
3818 6641 5.390387 CCTCAACTCTAGCCCTAGTCTAAT 58.610 45.833 2.53 0.00 34.84 1.73
3819 6642 6.467484 CCCTCAACTCTAGCCCTAGTCTAATA 60.467 46.154 2.53 0.00 34.84 0.98
3820 6643 7.179269 CCTCAACTCTAGCCCTAGTCTAATAT 58.821 42.308 2.53 0.00 34.84 1.28
3821 6644 8.330247 CCTCAACTCTAGCCCTAGTCTAATATA 58.670 40.741 2.53 0.00 34.84 0.86
3822 6645 9.169592 CTCAACTCTAGCCCTAGTCTAATATAC 57.830 40.741 2.53 0.00 34.84 1.47
3823 6646 8.666821 TCAACTCTAGCCCTAGTCTAATATACA 58.333 37.037 2.53 0.00 34.84 2.29
3824 6647 8.732531 CAACTCTAGCCCTAGTCTAATATACAC 58.267 40.741 2.53 0.00 34.84 2.90
3825 6648 7.404481 ACTCTAGCCCTAGTCTAATATACACC 58.596 42.308 2.53 0.00 34.84 4.16
3826 6649 6.729428 TCTAGCCCTAGTCTAATATACACCC 58.271 44.000 2.53 0.00 34.84 4.61
3827 6650 5.618616 AGCCCTAGTCTAATATACACCCT 57.381 43.478 0.00 0.00 0.00 4.34
3828 6651 5.581975 AGCCCTAGTCTAATATACACCCTC 58.418 45.833 0.00 0.00 0.00 4.30
3829 6652 5.076039 AGCCCTAGTCTAATATACACCCTCA 59.924 44.000 0.00 0.00 0.00 3.86
3830 6653 5.778750 GCCCTAGTCTAATATACACCCTCAA 59.221 44.000 0.00 0.00 0.00 3.02
3831 6654 6.269307 GCCCTAGTCTAATATACACCCTCAAA 59.731 42.308 0.00 0.00 0.00 2.69
3832 6655 7.668492 CCCTAGTCTAATATACACCCTCAAAC 58.332 42.308 0.00 0.00 0.00 2.93
3833 6656 7.509659 CCCTAGTCTAATATACACCCTCAAACT 59.490 40.741 0.00 0.00 0.00 2.66
3834 6657 8.578151 CCTAGTCTAATATACACCCTCAAACTC 58.422 40.741 0.00 0.00 0.00 3.01
3835 6658 9.357161 CTAGTCTAATATACACCCTCAAACTCT 57.643 37.037 0.00 0.00 0.00 3.24
3837 6660 9.710818 AGTCTAATATACACCCTCAAACTCTAA 57.289 33.333 0.00 0.00 0.00 2.10
3842 6665 4.467198 ACACCCTCAAACTCTAATACCG 57.533 45.455 0.00 0.00 0.00 4.02
3843 6666 3.836562 ACACCCTCAAACTCTAATACCGT 59.163 43.478 0.00 0.00 0.00 4.83
3844 6667 4.081807 ACACCCTCAAACTCTAATACCGTC 60.082 45.833 0.00 0.00 0.00 4.79
3845 6668 4.159879 CACCCTCAAACTCTAATACCGTCT 59.840 45.833 0.00 0.00 0.00 4.18
3846 6669 5.359009 CACCCTCAAACTCTAATACCGTCTA 59.641 44.000 0.00 0.00 0.00 2.59
3847 6670 5.593502 ACCCTCAAACTCTAATACCGTCTAG 59.406 44.000 0.00 0.00 0.00 2.43
3848 6671 5.593502 CCCTCAAACTCTAATACCGTCTAGT 59.406 44.000 0.00 0.00 0.00 2.57
3849 6672 6.096564 CCCTCAAACTCTAATACCGTCTAGTT 59.903 42.308 0.00 0.00 0.00 2.24
3850 6673 7.363617 CCCTCAAACTCTAATACCGTCTAGTTT 60.364 40.741 0.00 0.00 37.58 2.66
3851 6674 8.680903 CCTCAAACTCTAATACCGTCTAGTTTA 58.319 37.037 0.00 0.00 35.89 2.01
3852 6675 9.500864 CTCAAACTCTAATACCGTCTAGTTTAC 57.499 37.037 0.00 0.00 35.89 2.01
3853 6676 9.013229 TCAAACTCTAATACCGTCTAGTTTACA 57.987 33.333 0.00 0.00 35.89 2.41
3854 6677 9.070149 CAAACTCTAATACCGTCTAGTTTACAC 57.930 37.037 0.00 0.00 35.89 2.90
3855 6678 7.326968 ACTCTAATACCGTCTAGTTTACACC 57.673 40.000 0.00 0.00 0.00 4.16
3856 6679 6.319911 ACTCTAATACCGTCTAGTTTACACCC 59.680 42.308 0.00 0.00 0.00 4.61
3857 6680 4.743057 AATACCGTCTAGTTTACACCCC 57.257 45.455 0.00 0.00 0.00 4.95
3858 6681 1.269958 ACCGTCTAGTTTACACCCCC 58.730 55.000 0.00 0.00 0.00 5.40
3859 6682 1.269012 CCGTCTAGTTTACACCCCCA 58.731 55.000 0.00 0.00 0.00 4.96
3860 6683 1.624813 CCGTCTAGTTTACACCCCCAA 59.375 52.381 0.00 0.00 0.00 4.12
3861 6684 2.613725 CCGTCTAGTTTACACCCCCAAC 60.614 54.545 0.00 0.00 0.00 3.77
3862 6685 2.301009 CGTCTAGTTTACACCCCCAACT 59.699 50.000 0.00 0.00 35.00 3.16
3863 6686 3.615834 CGTCTAGTTTACACCCCCAACTC 60.616 52.174 0.00 0.00 32.88 3.01
3864 6687 3.581770 GTCTAGTTTACACCCCCAACTCT 59.418 47.826 0.00 0.00 32.88 3.24
3865 6688 3.836562 TCTAGTTTACACCCCCAACTCTC 59.163 47.826 0.00 0.00 32.88 3.20
3866 6689 2.414612 AGTTTACACCCCCAACTCTCA 58.585 47.619 0.00 0.00 0.00 3.27
3867 6690 2.781174 AGTTTACACCCCCAACTCTCAA 59.219 45.455 0.00 0.00 0.00 3.02
3868 6691 3.203487 AGTTTACACCCCCAACTCTCAAA 59.797 43.478 0.00 0.00 0.00 2.69
3869 6692 3.955524 TTACACCCCCAACTCTCAAAA 57.044 42.857 0.00 0.00 0.00 2.44
3870 6693 2.067365 ACACCCCCAACTCTCAAAAC 57.933 50.000 0.00 0.00 0.00 2.43
3871 6694 1.328279 CACCCCCAACTCTCAAAACC 58.672 55.000 0.00 0.00 0.00 3.27
3872 6695 0.179001 ACCCCCAACTCTCAAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
3873 6696 0.893727 CCCCCAACTCTCAAAACCGG 60.894 60.000 0.00 0.00 0.00 5.28
3874 6697 1.524008 CCCCAACTCTCAAAACCGGC 61.524 60.000 0.00 0.00 0.00 6.13
3875 6698 1.524008 CCCAACTCTCAAAACCGGCC 61.524 60.000 0.00 0.00 0.00 6.13
3876 6699 0.821711 CCAACTCTCAAAACCGGCCA 60.822 55.000 0.00 0.00 0.00 5.36
3877 6700 1.247567 CAACTCTCAAAACCGGCCAT 58.752 50.000 0.00 0.00 0.00 4.40
3878 6701 2.432444 CAACTCTCAAAACCGGCCATA 58.568 47.619 0.00 0.00 0.00 2.74
3879 6702 2.817258 CAACTCTCAAAACCGGCCATAA 59.183 45.455 0.00 0.00 0.00 1.90
3880 6703 3.366052 ACTCTCAAAACCGGCCATAAT 57.634 42.857 0.00 0.00 0.00 1.28
3881 6704 3.697166 ACTCTCAAAACCGGCCATAATT 58.303 40.909 0.00 0.00 0.00 1.40
3882 6705 3.694566 ACTCTCAAAACCGGCCATAATTC 59.305 43.478 0.00 0.00 0.00 2.17
3883 6706 3.691575 TCTCAAAACCGGCCATAATTCA 58.308 40.909 0.00 0.00 0.00 2.57
3884 6707 4.082845 TCTCAAAACCGGCCATAATTCAA 58.917 39.130 0.00 0.00 0.00 2.69
3885 6708 4.082463 TCTCAAAACCGGCCATAATTCAAC 60.082 41.667 0.00 0.00 0.00 3.18
3886 6709 3.056465 TCAAAACCGGCCATAATTCAACC 60.056 43.478 0.00 0.00 0.00 3.77
3887 6710 1.480789 AACCGGCCATAATTCAACCC 58.519 50.000 0.00 0.00 0.00 4.11
3888 6711 0.629058 ACCGGCCATAATTCAACCCT 59.371 50.000 0.00 0.00 0.00 4.34
3889 6712 1.318576 CCGGCCATAATTCAACCCTC 58.681 55.000 2.24 0.00 0.00 4.30
3890 6713 1.318576 CGGCCATAATTCAACCCTCC 58.681 55.000 2.24 0.00 0.00 4.30
3891 6714 1.704641 GGCCATAATTCAACCCTCCC 58.295 55.000 0.00 0.00 0.00 4.30
3892 6715 1.704641 GCCATAATTCAACCCTCCCC 58.295 55.000 0.00 0.00 0.00 4.81
3893 6716 1.217942 GCCATAATTCAACCCTCCCCT 59.782 52.381 0.00 0.00 0.00 4.79
3894 6717 2.753168 GCCATAATTCAACCCTCCCCTC 60.753 54.545 0.00 0.00 0.00 4.30
3895 6718 2.158460 CCATAATTCAACCCTCCCCTCC 60.158 54.545 0.00 0.00 0.00 4.30
3896 6719 1.603634 TAATTCAACCCTCCCCTCCC 58.396 55.000 0.00 0.00 0.00 4.30
3897 6720 1.221909 AATTCAACCCTCCCCTCCCC 61.222 60.000 0.00 0.00 0.00 4.81
3898 6721 2.446337 ATTCAACCCTCCCCTCCCCA 62.446 60.000 0.00 0.00 0.00 4.96
3899 6722 2.287194 CAACCCTCCCCTCCCCAT 60.287 66.667 0.00 0.00 0.00 4.00
3900 6723 1.935931 CAACCCTCCCCTCCCCATT 60.936 63.158 0.00 0.00 0.00 3.16
3901 6724 1.935931 AACCCTCCCCTCCCCATTG 60.936 63.158 0.00 0.00 0.00 2.82
3902 6725 2.044450 CCCTCCCCTCCCCATTGA 59.956 66.667 0.00 0.00 0.00 2.57
3903 6726 2.386935 CCCTCCCCTCCCCATTGAC 61.387 68.421 0.00 0.00 0.00 3.18
3904 6727 2.386935 CCTCCCCTCCCCATTGACC 61.387 68.421 0.00 0.00 0.00 4.02
3905 6728 2.690881 TCCCCTCCCCATTGACCG 60.691 66.667 0.00 0.00 0.00 4.79
3906 6729 3.809013 CCCCTCCCCATTGACCGG 61.809 72.222 0.00 0.00 0.00 5.28
3907 6730 3.015145 CCCTCCCCATTGACCGGT 61.015 66.667 6.92 6.92 0.00 5.28
3908 6731 2.612493 CCCTCCCCATTGACCGGTT 61.612 63.158 9.42 0.00 0.00 4.44
3909 6732 1.382629 CCTCCCCATTGACCGGTTT 59.617 57.895 9.42 0.00 0.00 3.27
3910 6733 0.251608 CCTCCCCATTGACCGGTTTT 60.252 55.000 9.42 0.00 0.00 2.43
3911 6734 0.887933 CTCCCCATTGACCGGTTTTG 59.112 55.000 9.42 6.98 0.00 2.44
3912 6735 0.478942 TCCCCATTGACCGGTTTTGA 59.521 50.000 9.42 0.00 0.00 2.69
3913 6736 0.601057 CCCCATTGACCGGTTTTGAC 59.399 55.000 9.42 0.00 0.00 3.18
3914 6737 0.601057 CCCATTGACCGGTTTTGACC 59.399 55.000 9.42 0.00 0.00 4.02
3915 6738 0.601057 CCATTGACCGGTTTTGACCC 59.399 55.000 9.42 0.00 0.00 4.46
3916 6739 0.239879 CATTGACCGGTTTTGACCCG 59.760 55.000 9.42 0.00 45.07 5.28
3917 6740 0.179012 ATTGACCGGTTTTGACCCGT 60.179 50.000 9.42 0.00 43.98 5.28
3918 6741 0.394080 TTGACCGGTTTTGACCCGTT 60.394 50.000 9.42 0.00 43.98 4.44
3919 6742 1.096386 TGACCGGTTTTGACCCGTTG 61.096 55.000 9.42 0.00 43.98 4.10
3920 6743 0.814812 GACCGGTTTTGACCCGTTGA 60.815 55.000 9.42 0.00 43.98 3.18
3921 6744 1.096967 ACCGGTTTTGACCCGTTGAC 61.097 55.000 0.00 0.00 43.98 3.18
3922 6745 0.816421 CCGGTTTTGACCCGTTGACT 60.816 55.000 0.00 0.00 43.98 3.41
3923 6746 0.306533 CGGTTTTGACCCGTTGACTG 59.693 55.000 0.00 0.00 40.59 3.51
3924 6747 0.666374 GGTTTTGACCCGTTGACTGG 59.334 55.000 0.00 0.00 0.00 4.00
3930 6753 3.047877 CCCGTTGACTGGGCGAAC 61.048 66.667 0.00 0.00 40.47 3.95
3931 6754 2.280524 CCGTTGACTGGGCGAACA 60.281 61.111 0.00 0.00 0.00 3.18
3932 6755 2.317609 CCGTTGACTGGGCGAACAG 61.318 63.158 5.38 5.38 44.03 3.16
3942 6765 4.701956 CTGGGCGAACAGTAAATTCATT 57.298 40.909 0.00 0.00 33.81 2.57
3943 6766 5.059404 CTGGGCGAACAGTAAATTCATTT 57.941 39.130 0.00 0.00 33.81 2.32
3944 6767 5.461032 TGGGCGAACAGTAAATTCATTTT 57.539 34.783 0.00 0.00 0.00 1.82
3945 6768 5.848406 TGGGCGAACAGTAAATTCATTTTT 58.152 33.333 0.00 0.00 0.00 1.94
4005 6828 5.838531 TTTTTCAACGGGTGAACAGTAAT 57.161 34.783 8.21 0.00 46.09 1.89
4006 6829 5.427036 TTTTCAACGGGTGAACAGTAATC 57.573 39.130 8.21 0.00 46.09 1.75
4007 6830 3.048337 TCAACGGGTGAACAGTAATCC 57.952 47.619 0.00 0.00 31.51 3.01
4008 6831 2.081462 CAACGGGTGAACAGTAATCCC 58.919 52.381 0.00 0.00 35.22 3.85
4009 6832 1.354101 ACGGGTGAACAGTAATCCCA 58.646 50.000 0.00 0.00 38.15 4.37
4010 6833 1.700739 ACGGGTGAACAGTAATCCCAA 59.299 47.619 0.00 0.00 38.15 4.12
4011 6834 2.106857 ACGGGTGAACAGTAATCCCAAA 59.893 45.455 0.00 0.00 38.15 3.28
4012 6835 3.150767 CGGGTGAACAGTAATCCCAAAA 58.849 45.455 0.00 0.00 38.15 2.44
4013 6836 3.570550 CGGGTGAACAGTAATCCCAAAAA 59.429 43.478 0.00 0.00 38.15 1.94
4038 6861 9.567776 AAAAAGGTTGAAGAAAGGAAAAAGAAA 57.432 25.926 0.00 0.00 0.00 2.52
4039 6862 9.739276 AAAAGGTTGAAGAAAGGAAAAAGAAAT 57.261 25.926 0.00 0.00 0.00 2.17
4040 6863 8.948631 AAGGTTGAAGAAAGGAAAAAGAAATC 57.051 30.769 0.00 0.00 0.00 2.17
4041 6864 8.078060 AGGTTGAAGAAAGGAAAAAGAAATCA 57.922 30.769 0.00 0.00 0.00 2.57
4042 6865 8.539544 AGGTTGAAGAAAGGAAAAAGAAATCAA 58.460 29.630 0.00 0.00 0.00 2.57
4043 6866 9.161629 GGTTGAAGAAAGGAAAAAGAAATCAAA 57.838 29.630 0.00 0.00 0.00 2.69
4080 6903 9.959749 GTTTTTATTAGGTGAACAGTGAATTCA 57.040 29.630 3.38 3.38 33.68 2.57
4150 6973 2.472886 CGATGTTTGAGTGCGTGATGTC 60.473 50.000 0.00 0.00 0.00 3.06
4154 6977 0.943835 TTGAGTGCGTGATGTCCGTG 60.944 55.000 0.00 0.00 0.00 4.94
4163 6986 2.327568 GTGATGTCCGTGCCAATTTTG 58.672 47.619 0.00 0.00 0.00 2.44
4166 6989 0.313672 TGTCCGTGCCAATTTTGAGC 59.686 50.000 0.00 0.00 0.00 4.26
4180 7003 1.428448 TTGAGCTTGTTCGGACATCG 58.572 50.000 0.00 0.00 35.29 3.84
4187 7010 0.454600 TGTTCGGACATCGGAGTAGC 59.545 55.000 0.00 0.00 39.77 3.58
4221 7046 2.293399 GACAATGTGGGGTCTGTGAAAC 59.707 50.000 0.00 0.00 37.35 2.78
4241 7066 3.238903 CAGTTAACTGTTCGTGCACTG 57.761 47.619 24.70 8.79 39.09 3.66
4243 7068 2.864343 AGTTAACTGTTCGTGCACTGTC 59.136 45.455 16.19 5.24 0.00 3.51
4245 7070 0.107897 AACTGTTCGTGCACTGTCCA 60.108 50.000 16.19 5.31 0.00 4.02
4246 7071 0.810031 ACTGTTCGTGCACTGTCCAC 60.810 55.000 16.19 4.68 0.00 4.02
4247 7072 0.809636 CTGTTCGTGCACTGTCCACA 60.810 55.000 16.19 8.94 32.85 4.17
4248 7073 0.179059 TGTTCGTGCACTGTCCACAT 60.179 50.000 16.19 0.00 32.85 3.21
4251 7076 2.382746 CGTGCACTGTCCACATCGG 61.383 63.158 16.19 0.00 32.85 4.18
4252 7077 1.005037 GTGCACTGTCCACATCGGA 60.005 57.895 10.32 0.00 43.61 4.55
4358 7333 2.519377 TACTGTTCACCCAGTCAACG 57.481 50.000 0.00 0.00 44.36 4.10
4366 7341 3.339547 CCCAGTCAACGGGTCAAAT 57.660 52.632 0.00 0.00 39.05 2.32
4367 7342 2.483014 CCCAGTCAACGGGTCAAATA 57.517 50.000 0.00 0.00 39.05 1.40
4368 7343 2.081462 CCCAGTCAACGGGTCAAATAC 58.919 52.381 0.00 0.00 39.05 1.89
4417 7392 0.999712 GGAGGGGAGGGTTGAATTCA 59.000 55.000 3.38 3.38 0.00 2.57
4419 7394 1.916181 GAGGGGAGGGTTGAATTCAGA 59.084 52.381 8.41 0.00 0.00 3.27
4435 7410 2.833794 TCAGACCGGTTTTGAGAGTTG 58.166 47.619 9.42 0.00 0.00 3.16
4437 7412 1.766496 AGACCGGTTTTGAGAGTTGGA 59.234 47.619 9.42 0.00 0.00 3.53
4440 7415 1.202770 CCGGTTTTGAGAGTTGGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
5521 8507 5.231147 GCGCTCTAGTATCTAATATGCAAGC 59.769 44.000 0.00 0.00 0.00 4.01
5602 8589 0.603975 AGTTTCAGCCTTCGTCTGCC 60.604 55.000 0.00 0.00 0.00 4.85
5686 8673 9.541143 TGTATATTGAAACATCGAAGAATGCTA 57.459 29.630 0.00 0.00 43.58 3.49
5687 8674 9.798885 GTATATTGAAACATCGAAGAATGCTAC 57.201 33.333 0.00 0.00 43.58 3.58
5711 8698 8.579682 ACAGTAGAAAATTTCAGCATTTCAAC 57.420 30.769 8.55 0.00 35.91 3.18
5746 8733 6.380095 TGTGTTTATAGTGAACAACCCAAC 57.620 37.500 0.00 0.00 38.60 3.77
5807 8794 9.760660 GCTATATTCGTTCTTTGGCTTATTATG 57.239 33.333 0.00 0.00 0.00 1.90
5965 8952 1.145759 GATGCGATGAAAGCCGACGA 61.146 55.000 0.00 0.00 0.00 4.20
5985 8972 1.176527 GTTGGCCAATGCTGCTAGAA 58.823 50.000 23.66 0.00 37.74 2.10
6053 9040 1.998315 CGGCTGAAGATGAAGACACAG 59.002 52.381 0.00 0.00 0.00 3.66
6124 9111 9.354673 GGAATATTTCATCTCCCTTGTTATCAA 57.645 33.333 0.00 0.00 0.00 2.57
6263 9253 7.338449 GGTTTACTGTATATTTTGCTCCTTCCA 59.662 37.037 0.00 0.00 0.00 3.53
6365 9357 9.920946 TTAATTGTCCCTGAATAAGAAAGCTAT 57.079 29.630 0.00 0.00 0.00 2.97
6370 9362 8.938883 TGTCCCTGAATAAGAAAGCTATATCTT 58.061 33.333 12.34 12.34 39.19 2.40
6371 9363 9.430623 GTCCCTGAATAAGAAAGCTATATCTTC 57.569 37.037 11.36 0.36 37.16 2.87
6372 9364 9.386122 TCCCTGAATAAGAAAGCTATATCTTCT 57.614 33.333 11.36 2.64 37.16 2.85
6380 9372 8.729805 AAGAAAGCTATATCTTCTTGTCCTTG 57.270 34.615 9.09 0.00 30.16 3.61
6381 9373 7.856415 AGAAAGCTATATCTTCTTGTCCTTGT 58.144 34.615 0.00 0.00 0.00 3.16
6382 9374 7.984617 AGAAAGCTATATCTTCTTGTCCTTGTC 59.015 37.037 0.00 0.00 0.00 3.18
6383 9375 6.168270 AGCTATATCTTCTTGTCCTTGTCC 57.832 41.667 0.00 0.00 0.00 4.02
6421 9428 6.295719 ACCGTTATATCTTCTTGTCCTTGT 57.704 37.500 0.00 0.00 0.00 3.16
6422 9429 6.338937 ACCGTTATATCTTCTTGTCCTTGTC 58.661 40.000 0.00 0.00 0.00 3.18
6423 9430 5.753921 CCGTTATATCTTCTTGTCCTTGTCC 59.246 44.000 0.00 0.00 0.00 4.02
6424 9431 6.407074 CCGTTATATCTTCTTGTCCTTGTCCT 60.407 42.308 0.00 0.00 0.00 3.85
6430 9437 0.954452 CTTGTCCTTGTCCTTGGTGC 59.046 55.000 0.00 0.00 0.00 5.01
6431 9438 0.467290 TTGTCCTTGTCCTTGGTGCC 60.467 55.000 0.00 0.00 0.00 5.01
6432 9439 1.966451 GTCCTTGTCCTTGGTGCCG 60.966 63.158 0.00 0.00 0.00 5.69
6435 9442 1.227823 CTTGTCCTTGGTGCCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
6474 9481 3.552890 GCAAGGAAGCCGAATTTTGTTCT 60.553 43.478 0.00 0.00 0.00 3.01
6482 9489 3.303791 GCCGAATTTTGTTCTTGTCTCGT 60.304 43.478 0.00 0.00 0.00 4.18
6483 9490 4.455124 CCGAATTTTGTTCTTGTCTCGTC 58.545 43.478 0.00 0.00 0.00 4.20
6557 9566 2.560504 TGCATGTCTTCGTGAGTTTGT 58.439 42.857 0.00 0.00 32.78 2.83
6610 9619 2.758979 CGTTAGCTCCCTTCTAACTGGA 59.241 50.000 0.00 0.00 42.10 3.86
6611 9620 3.429135 CGTTAGCTCCCTTCTAACTGGAC 60.429 52.174 0.00 0.00 42.10 4.02
6612 9621 1.574263 AGCTCCCTTCTAACTGGACC 58.426 55.000 0.00 0.00 0.00 4.46
6613 9622 0.175989 GCTCCCTTCTAACTGGACCG 59.824 60.000 0.00 0.00 0.00 4.79
6614 9623 0.175989 CTCCCTTCTAACTGGACCGC 59.824 60.000 0.00 0.00 0.00 5.68
6615 9624 1.221021 CCCTTCTAACTGGACCGCC 59.779 63.158 0.00 0.00 0.00 6.13
6616 9625 1.221021 CCTTCTAACTGGACCGCCC 59.779 63.158 0.00 0.00 0.00 6.13
6617 9626 1.550130 CCTTCTAACTGGACCGCCCA 61.550 60.000 0.00 0.00 44.25 5.36
6624 9633 2.285368 TGGACCGCCCAGATTCCT 60.285 61.111 0.00 0.00 40.82 3.36
6625 9634 1.923395 TGGACCGCCCAGATTCCTT 60.923 57.895 0.00 0.00 40.82 3.36
6626 9635 1.452108 GGACCGCCCAGATTCCTTG 60.452 63.158 0.00 0.00 34.14 3.61
6627 9636 1.452108 GACCGCCCAGATTCCTTGG 60.452 63.158 0.00 0.00 0.00 3.61
6628 9637 2.124151 CCGCCCAGATTCCTTGGG 60.124 66.667 5.94 5.94 45.43 4.12
6629 9638 2.679342 CCGCCCAGATTCCTTGGGA 61.679 63.158 14.30 0.00 45.50 4.37
6630 9639 1.533711 CGCCCAGATTCCTTGGGAT 59.466 57.895 14.30 0.00 45.50 3.85
6631 9640 0.536006 CGCCCAGATTCCTTGGGATC 60.536 60.000 14.30 0.00 45.50 3.36
6632 9641 0.536006 GCCCAGATTCCTTGGGATCG 60.536 60.000 14.30 0.00 45.50 3.69
6633 9642 0.536006 CCCAGATTCCTTGGGATCGC 60.536 60.000 4.25 2.14 45.50 4.58
6634 9643 0.181114 CCAGATTCCTTGGGATCGCA 59.819 55.000 8.63 8.63 0.00 5.10
6636 9645 1.878088 CAGATTCCTTGGGATCGCATG 59.122 52.381 13.85 15.18 0.00 4.06
6638 9647 2.374504 AGATTCCTTGGGATCGCATGAT 59.625 45.455 22.49 11.79 37.60 2.45
6640 9649 2.260844 TCCTTGGGATCGCATGATTC 57.739 50.000 22.49 0.00 34.09 2.52
6641 9650 1.770658 TCCTTGGGATCGCATGATTCT 59.229 47.619 22.49 0.00 34.09 2.40
6642 9651 2.149578 CCTTGGGATCGCATGATTCTC 58.850 52.381 22.49 0.00 34.09 2.87
6643 9652 1.797046 CTTGGGATCGCATGATTCTCG 59.203 52.381 17.69 0.00 34.09 4.04
6644 9653 0.601046 TGGGATCGCATGATTCTCGC 60.601 55.000 8.63 0.00 34.09 5.03
6645 9654 0.601046 GGGATCGCATGATTCTCGCA 60.601 55.000 4.64 0.00 34.09 5.10
6646 9655 0.788995 GGATCGCATGATTCTCGCAG 59.211 55.000 0.00 0.00 34.09 5.18
6647 9656 0.788995 GATCGCATGATTCTCGCAGG 59.211 55.000 0.00 0.00 34.09 4.85
6648 9657 0.390492 ATCGCATGATTCTCGCAGGA 59.610 50.000 0.00 0.00 0.00 3.86
6649 9658 0.390492 TCGCATGATTCTCGCAGGAT 59.610 50.000 0.00 0.00 0.00 3.24
6650 9659 0.788995 CGCATGATTCTCGCAGGATC 59.211 55.000 0.00 0.00 0.00 3.36
6651 9660 1.870993 CGCATGATTCTCGCAGGATCA 60.871 52.381 8.88 8.88 0.00 2.92
6655 9664 4.261489 GCATGATTCTCGCAGGATCAAAAT 60.261 41.667 10.10 0.00 0.00 1.82
7095 10104 3.971894 AGGTTATCGAGCAGGGGG 58.028 61.111 0.00 0.00 0.00 5.40
7129 10444 8.477419 AATGGAAGATTTTAACAAGTTCCTCA 57.523 30.769 0.00 0.00 35.48 3.86
7222 10538 9.971744 AATTTCAACAAATTCTTCAAAAAGACG 57.028 25.926 0.00 0.00 41.23 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.224402 GCTCCTCAAACACAGTCCTCTT 60.224 50.000 0.00 0.00 0.00 2.85
50 54 1.892819 CTCCAGCTTCCGCTCCTCAA 61.893 60.000 0.00 0.00 45.15 3.02
93 97 0.171231 CGGTCATCTTGAGCTCGTCA 59.829 55.000 9.64 0.00 42.30 4.35
107 111 4.974368 TTTTCTGCTTTTTCTTCGGTCA 57.026 36.364 0.00 0.00 0.00 4.02
130 134 4.071423 CCACTTGTGTCCATGAACATACA 58.929 43.478 0.00 0.00 0.00 2.29
131 135 4.072131 ACCACTTGTGTCCATGAACATAC 58.928 43.478 0.00 0.00 0.00 2.39
171 177 4.314961 TCGTGACAAAGCTCAACATATGT 58.685 39.130 1.41 1.41 0.00 2.29
212 218 2.014335 TGTTCCTCATGAGCACGATG 57.986 50.000 17.76 2.60 0.00 3.84
309 315 3.293337 CCTCCCATCATGCTCATCAAAA 58.707 45.455 0.00 0.00 0.00 2.44
354 360 3.837146 ACTACCATAGCCATCTCTCATGG 59.163 47.826 0.00 0.00 41.60 3.66
359 365 5.652891 CCGTTATACTACCATAGCCATCTCT 59.347 44.000 0.00 0.00 0.00 3.10
363 369 4.222145 CACCCGTTATACTACCATAGCCAT 59.778 45.833 0.00 0.00 0.00 4.40
381 387 0.103208 GTCTCCTCACATAGCACCCG 59.897 60.000 0.00 0.00 0.00 5.28
392 398 0.842030 ATGCCACCCAAGTCTCCTCA 60.842 55.000 0.00 0.00 0.00 3.86
533 539 3.998913 TGTGAACATTGGCCTCTCATA 57.001 42.857 3.32 0.00 0.00 2.15
567 573 6.646240 ACCAATTTTCATTTTCTCCATTGTCG 59.354 34.615 0.00 0.00 0.00 4.35
696 1965 7.066284 CACCACCTCCAATAGATGTTCTAAAAG 59.934 40.741 0.00 0.00 31.96 2.27
875 2176 7.039644 TCCAGTTTCCAGTTCTAAAAACAAACA 60.040 33.333 0.00 0.00 34.76 2.83
876 2177 7.317390 TCCAGTTTCCAGTTCTAAAAACAAAC 58.683 34.615 0.00 0.00 34.76 2.93
938 3367 7.364200 TGTGATGGACCTTTAACAAAAATACG 58.636 34.615 0.00 0.00 0.00 3.06
955 3384 5.768980 ATTCTCCTCTTCTTTGTGATGGA 57.231 39.130 0.00 0.00 0.00 3.41
1207 3636 0.464452 GGTTGTGGGGATACGAGAGG 59.536 60.000 0.00 0.00 37.60 3.69
1613 4050 2.349886 CAGATGAAAACCTAGCGACAGC 59.650 50.000 0.00 0.00 45.58 4.40
1618 4055 3.060895 GTCGAACAGATGAAAACCTAGCG 59.939 47.826 0.00 0.00 0.00 4.26
1787 4232 6.684538 ACTCATCCTCCACCTTATAGTAAGT 58.315 40.000 0.00 0.00 0.00 2.24
1820 4265 4.363990 AGCCACAGCGACAGACGG 62.364 66.667 0.00 0.00 46.67 4.79
1873 4318 3.983988 CCTCGATAAGTTCATCATCGGTG 59.016 47.826 6.04 0.00 41.38 4.94
1912 4357 1.539929 CGATCATGGACCTGAGGAAGC 60.540 57.143 4.99 0.00 0.00 3.86
1984 4429 1.585006 CCTCGCGTTGTACAGGTCT 59.415 57.895 5.77 0.00 0.00 3.85
2034 4482 7.922278 CCCACTTGGTATCATTCATGTTAAATG 59.078 37.037 0.00 0.00 35.81 2.32
2035 4483 7.838696 TCCCACTTGGTATCATTCATGTTAAAT 59.161 33.333 0.00 0.00 34.77 1.40
2234 4700 4.519540 ACATTCAACCCATGCAAAGTAC 57.480 40.909 0.00 0.00 0.00 2.73
2370 4837 4.535526 AACCTGAAATACCATGCCAAAC 57.464 40.909 0.00 0.00 0.00 2.93
2629 5100 4.441356 GCATCACCCAACAAAGACAAAAGA 60.441 41.667 0.00 0.00 0.00 2.52
2762 5242 6.993902 GGTGGAAATATGATAGGTCCGTTTAA 59.006 38.462 1.22 0.00 0.00 1.52
2765 5245 4.658901 AGGTGGAAATATGATAGGTCCGTT 59.341 41.667 1.22 0.00 0.00 4.44
2863 5343 8.851145 TCCACATACAAGATAATAGAGACTGAC 58.149 37.037 0.00 0.00 0.00 3.51
3267 5747 7.040478 AGCTGAATTTTGTTCACTGTATTGCTA 60.040 33.333 0.00 0.00 0.00 3.49
3276 5756 6.296026 TGGTACTAGCTGAATTTTGTTCACT 58.704 36.000 0.00 0.00 0.00 3.41
3407 5887 4.503714 AGAGTCCAGGAAACTCACAAAA 57.496 40.909 10.29 0.00 44.54 2.44
3685 6508 9.408648 AGTATCTAAACCCAAATGAATACCAAG 57.591 33.333 0.00 0.00 0.00 3.61
3764 6587 4.462508 TGCACTTCTCTCAACCAGATAG 57.537 45.455 0.00 0.00 0.00 2.08
3765 6588 6.737720 ATATGCACTTCTCTCAACCAGATA 57.262 37.500 0.00 0.00 0.00 1.98
3766 6589 3.996921 ATGCACTTCTCTCAACCAGAT 57.003 42.857 0.00 0.00 0.00 2.90
3767 6590 5.426689 AATATGCACTTCTCTCAACCAGA 57.573 39.130 0.00 0.00 0.00 3.86
3768 6591 6.036517 GTGTAATATGCACTTCTCTCAACCAG 59.963 42.308 0.00 0.00 34.30 4.00
3769 6592 5.874810 GTGTAATATGCACTTCTCTCAACCA 59.125 40.000 0.00 0.00 34.30 3.67
3770 6593 5.294552 GGTGTAATATGCACTTCTCTCAACC 59.705 44.000 9.60 0.00 37.07 3.77
3771 6594 5.294552 GGGTGTAATATGCACTTCTCTCAAC 59.705 44.000 9.60 0.00 37.07 3.18
3772 6595 5.428253 GGGTGTAATATGCACTTCTCTCAA 58.572 41.667 9.60 0.00 37.07 3.02
3773 6596 4.141711 GGGGTGTAATATGCACTTCTCTCA 60.142 45.833 9.60 0.00 37.07 3.27
3774 6597 4.101741 AGGGGTGTAATATGCACTTCTCTC 59.898 45.833 9.60 0.00 37.07 3.20
3775 6598 4.040755 AGGGGTGTAATATGCACTTCTCT 58.959 43.478 9.60 0.00 37.07 3.10
3776 6599 4.141711 TGAGGGGTGTAATATGCACTTCTC 60.142 45.833 16.64 16.64 36.92 2.87
3777 6600 3.780294 TGAGGGGTGTAATATGCACTTCT 59.220 43.478 9.60 7.75 37.07 2.85
3778 6601 4.150897 TGAGGGGTGTAATATGCACTTC 57.849 45.455 9.60 6.88 37.07 3.01
3779 6602 4.018415 AGTTGAGGGGTGTAATATGCACTT 60.018 41.667 9.60 0.00 37.07 3.16
3780 6603 3.523564 AGTTGAGGGGTGTAATATGCACT 59.476 43.478 9.60 0.00 37.07 4.40
3781 6604 3.877508 GAGTTGAGGGGTGTAATATGCAC 59.122 47.826 0.00 2.94 36.22 4.57
3782 6605 3.780294 AGAGTTGAGGGGTGTAATATGCA 59.220 43.478 0.00 0.00 0.00 3.96
3783 6606 4.423625 AGAGTTGAGGGGTGTAATATGC 57.576 45.455 0.00 0.00 0.00 3.14
3784 6607 5.511545 GGCTAGAGTTGAGGGGTGTAATATG 60.512 48.000 0.00 0.00 0.00 1.78
3785 6608 4.593634 GGCTAGAGTTGAGGGGTGTAATAT 59.406 45.833 0.00 0.00 0.00 1.28
3786 6609 3.965347 GGCTAGAGTTGAGGGGTGTAATA 59.035 47.826 0.00 0.00 0.00 0.98
3787 6610 2.772515 GGCTAGAGTTGAGGGGTGTAAT 59.227 50.000 0.00 0.00 0.00 1.89
3788 6611 2.185387 GGCTAGAGTTGAGGGGTGTAA 58.815 52.381 0.00 0.00 0.00 2.41
3789 6612 1.621622 GGGCTAGAGTTGAGGGGTGTA 60.622 57.143 0.00 0.00 0.00 2.90
3790 6613 0.910088 GGGCTAGAGTTGAGGGGTGT 60.910 60.000 0.00 0.00 0.00 4.16
3791 6614 0.618968 AGGGCTAGAGTTGAGGGGTG 60.619 60.000 0.00 0.00 0.00 4.61
3792 6615 1.016415 TAGGGCTAGAGTTGAGGGGT 58.984 55.000 0.00 0.00 0.00 4.95
3793 6616 1.062810 ACTAGGGCTAGAGTTGAGGGG 60.063 57.143 0.00 0.00 36.97 4.79
3794 6617 2.091555 AGACTAGGGCTAGAGTTGAGGG 60.092 54.545 0.00 0.00 36.97 4.30
3795 6618 3.306472 AGACTAGGGCTAGAGTTGAGG 57.694 52.381 0.00 0.00 36.97 3.86
3796 6619 9.169592 GTATATTAGACTAGGGCTAGAGTTGAG 57.830 40.741 0.00 0.00 36.97 3.02
3797 6620 8.666821 TGTATATTAGACTAGGGCTAGAGTTGA 58.333 37.037 0.00 0.00 36.97 3.18
3798 6621 8.732531 GTGTATATTAGACTAGGGCTAGAGTTG 58.267 40.741 0.00 0.00 36.97 3.16
3799 6622 7.889600 GGTGTATATTAGACTAGGGCTAGAGTT 59.110 40.741 0.00 0.00 36.97 3.01
3800 6623 7.404481 GGTGTATATTAGACTAGGGCTAGAGT 58.596 42.308 0.00 0.00 36.97 3.24
3801 6624 6.829811 GGGTGTATATTAGACTAGGGCTAGAG 59.170 46.154 0.00 0.00 36.97 2.43
3802 6625 6.508202 AGGGTGTATATTAGACTAGGGCTAGA 59.492 42.308 0.00 0.00 36.97 2.43
3803 6626 6.733509 AGGGTGTATATTAGACTAGGGCTAG 58.266 44.000 0.00 0.00 39.04 3.42
3804 6627 6.276330 TGAGGGTGTATATTAGACTAGGGCTA 59.724 42.308 0.00 0.00 0.00 3.93
3805 6628 5.076039 TGAGGGTGTATATTAGACTAGGGCT 59.924 44.000 0.00 0.00 0.00 5.19
3806 6629 5.331069 TGAGGGTGTATATTAGACTAGGGC 58.669 45.833 0.00 0.00 0.00 5.19
3807 6630 7.509659 AGTTTGAGGGTGTATATTAGACTAGGG 59.490 40.741 0.00 0.00 0.00 3.53
3808 6631 8.480133 AGTTTGAGGGTGTATATTAGACTAGG 57.520 38.462 0.00 0.00 0.00 3.02
3809 6632 9.357161 AGAGTTTGAGGGTGTATATTAGACTAG 57.643 37.037 0.00 0.00 0.00 2.57
3811 6634 9.710818 TTAGAGTTTGAGGGTGTATATTAGACT 57.289 33.333 0.00 0.00 0.00 3.24
3816 6639 8.365647 CGGTATTAGAGTTTGAGGGTGTATATT 58.634 37.037 0.00 0.00 0.00 1.28
3817 6640 7.508296 ACGGTATTAGAGTTTGAGGGTGTATAT 59.492 37.037 0.00 0.00 0.00 0.86
3818 6641 6.835488 ACGGTATTAGAGTTTGAGGGTGTATA 59.165 38.462 0.00 0.00 0.00 1.47
3819 6642 5.659971 ACGGTATTAGAGTTTGAGGGTGTAT 59.340 40.000 0.00 0.00 0.00 2.29
3820 6643 5.018809 ACGGTATTAGAGTTTGAGGGTGTA 58.981 41.667 0.00 0.00 0.00 2.90
3821 6644 3.836562 ACGGTATTAGAGTTTGAGGGTGT 59.163 43.478 0.00 0.00 0.00 4.16
3822 6645 4.159879 AGACGGTATTAGAGTTTGAGGGTG 59.840 45.833 0.00 0.00 0.00 4.61
3823 6646 4.351127 AGACGGTATTAGAGTTTGAGGGT 58.649 43.478 0.00 0.00 0.00 4.34
3824 6647 5.593502 ACTAGACGGTATTAGAGTTTGAGGG 59.406 44.000 0.00 0.00 0.00 4.30
3825 6648 6.696441 ACTAGACGGTATTAGAGTTTGAGG 57.304 41.667 0.00 0.00 0.00 3.86
3826 6649 9.500864 GTAAACTAGACGGTATTAGAGTTTGAG 57.499 37.037 10.73 0.00 37.60 3.02
3827 6650 9.013229 TGTAAACTAGACGGTATTAGAGTTTGA 57.987 33.333 10.73 0.00 37.60 2.69
3828 6651 9.070149 GTGTAAACTAGACGGTATTAGAGTTTG 57.930 37.037 10.73 0.00 37.60 2.93
3829 6652 8.246871 GGTGTAAACTAGACGGTATTAGAGTTT 58.753 37.037 0.00 7.17 39.66 2.66
3830 6653 7.148000 GGGTGTAAACTAGACGGTATTAGAGTT 60.148 40.741 0.00 0.00 0.00 3.01
3831 6654 6.319911 GGGTGTAAACTAGACGGTATTAGAGT 59.680 42.308 0.00 0.00 0.00 3.24
3832 6655 6.238869 GGGGTGTAAACTAGACGGTATTAGAG 60.239 46.154 0.00 0.00 0.00 2.43
3833 6656 5.594317 GGGGTGTAAACTAGACGGTATTAGA 59.406 44.000 0.00 0.00 0.00 2.10
3834 6657 5.221322 GGGGGTGTAAACTAGACGGTATTAG 60.221 48.000 0.00 0.00 0.00 1.73
3835 6658 4.649218 GGGGGTGTAAACTAGACGGTATTA 59.351 45.833 0.00 0.00 0.00 0.98
3836 6659 3.452264 GGGGGTGTAAACTAGACGGTATT 59.548 47.826 0.00 0.00 0.00 1.89
3837 6660 3.033909 GGGGGTGTAAACTAGACGGTAT 58.966 50.000 0.00 0.00 0.00 2.73
3838 6661 2.225242 TGGGGGTGTAAACTAGACGGTA 60.225 50.000 0.00 0.00 0.00 4.02
3839 6662 1.269958 GGGGGTGTAAACTAGACGGT 58.730 55.000 0.00 0.00 0.00 4.83
3840 6663 1.269012 TGGGGGTGTAAACTAGACGG 58.731 55.000 0.00 0.00 0.00 4.79
3841 6664 2.301009 AGTTGGGGGTGTAAACTAGACG 59.699 50.000 0.00 0.00 32.48 4.18
3842 6665 3.581770 AGAGTTGGGGGTGTAAACTAGAC 59.418 47.826 0.00 0.00 34.37 2.59
3843 6666 3.836562 GAGAGTTGGGGGTGTAAACTAGA 59.163 47.826 0.00 0.00 34.37 2.43
3844 6667 3.581332 TGAGAGTTGGGGGTGTAAACTAG 59.419 47.826 0.00 0.00 34.37 2.57
3845 6668 3.589641 TGAGAGTTGGGGGTGTAAACTA 58.410 45.455 0.00 0.00 34.37 2.24
3846 6669 2.414612 TGAGAGTTGGGGGTGTAAACT 58.585 47.619 0.00 0.00 36.87 2.66
3847 6670 2.943036 TGAGAGTTGGGGGTGTAAAC 57.057 50.000 0.00 0.00 0.00 2.01
3848 6671 3.955524 TTTGAGAGTTGGGGGTGTAAA 57.044 42.857 0.00 0.00 0.00 2.01
3849 6672 3.558033 GTTTTGAGAGTTGGGGGTGTAA 58.442 45.455 0.00 0.00 0.00 2.41
3850 6673 2.158579 GGTTTTGAGAGTTGGGGGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
3851 6674 1.411074 GGTTTTGAGAGTTGGGGGTGT 60.411 52.381 0.00 0.00 0.00 4.16
3852 6675 1.328279 GGTTTTGAGAGTTGGGGGTG 58.672 55.000 0.00 0.00 0.00 4.61
3853 6676 0.179001 CGGTTTTGAGAGTTGGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
3854 6677 0.893727 CCGGTTTTGAGAGTTGGGGG 60.894 60.000 0.00 0.00 0.00 5.40
3855 6678 1.524008 GCCGGTTTTGAGAGTTGGGG 61.524 60.000 1.90 0.00 0.00 4.96
3856 6679 1.524008 GGCCGGTTTTGAGAGTTGGG 61.524 60.000 1.90 0.00 0.00 4.12
3857 6680 0.821711 TGGCCGGTTTTGAGAGTTGG 60.822 55.000 1.90 0.00 0.00 3.77
3858 6681 1.247567 ATGGCCGGTTTTGAGAGTTG 58.752 50.000 1.90 0.00 0.00 3.16
3859 6682 2.871096 TATGGCCGGTTTTGAGAGTT 57.129 45.000 1.90 0.00 0.00 3.01
3860 6683 2.871096 TTATGGCCGGTTTTGAGAGT 57.129 45.000 1.90 0.00 0.00 3.24
3861 6684 3.694072 TGAATTATGGCCGGTTTTGAGAG 59.306 43.478 1.90 0.00 0.00 3.20
3862 6685 3.691575 TGAATTATGGCCGGTTTTGAGA 58.308 40.909 1.90 0.00 0.00 3.27
3863 6686 4.173256 GTTGAATTATGGCCGGTTTTGAG 58.827 43.478 1.90 0.00 0.00 3.02
3864 6687 3.056465 GGTTGAATTATGGCCGGTTTTGA 60.056 43.478 1.90 0.00 0.00 2.69
3865 6688 3.258228 GGTTGAATTATGGCCGGTTTTG 58.742 45.455 1.90 0.00 0.00 2.44
3866 6689 2.235155 GGGTTGAATTATGGCCGGTTTT 59.765 45.455 1.90 0.00 0.00 2.43
3867 6690 1.828595 GGGTTGAATTATGGCCGGTTT 59.171 47.619 1.90 0.00 0.00 3.27
3868 6691 1.006639 AGGGTTGAATTATGGCCGGTT 59.993 47.619 1.90 0.00 0.00 4.44
3869 6692 0.629058 AGGGTTGAATTATGGCCGGT 59.371 50.000 1.90 0.00 0.00 5.28
3870 6693 1.318576 GAGGGTTGAATTATGGCCGG 58.681 55.000 0.00 0.00 0.00 6.13
3871 6694 1.318576 GGAGGGTTGAATTATGGCCG 58.681 55.000 0.00 0.00 0.00 6.13
3872 6695 1.704641 GGGAGGGTTGAATTATGGCC 58.295 55.000 0.00 0.00 0.00 5.36
3873 6696 1.217942 AGGGGAGGGTTGAATTATGGC 59.782 52.381 0.00 0.00 0.00 4.40
3874 6697 2.158460 GGAGGGGAGGGTTGAATTATGG 60.158 54.545 0.00 0.00 0.00 2.74
3875 6698 2.158460 GGGAGGGGAGGGTTGAATTATG 60.158 54.545 0.00 0.00 0.00 1.90
3876 6699 2.144450 GGGAGGGGAGGGTTGAATTAT 58.856 52.381 0.00 0.00 0.00 1.28
3877 6700 1.603634 GGGAGGGGAGGGTTGAATTA 58.396 55.000 0.00 0.00 0.00 1.40
3878 6701 1.221909 GGGGAGGGGAGGGTTGAATT 61.222 60.000 0.00 0.00 0.00 2.17
3879 6702 1.622752 GGGGAGGGGAGGGTTGAAT 60.623 63.158 0.00 0.00 0.00 2.57
3880 6703 2.204244 GGGGAGGGGAGGGTTGAA 60.204 66.667 0.00 0.00 0.00 2.69
3881 6704 2.446337 AATGGGGAGGGGAGGGTTGA 62.446 60.000 0.00 0.00 0.00 3.18
3882 6705 1.935931 AATGGGGAGGGGAGGGTTG 60.936 63.158 0.00 0.00 0.00 3.77
3883 6706 1.935931 CAATGGGGAGGGGAGGGTT 60.936 63.158 0.00 0.00 0.00 4.11
3884 6707 2.287194 CAATGGGGAGGGGAGGGT 60.287 66.667 0.00 0.00 0.00 4.34
3885 6708 2.044450 TCAATGGGGAGGGGAGGG 59.956 66.667 0.00 0.00 0.00 4.30
3886 6709 2.386935 GGTCAATGGGGAGGGGAGG 61.387 68.421 0.00 0.00 0.00 4.30
3887 6710 2.746375 CGGTCAATGGGGAGGGGAG 61.746 68.421 0.00 0.00 0.00 4.30
3888 6711 2.690881 CGGTCAATGGGGAGGGGA 60.691 66.667 0.00 0.00 0.00 4.81
3889 6712 3.809013 CCGGTCAATGGGGAGGGG 61.809 72.222 0.00 0.00 0.00 4.79
3890 6713 2.150014 AAACCGGTCAATGGGGAGGG 62.150 60.000 8.04 0.00 0.00 4.30
3891 6714 0.251608 AAAACCGGTCAATGGGGAGG 60.252 55.000 8.04 0.00 0.00 4.30
3892 6715 0.887933 CAAAACCGGTCAATGGGGAG 59.112 55.000 8.04 0.00 0.00 4.30
3893 6716 0.478942 TCAAAACCGGTCAATGGGGA 59.521 50.000 8.04 0.00 0.00 4.81
3894 6717 0.601057 GTCAAAACCGGTCAATGGGG 59.399 55.000 8.04 0.00 0.00 4.96
3895 6718 0.601057 GGTCAAAACCGGTCAATGGG 59.399 55.000 8.04 0.00 35.36 4.00
3905 6728 0.666374 CCAGTCAACGGGTCAAAACC 59.334 55.000 0.00 0.00 45.65 3.27
3906 6729 0.666374 CCCAGTCAACGGGTCAAAAC 59.334 55.000 0.00 0.00 39.05 2.43
3907 6730 1.104577 GCCCAGTCAACGGGTCAAAA 61.105 55.000 10.39 0.00 46.40 2.44
3908 6731 1.527380 GCCCAGTCAACGGGTCAAA 60.527 57.895 10.39 0.00 46.40 2.69
3909 6732 2.112297 GCCCAGTCAACGGGTCAA 59.888 61.111 10.39 0.00 46.40 3.18
3910 6733 4.308458 CGCCCAGTCAACGGGTCA 62.308 66.667 10.39 0.00 46.40 4.02
3911 6734 3.524648 TTCGCCCAGTCAACGGGTC 62.525 63.158 10.39 0.00 46.40 4.46
3912 6735 3.552384 TTCGCCCAGTCAACGGGT 61.552 61.111 10.39 0.00 46.40 5.28
3914 6737 2.280524 TGTTCGCCCAGTCAACGG 60.281 61.111 0.00 0.00 0.00 4.44
3915 6738 0.319211 TACTGTTCGCCCAGTCAACG 60.319 55.000 9.65 0.00 44.36 4.10
3916 6739 1.873698 TTACTGTTCGCCCAGTCAAC 58.126 50.000 9.65 0.00 44.36 3.18
3917 6740 2.623878 TTTACTGTTCGCCCAGTCAA 57.376 45.000 9.65 4.00 44.36 3.18
3918 6741 2.851263 ATTTACTGTTCGCCCAGTCA 57.149 45.000 9.65 0.00 44.36 3.41
3919 6742 3.071479 TGAATTTACTGTTCGCCCAGTC 58.929 45.455 9.65 0.00 44.36 3.51
3920 6743 3.134574 TGAATTTACTGTTCGCCCAGT 57.865 42.857 10.89 10.89 46.94 4.00
3921 6744 4.701956 AATGAATTTACTGTTCGCCCAG 57.298 40.909 0.29 0.29 38.45 4.45
3922 6745 5.461032 AAAATGAATTTACTGTTCGCCCA 57.539 34.783 0.00 0.00 0.00 5.36
3983 6806 5.221087 GGATTACTGTTCACCCGTTGAAAAA 60.221 40.000 0.00 0.00 46.09 1.94
3984 6807 4.276431 GGATTACTGTTCACCCGTTGAAAA 59.724 41.667 0.00 0.00 46.09 2.29
3985 6808 3.816523 GGATTACTGTTCACCCGTTGAAA 59.183 43.478 0.00 0.00 46.09 2.69
3986 6809 3.404899 GGATTACTGTTCACCCGTTGAA 58.595 45.455 0.00 0.00 42.26 2.69
3987 6810 2.289819 GGGATTACTGTTCACCCGTTGA 60.290 50.000 0.00 0.00 0.00 3.18
3988 6811 2.081462 GGGATTACTGTTCACCCGTTG 58.919 52.381 0.00 0.00 0.00 4.10
3989 6812 1.700739 TGGGATTACTGTTCACCCGTT 59.299 47.619 0.00 0.00 43.04 4.44
3990 6813 1.354101 TGGGATTACTGTTCACCCGT 58.646 50.000 0.00 0.00 43.04 5.28
3991 6814 2.483014 TTGGGATTACTGTTCACCCG 57.517 50.000 0.00 0.00 43.04 5.28
4012 6835 9.567776 TTTCTTTTTCCTTTCTTCAACCTTTTT 57.432 25.926 0.00 0.00 0.00 1.94
4013 6836 9.739276 ATTTCTTTTTCCTTTCTTCAACCTTTT 57.261 25.926 0.00 0.00 0.00 2.27
4014 6837 9.383519 GATTTCTTTTTCCTTTCTTCAACCTTT 57.616 29.630 0.00 0.00 0.00 3.11
4015 6838 8.539544 TGATTTCTTTTTCCTTTCTTCAACCTT 58.460 29.630 0.00 0.00 0.00 3.50
4016 6839 8.078060 TGATTTCTTTTTCCTTTCTTCAACCT 57.922 30.769 0.00 0.00 0.00 3.50
4017 6840 8.716646 TTGATTTCTTTTTCCTTTCTTCAACC 57.283 30.769 0.00 0.00 0.00 3.77
4053 6876 9.959749 GAATTCACTGTTCACCTAATAAAAACA 57.040 29.630 0.00 0.00 0.00 2.83
4054 6877 9.959749 TGAATTCACTGTTCACCTAATAAAAAC 57.040 29.630 3.38 0.00 31.07 2.43
4150 6973 1.269726 ACAAGCTCAAAATTGGCACGG 60.270 47.619 0.00 2.25 0.00 4.94
4154 6977 2.061028 CCGAACAAGCTCAAAATTGGC 58.939 47.619 0.00 0.00 0.00 4.52
4163 6986 0.108804 TCCGATGTCCGAACAAGCTC 60.109 55.000 0.00 0.00 39.30 4.09
4166 6989 2.798680 CTACTCCGATGTCCGAACAAG 58.201 52.381 0.00 0.00 39.30 3.16
4358 7333 2.081462 CAGTTGACCGGTATTTGACCC 58.919 52.381 7.34 0.00 46.81 4.46
4366 7341 1.129917 TTTGACCCAGTTGACCGGTA 58.870 50.000 7.34 0.00 0.00 4.02
4367 7342 0.256464 TTTTGACCCAGTTGACCGGT 59.744 50.000 6.92 6.92 0.00 5.28
4368 7343 0.666374 GTTTTGACCCAGTTGACCGG 59.334 55.000 0.00 0.00 0.00 5.28
4369 7344 0.666374 GGTTTTGACCCAGTTGACCG 59.334 55.000 0.00 0.00 0.00 4.79
4389 7364 1.305381 CCTCCCCTCCTCGTTGACT 60.305 63.158 0.00 0.00 0.00 3.41
4417 7392 1.766496 TCCAACTCTCAAAACCGGTCT 59.234 47.619 8.04 0.00 0.00 3.85
4419 7394 1.202770 CCTCCAACTCTCAAAACCGGT 60.203 52.381 0.00 0.00 0.00 5.28
4435 7410 2.827921 TCCCGTCTAGTTTACAACCTCC 59.172 50.000 0.00 0.00 0.00 4.30
4437 7412 4.323257 CCAATCCCGTCTAGTTTACAACCT 60.323 45.833 0.00 0.00 0.00 3.50
4440 7415 4.529377 ACTCCAATCCCGTCTAGTTTACAA 59.471 41.667 0.00 0.00 0.00 2.41
4452 7427 2.275418 CCCCCAACTCCAATCCCG 59.725 66.667 0.00 0.00 0.00 5.14
4481 7456 1.218196 CCCCTCAACTCTAGCCCTAGA 59.782 57.143 5.04 5.04 39.67 2.43
4617 7592 6.080009 TGGATATAACACCCTCCTAAGGTAC 58.920 44.000 0.00 0.00 41.59 3.34
5428 8413 9.222916 GAGTTTTCTTTAGCAAACTAACAGAAC 57.777 33.333 7.36 0.00 40.55 3.01
5521 8507 9.436957 AGTACAATACAGATCAAACTTAACTGG 57.563 33.333 0.00 0.00 33.57 4.00
5602 8589 7.865706 ACCTAACAAGCACCTTGAATAATAG 57.134 36.000 11.56 6.01 43.42 1.73
5686 8673 7.379529 CGTTGAAATGCTGAAATTTTCTACTGT 59.620 33.333 10.33 0.00 34.86 3.55
5687 8674 7.591057 TCGTTGAAATGCTGAAATTTTCTACTG 59.409 33.333 10.33 0.65 34.86 2.74
5711 8698 6.315144 TCACTATAAACACATCCAACCAATCG 59.685 38.462 0.00 0.00 0.00 3.34
5746 8733 2.902705 TACGCAAATGCTACCCCTAG 57.097 50.000 3.63 0.00 39.32 3.02
5807 8794 2.097825 ACCATCCTGAAATCTGCAAGC 58.902 47.619 0.00 0.00 0.00 4.01
5965 8952 0.329261 TCTAGCAGCATTGGCCAACT 59.671 50.000 23.27 15.53 42.56 3.16
5985 8972 3.205282 AGCCTCCCCTTAACATAAGCATT 59.795 43.478 0.00 0.00 0.00 3.56
6020 9007 1.746615 CAGCCGGTCCATGAACTGG 60.747 63.158 5.38 5.38 46.74 4.00
6053 9040 4.505556 GCTTATGCAGCTTGCCTTAATTTC 59.494 41.667 0.00 0.00 46.27 2.17
6124 9111 3.330701 AGCATGACGGTCCCCATAATAAT 59.669 43.478 5.55 0.00 0.00 1.28
6125 9112 2.708861 AGCATGACGGTCCCCATAATAA 59.291 45.455 5.55 0.00 0.00 1.40
6126 9113 2.301870 GAGCATGACGGTCCCCATAATA 59.698 50.000 5.55 0.00 36.04 0.98
6275 9265 5.708230 GGGCATGGTATGTTCGGAATATAAA 59.292 40.000 8.51 2.23 0.00 1.40
6365 9357 5.825593 ACAAGGACAAGGACAAGAAGATA 57.174 39.130 0.00 0.00 0.00 1.98
6366 9358 4.713792 ACAAGGACAAGGACAAGAAGAT 57.286 40.909 0.00 0.00 0.00 2.40
6367 9359 4.503714 AACAAGGACAAGGACAAGAAGA 57.496 40.909 0.00 0.00 0.00 2.87
6370 9362 5.063204 CACATAACAAGGACAAGGACAAGA 58.937 41.667 0.00 0.00 0.00 3.02
6371 9363 4.216257 CCACATAACAAGGACAAGGACAAG 59.784 45.833 0.00 0.00 0.00 3.16
6372 9364 4.141287 CCACATAACAAGGACAAGGACAA 58.859 43.478 0.00 0.00 0.00 3.18
6375 9367 2.107378 TGCCACATAACAAGGACAAGGA 59.893 45.455 0.00 0.00 0.00 3.36
6376 9368 2.513753 TGCCACATAACAAGGACAAGG 58.486 47.619 0.00 0.00 0.00 3.61
6377 9369 4.298332 GTTTGCCACATAACAAGGACAAG 58.702 43.478 0.00 0.00 0.00 3.16
6378 9370 3.068873 GGTTTGCCACATAACAAGGACAA 59.931 43.478 0.00 0.00 34.09 3.18
6380 9372 2.351350 CGGTTTGCCACATAACAAGGAC 60.351 50.000 0.00 0.00 34.09 3.85
6381 9373 1.883275 CGGTTTGCCACATAACAAGGA 59.117 47.619 0.00 0.00 34.09 3.36
6382 9374 1.611491 ACGGTTTGCCACATAACAAGG 59.389 47.619 0.00 0.00 34.09 3.61
6383 9375 3.363341 AACGGTTTGCCACATAACAAG 57.637 42.857 0.00 0.00 34.09 3.16
6421 9428 0.605319 GTCATTCACGGCACCAAGGA 60.605 55.000 0.00 0.00 0.00 3.36
6422 9429 0.888736 TGTCATTCACGGCACCAAGG 60.889 55.000 0.00 0.00 0.00 3.61
6423 9430 0.950836 TTGTCATTCACGGCACCAAG 59.049 50.000 0.00 0.00 0.00 3.61
6424 9431 1.539388 GATTGTCATTCACGGCACCAA 59.461 47.619 0.00 0.00 0.00 3.67
6430 9437 4.229096 CCAAAACAGATTGTCATTCACGG 58.771 43.478 0.00 0.00 0.00 4.94
6431 9438 3.670055 GCCAAAACAGATTGTCATTCACG 59.330 43.478 0.00 0.00 0.00 4.35
6432 9439 4.619973 TGCCAAAACAGATTGTCATTCAC 58.380 39.130 0.00 0.00 0.00 3.18
6435 9442 4.344679 TCCTTGCCAAAACAGATTGTCATT 59.655 37.500 0.00 0.00 0.00 2.57
6466 9473 6.429791 TCATTTGACGAGACAAGAACAAAA 57.570 33.333 0.00 0.00 32.51 2.44
6474 9481 6.650390 TCATTTCTCATCATTTGACGAGACAA 59.350 34.615 5.88 5.23 42.22 3.18
6482 9489 6.809689 GCACAATGTCATTTCTCATCATTTGA 59.190 34.615 0.00 0.00 0.00 2.69
6483 9490 6.035650 GGCACAATGTCATTTCTCATCATTTG 59.964 38.462 0.00 0.00 0.00 2.32
6557 9566 9.643735 TGGAGTTAAAACTGGTTATTCCTTTTA 57.356 29.630 0.00 0.00 39.88 1.52
6610 9619 2.677228 CCAAGGAATCTGGGCGGT 59.323 61.111 0.00 0.00 0.00 5.68
6611 9620 1.999634 ATCCCAAGGAATCTGGGCGG 62.000 60.000 2.87 0.00 42.46 6.13
6612 9621 0.536006 GATCCCAAGGAATCTGGGCG 60.536 60.000 2.87 0.00 42.46 6.13
6613 9622 0.536006 CGATCCCAAGGAATCTGGGC 60.536 60.000 2.87 0.00 42.46 5.36
6614 9623 0.536006 GCGATCCCAAGGAATCTGGG 60.536 60.000 1.36 1.36 44.06 4.45
6615 9624 0.181114 TGCGATCCCAAGGAATCTGG 59.819 55.000 0.00 0.00 34.34 3.86
6616 9625 1.878088 CATGCGATCCCAAGGAATCTG 59.122 52.381 0.00 0.00 34.34 2.90
6617 9626 1.770658 TCATGCGATCCCAAGGAATCT 59.229 47.619 0.00 0.00 34.34 2.40
6618 9627 2.260844 TCATGCGATCCCAAGGAATC 57.739 50.000 0.00 0.00 34.34 2.52
6621 9630 1.770658 AGAATCATGCGATCCCAAGGA 59.229 47.619 0.00 0.00 35.55 3.36
6623 9632 1.797046 CGAGAATCATGCGATCCCAAG 59.203 52.381 0.00 0.00 33.17 3.61
6624 9633 1.869774 CGAGAATCATGCGATCCCAA 58.130 50.000 0.00 0.00 33.17 4.12
6625 9634 0.601046 GCGAGAATCATGCGATCCCA 60.601 55.000 0.00 0.00 33.17 4.37
6626 9635 0.601046 TGCGAGAATCATGCGATCCC 60.601 55.000 0.00 0.00 33.17 3.85
6627 9636 0.788995 CTGCGAGAATCATGCGATCC 59.211 55.000 0.00 0.00 33.17 3.36
6628 9637 0.788995 CCTGCGAGAATCATGCGATC 59.211 55.000 0.00 0.00 33.17 3.69
6629 9638 0.390492 TCCTGCGAGAATCATGCGAT 59.610 50.000 0.00 0.00 33.17 4.58
6630 9639 0.390492 ATCCTGCGAGAATCATGCGA 59.610 50.000 0.00 0.00 33.17 5.10
6631 9640 0.788995 GATCCTGCGAGAATCATGCG 59.211 55.000 0.00 0.00 33.17 4.73
6632 9641 1.875009 TGATCCTGCGAGAATCATGC 58.125 50.000 0.00 0.00 33.17 4.06
6633 9642 4.888038 TTTTGATCCTGCGAGAATCATG 57.112 40.909 0.00 0.00 33.17 3.07
7078 10087 3.971894 CCCCCTGCTCGATAACCT 58.028 61.111 0.00 0.00 0.00 3.50
7092 10101 0.480252 CTTCCATTCATCCCTCCCCC 59.520 60.000 0.00 0.00 0.00 5.40
7093 10102 1.522900 TCTTCCATTCATCCCTCCCC 58.477 55.000 0.00 0.00 0.00 4.81
7094 10103 3.891805 AATCTTCCATTCATCCCTCCC 57.108 47.619 0.00 0.00 0.00 4.30
7095 10104 6.607198 TGTTAAAATCTTCCATTCATCCCTCC 59.393 38.462 0.00 0.00 0.00 4.30
7096 10105 7.645058 TGTTAAAATCTTCCATTCATCCCTC 57.355 36.000 0.00 0.00 0.00 4.30
7097 10106 7.675619 ACTTGTTAAAATCTTCCATTCATCCCT 59.324 33.333 0.00 0.00 0.00 4.20
7098 10107 7.840931 ACTTGTTAAAATCTTCCATTCATCCC 58.159 34.615 0.00 0.00 0.00 3.85
7099 10108 9.358872 GAACTTGTTAAAATCTTCCATTCATCC 57.641 33.333 0.00 0.00 0.00 3.51
7100 10109 9.358872 GGAACTTGTTAAAATCTTCCATTCATC 57.641 33.333 0.00 0.00 0.00 2.92
7101 10110 9.093458 AGGAACTTGTTAAAATCTTCCATTCAT 57.907 29.630 5.16 0.00 27.25 2.57
7102 10111 8.477419 AGGAACTTGTTAAAATCTTCCATTCA 57.523 30.769 5.16 0.00 27.25 2.57
7177 10493 0.926293 TTCCATTCACCCATCCCCTC 59.074 55.000 0.00 0.00 0.00 4.30
7178 10494 1.392407 TTTCCATTCACCCATCCCCT 58.608 50.000 0.00 0.00 0.00 4.79
7182 10498 5.792741 TGTTGAAATTTCCATTCACCCATC 58.207 37.500 15.48 0.00 36.57 3.51
7183 10499 5.822132 TGTTGAAATTTCCATTCACCCAT 57.178 34.783 15.48 0.00 36.57 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.