Multiple sequence alignment - TraesCS3D01G297600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G297600 chr3D 100.000 3958 0 0 1 3958 411005965 411002008 0.000000e+00 7310
1 TraesCS3D01G297600 chr3B 94.622 3496 123 29 160 3622 537470119 537466656 0.000000e+00 5354
2 TraesCS3D01G297600 chr3A 94.687 3388 123 22 273 3622 540653930 540657298 0.000000e+00 5206
3 TraesCS3D01G297600 chr3A 89.671 213 19 3 2 214 540653384 540653593 6.520000e-68 268
4 TraesCS3D01G297600 chr7D 95.322 342 11 3 3621 3958 166256200 166256540 4.500000e-149 538
5 TraesCS3D01G297600 chr5D 95.808 334 13 1 3626 3958 4044350 4044017 4.500000e-149 538
6 TraesCS3D01G297600 chr5B 95.252 337 13 3 3625 3958 533040558 533040222 7.530000e-147 531
7 TraesCS3D01G297600 chr2B 95.252 337 12 4 3625 3958 674299026 674298691 7.530000e-147 531
8 TraesCS3D01G297600 chr2B 94.643 336 16 2 3625 3958 135687132 135687467 1.630000e-143 520
9 TraesCS3D01G297600 chr1D 95.224 335 14 2 3626 3958 75931844 75932178 2.710000e-146 529
10 TraesCS3D01G297600 chr6D 94.940 336 14 2 3626 3958 25497134 25497469 1.260000e-144 523
11 TraesCS3D01G297600 chr7B 94.690 339 13 4 3624 3958 683056774 683056437 4.530000e-144 521
12 TraesCS3D01G297600 chr7B 94.659 337 14 4 3625 3958 491927189 491926854 1.630000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G297600 chr3D 411002008 411005965 3957 True 7310 7310 100.000 1 3958 1 chr3D.!!$R1 3957
1 TraesCS3D01G297600 chr3B 537466656 537470119 3463 True 5354 5354 94.622 160 3622 1 chr3B.!!$R1 3462
2 TraesCS3D01G297600 chr3A 540653384 540657298 3914 False 2737 5206 92.179 2 3622 2 chr3A.!!$F1 3620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 854 0.179156 CCTGCATTCCAACGACATGC 60.179 55.0 0.00 0.00 43.13 4.06 F
1270 1630 0.101759 TCGTATACCTCACCAAGCGC 59.898 55.0 0.00 0.00 0.00 5.92 F
1274 1634 0.102481 ATACCTCACCAAGCGCTACG 59.898 55.0 12.05 6.16 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2226 1.143620 GAAGAGCATGAGAGCGGCT 59.856 57.895 0.0 0.0 41.35 5.52 R
2612 2976 2.145397 AGTAGAACTCGATCTGCCCA 57.855 50.000 0.0 0.0 33.07 5.36 R
2999 3363 2.170985 CGCAAGGTCAAACGAGCG 59.829 61.111 0.0 0.0 39.17 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.645059 TGAGAAGATTTGAGTGAGTTAATACAG 57.355 33.333 0.00 0.00 0.00 2.74
45 46 9.431887 GAGTGAGTTAATACAGAACATGGTTTA 57.568 33.333 0.00 0.00 0.00 2.01
58 59 7.495934 CAGAACATGGTTTATAGTAGGACAAGG 59.504 40.741 0.00 0.00 0.00 3.61
459 788 0.516877 TTGCGCAACCAAATCTCTCG 59.483 50.000 21.02 0.00 0.00 4.04
473 802 0.534412 CTCTCGTCTCATGGTTGGCT 59.466 55.000 0.00 0.00 0.00 4.75
474 803 0.247460 TCTCGTCTCATGGTTGGCTG 59.753 55.000 0.00 0.00 0.00 4.85
476 805 2.401766 CGTCTCATGGTTGGCTGGC 61.402 63.158 0.00 0.00 0.00 4.85
477 806 1.303561 GTCTCATGGTTGGCTGGCA 60.304 57.895 0.00 0.00 0.00 4.92
481 810 2.284112 ATGGTTGGCTGGCAAGGG 60.284 61.111 17.57 0.00 0.00 3.95
482 811 2.855770 ATGGTTGGCTGGCAAGGGA 61.856 57.895 17.57 4.51 0.00 4.20
483 812 2.677875 GGTTGGCTGGCAAGGGAG 60.678 66.667 17.57 0.00 0.00 4.30
484 813 2.677875 GTTGGCTGGCAAGGGAGG 60.678 66.667 17.57 0.00 0.00 4.30
514 843 2.159476 TGACGTACGAGTACCTGCATTC 60.159 50.000 24.41 4.67 32.61 2.67
525 854 0.179156 CCTGCATTCCAACGACATGC 60.179 55.000 0.00 0.00 43.13 4.06
606 943 2.175202 AGCCCCATCAGATAGATCGTC 58.825 52.381 0.00 0.00 33.72 4.20
607 944 1.205893 GCCCCATCAGATAGATCGTCC 59.794 57.143 0.00 0.00 33.72 4.79
608 945 1.474478 CCCCATCAGATAGATCGTCCG 59.526 57.143 0.00 0.00 33.72 4.79
609 946 1.474478 CCCATCAGATAGATCGTCCGG 59.526 57.143 0.00 0.00 33.72 5.14
797 1140 9.640952 TTCTTCTCTTTTTCTAATCCCTTTTCA 57.359 29.630 0.00 0.00 0.00 2.69
801 1144 8.796475 TCTCTTTTTCTAATCCCTTTTCATGTG 58.204 33.333 0.00 0.00 0.00 3.21
802 1145 7.378181 TCTTTTTCTAATCCCTTTTCATGTGC 58.622 34.615 0.00 0.00 0.00 4.57
807 1150 6.189859 TCTAATCCCTTTTCATGTGCATCTT 58.810 36.000 0.00 0.00 0.00 2.40
816 1159 0.251354 ATGTGCATCTTCGGTGAGCT 59.749 50.000 0.00 0.00 0.00 4.09
843 1186 3.320879 ATCACTGGTCAGCTGCCCG 62.321 63.158 20.12 17.02 0.00 6.13
869 1212 4.882396 GCCTCGCTCGGCCTCTTC 62.882 72.222 0.00 0.00 44.41 2.87
901 1244 1.507140 ATACAAAGCATCTCCCGGGA 58.493 50.000 25.06 25.06 0.00 5.14
1026 1381 3.008517 TCGGCCATGGAGGAAGCA 61.009 61.111 18.40 0.00 41.22 3.91
1135 1490 3.343617 TCATGCACCTTAGTTAGCCAAC 58.656 45.455 0.00 0.00 34.67 3.77
1151 1511 1.535462 CCAACTTCCCTTTGCTGTACG 59.465 52.381 0.00 0.00 0.00 3.67
1183 1543 3.029570 CTCATGAGATGACACCCTCTGA 58.970 50.000 18.34 7.78 35.06 3.27
1270 1630 0.101759 TCGTATACCTCACCAAGCGC 59.898 55.000 0.00 0.00 0.00 5.92
1274 1634 0.102481 ATACCTCACCAAGCGCTACG 59.898 55.000 12.05 6.16 0.00 3.51
1709 2073 2.846371 GCTGGACAAGCGAGACAAT 58.154 52.632 0.00 0.00 43.45 2.71
1862 2226 2.494445 CCCGTCGTGCTCATGCTA 59.506 61.111 0.00 0.00 40.48 3.49
1910 2274 0.605319 CGCCTTTGTACCTCAAGGCA 60.605 55.000 27.45 0.00 43.62 4.75
1980 2344 3.636313 TACAAGAACCGGCGCGAGG 62.636 63.158 12.10 15.64 0.00 4.63
2528 2892 2.674220 GGAGGGCTTCCAGGACCAG 61.674 68.421 11.31 0.00 46.01 4.00
2531 2895 0.772124 AGGGCTTCCAGGACCAGAAA 60.772 55.000 0.00 0.00 36.69 2.52
2542 2906 3.353836 CCAGAAACACGCGGTGGG 61.354 66.667 12.47 0.00 37.94 4.61
2612 2976 1.289109 CCGACGCGTTGAACCTGATT 61.289 55.000 27.96 0.00 0.00 2.57
2650 3014 1.751924 CTACTCCGAGTTCCCCAAGAG 59.248 57.143 6.31 0.00 0.00 2.85
2853 3217 0.872388 GGCCAACTTGGTGTACTTCG 59.128 55.000 9.63 0.00 40.46 3.79
3040 3404 3.839051 GCCTTTCTCTCTTGCGAAATT 57.161 42.857 0.00 0.00 0.00 1.82
3041 3405 3.496155 GCCTTTCTCTCTTGCGAAATTG 58.504 45.455 0.00 0.00 0.00 2.32
3042 3406 3.496155 CCTTTCTCTCTTGCGAAATTGC 58.504 45.455 0.00 0.00 0.00 3.56
3043 3407 3.190118 CCTTTCTCTCTTGCGAAATTGCT 59.810 43.478 0.00 0.00 35.36 3.91
3044 3408 3.818961 TTCTCTCTTGCGAAATTGCTG 57.181 42.857 0.00 0.00 35.36 4.41
3045 3409 3.044235 TCTCTCTTGCGAAATTGCTGA 57.956 42.857 0.00 0.00 35.36 4.26
3046 3410 3.402110 TCTCTCTTGCGAAATTGCTGAA 58.598 40.909 0.00 0.00 35.36 3.02
3047 3411 4.005650 TCTCTCTTGCGAAATTGCTGAAT 58.994 39.130 0.00 0.00 35.36 2.57
3048 3412 4.456911 TCTCTCTTGCGAAATTGCTGAATT 59.543 37.500 0.00 0.00 32.87 2.17
3049 3413 4.478699 TCTCTTGCGAAATTGCTGAATTG 58.521 39.130 0.00 0.00 31.83 2.32
3184 3557 8.810652 TGTGTTGAGTAAATTAGCAATTTTCC 57.189 30.769 10.66 4.82 41.16 3.13
3318 3706 8.629821 ACATATTATATCTTCCAGTAGGCCAT 57.370 34.615 5.01 0.00 33.74 4.40
3328 3716 2.290260 CCAGTAGGCCATGACAAAGTCA 60.290 50.000 5.01 1.95 46.90 3.41
3335 3723 1.070786 ATGACAAAGTCACGGCGGT 59.929 52.632 13.24 0.00 45.65 5.68
3392 3780 7.201767 GGCAGCTTCATAGTTTTCATCAATAGT 60.202 37.037 0.00 0.00 0.00 2.12
3404 3792 5.791336 TCATCAATAGTAATGCGGAGAGT 57.209 39.130 0.00 0.00 0.00 3.24
3405 3793 6.161855 TCATCAATAGTAATGCGGAGAGTT 57.838 37.500 0.00 0.00 0.00 3.01
3415 3803 1.148759 GCGGAGAGTTTCGAGGATGC 61.149 60.000 0.00 0.00 0.00 3.91
3420 3808 1.135257 AGAGTTTCGAGGATGCAGTCG 60.135 52.381 9.09 9.09 37.54 4.18
3568 3961 2.506217 CGCACGCGCCTTTCTCTA 60.506 61.111 5.73 0.00 33.11 2.43
3645 4039 3.233953 AAAAAGGTTTCCCCCGCTT 57.766 47.368 0.00 0.00 0.00 4.68
3646 4040 1.502690 AAAAAGGTTTCCCCCGCTTT 58.497 45.000 0.00 0.00 0.00 3.51
3647 4041 2.385135 AAAAGGTTTCCCCCGCTTTA 57.615 45.000 0.00 0.00 0.00 1.85
3648 4042 2.615986 AAAGGTTTCCCCCGCTTTAT 57.384 45.000 0.00 0.00 0.00 1.40
3649 4043 3.743092 AAAGGTTTCCCCCGCTTTATA 57.257 42.857 0.00 0.00 0.00 0.98
3650 4044 3.965470 AAGGTTTCCCCCGCTTTATAT 57.035 42.857 0.00 0.00 0.00 0.86
3651 4045 5.391577 AAAGGTTTCCCCCGCTTTATATA 57.608 39.130 0.00 0.00 0.00 0.86
3652 4046 5.594199 AAGGTTTCCCCCGCTTTATATAT 57.406 39.130 0.00 0.00 0.00 0.86
3653 4047 6.707273 AAGGTTTCCCCCGCTTTATATATA 57.293 37.500 0.00 0.00 0.00 0.86
3654 4048 6.707273 AGGTTTCCCCCGCTTTATATATAA 57.293 37.500 0.81 0.81 0.00 0.98
3655 4049 7.093965 AGGTTTCCCCCGCTTTATATATAAA 57.906 36.000 15.47 15.47 0.00 1.40
3673 4067 5.897377 ATAAAGCACCAACACTTACATCC 57.103 39.130 0.00 0.00 0.00 3.51
3674 4068 2.949177 AGCACCAACACTTACATCCA 57.051 45.000 0.00 0.00 0.00 3.41
3675 4069 3.222173 AGCACCAACACTTACATCCAA 57.778 42.857 0.00 0.00 0.00 3.53
3676 4070 3.149196 AGCACCAACACTTACATCCAAG 58.851 45.455 0.00 0.00 0.00 3.61
3677 4071 2.351738 GCACCAACACTTACATCCAAGC 60.352 50.000 0.00 0.00 0.00 4.01
3678 4072 2.884012 CACCAACACTTACATCCAAGCA 59.116 45.455 0.00 0.00 0.00 3.91
3679 4073 3.317711 CACCAACACTTACATCCAAGCAA 59.682 43.478 0.00 0.00 0.00 3.91
3680 4074 3.317993 ACCAACACTTACATCCAAGCAAC 59.682 43.478 0.00 0.00 0.00 4.17
3681 4075 3.305335 CCAACACTTACATCCAAGCAACC 60.305 47.826 0.00 0.00 0.00 3.77
3682 4076 2.151202 ACACTTACATCCAAGCAACCG 58.849 47.619 0.00 0.00 0.00 4.44
3683 4077 2.224426 ACACTTACATCCAAGCAACCGA 60.224 45.455 0.00 0.00 0.00 4.69
3684 4078 3.009723 CACTTACATCCAAGCAACCGAT 58.990 45.455 0.00 0.00 0.00 4.18
3685 4079 4.188462 CACTTACATCCAAGCAACCGATA 58.812 43.478 0.00 0.00 0.00 2.92
3686 4080 4.034048 CACTTACATCCAAGCAACCGATAC 59.966 45.833 0.00 0.00 0.00 2.24
3687 4081 2.779755 ACATCCAAGCAACCGATACA 57.220 45.000 0.00 0.00 0.00 2.29
3688 4082 3.066291 ACATCCAAGCAACCGATACAA 57.934 42.857 0.00 0.00 0.00 2.41
3689 4083 3.417101 ACATCCAAGCAACCGATACAAA 58.583 40.909 0.00 0.00 0.00 2.83
3690 4084 3.190535 ACATCCAAGCAACCGATACAAAC 59.809 43.478 0.00 0.00 0.00 2.93
3691 4085 1.801771 TCCAAGCAACCGATACAAACG 59.198 47.619 0.00 0.00 0.00 3.60
3692 4086 1.602191 CAAGCAACCGATACAAACGC 58.398 50.000 0.00 0.00 0.00 4.84
3693 4087 1.069568 CAAGCAACCGATACAAACGCA 60.070 47.619 0.00 0.00 0.00 5.24
3694 4088 0.515564 AGCAACCGATACAAACGCAC 59.484 50.000 0.00 0.00 0.00 5.34
3695 4089 0.787908 GCAACCGATACAAACGCACG 60.788 55.000 0.00 0.00 0.00 5.34
3696 4090 0.787908 CAACCGATACAAACGCACGC 60.788 55.000 0.00 0.00 0.00 5.34
3697 4091 1.903783 AACCGATACAAACGCACGCC 61.904 55.000 0.00 0.00 0.00 5.68
3698 4092 2.384309 CCGATACAAACGCACGCCA 61.384 57.895 0.00 0.00 0.00 5.69
3699 4093 1.225637 CGATACAAACGCACGCCAC 60.226 57.895 0.00 0.00 0.00 5.01
3700 4094 1.863491 GATACAAACGCACGCCACA 59.137 52.632 0.00 0.00 0.00 4.17
3701 4095 0.452122 GATACAAACGCACGCCACAC 60.452 55.000 0.00 0.00 0.00 3.82
3702 4096 1.160946 ATACAAACGCACGCCACACA 61.161 50.000 0.00 0.00 0.00 3.72
3703 4097 1.366854 TACAAACGCACGCCACACAA 61.367 50.000 0.00 0.00 0.00 3.33
3704 4098 2.101380 AAACGCACGCCACACAAC 59.899 55.556 0.00 0.00 0.00 3.32
3705 4099 2.403378 AAACGCACGCCACACAACT 61.403 52.632 0.00 0.00 0.00 3.16
3706 4100 2.317685 AAACGCACGCCACACAACTC 62.318 55.000 0.00 0.00 0.00 3.01
3707 4101 3.268603 CGCACGCCACACAACTCA 61.269 61.111 0.00 0.00 0.00 3.41
3708 4102 2.818487 CGCACGCCACACAACTCAA 61.818 57.895 0.00 0.00 0.00 3.02
3709 4103 1.009675 GCACGCCACACAACTCAAG 60.010 57.895 0.00 0.00 0.00 3.02
3710 4104 1.648720 CACGCCACACAACTCAAGG 59.351 57.895 0.00 0.00 0.00 3.61
3711 4105 2.186826 ACGCCACACAACTCAAGGC 61.187 57.895 0.00 0.00 41.86 4.35
3712 4106 2.186160 CGCCACACAACTCAAGGCA 61.186 57.895 0.00 0.00 45.47 4.75
3713 4107 1.723608 CGCCACACAACTCAAGGCAA 61.724 55.000 0.00 0.00 45.47 4.52
3714 4108 0.031178 GCCACACAACTCAAGGCAAG 59.969 55.000 0.00 0.00 44.59 4.01
3715 4109 1.679139 CCACACAACTCAAGGCAAGA 58.321 50.000 0.00 0.00 0.00 3.02
3716 4110 2.233271 CCACACAACTCAAGGCAAGAT 58.767 47.619 0.00 0.00 0.00 2.40
3717 4111 3.411446 CCACACAACTCAAGGCAAGATA 58.589 45.455 0.00 0.00 0.00 1.98
3718 4112 3.189287 CCACACAACTCAAGGCAAGATAC 59.811 47.826 0.00 0.00 0.00 2.24
3719 4113 3.814842 CACACAACTCAAGGCAAGATACA 59.185 43.478 0.00 0.00 0.00 2.29
3720 4114 4.275689 CACACAACTCAAGGCAAGATACAA 59.724 41.667 0.00 0.00 0.00 2.41
3721 4115 4.516698 ACACAACTCAAGGCAAGATACAAG 59.483 41.667 0.00 0.00 0.00 3.16
3722 4116 4.756642 CACAACTCAAGGCAAGATACAAGA 59.243 41.667 0.00 0.00 0.00 3.02
3723 4117 5.239306 CACAACTCAAGGCAAGATACAAGAA 59.761 40.000 0.00 0.00 0.00 2.52
3724 4118 6.006449 ACAACTCAAGGCAAGATACAAGAAT 58.994 36.000 0.00 0.00 0.00 2.40
3725 4119 6.072286 ACAACTCAAGGCAAGATACAAGAATG 60.072 38.462 0.00 0.00 0.00 2.67
3726 4120 4.397417 ACTCAAGGCAAGATACAAGAATGC 59.603 41.667 0.00 0.00 36.31 3.56
3728 4122 2.763249 GGCAAGATACAAGAATGCCG 57.237 50.000 0.00 0.00 46.11 5.69
3729 4123 1.334869 GGCAAGATACAAGAATGCCGG 59.665 52.381 0.00 0.00 46.11 6.13
3730 4124 1.334869 GCAAGATACAAGAATGCCGGG 59.665 52.381 2.18 0.00 0.00 5.73
3731 4125 1.334869 CAAGATACAAGAATGCCGGGC 59.665 52.381 13.32 13.32 0.00 6.13
3732 4126 0.546122 AGATACAAGAATGCCGGGCA 59.454 50.000 26.11 26.11 44.86 5.36
3733 4127 0.663153 GATACAAGAATGCCGGGCAC 59.337 55.000 26.48 13.10 43.04 5.01
3745 4139 3.284449 GGGCACCGACACACAACC 61.284 66.667 0.00 0.00 40.86 3.77
3746 4140 2.203153 GGCACCGACACACAACCT 60.203 61.111 0.00 0.00 0.00 3.50
3747 4141 2.251642 GGCACCGACACACAACCTC 61.252 63.158 0.00 0.00 0.00 3.85
3748 4142 1.522806 GCACCGACACACAACCTCA 60.523 57.895 0.00 0.00 0.00 3.86
3749 4143 1.092921 GCACCGACACACAACCTCAA 61.093 55.000 0.00 0.00 0.00 3.02
3750 4144 0.655733 CACCGACACACAACCTCAAC 59.344 55.000 0.00 0.00 0.00 3.18
3751 4145 0.808453 ACCGACACACAACCTCAACG 60.808 55.000 0.00 0.00 0.00 4.10
3752 4146 0.528901 CCGACACACAACCTCAACGA 60.529 55.000 0.00 0.00 0.00 3.85
3753 4147 0.575390 CGACACACAACCTCAACGAC 59.425 55.000 0.00 0.00 0.00 4.34
3754 4148 1.801395 CGACACACAACCTCAACGACT 60.801 52.381 0.00 0.00 0.00 4.18
3755 4149 2.542205 CGACACACAACCTCAACGACTA 60.542 50.000 0.00 0.00 0.00 2.59
3756 4150 2.793232 GACACACAACCTCAACGACTAC 59.207 50.000 0.00 0.00 0.00 2.73
3757 4151 2.132762 CACACAACCTCAACGACTACC 58.867 52.381 0.00 0.00 0.00 3.18
3758 4152 1.758280 ACACAACCTCAACGACTACCA 59.242 47.619 0.00 0.00 0.00 3.25
3759 4153 2.168936 ACACAACCTCAACGACTACCAA 59.831 45.455 0.00 0.00 0.00 3.67
3760 4154 2.800544 CACAACCTCAACGACTACCAAG 59.199 50.000 0.00 0.00 0.00 3.61
3761 4155 2.433239 ACAACCTCAACGACTACCAAGT 59.567 45.455 0.00 0.00 39.21 3.16
3762 4156 3.638160 ACAACCTCAACGACTACCAAGTA 59.362 43.478 0.00 0.00 35.56 2.24
3763 4157 4.282703 ACAACCTCAACGACTACCAAGTAT 59.717 41.667 0.00 0.00 35.56 2.12
3764 4158 4.715527 ACCTCAACGACTACCAAGTATC 57.284 45.455 0.00 0.00 35.56 2.24
3765 4159 4.084287 ACCTCAACGACTACCAAGTATCA 58.916 43.478 0.00 0.00 35.56 2.15
3766 4160 4.525487 ACCTCAACGACTACCAAGTATCAA 59.475 41.667 0.00 0.00 35.56 2.57
3767 4161 4.863131 CCTCAACGACTACCAAGTATCAAC 59.137 45.833 0.00 0.00 35.56 3.18
3768 4162 5.456548 TCAACGACTACCAAGTATCAACA 57.543 39.130 0.00 0.00 35.56 3.33
3769 4163 5.845103 TCAACGACTACCAAGTATCAACAA 58.155 37.500 0.00 0.00 35.56 2.83
3770 4164 6.282167 TCAACGACTACCAAGTATCAACAAA 58.718 36.000 0.00 0.00 35.56 2.83
3771 4165 6.762187 TCAACGACTACCAAGTATCAACAAAA 59.238 34.615 0.00 0.00 35.56 2.44
3772 4166 7.442969 TCAACGACTACCAAGTATCAACAAAAT 59.557 33.333 0.00 0.00 35.56 1.82
3773 4167 7.129109 ACGACTACCAAGTATCAACAAAATG 57.871 36.000 0.00 0.00 35.56 2.32
3774 4168 6.932400 ACGACTACCAAGTATCAACAAAATGA 59.068 34.615 0.00 0.00 35.56 2.57
3775 4169 7.117812 ACGACTACCAAGTATCAACAAAATGAG 59.882 37.037 0.00 0.00 35.56 2.90
3776 4170 7.145932 ACTACCAAGTATCAACAAAATGAGC 57.854 36.000 0.00 0.00 32.84 4.26
3777 4171 6.714810 ACTACCAAGTATCAACAAAATGAGCA 59.285 34.615 0.00 0.00 32.84 4.26
3778 4172 6.403866 ACCAAGTATCAACAAAATGAGCAA 57.596 33.333 0.00 0.00 31.76 3.91
3779 4173 6.815089 ACCAAGTATCAACAAAATGAGCAAA 58.185 32.000 0.00 0.00 31.76 3.68
3780 4174 7.271511 ACCAAGTATCAACAAAATGAGCAAAA 58.728 30.769 0.00 0.00 31.76 2.44
3781 4175 7.439056 ACCAAGTATCAACAAAATGAGCAAAAG 59.561 33.333 0.00 0.00 31.76 2.27
3782 4176 7.652909 CCAAGTATCAACAAAATGAGCAAAAGA 59.347 33.333 0.00 0.00 31.76 2.52
3783 4177 9.033481 CAAGTATCAACAAAATGAGCAAAAGAA 57.967 29.630 0.00 0.00 31.76 2.52
3784 4178 8.579682 AGTATCAACAAAATGAGCAAAAGAAC 57.420 30.769 0.00 0.00 31.76 3.01
3785 4179 6.849588 ATCAACAAAATGAGCAAAAGAACC 57.150 33.333 0.00 0.00 31.76 3.62
3786 4180 4.803088 TCAACAAAATGAGCAAAAGAACCG 59.197 37.500 0.00 0.00 0.00 4.44
3787 4181 3.123050 ACAAAATGAGCAAAAGAACCGC 58.877 40.909 0.00 0.00 0.00 5.68
3788 4182 3.181476 ACAAAATGAGCAAAAGAACCGCT 60.181 39.130 0.00 0.00 39.12 5.52
3789 4183 3.733443 AAATGAGCAAAAGAACCGCTT 57.267 38.095 0.00 0.00 38.88 4.68
3790 4184 2.712057 ATGAGCAAAAGAACCGCTTG 57.288 45.000 0.00 0.00 36.80 4.01
3791 4185 1.388547 TGAGCAAAAGAACCGCTTGT 58.611 45.000 0.00 0.00 36.80 3.16
3792 4186 2.566913 TGAGCAAAAGAACCGCTTGTA 58.433 42.857 0.00 0.00 36.80 2.41
3793 4187 2.548057 TGAGCAAAAGAACCGCTTGTAG 59.452 45.455 0.00 0.00 36.80 2.74
3794 4188 1.266989 AGCAAAAGAACCGCTTGTAGC 59.733 47.619 0.00 0.00 36.80 3.58
3795 4189 1.666023 GCAAAAGAACCGCTTGTAGCC 60.666 52.381 0.00 0.00 38.18 3.93
3796 4190 0.872388 AAAAGAACCGCTTGTAGCCG 59.128 50.000 0.00 0.00 38.18 5.52
3797 4191 0.034337 AAAGAACCGCTTGTAGCCGA 59.966 50.000 0.00 0.00 38.18 5.54
3798 4192 0.669625 AAGAACCGCTTGTAGCCGAC 60.670 55.000 0.00 0.00 38.18 4.79
3799 4193 2.431942 AACCGCTTGTAGCCGACG 60.432 61.111 0.00 0.00 38.18 5.12
3801 4195 4.124351 CCGCTTGTAGCCGACGGA 62.124 66.667 20.50 0.00 46.71 4.69
3802 4196 2.579787 CGCTTGTAGCCGACGGAG 60.580 66.667 20.50 6.62 38.18 4.63
3803 4197 2.882876 GCTTGTAGCCGACGGAGA 59.117 61.111 20.50 0.00 34.48 3.71
3804 4198 1.516603 GCTTGTAGCCGACGGAGAC 60.517 63.158 20.50 14.67 34.48 3.36
3805 4199 1.139095 CTTGTAGCCGACGGAGACC 59.861 63.158 20.50 0.00 0.00 3.85
3806 4200 1.592400 CTTGTAGCCGACGGAGACCA 61.592 60.000 20.50 4.92 0.00 4.02
3807 4201 1.870055 TTGTAGCCGACGGAGACCAC 61.870 60.000 20.50 7.40 0.00 4.16
3808 4202 2.753043 TAGCCGACGGAGACCACC 60.753 66.667 20.50 0.00 0.00 4.61
3809 4203 3.572447 TAGCCGACGGAGACCACCA 62.572 63.158 20.50 0.00 0.00 4.17
3810 4204 2.849096 TAGCCGACGGAGACCACCAT 62.849 60.000 20.50 0.00 0.00 3.55
3811 4205 2.494918 CCGACGGAGACCACCATC 59.505 66.667 8.64 0.00 0.00 3.51
3812 4206 2.348104 CCGACGGAGACCACCATCA 61.348 63.158 8.64 0.00 0.00 3.07
3813 4207 1.589630 CGACGGAGACCACCATCAA 59.410 57.895 0.00 0.00 0.00 2.57
3814 4208 0.458543 CGACGGAGACCACCATCAAG 60.459 60.000 0.00 0.00 0.00 3.02
3815 4209 0.895530 GACGGAGACCACCATCAAGA 59.104 55.000 0.00 0.00 0.00 3.02
3816 4210 1.482593 GACGGAGACCACCATCAAGAT 59.517 52.381 0.00 0.00 0.00 2.40
3817 4211 1.208052 ACGGAGACCACCATCAAGATG 59.792 52.381 3.07 3.07 38.51 2.90
3818 4212 1.482182 CGGAGACCACCATCAAGATGA 59.518 52.381 11.48 0.00 41.20 2.92
3819 4213 2.482664 CGGAGACCACCATCAAGATGAG 60.483 54.545 11.48 4.65 41.20 2.90
3820 4214 2.768527 GGAGACCACCATCAAGATGAGA 59.231 50.000 11.48 0.00 41.20 3.27
3821 4215 3.181467 GGAGACCACCATCAAGATGAGAG 60.181 52.174 11.48 2.39 41.20 3.20
3822 4216 3.703556 GAGACCACCATCAAGATGAGAGA 59.296 47.826 11.48 0.00 41.20 3.10
3823 4217 4.296912 AGACCACCATCAAGATGAGAGAT 58.703 43.478 11.48 0.00 41.20 2.75
3824 4218 4.344679 AGACCACCATCAAGATGAGAGATC 59.655 45.833 11.48 3.24 41.20 2.75
3825 4219 4.035814 ACCACCATCAAGATGAGAGATCA 58.964 43.478 11.48 0.00 41.20 2.92
3826 4220 4.659368 ACCACCATCAAGATGAGAGATCAT 59.341 41.667 11.48 0.00 41.20 2.45
3827 4221 5.221682 ACCACCATCAAGATGAGAGATCATC 60.222 44.000 11.48 9.68 44.97 2.92
3828 4222 5.239351 CACCATCAAGATGAGAGATCATCC 58.761 45.833 11.48 0.00 45.56 3.51
3829 4223 4.021280 ACCATCAAGATGAGAGATCATCCG 60.021 45.833 11.48 6.74 45.56 4.18
3830 4224 4.496360 CATCAAGATGAGAGATCATCCGG 58.504 47.826 13.24 0.00 45.56 5.14
3831 4225 2.896044 TCAAGATGAGAGATCATCCGGG 59.104 50.000 13.24 5.25 45.56 5.73
3832 4226 2.896044 CAAGATGAGAGATCATCCGGGA 59.104 50.000 13.24 0.00 45.56 5.14
3833 4227 3.251016 AGATGAGAGATCATCCGGGAA 57.749 47.619 13.24 0.00 45.56 3.97
3834 4228 3.164268 AGATGAGAGATCATCCGGGAAG 58.836 50.000 13.24 0.00 45.56 3.46
3835 4229 2.755952 TGAGAGATCATCCGGGAAGA 57.244 50.000 4.19 4.19 0.00 2.87
3836 4230 3.032265 TGAGAGATCATCCGGGAAGAA 57.968 47.619 6.00 0.00 0.00 2.52
3837 4231 2.961741 TGAGAGATCATCCGGGAAGAAG 59.038 50.000 6.00 0.00 0.00 2.85
3838 4232 2.962421 GAGAGATCATCCGGGAAGAAGT 59.038 50.000 6.00 0.00 0.00 3.01
3839 4233 2.697751 AGAGATCATCCGGGAAGAAGTG 59.302 50.000 6.00 0.00 0.00 3.16
3840 4234 1.139853 AGATCATCCGGGAAGAAGTGC 59.860 52.381 6.00 0.00 0.00 4.40
3841 4235 0.911769 ATCATCCGGGAAGAAGTGCA 59.088 50.000 6.00 0.00 0.00 4.57
3842 4236 0.690192 TCATCCGGGAAGAAGTGCAA 59.310 50.000 0.00 0.00 0.00 4.08
3843 4237 0.804989 CATCCGGGAAGAAGTGCAAC 59.195 55.000 0.00 0.00 0.00 4.17
3844 4238 0.673644 ATCCGGGAAGAAGTGCAACG 60.674 55.000 0.00 0.00 45.86 4.10
3845 4239 2.325082 CCGGGAAGAAGTGCAACGG 61.325 63.158 0.00 0.00 45.86 4.44
3846 4240 1.301401 CGGGAAGAAGTGCAACGGA 60.301 57.895 0.00 0.00 45.86 4.69
3847 4241 1.566018 CGGGAAGAAGTGCAACGGAC 61.566 60.000 0.00 0.00 45.86 4.79
3848 4242 0.534203 GGGAAGAAGTGCAACGGACA 60.534 55.000 0.00 0.00 45.86 4.02
3849 4243 1.305201 GGAAGAAGTGCAACGGACAA 58.695 50.000 0.00 0.00 45.86 3.18
3850 4244 1.002792 GGAAGAAGTGCAACGGACAAC 60.003 52.381 0.00 0.00 45.86 3.32
3870 4264 4.148825 CGGACCGAGGGCTCCAAG 62.149 72.222 8.64 0.00 0.00 3.61
3871 4265 2.683933 GGACCGAGGGCTCCAAGA 60.684 66.667 0.00 0.00 0.00 3.02
3872 4266 2.579738 GACCGAGGGCTCCAAGAC 59.420 66.667 0.00 0.00 0.00 3.01
3873 4267 3.358076 GACCGAGGGCTCCAAGACG 62.358 68.421 0.00 0.00 0.00 4.18
3874 4268 3.068691 CCGAGGGCTCCAAGACGA 61.069 66.667 0.00 0.00 0.00 4.20
3875 4269 2.427245 CCGAGGGCTCCAAGACGAT 61.427 63.158 0.00 0.00 0.00 3.73
3876 4270 1.227089 CGAGGGCTCCAAGACGATG 60.227 63.158 0.00 0.00 0.00 3.84
3877 4271 1.522580 GAGGGCTCCAAGACGATGC 60.523 63.158 0.00 0.00 0.00 3.91
3878 4272 2.514824 GGGCTCCAAGACGATGCC 60.515 66.667 0.00 0.00 42.56 4.40
3879 4273 2.586792 GGCTCCAAGACGATGCCT 59.413 61.111 0.00 0.00 40.36 4.75
3880 4274 1.522580 GGCTCCAAGACGATGCCTC 60.523 63.158 0.00 0.00 40.36 4.70
3881 4275 1.522580 GCTCCAAGACGATGCCTCC 60.523 63.158 0.00 0.00 0.00 4.30
3882 4276 1.900351 CTCCAAGACGATGCCTCCA 59.100 57.895 0.00 0.00 0.00 3.86
3883 4277 0.250234 CTCCAAGACGATGCCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
3884 4278 0.250234 TCCAAGACGATGCCTCCAAG 59.750 55.000 0.00 0.00 0.00 3.61
3885 4279 0.250234 CCAAGACGATGCCTCCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
3886 4280 1.339055 CCAAGACGATGCCTCCAAGAA 60.339 52.381 0.00 0.00 0.00 2.52
3887 4281 2.005451 CAAGACGATGCCTCCAAGAAG 58.995 52.381 0.00 0.00 0.00 2.85
3888 4282 0.539051 AGACGATGCCTCCAAGAAGG 59.461 55.000 0.00 0.00 39.62 3.46
3889 4283 0.462759 GACGATGCCTCCAAGAAGGG 60.463 60.000 0.00 0.00 36.88 3.95
3890 4284 1.821332 CGATGCCTCCAAGAAGGGC 60.821 63.158 0.00 0.00 45.45 5.19
3893 4287 2.747855 GCCTCCAAGAAGGGCACG 60.748 66.667 0.00 0.00 44.69 5.34
3894 4288 3.068881 CCTCCAAGAAGGGCACGA 58.931 61.111 0.00 0.00 38.24 4.35
3895 4289 1.376037 CCTCCAAGAAGGGCACGAC 60.376 63.158 0.00 0.00 38.24 4.34
3896 4290 1.376037 CTCCAAGAAGGGCACGACC 60.376 63.158 0.00 0.00 38.24 4.79
3897 4291 2.111999 CTCCAAGAAGGGCACGACCA 62.112 60.000 0.00 0.00 42.05 4.02
3898 4292 1.966451 CCAAGAAGGGCACGACCAC 60.966 63.158 0.00 0.00 42.05 4.16
3899 4293 1.227823 CAAGAAGGGCACGACCACA 60.228 57.895 0.00 0.00 42.05 4.17
3900 4294 1.071471 AAGAAGGGCACGACCACAG 59.929 57.895 0.00 0.00 42.05 3.66
3901 4295 1.407656 AAGAAGGGCACGACCACAGA 61.408 55.000 0.00 0.00 42.05 3.41
3902 4296 1.668151 GAAGGGCACGACCACAGAC 60.668 63.158 0.00 0.00 42.05 3.51
3903 4297 3.178540 AAGGGCACGACCACAGACC 62.179 63.158 0.00 0.00 42.05 3.85
3905 4299 4.295119 GGCACGACCACAGACCGT 62.295 66.667 0.00 0.00 38.86 4.83
3906 4300 2.733593 GCACGACCACAGACCGTC 60.734 66.667 0.00 0.00 33.96 4.79
3910 4304 3.986006 GACCACAGACCGTCGCCA 61.986 66.667 0.00 0.00 0.00 5.69
3911 4305 3.296709 GACCACAGACCGTCGCCAT 62.297 63.158 0.00 0.00 0.00 4.40
3912 4306 2.509336 CCACAGACCGTCGCCATC 60.509 66.667 0.00 0.00 0.00 3.51
3913 4307 2.880879 CACAGACCGTCGCCATCG 60.881 66.667 0.00 0.00 0.00 3.84
3914 4308 3.371063 ACAGACCGTCGCCATCGT 61.371 61.111 0.00 0.00 36.96 3.73
3915 4309 2.579787 CAGACCGTCGCCATCGTC 60.580 66.667 0.00 0.00 36.96 4.20
3916 4310 3.823330 AGACCGTCGCCATCGTCC 61.823 66.667 0.00 0.00 36.96 4.79
3921 4315 4.867599 GTCGCCATCGTCCGACCC 62.868 72.222 2.07 0.00 45.81 4.46
3923 4317 4.444838 CGCCATCGTCCGACCCAA 62.445 66.667 0.00 0.00 0.00 4.12
3924 4318 2.046700 GCCATCGTCCGACCCAAA 60.047 61.111 0.00 0.00 0.00 3.28
3925 4319 2.106683 GCCATCGTCCGACCCAAAG 61.107 63.158 0.00 0.00 0.00 2.77
3926 4320 1.594833 CCATCGTCCGACCCAAAGA 59.405 57.895 0.00 0.00 0.00 2.52
3927 4321 0.178068 CCATCGTCCGACCCAAAGAT 59.822 55.000 0.00 0.00 0.00 2.40
3928 4322 1.571919 CATCGTCCGACCCAAAGATC 58.428 55.000 0.00 0.00 0.00 2.75
3929 4323 1.134818 CATCGTCCGACCCAAAGATCA 60.135 52.381 0.00 0.00 0.00 2.92
3930 4324 0.530744 TCGTCCGACCCAAAGATCAG 59.469 55.000 0.00 0.00 0.00 2.90
3931 4325 0.460284 CGTCCGACCCAAAGATCAGG 60.460 60.000 0.00 0.00 0.00 3.86
3932 4326 0.613777 GTCCGACCCAAAGATCAGGT 59.386 55.000 0.00 0.00 36.31 4.00
3933 4327 1.003233 GTCCGACCCAAAGATCAGGTT 59.997 52.381 0.00 0.00 32.81 3.50
3934 4328 1.702957 TCCGACCCAAAGATCAGGTTT 59.297 47.619 0.00 0.00 32.81 3.27
3935 4329 2.107552 TCCGACCCAAAGATCAGGTTTT 59.892 45.455 0.00 0.00 32.81 2.43
3936 4330 2.488153 CCGACCCAAAGATCAGGTTTTC 59.512 50.000 0.00 0.00 32.81 2.29
3937 4331 3.146066 CGACCCAAAGATCAGGTTTTCA 58.854 45.455 0.00 0.00 32.81 2.69
3938 4332 3.058224 CGACCCAAAGATCAGGTTTTCAC 60.058 47.826 0.00 0.00 32.81 3.18
3939 4333 3.230976 ACCCAAAGATCAGGTTTTCACC 58.769 45.455 0.00 0.00 44.67 4.02
3940 4334 2.562738 CCCAAAGATCAGGTTTTCACCC 59.437 50.000 0.00 0.00 45.63 4.61
3941 4335 2.228822 CCAAAGATCAGGTTTTCACCCG 59.771 50.000 0.00 0.00 45.63 5.28
3942 4336 2.200373 AAGATCAGGTTTTCACCCGG 57.800 50.000 0.00 0.00 45.63 5.73
3943 4337 1.358152 AGATCAGGTTTTCACCCGGA 58.642 50.000 0.73 0.00 45.63 5.14
3944 4338 1.702957 AGATCAGGTTTTCACCCGGAA 59.297 47.619 0.73 0.00 45.63 4.30
3945 4339 1.810755 GATCAGGTTTTCACCCGGAAC 59.189 52.381 0.73 0.00 45.63 3.62
3946 4340 0.547075 TCAGGTTTTCACCCGGAACA 59.453 50.000 0.73 0.00 45.63 3.18
3947 4341 1.064611 TCAGGTTTTCACCCGGAACAA 60.065 47.619 0.73 0.00 45.63 2.83
3948 4342 1.336755 CAGGTTTTCACCCGGAACAAG 59.663 52.381 0.73 0.00 45.63 3.16
3949 4343 1.213430 AGGTTTTCACCCGGAACAAGA 59.787 47.619 0.73 0.00 45.63 3.02
3950 4344 1.335810 GGTTTTCACCCGGAACAAGAC 59.664 52.381 0.73 0.00 37.03 3.01
3951 4345 1.003223 GTTTTCACCCGGAACAAGACG 60.003 52.381 0.73 0.00 34.56 4.18
3956 4350 2.264794 CCGGAACAAGACGGGAGG 59.735 66.667 0.00 0.00 46.08 4.30
3957 4351 2.280552 CCGGAACAAGACGGGAGGA 61.281 63.158 0.00 0.00 46.08 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.174599 ACTCACTCAAATCTTCTCAAAATCCTG 59.825 37.037 0.00 0.00 0.00 3.86
13 14 9.950496 ATGTTCTGTATTAACTCACTCAAATCT 57.050 29.630 0.00 0.00 0.00 2.40
14 15 9.979270 CATGTTCTGTATTAACTCACTCAAATC 57.021 33.333 0.00 0.00 0.00 2.17
31 32 7.490657 TGTCCTACTATAAACCATGTTCTGT 57.509 36.000 0.00 0.00 0.00 3.41
34 35 7.562135 TCCTTGTCCTACTATAAACCATGTTC 58.438 38.462 0.00 0.00 0.00 3.18
37 38 8.980481 ATTTCCTTGTCCTACTATAAACCATG 57.020 34.615 0.00 0.00 0.00 3.66
71 72 7.696453 CGTCGCTCTGGTTTGAAATAAAAATAT 59.304 33.333 0.00 0.00 0.00 1.28
72 73 7.018826 CGTCGCTCTGGTTTGAAATAAAAATA 58.981 34.615 0.00 0.00 0.00 1.40
82 83 1.300620 CCACGTCGCTCTGGTTTGA 60.301 57.895 0.00 0.00 0.00 2.69
116 117 1.904537 CCCCGTGGTTTCTACCTTAGT 59.095 52.381 0.00 0.00 45.27 2.24
117 118 1.208776 CCCCCGTGGTTTCTACCTTAG 59.791 57.143 0.00 0.00 45.27 2.18
118 119 1.203288 TCCCCCGTGGTTTCTACCTTA 60.203 52.381 0.00 0.00 45.27 2.69
119 120 0.474273 TCCCCCGTGGTTTCTACCTT 60.474 55.000 0.00 0.00 45.27 3.50
120 121 0.908180 CTCCCCCGTGGTTTCTACCT 60.908 60.000 0.00 0.00 45.27 3.08
121 122 1.600638 CTCCCCCGTGGTTTCTACC 59.399 63.158 0.00 0.00 45.26 3.18
122 123 0.906282 TCCTCCCCCGTGGTTTCTAC 60.906 60.000 0.00 0.00 34.77 2.59
123 124 0.616679 CTCCTCCCCCGTGGTTTCTA 60.617 60.000 0.00 0.00 34.77 2.10
127 128 4.265507 ACCTCCTCCCCCGTGGTT 62.266 66.667 0.00 0.00 34.77 3.67
129 130 4.715130 TCACCTCCTCCCCCGTGG 62.715 72.222 0.00 0.00 0.00 4.94
131 132 4.400251 CCTCACCTCCTCCCCCGT 62.400 72.222 0.00 0.00 0.00 5.28
132 133 4.075793 TCCTCACCTCCTCCCCCG 62.076 72.222 0.00 0.00 0.00 5.73
133 134 2.365768 GTCCTCACCTCCTCCCCC 60.366 72.222 0.00 0.00 0.00 5.40
246 569 8.641541 ACATTTTTCTCCACACATAATGACTTT 58.358 29.630 0.00 0.00 0.00 2.66
247 570 8.181904 ACATTTTTCTCCACACATAATGACTT 57.818 30.769 0.00 0.00 0.00 3.01
248 571 7.765695 ACATTTTTCTCCACACATAATGACT 57.234 32.000 0.00 0.00 0.00 3.41
251 574 8.810427 GCATAACATTTTTCTCCACACATAATG 58.190 33.333 0.00 0.00 0.00 1.90
252 575 7.981225 GGCATAACATTTTTCTCCACACATAAT 59.019 33.333 0.00 0.00 0.00 1.28
254 577 6.404184 CGGCATAACATTTTTCTCCACACATA 60.404 38.462 0.00 0.00 0.00 2.29
262 590 5.545658 TCTGACGGCATAACATTTTTCTC 57.454 39.130 0.00 0.00 0.00 2.87
305 633 0.179250 CGCACGGTCATTTTCAGACG 60.179 55.000 0.00 0.00 36.87 4.18
459 788 0.895100 TTGCCAGCCAACCATGAGAC 60.895 55.000 0.00 0.00 0.00 3.36
473 802 2.070039 CGTATCCCCTCCCTTGCCA 61.070 63.158 0.00 0.00 0.00 4.92
474 803 1.632965 AACGTATCCCCTCCCTTGCC 61.633 60.000 0.00 0.00 0.00 4.52
476 805 1.134491 GTCAACGTATCCCCTCCCTTG 60.134 57.143 0.00 0.00 0.00 3.61
477 806 1.201424 GTCAACGTATCCCCTCCCTT 58.799 55.000 0.00 0.00 0.00 3.95
500 829 0.999406 CGTTGGAATGCAGGTACTCG 59.001 55.000 0.00 0.00 34.60 4.18
514 843 4.974468 GCGTATGCATGTCGTTGG 57.026 55.556 20.89 1.96 42.15 3.77
525 854 1.070108 GCAGAGATGTGCATGCGTATG 60.070 52.381 14.09 9.36 43.41 2.39
541 870 3.891586 GACACGTCGCTTCGGCAGA 62.892 63.158 0.00 0.00 41.88 4.26
766 1106 7.609918 AGGGATTAGAAAAAGAGAAGAAGAAGC 59.390 37.037 0.00 0.00 0.00 3.86
797 1140 0.251354 AGCTCACCGAAGATGCACAT 59.749 50.000 0.00 0.00 0.00 3.21
801 1144 1.442769 TCAAAGCTCACCGAAGATGC 58.557 50.000 0.00 0.00 0.00 3.91
802 1145 3.005554 ACATCAAAGCTCACCGAAGATG 58.994 45.455 0.00 0.00 0.00 2.90
807 1150 2.028203 TGATGACATCAAAGCTCACCGA 60.028 45.455 15.83 0.00 36.11 4.69
816 1159 3.076621 GCTGACCAGTGATGACATCAAA 58.923 45.455 19.57 0.00 41.69 2.69
843 1186 1.337821 CCGAGCGAGGCGATTTATAC 58.662 55.000 0.00 0.00 0.00 1.47
869 1212 5.627499 TGCTTTGTATAGGCAACAAGAAG 57.373 39.130 0.00 0.00 38.05 2.85
901 1244 5.057149 ACTTTGTAGACGCAACAAGAAGAT 58.943 37.500 4.68 0.00 38.05 2.40
981 1332 0.396278 TGCTCTCTGCCTAGCTAGCA 60.396 55.000 18.83 14.99 42.00 3.49
1026 1381 4.640690 ACAGGGACAGGGACGGCT 62.641 66.667 0.00 0.00 0.00 5.52
1135 1490 5.180492 TGTTAATTCGTACAGCAAAGGGAAG 59.820 40.000 0.00 0.00 0.00 3.46
1151 1511 5.291858 TGTCATCTCATGAGCGTGTTAATTC 59.708 40.000 18.36 7.86 40.53 2.17
1183 1543 1.489481 TCGCTGAGATTCCAGTCCAT 58.511 50.000 0.00 0.00 36.57 3.41
1270 1630 2.954868 GCCGGCGTCATGTCGTAG 60.955 66.667 12.58 7.95 46.52 3.51
1613 1977 1.557443 GCAGGAACGACGTGAACAGG 61.557 60.000 0.00 0.00 36.62 4.00
1703 2067 3.067106 CACGTTCTTGGTGCTATTGTCT 58.933 45.455 0.00 0.00 0.00 3.41
1709 2073 1.272490 CTCCTCACGTTCTTGGTGCTA 59.728 52.381 0.00 0.00 35.39 3.49
1862 2226 1.143620 GAAGAGCATGAGAGCGGCT 59.856 57.895 0.00 0.00 41.35 5.52
2542 2906 4.241999 GCATCGCCGACATGTGCC 62.242 66.667 1.15 0.00 0.00 5.01
2612 2976 2.145397 AGTAGAACTCGATCTGCCCA 57.855 50.000 0.00 0.00 33.07 5.36
2650 3014 2.903855 CCCCGATGCTGGACATGC 60.904 66.667 0.00 0.00 39.84 4.06
2999 3363 2.170985 CGCAAGGTCAAACGAGCG 59.829 61.111 0.00 0.00 39.17 5.03
3038 3402 9.093970 CAATATCACAATTCACAATTCAGCAAT 57.906 29.630 0.00 0.00 0.00 3.56
3040 3404 7.828712 TCAATATCACAATTCACAATTCAGCA 58.171 30.769 0.00 0.00 0.00 4.41
3041 3405 8.752254 CATCAATATCACAATTCACAATTCAGC 58.248 33.333 0.00 0.00 0.00 4.26
3042 3406 9.797556 ACATCAATATCACAATTCACAATTCAG 57.202 29.630 0.00 0.00 0.00 3.02
3043 3407 9.575783 CACATCAATATCACAATTCACAATTCA 57.424 29.630 0.00 0.00 0.00 2.57
3044 3408 8.537223 GCACATCAATATCACAATTCACAATTC 58.463 33.333 0.00 0.00 0.00 2.17
3045 3409 8.255206 AGCACATCAATATCACAATTCACAATT 58.745 29.630 0.00 0.00 0.00 2.32
3046 3410 7.778083 AGCACATCAATATCACAATTCACAAT 58.222 30.769 0.00 0.00 0.00 2.71
3047 3411 7.160547 AGCACATCAATATCACAATTCACAA 57.839 32.000 0.00 0.00 0.00 3.33
3048 3412 6.762702 AGCACATCAATATCACAATTCACA 57.237 33.333 0.00 0.00 0.00 3.58
3049 3413 6.847792 CGTAGCACATCAATATCACAATTCAC 59.152 38.462 0.00 0.00 0.00 3.18
3195 3568 8.352137 TGCCATCATCATAAGTTATTTATGGG 57.648 34.615 16.71 11.53 45.72 4.00
3299 3687 5.402630 TGTCATGGCCTACTGGAAGATATA 58.597 41.667 3.32 0.00 37.43 0.86
3318 3706 1.885388 CACCGCCGTGACTTTGTCA 60.885 57.895 0.00 0.00 43.14 3.58
3392 3780 2.097036 TCCTCGAAACTCTCCGCATTA 58.903 47.619 0.00 0.00 0.00 1.90
3404 3792 1.272490 ACTTCGACTGCATCCTCGAAA 59.728 47.619 18.87 8.35 45.60 3.46
3405 3793 0.888619 ACTTCGACTGCATCCTCGAA 59.111 50.000 17.88 17.88 44.50 3.71
3415 3803 4.437659 GCTACTGTTCCTCTACTTCGACTG 60.438 50.000 0.00 0.00 0.00 3.51
3420 3808 3.487879 GCTCGCTACTGTTCCTCTACTTC 60.488 52.174 0.00 0.00 0.00 3.01
3480 3868 2.225255 GCTGTTCTTGCTTGGTCTCTTC 59.775 50.000 0.00 0.00 0.00 2.87
3533 3926 1.571460 GAGGTCAAAGCACAGCACG 59.429 57.895 0.00 0.00 0.00 5.34
3537 3930 4.047834 TGCGAGGTCAAAGCACAG 57.952 55.556 0.00 0.00 35.81 3.66
3630 4024 7.668469 CTTTATATATAAAGCGGGGGAAACCTT 59.332 37.037 25.10 0.00 45.01 3.50
3631 4025 7.173032 CTTTATATATAAAGCGGGGGAAACCT 58.827 38.462 25.10 0.00 45.01 3.50
3632 4026 7.387119 CTTTATATATAAAGCGGGGGAAACC 57.613 40.000 25.10 0.00 44.97 3.27
3647 4041 9.284968 GGATGTAAGTGTTGGTGCTTTATATAT 57.715 33.333 0.00 0.00 0.00 0.86
3648 4042 8.268605 TGGATGTAAGTGTTGGTGCTTTATATA 58.731 33.333 0.00 0.00 0.00 0.86
3649 4043 7.116075 TGGATGTAAGTGTTGGTGCTTTATAT 58.884 34.615 0.00 0.00 0.00 0.86
3650 4044 6.477253 TGGATGTAAGTGTTGGTGCTTTATA 58.523 36.000 0.00 0.00 0.00 0.98
3651 4045 5.321102 TGGATGTAAGTGTTGGTGCTTTAT 58.679 37.500 0.00 0.00 0.00 1.40
3652 4046 4.720046 TGGATGTAAGTGTTGGTGCTTTA 58.280 39.130 0.00 0.00 0.00 1.85
3653 4047 3.561143 TGGATGTAAGTGTTGGTGCTTT 58.439 40.909 0.00 0.00 0.00 3.51
3654 4048 3.222173 TGGATGTAAGTGTTGGTGCTT 57.778 42.857 0.00 0.00 0.00 3.91
3655 4049 2.949177 TGGATGTAAGTGTTGGTGCT 57.051 45.000 0.00 0.00 0.00 4.40
3656 4050 2.351738 GCTTGGATGTAAGTGTTGGTGC 60.352 50.000 0.00 0.00 0.00 5.01
3657 4051 2.884012 TGCTTGGATGTAAGTGTTGGTG 59.116 45.455 0.00 0.00 0.00 4.17
3658 4052 3.222173 TGCTTGGATGTAAGTGTTGGT 57.778 42.857 0.00 0.00 0.00 3.67
3659 4053 3.305335 GGTTGCTTGGATGTAAGTGTTGG 60.305 47.826 0.00 0.00 0.00 3.77
3660 4054 3.609175 CGGTTGCTTGGATGTAAGTGTTG 60.609 47.826 0.00 0.00 0.00 3.33
3661 4055 2.552315 CGGTTGCTTGGATGTAAGTGTT 59.448 45.455 0.00 0.00 0.00 3.32
3662 4056 2.151202 CGGTTGCTTGGATGTAAGTGT 58.849 47.619 0.00 0.00 0.00 3.55
3663 4057 2.422597 TCGGTTGCTTGGATGTAAGTG 58.577 47.619 0.00 0.00 0.00 3.16
3664 4058 2.851263 TCGGTTGCTTGGATGTAAGT 57.149 45.000 0.00 0.00 0.00 2.24
3665 4059 4.188462 TGTATCGGTTGCTTGGATGTAAG 58.812 43.478 0.00 0.00 0.00 2.34
3666 4060 4.209307 TGTATCGGTTGCTTGGATGTAA 57.791 40.909 0.00 0.00 0.00 2.41
3667 4061 3.897141 TGTATCGGTTGCTTGGATGTA 57.103 42.857 0.00 0.00 0.00 2.29
3668 4062 2.779755 TGTATCGGTTGCTTGGATGT 57.220 45.000 0.00 0.00 0.00 3.06
3669 4063 3.727673 CGTTTGTATCGGTTGCTTGGATG 60.728 47.826 0.00 0.00 0.00 3.51
3670 4064 2.418628 CGTTTGTATCGGTTGCTTGGAT 59.581 45.455 0.00 0.00 0.00 3.41
3671 4065 1.801771 CGTTTGTATCGGTTGCTTGGA 59.198 47.619 0.00 0.00 0.00 3.53
3672 4066 1.727857 GCGTTTGTATCGGTTGCTTGG 60.728 52.381 0.00 0.00 0.00 3.61
3673 4067 1.069568 TGCGTTTGTATCGGTTGCTTG 60.070 47.619 0.00 0.00 0.00 4.01
3674 4068 1.069500 GTGCGTTTGTATCGGTTGCTT 60.069 47.619 0.00 0.00 0.00 3.91
3675 4069 0.515564 GTGCGTTTGTATCGGTTGCT 59.484 50.000 0.00 0.00 0.00 3.91
3676 4070 0.787908 CGTGCGTTTGTATCGGTTGC 60.788 55.000 0.00 0.00 0.00 4.17
3677 4071 0.787908 GCGTGCGTTTGTATCGGTTG 60.788 55.000 0.00 0.00 0.00 3.77
3678 4072 1.494189 GCGTGCGTTTGTATCGGTT 59.506 52.632 0.00 0.00 0.00 4.44
3679 4073 2.385091 GGCGTGCGTTTGTATCGGT 61.385 57.895 0.00 0.00 0.00 4.69
3680 4074 2.384309 TGGCGTGCGTTTGTATCGG 61.384 57.895 0.00 0.00 0.00 4.18
3681 4075 1.225637 GTGGCGTGCGTTTGTATCG 60.226 57.895 0.00 0.00 0.00 2.92
3682 4076 0.452122 GTGTGGCGTGCGTTTGTATC 60.452 55.000 0.00 0.00 0.00 2.24
3683 4077 1.160946 TGTGTGGCGTGCGTTTGTAT 61.161 50.000 0.00 0.00 0.00 2.29
3684 4078 1.366854 TTGTGTGGCGTGCGTTTGTA 61.367 50.000 0.00 0.00 0.00 2.41
3685 4079 2.691771 TTGTGTGGCGTGCGTTTGT 61.692 52.632 0.00 0.00 0.00 2.83
3686 4080 2.101185 TTGTGTGGCGTGCGTTTG 59.899 55.556 0.00 0.00 0.00 2.93
3687 4081 2.101380 GTTGTGTGGCGTGCGTTT 59.899 55.556 0.00 0.00 0.00 3.60
3688 4082 2.819552 GAGTTGTGTGGCGTGCGTT 61.820 57.895 0.00 0.00 0.00 4.84
3689 4083 3.269347 GAGTTGTGTGGCGTGCGT 61.269 61.111 0.00 0.00 0.00 5.24
3690 4084 2.700334 CTTGAGTTGTGTGGCGTGCG 62.700 60.000 0.00 0.00 0.00 5.34
3691 4085 1.009675 CTTGAGTTGTGTGGCGTGC 60.010 57.895 0.00 0.00 0.00 5.34
3692 4086 1.648720 CCTTGAGTTGTGTGGCGTG 59.351 57.895 0.00 0.00 0.00 5.34
3693 4087 2.186826 GCCTTGAGTTGTGTGGCGT 61.187 57.895 0.00 0.00 33.96 5.68
3694 4088 1.723608 TTGCCTTGAGTTGTGTGGCG 61.724 55.000 0.00 0.00 45.90 5.69
3695 4089 0.031178 CTTGCCTTGAGTTGTGTGGC 59.969 55.000 0.00 0.00 43.49 5.01
3696 4090 1.679139 TCTTGCCTTGAGTTGTGTGG 58.321 50.000 0.00 0.00 0.00 4.17
3697 4091 3.814842 TGTATCTTGCCTTGAGTTGTGTG 59.185 43.478 0.00 0.00 0.00 3.82
3698 4092 4.085357 TGTATCTTGCCTTGAGTTGTGT 57.915 40.909 0.00 0.00 0.00 3.72
3699 4093 4.756642 TCTTGTATCTTGCCTTGAGTTGTG 59.243 41.667 0.00 0.00 0.00 3.33
3700 4094 4.973168 TCTTGTATCTTGCCTTGAGTTGT 58.027 39.130 0.00 0.00 0.00 3.32
3701 4095 5.947228 TTCTTGTATCTTGCCTTGAGTTG 57.053 39.130 0.00 0.00 0.00 3.16
3702 4096 5.105997 GCATTCTTGTATCTTGCCTTGAGTT 60.106 40.000 0.00 0.00 0.00 3.01
3703 4097 4.397417 GCATTCTTGTATCTTGCCTTGAGT 59.603 41.667 0.00 0.00 0.00 3.41
3704 4098 4.918037 GCATTCTTGTATCTTGCCTTGAG 58.082 43.478 0.00 0.00 0.00 3.02
3705 4099 4.970662 GCATTCTTGTATCTTGCCTTGA 57.029 40.909 0.00 0.00 0.00 3.02
3710 4104 1.334869 CCCGGCATTCTTGTATCTTGC 59.665 52.381 0.00 0.00 0.00 4.01
3711 4105 1.334869 GCCCGGCATTCTTGTATCTTG 59.665 52.381 3.91 0.00 0.00 3.02
3712 4106 1.064758 TGCCCGGCATTCTTGTATCTT 60.065 47.619 8.43 0.00 31.71 2.40
3713 4107 0.546122 TGCCCGGCATTCTTGTATCT 59.454 50.000 8.43 0.00 31.71 1.98
3714 4108 0.663153 GTGCCCGGCATTCTTGTATC 59.337 55.000 16.96 0.00 41.91 2.24
3715 4109 0.751643 GGTGCCCGGCATTCTTGTAT 60.752 55.000 16.96 0.00 41.91 2.29
3716 4110 1.377987 GGTGCCCGGCATTCTTGTA 60.378 57.895 16.96 0.00 41.91 2.41
3717 4111 2.676471 GGTGCCCGGCATTCTTGT 60.676 61.111 16.96 0.00 41.91 3.16
3718 4112 3.814268 CGGTGCCCGGCATTCTTG 61.814 66.667 16.96 0.10 44.15 3.02
3728 4122 3.284449 GGTTGTGTGTCGGTGCCC 61.284 66.667 0.00 0.00 0.00 5.36
3729 4123 2.203153 AGGTTGTGTGTCGGTGCC 60.203 61.111 0.00 0.00 0.00 5.01
3730 4124 1.092921 TTGAGGTTGTGTGTCGGTGC 61.093 55.000 0.00 0.00 0.00 5.01
3731 4125 0.655733 GTTGAGGTTGTGTGTCGGTG 59.344 55.000 0.00 0.00 0.00 4.94
3732 4126 0.808453 CGTTGAGGTTGTGTGTCGGT 60.808 55.000 0.00 0.00 0.00 4.69
3733 4127 0.528901 TCGTTGAGGTTGTGTGTCGG 60.529 55.000 0.00 0.00 0.00 4.79
3734 4128 0.575390 GTCGTTGAGGTTGTGTGTCG 59.425 55.000 0.00 0.00 0.00 4.35
3735 4129 1.935933 AGTCGTTGAGGTTGTGTGTC 58.064 50.000 0.00 0.00 0.00 3.67
3736 4130 2.482490 GGTAGTCGTTGAGGTTGTGTGT 60.482 50.000 0.00 0.00 0.00 3.72
3737 4131 2.132762 GGTAGTCGTTGAGGTTGTGTG 58.867 52.381 0.00 0.00 0.00 3.82
3738 4132 1.758280 TGGTAGTCGTTGAGGTTGTGT 59.242 47.619 0.00 0.00 0.00 3.72
3739 4133 2.519377 TGGTAGTCGTTGAGGTTGTG 57.481 50.000 0.00 0.00 0.00 3.33
3740 4134 2.433239 ACTTGGTAGTCGTTGAGGTTGT 59.567 45.455 0.00 0.00 0.00 3.32
3741 4135 3.107642 ACTTGGTAGTCGTTGAGGTTG 57.892 47.619 0.00 0.00 0.00 3.77
3742 4136 4.525487 TGATACTTGGTAGTCGTTGAGGTT 59.475 41.667 0.00 0.00 35.78 3.50
3743 4137 4.084287 TGATACTTGGTAGTCGTTGAGGT 58.916 43.478 0.00 0.00 35.78 3.85
3744 4138 4.713824 TGATACTTGGTAGTCGTTGAGG 57.286 45.455 0.00 0.00 35.78 3.86
3745 4139 5.466819 TGTTGATACTTGGTAGTCGTTGAG 58.533 41.667 0.00 0.00 35.78 3.02
3746 4140 5.456548 TGTTGATACTTGGTAGTCGTTGA 57.543 39.130 0.00 0.00 35.78 3.18
3747 4141 6.533819 TTTGTTGATACTTGGTAGTCGTTG 57.466 37.500 0.00 0.00 35.78 4.10
3748 4142 7.442969 TCATTTTGTTGATACTTGGTAGTCGTT 59.557 33.333 0.00 0.00 35.78 3.85
3749 4143 6.932400 TCATTTTGTTGATACTTGGTAGTCGT 59.068 34.615 0.00 0.00 35.78 4.34
3750 4144 7.359262 TCATTTTGTTGATACTTGGTAGTCG 57.641 36.000 0.00 0.00 35.78 4.18
3751 4145 7.094805 TGCTCATTTTGTTGATACTTGGTAGTC 60.095 37.037 0.00 0.00 35.78 2.59
3752 4146 6.714810 TGCTCATTTTGTTGATACTTGGTAGT 59.285 34.615 0.00 0.00 38.44 2.73
3753 4147 7.144722 TGCTCATTTTGTTGATACTTGGTAG 57.855 36.000 0.00 0.00 0.00 3.18
3754 4148 7.517614 TTGCTCATTTTGTTGATACTTGGTA 57.482 32.000 0.00 0.00 0.00 3.25
3755 4149 6.403866 TTGCTCATTTTGTTGATACTTGGT 57.596 33.333 0.00 0.00 0.00 3.67
3756 4150 7.652909 TCTTTTGCTCATTTTGTTGATACTTGG 59.347 33.333 0.00 0.00 0.00 3.61
3757 4151 8.578308 TCTTTTGCTCATTTTGTTGATACTTG 57.422 30.769 0.00 0.00 0.00 3.16
3758 4152 9.034544 GTTCTTTTGCTCATTTTGTTGATACTT 57.965 29.630 0.00 0.00 0.00 2.24
3759 4153 7.653311 GGTTCTTTTGCTCATTTTGTTGATACT 59.347 33.333 0.00 0.00 0.00 2.12
3760 4154 7.358352 CGGTTCTTTTGCTCATTTTGTTGATAC 60.358 37.037 0.00 0.00 0.00 2.24
3761 4155 6.640499 CGGTTCTTTTGCTCATTTTGTTGATA 59.360 34.615 0.00 0.00 0.00 2.15
3762 4156 5.463061 CGGTTCTTTTGCTCATTTTGTTGAT 59.537 36.000 0.00 0.00 0.00 2.57
3763 4157 4.803088 CGGTTCTTTTGCTCATTTTGTTGA 59.197 37.500 0.00 0.00 0.00 3.18
3764 4158 4.550639 GCGGTTCTTTTGCTCATTTTGTTG 60.551 41.667 0.00 0.00 0.00 3.33
3765 4159 3.555547 GCGGTTCTTTTGCTCATTTTGTT 59.444 39.130 0.00 0.00 0.00 2.83
3766 4160 3.123050 GCGGTTCTTTTGCTCATTTTGT 58.877 40.909 0.00 0.00 0.00 2.83
3767 4161 3.383761 AGCGGTTCTTTTGCTCATTTTG 58.616 40.909 0.00 0.00 32.44 2.44
3768 4162 3.733443 AGCGGTTCTTTTGCTCATTTT 57.267 38.095 0.00 0.00 32.44 1.82
3769 4163 3.181476 ACAAGCGGTTCTTTTGCTCATTT 60.181 39.130 0.00 0.00 38.17 2.32
3770 4164 2.362077 ACAAGCGGTTCTTTTGCTCATT 59.638 40.909 0.00 0.00 38.17 2.57
3771 4165 1.956477 ACAAGCGGTTCTTTTGCTCAT 59.044 42.857 0.00 0.00 38.17 2.90
3772 4166 1.388547 ACAAGCGGTTCTTTTGCTCA 58.611 45.000 0.00 0.00 38.17 4.26
3773 4167 2.665794 GCTACAAGCGGTTCTTTTGCTC 60.666 50.000 0.00 0.00 38.17 4.26
3774 4168 1.266989 GCTACAAGCGGTTCTTTTGCT 59.733 47.619 0.00 0.00 41.60 3.91
3775 4169 1.666023 GGCTACAAGCGGTTCTTTTGC 60.666 52.381 0.00 0.00 43.62 3.68
3776 4170 1.399727 CGGCTACAAGCGGTTCTTTTG 60.400 52.381 0.00 0.00 43.62 2.44
3777 4171 0.872388 CGGCTACAAGCGGTTCTTTT 59.128 50.000 0.00 0.00 43.62 2.27
3778 4172 0.034337 TCGGCTACAAGCGGTTCTTT 59.966 50.000 0.00 0.00 43.62 2.52
3779 4173 0.669625 GTCGGCTACAAGCGGTTCTT 60.670 55.000 0.00 0.00 43.62 2.52
3780 4174 1.080025 GTCGGCTACAAGCGGTTCT 60.080 57.895 0.00 0.00 43.62 3.01
3781 4175 2.442188 CGTCGGCTACAAGCGGTTC 61.442 63.158 0.00 0.00 43.62 3.62
3782 4176 2.431942 CGTCGGCTACAAGCGGTT 60.432 61.111 0.00 0.00 43.62 4.44
3783 4177 4.430765 CCGTCGGCTACAAGCGGT 62.431 66.667 0.00 0.00 43.62 5.68
3784 4178 4.124351 TCCGTCGGCTACAAGCGG 62.124 66.667 6.34 0.00 43.62 5.52
3785 4179 2.579787 CTCCGTCGGCTACAAGCG 60.580 66.667 6.34 0.00 43.62 4.68
3786 4180 1.516603 GTCTCCGTCGGCTACAAGC 60.517 63.158 6.34 0.00 41.46 4.01
3787 4181 1.139095 GGTCTCCGTCGGCTACAAG 59.861 63.158 6.34 0.00 0.00 3.16
3788 4182 1.604308 TGGTCTCCGTCGGCTACAA 60.604 57.895 6.34 0.00 0.00 2.41
3789 4183 2.034532 TGGTCTCCGTCGGCTACA 59.965 61.111 6.34 0.00 0.00 2.74
3790 4184 2.488820 GTGGTCTCCGTCGGCTAC 59.511 66.667 6.34 6.84 0.00 3.58
3791 4185 2.753043 GGTGGTCTCCGTCGGCTA 60.753 66.667 6.34 0.00 0.00 3.93
3792 4186 4.988716 TGGTGGTCTCCGTCGGCT 62.989 66.667 6.34 0.00 0.00 5.52
3793 4187 3.718210 GATGGTGGTCTCCGTCGGC 62.718 68.421 6.34 0.00 34.43 5.54
3794 4188 1.884075 TTGATGGTGGTCTCCGTCGG 61.884 60.000 4.39 4.39 44.05 4.79
3795 4189 0.458543 CTTGATGGTGGTCTCCGTCG 60.459 60.000 6.75 0.00 44.05 5.12
3796 4190 0.895530 TCTTGATGGTGGTCTCCGTC 59.104 55.000 4.77 4.77 42.15 4.79
3797 4191 1.208052 CATCTTGATGGTGGTCTCCGT 59.792 52.381 2.86 0.00 0.00 4.69
3798 4192 1.482182 TCATCTTGATGGTGGTCTCCG 59.518 52.381 10.29 0.00 0.00 4.63
3799 4193 2.768527 TCTCATCTTGATGGTGGTCTCC 59.231 50.000 10.29 0.00 0.00 3.71
3800 4194 3.703556 TCTCTCATCTTGATGGTGGTCTC 59.296 47.826 10.29 0.00 0.00 3.36
3801 4195 3.717576 TCTCTCATCTTGATGGTGGTCT 58.282 45.455 10.29 0.00 0.00 3.85
3802 4196 4.100653 TGATCTCTCATCTTGATGGTGGTC 59.899 45.833 10.29 8.36 0.00 4.02
3803 4197 4.035814 TGATCTCTCATCTTGATGGTGGT 58.964 43.478 10.29 0.31 0.00 4.16
3804 4198 4.684484 TGATCTCTCATCTTGATGGTGG 57.316 45.455 10.29 2.87 0.00 4.61
3815 4209 3.251016 TCTTCCCGGATGATCTCTCAT 57.749 47.619 0.73 0.00 44.93 2.90
3816 4210 2.755952 TCTTCCCGGATGATCTCTCA 57.244 50.000 0.73 0.00 35.41 3.27
3817 4211 2.962421 ACTTCTTCCCGGATGATCTCTC 59.038 50.000 0.73 0.00 0.00 3.20
3818 4212 2.697751 CACTTCTTCCCGGATGATCTCT 59.302 50.000 0.73 0.00 0.00 3.10
3819 4213 2.804933 GCACTTCTTCCCGGATGATCTC 60.805 54.545 0.73 0.00 0.00 2.75
3820 4214 1.139853 GCACTTCTTCCCGGATGATCT 59.860 52.381 0.73 0.00 0.00 2.75
3821 4215 1.134401 TGCACTTCTTCCCGGATGATC 60.134 52.381 0.73 0.00 0.00 2.92
3822 4216 0.911769 TGCACTTCTTCCCGGATGAT 59.088 50.000 0.73 0.00 0.00 2.45
3823 4217 0.690192 TTGCACTTCTTCCCGGATGA 59.310 50.000 0.73 0.00 0.00 2.92
3824 4218 0.804989 GTTGCACTTCTTCCCGGATG 59.195 55.000 0.73 0.00 0.00 3.51
3825 4219 0.673644 CGTTGCACTTCTTCCCGGAT 60.674 55.000 0.73 0.00 0.00 4.18
3826 4220 1.301401 CGTTGCACTTCTTCCCGGA 60.301 57.895 0.73 0.00 0.00 5.14
3827 4221 2.325082 CCGTTGCACTTCTTCCCGG 61.325 63.158 0.00 0.00 0.00 5.73
3828 4222 1.301401 TCCGTTGCACTTCTTCCCG 60.301 57.895 0.00 0.00 0.00 5.14
3829 4223 0.534203 TGTCCGTTGCACTTCTTCCC 60.534 55.000 0.00 0.00 0.00 3.97
3830 4224 1.002792 GTTGTCCGTTGCACTTCTTCC 60.003 52.381 0.00 0.00 0.00 3.46
3831 4225 1.332904 CGTTGTCCGTTGCACTTCTTC 60.333 52.381 0.00 0.00 0.00 2.87
3832 4226 0.655733 CGTTGTCCGTTGCACTTCTT 59.344 50.000 0.00 0.00 0.00 2.52
3833 4227 1.772063 GCGTTGTCCGTTGCACTTCT 61.772 55.000 0.00 0.00 39.32 2.85
3834 4228 1.368850 GCGTTGTCCGTTGCACTTC 60.369 57.895 0.00 0.00 39.32 3.01
3835 4229 2.713154 GCGTTGTCCGTTGCACTT 59.287 55.556 0.00 0.00 39.32 3.16
3836 4230 3.276846 GGCGTTGTCCGTTGCACT 61.277 61.111 0.00 0.00 39.32 4.40
3837 4231 4.659874 CGGCGTTGTCCGTTGCAC 62.660 66.667 0.00 0.00 44.18 4.57
3855 4249 2.579738 GTCTTGGAGCCCTCGGTC 59.420 66.667 0.00 0.00 35.68 4.79
3856 4250 3.382832 CGTCTTGGAGCCCTCGGT 61.383 66.667 0.00 0.00 0.00 4.69
3857 4251 2.427245 ATCGTCTTGGAGCCCTCGG 61.427 63.158 0.00 0.00 0.00 4.63
3858 4252 1.227089 CATCGTCTTGGAGCCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
3859 4253 1.522580 GCATCGTCTTGGAGCCCTC 60.523 63.158 0.00 0.00 0.00 4.30
3860 4254 2.586792 GCATCGTCTTGGAGCCCT 59.413 61.111 0.00 0.00 0.00 5.19
3861 4255 2.514824 GGCATCGTCTTGGAGCCC 60.515 66.667 0.00 0.00 39.42 5.19
3862 4256 1.522580 GAGGCATCGTCTTGGAGCC 60.523 63.158 0.00 0.00 45.54 4.70
3863 4257 1.522580 GGAGGCATCGTCTTGGAGC 60.523 63.158 0.00 0.00 0.00 4.70
3864 4258 0.250234 TTGGAGGCATCGTCTTGGAG 59.750 55.000 0.00 0.00 0.00 3.86
3865 4259 0.250234 CTTGGAGGCATCGTCTTGGA 59.750 55.000 0.00 0.00 0.00 3.53
3866 4260 0.250234 TCTTGGAGGCATCGTCTTGG 59.750 55.000 0.00 0.00 0.00 3.61
3867 4261 2.005451 CTTCTTGGAGGCATCGTCTTG 58.995 52.381 0.00 0.00 0.00 3.02
3868 4262 1.065854 CCTTCTTGGAGGCATCGTCTT 60.066 52.381 0.00 0.00 38.35 3.01
3869 4263 0.539051 CCTTCTTGGAGGCATCGTCT 59.461 55.000 0.00 0.00 38.35 4.18
3870 4264 0.462759 CCCTTCTTGGAGGCATCGTC 60.463 60.000 0.00 0.00 38.35 4.20
3871 4265 1.604378 CCCTTCTTGGAGGCATCGT 59.396 57.895 0.00 0.00 38.35 3.73
3872 4266 1.821332 GCCCTTCTTGGAGGCATCG 60.821 63.158 0.00 0.00 46.34 3.84
3873 4267 4.249513 GCCCTTCTTGGAGGCATC 57.750 61.111 0.00 0.00 46.34 3.91
3877 4271 1.376037 GTCGTGCCCTTCTTGGAGG 60.376 63.158 0.00 0.00 38.35 4.30
3878 4272 1.376037 GGTCGTGCCCTTCTTGGAG 60.376 63.158 0.00 0.00 38.35 3.86
3879 4273 2.144078 TGGTCGTGCCCTTCTTGGA 61.144 57.895 0.00 0.00 38.35 3.53
3880 4274 1.966451 GTGGTCGTGCCCTTCTTGG 60.966 63.158 0.00 0.00 36.04 3.61
3881 4275 1.227823 TGTGGTCGTGCCCTTCTTG 60.228 57.895 0.00 0.00 36.04 3.02
3882 4276 1.071471 CTGTGGTCGTGCCCTTCTT 59.929 57.895 0.00 0.00 36.04 2.52
3883 4277 1.837051 TCTGTGGTCGTGCCCTTCT 60.837 57.895 0.00 0.00 36.04 2.85
3884 4278 1.668151 GTCTGTGGTCGTGCCCTTC 60.668 63.158 0.00 0.00 36.04 3.46
3885 4279 2.426023 GTCTGTGGTCGTGCCCTT 59.574 61.111 0.00 0.00 36.04 3.95
3886 4280 3.626924 GGTCTGTGGTCGTGCCCT 61.627 66.667 0.00 0.00 36.04 5.19
3888 4282 4.295119 ACGGTCTGTGGTCGTGCC 62.295 66.667 0.00 0.00 35.70 5.01
3889 4283 2.733593 GACGGTCTGTGGTCGTGC 60.734 66.667 0.00 0.00 37.25 5.34
3893 4287 3.296709 ATGGCGACGGTCTGTGGTC 62.297 63.158 6.57 0.00 0.00 4.02
3894 4288 3.296709 GATGGCGACGGTCTGTGGT 62.297 63.158 6.57 0.00 0.00 4.16
3895 4289 2.509336 GATGGCGACGGTCTGTGG 60.509 66.667 6.57 0.00 0.00 4.17
3896 4290 2.880879 CGATGGCGACGGTCTGTG 60.881 66.667 6.57 0.00 40.82 3.66
3897 4291 3.338126 GACGATGGCGACGGTCTGT 62.338 63.158 6.57 0.00 41.64 3.41
3898 4292 2.579787 GACGATGGCGACGGTCTG 60.580 66.667 6.57 1.33 41.64 3.51
3899 4293 3.823330 GGACGATGGCGACGGTCT 61.823 66.667 6.57 0.00 41.64 3.85
3904 4298 4.867599 GGGTCGGACGATGGCGAC 62.868 72.222 1.43 0.00 41.64 5.19
3906 4300 3.943479 TTTGGGTCGGACGATGGCG 62.943 63.158 1.43 0.00 44.79 5.69
3907 4301 2.046700 TTTGGGTCGGACGATGGC 60.047 61.111 1.43 0.00 0.00 4.40
3908 4302 0.178068 ATCTTTGGGTCGGACGATGG 59.822 55.000 1.43 0.00 0.00 3.51
3909 4303 1.134818 TGATCTTTGGGTCGGACGATG 60.135 52.381 1.43 0.00 0.00 3.84
3910 4304 1.137086 CTGATCTTTGGGTCGGACGAT 59.863 52.381 1.43 0.00 0.00 3.73
3911 4305 0.530744 CTGATCTTTGGGTCGGACGA 59.469 55.000 1.43 0.00 0.00 4.20
3912 4306 0.460284 CCTGATCTTTGGGTCGGACG 60.460 60.000 1.43 0.00 0.00 4.79
3913 4307 0.613777 ACCTGATCTTTGGGTCGGAC 59.386 55.000 0.00 0.00 0.00 4.79
3914 4308 1.358152 AACCTGATCTTTGGGTCGGA 58.642 50.000 0.00 0.00 32.32 4.55
3915 4309 2.200373 AAACCTGATCTTTGGGTCGG 57.800 50.000 0.00 0.00 32.32 4.79
3916 4310 3.058224 GTGAAAACCTGATCTTTGGGTCG 60.058 47.826 0.00 0.00 32.32 4.79
3917 4311 3.255888 GGTGAAAACCTGATCTTTGGGTC 59.744 47.826 0.00 0.00 32.32 4.46
3918 4312 3.230976 GGTGAAAACCTGATCTTTGGGT 58.769 45.455 0.00 0.00 34.47 4.51
3919 4313 2.562738 GGGTGAAAACCTGATCTTTGGG 59.437 50.000 0.00 0.00 0.00 4.12
3920 4314 2.228822 CGGGTGAAAACCTGATCTTTGG 59.771 50.000 0.00 0.00 38.41 3.28
3921 4315 2.228822 CCGGGTGAAAACCTGATCTTTG 59.771 50.000 5.26 0.00 38.41 2.77
3922 4316 2.107552 TCCGGGTGAAAACCTGATCTTT 59.892 45.455 0.00 0.00 38.41 2.52
3923 4317 1.702957 TCCGGGTGAAAACCTGATCTT 59.297 47.619 0.00 0.00 38.41 2.40
3924 4318 1.358152 TCCGGGTGAAAACCTGATCT 58.642 50.000 0.00 0.00 38.41 2.75
3925 4319 1.810755 GTTCCGGGTGAAAACCTGATC 59.189 52.381 0.00 0.00 38.41 2.92
3926 4320 1.144093 TGTTCCGGGTGAAAACCTGAT 59.856 47.619 0.00 0.00 38.41 2.90
3927 4321 0.547075 TGTTCCGGGTGAAAACCTGA 59.453 50.000 0.00 0.00 38.41 3.86
3928 4322 1.336755 CTTGTTCCGGGTGAAAACCTG 59.663 52.381 0.00 0.00 33.94 4.00
3929 4323 1.213430 TCTTGTTCCGGGTGAAAACCT 59.787 47.619 0.00 0.00 33.94 3.50
3930 4324 1.335810 GTCTTGTTCCGGGTGAAAACC 59.664 52.381 0.00 0.00 33.94 3.27
3931 4325 1.003223 CGTCTTGTTCCGGGTGAAAAC 60.003 52.381 0.00 0.00 33.94 2.43
3932 4326 1.301423 CGTCTTGTTCCGGGTGAAAA 58.699 50.000 0.00 0.00 33.94 2.29
3933 4327 0.533308 CCGTCTTGTTCCGGGTGAAA 60.533 55.000 0.00 0.00 40.54 2.69
3934 4328 1.070105 CCGTCTTGTTCCGGGTGAA 59.930 57.895 0.00 0.00 40.54 3.18
3935 4329 2.738480 CCGTCTTGTTCCGGGTGA 59.262 61.111 0.00 0.00 40.54 4.02
3939 4333 2.264794 CCTCCCGTCTTGTTCCGG 59.735 66.667 0.00 0.00 43.82 5.14
3940 4334 3.373226 TCCTCCCGTCTTGTTCCG 58.627 61.111 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.