Multiple sequence alignment - TraesCS3D01G296300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G296300 chr3D 100.000 1817 0 0 1 1817 410299296 410301112 0.000000e+00 3356.0
1 TraesCS3D01G296300 chr3D 100.000 322 0 0 2097 2418 410301392 410301713 1.600000e-166 595.0
2 TraesCS3D01G296300 chr3D 99.645 282 1 0 2097 2378 410300799 410301080 1.280000e-142 516.0
3 TraesCS3D01G296300 chr3D 99.645 282 1 0 1504 1785 410301392 410301673 1.280000e-142 516.0
4 TraesCS3D01G296300 chr3D 100.000 30 0 0 5 34 169682295 169682324 3.360000e-04 56.5
5 TraesCS3D01G296300 chr3D 100.000 30 0 0 1 30 474819666 474819695 3.360000e-04 56.5
6 TraesCS3D01G296300 chr3B 90.677 1684 100 28 3 1665 536048044 536049691 0.000000e+00 2187.0
7 TraesCS3D01G296300 chr3A 87.243 1607 112 62 119 1704 541483872 541482338 0.000000e+00 1746.0
8 TraesCS3D01G296300 chr2B 96.262 214 8 0 1209 1422 614644240 614644453 3.820000e-93 351.0
9 TraesCS3D01G296300 chr2B 95.794 214 9 0 1209 1422 109887974 109888187 1.780000e-91 346.0
10 TraesCS3D01G296300 chr1D 95.370 216 10 0 1207 1422 288859574 288859789 6.400000e-91 344.0
11 TraesCS3D01G296300 chr1D 94.444 216 12 0 990 1205 288859307 288859522 1.390000e-87 333.0
12 TraesCS3D01G296300 chr1D 100.000 30 0 0 3 32 6826278 6826249 3.360000e-04 56.5
13 TraesCS3D01G296300 chr2A 94.860 214 11 0 1209 1422 354530187 354530400 3.850000e-88 335.0
14 TraesCS3D01G296300 chr2A 94.393 214 12 0 1209 1422 494100033 494099820 1.790000e-86 329.0
15 TraesCS3D01G296300 chr2A 93.981 216 13 0 990 1205 354529918 354530133 6.450000e-86 327.0
16 TraesCS3D01G296300 chr1B 94.860 214 11 0 1209 1422 126922659 126922872 3.850000e-88 335.0
17 TraesCS3D01G296300 chr1B 93.981 216 13 0 990 1205 126922390 126922605 6.450000e-86 327.0
18 TraesCS3D01G296300 chr7D 94.444 216 12 0 1207 1422 61522959 61522744 1.390000e-87 333.0
19 TraesCS3D01G296300 chr7D 93.151 219 14 1 990 1208 61523225 61523008 1.080000e-83 320.0
20 TraesCS3D01G296300 chr5B 94.064 219 13 0 990 1208 525549057 525548839 1.390000e-87 333.0
21 TraesCS3D01G296300 chr5B 97.059 34 1 0 1 34 533569871 533569838 9.340000e-05 58.4
22 TraesCS3D01G296300 chr5B 96.875 32 1 0 3 34 508786119 508786088 1.000000e-03 54.7
23 TraesCS3D01G296300 chr4D 94.064 219 13 0 990 1208 382848085 382847867 1.390000e-87 333.0
24 TraesCS3D01G296300 chr7A 93.056 216 14 1 990 1205 320508528 320508742 5.020000e-82 315.0
25 TraesCS3D01G296300 chr7A 100.000 30 0 0 3 32 526137994 526137965 3.360000e-04 56.5
26 TraesCS3D01G296300 chr7B 100.000 31 0 0 1 31 27599691 27599721 9.340000e-05 58.4
27 TraesCS3D01G296300 chrUn 100.000 29 0 0 3 31 446005899 446005927 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G296300 chr3D 410299296 410301713 2417 False 1245.75 3356 99.8225 1 2418 4 chr3D.!!$F3 2417
1 TraesCS3D01G296300 chr3B 536048044 536049691 1647 False 2187.00 2187 90.6770 3 1665 1 chr3B.!!$F1 1662
2 TraesCS3D01G296300 chr3A 541482338 541483872 1534 True 1746.00 1746 87.2430 119 1704 1 chr3A.!!$R1 1585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1035 1.011595 TAGCAGAGAAGGGAGGGAGT 58.988 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2179 0.039256 GCGGTGCAAAAGCTGAATCA 60.039 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.730269 TAAAAGCGTTTTTGACACTAGTCG 58.270 37.500 18.77 0.00 39.53 4.18
61 62 9.167311 GCTTTTATATCATATTCATTCCGTCCT 57.833 33.333 0.00 0.00 0.00 3.85
69 70 8.842358 TCATATTCATTCCGTCCTAAAATACC 57.158 34.615 0.00 0.00 0.00 2.73
71 72 8.721478 CATATTCATTCCGTCCTAAAATACCTG 58.279 37.037 0.00 0.00 0.00 4.00
74 75 4.476628 TTCCGTCCTAAAATACCTGTCC 57.523 45.455 0.00 0.00 0.00 4.02
217 219 1.524621 CAACTGGGCCATAGCTCCG 60.525 63.158 6.72 0.00 39.53 4.63
224 226 1.692411 GGCCATAGCTCCGGAAAAAT 58.308 50.000 5.23 0.00 39.73 1.82
272 274 2.641815 AGAGCTCTTCCCTTTCACATGT 59.358 45.455 11.45 0.00 0.00 3.21
331 333 6.073548 GCTTGTTCCGATCCAAGAATACATAG 60.074 42.308 12.09 0.00 40.36 2.23
332 334 6.479972 TGTTCCGATCCAAGAATACATAGT 57.520 37.500 0.00 0.00 0.00 2.12
333 335 7.591421 TGTTCCGATCCAAGAATACATAGTA 57.409 36.000 0.00 0.00 0.00 1.82
394 398 5.049680 CACTGTAACCCACACATGTCTTAAC 60.050 44.000 0.00 0.00 32.33 2.01
406 417 8.853345 CACACATGTCTTAACAATAATGAAAGC 58.147 33.333 0.00 0.00 39.30 3.51
559 580 4.795970 ACAAAAATATCGATCGAGCCAC 57.204 40.909 23.84 0.00 0.00 5.01
565 586 1.043816 ATCGATCGAGCCACCAGAAT 58.956 50.000 23.84 0.00 0.00 2.40
640 664 8.348285 TCAAAAGGAGAAAAGAAAGAACTCAA 57.652 30.769 0.00 0.00 0.00 3.02
644 668 5.298026 AGGAGAAAAGAAAGAACTCAACAGC 59.702 40.000 0.00 0.00 0.00 4.40
645 669 5.066505 GGAGAAAAGAAAGAACTCAACAGCA 59.933 40.000 0.00 0.00 0.00 4.41
646 670 6.129053 AGAAAAGAAAGAACTCAACAGCAG 57.871 37.500 0.00 0.00 0.00 4.24
647 671 3.978718 AAGAAAGAACTCAACAGCAGC 57.021 42.857 0.00 0.00 0.00 5.25
648 672 2.923121 AGAAAGAACTCAACAGCAGCA 58.077 42.857 0.00 0.00 0.00 4.41
649 673 2.877168 AGAAAGAACTCAACAGCAGCAG 59.123 45.455 0.00 0.00 0.00 4.24
650 674 1.602311 AAGAACTCAACAGCAGCAGG 58.398 50.000 0.00 0.00 0.00 4.85
665 689 2.177950 CAGGCAACAGCATCTCCAC 58.822 57.895 0.00 0.00 41.41 4.02
780 809 3.689649 AGCACGTCAAGTTGTTTTCTCTT 59.310 39.130 2.11 0.00 0.00 2.85
785 814 4.956184 CGTCAAGTTGTTTTCTCTTTCGAC 59.044 41.667 2.11 0.00 0.00 4.20
786 815 5.220416 CGTCAAGTTGTTTTCTCTTTCGACT 60.220 40.000 2.11 0.00 0.00 4.18
797 826 2.841329 CTCTTTCGACTTCTCGTTAGCG 59.159 50.000 0.00 0.00 41.02 4.26
871 900 2.735151 GCCTACAAAAGGGGCATAAGT 58.265 47.619 0.00 0.00 46.65 2.24
901 930 1.202782 AGCTGCTCCATCCATCATCAC 60.203 52.381 0.00 0.00 0.00 3.06
992 1035 1.011595 TAGCAGAGAAGGGAGGGAGT 58.988 55.000 0.00 0.00 0.00 3.85
1147 1190 3.817647 GCACATCAAGAAGGTGAGAAACT 59.182 43.478 8.76 0.00 34.52 2.66
1174 1219 0.323908 CCCGCCCCCAAATCTACAAA 60.324 55.000 0.00 0.00 0.00 2.83
1201 1247 5.793817 TGAATCTGCAAGTAACAAGCTAGA 58.206 37.500 0.00 0.00 33.76 2.43
1205 1251 3.575630 TGCAAGTAACAAGCTAGAGACG 58.424 45.455 0.00 0.00 0.00 4.18
1242 1288 5.475909 CGGAATGATTGGATCTGATTTGGAT 59.524 40.000 0.00 0.00 0.00 3.41
1271 1317 0.171455 GCAGGAGTTCGACACGATCT 59.829 55.000 4.76 4.76 38.40 2.75
1367 1413 0.109551 CTTCAAGCTCGAGTCGCTCA 60.110 55.000 15.13 0.00 36.56 4.26
1378 1424 1.444553 GTCGCTCAGGTTCCTCGTG 60.445 63.158 0.00 0.00 0.00 4.35
1476 1526 2.660258 GATGATTACGGGGCGGCAGT 62.660 60.000 12.47 12.97 0.00 4.40
1479 1529 1.153309 ATTACGGGGCGGCAGTTAC 60.153 57.895 12.47 0.00 0.00 2.50
1480 1530 1.619807 ATTACGGGGCGGCAGTTACT 61.620 55.000 12.47 0.00 0.00 2.24
1481 1531 2.510064 TTACGGGGCGGCAGTTACTG 62.510 60.000 12.47 8.18 34.12 2.74
1504 1554 4.734917 CCTACTAGTCTGAAACAGTTCCG 58.265 47.826 0.00 0.00 32.28 4.30
1513 1563 2.685388 TGAAACAGTTCCGTGAAATGCA 59.315 40.909 12.06 0.00 40.62 3.96
1522 1572 3.615155 TCCGTGAAATGCACCAATATGA 58.385 40.909 0.00 0.00 44.85 2.15
1523 1573 4.206375 TCCGTGAAATGCACCAATATGAT 58.794 39.130 0.00 0.00 44.85 2.45
1524 1574 5.372373 TCCGTGAAATGCACCAATATGATA 58.628 37.500 0.00 0.00 44.85 2.15
1525 1575 6.003326 TCCGTGAAATGCACCAATATGATAT 58.997 36.000 0.00 0.00 44.85 1.63
1526 1576 6.072563 TCCGTGAAATGCACCAATATGATATG 60.073 38.462 0.00 0.00 44.85 1.78
1527 1577 5.570206 CGTGAAATGCACCAATATGATATGC 59.430 40.000 0.00 0.00 44.85 3.14
1528 1578 6.569035 CGTGAAATGCACCAATATGATATGCT 60.569 38.462 0.00 0.00 44.85 3.79
1536 1586 7.080099 GCACCAATATGATATGCTGTAACTTG 58.920 38.462 0.00 0.00 33.44 3.16
1537 1587 7.041167 GCACCAATATGATATGCTGTAACTTGA 60.041 37.037 0.00 0.00 33.44 3.02
1603 1653 1.393603 TGCGTTGAATGGTGTGGAAA 58.606 45.000 0.00 0.00 0.00 3.13
1652 1703 9.775854 ACTTTGATTCAGATGAATACAGATAGG 57.224 33.333 8.01 0.00 44.14 2.57
1681 1732 8.757982 ATTCAGTATATTGGTGAAGAATTGCT 57.242 30.769 0.00 0.00 33.83 3.91
1682 1733 7.558161 TCAGTATATTGGTGAAGAATTGCTG 57.442 36.000 0.00 0.00 0.00 4.41
1683 1734 6.038603 TCAGTATATTGGTGAAGAATTGCTGC 59.961 38.462 0.00 0.00 0.00 5.25
1684 1735 5.887598 AGTATATTGGTGAAGAATTGCTGCA 59.112 36.000 0.00 0.00 0.00 4.41
1685 1736 3.587797 ATTGGTGAAGAATTGCTGCAG 57.412 42.857 10.11 10.11 30.92 4.41
1686 1737 2.275134 TGGTGAAGAATTGCTGCAGA 57.725 45.000 20.43 0.00 30.92 4.26
1687 1738 2.585330 TGGTGAAGAATTGCTGCAGAA 58.415 42.857 20.43 2.96 30.92 3.02
1688 1739 3.159472 TGGTGAAGAATTGCTGCAGAAT 58.841 40.909 20.43 11.49 30.92 2.40
1689 1740 3.192001 TGGTGAAGAATTGCTGCAGAATC 59.808 43.478 20.43 1.77 30.92 2.52
1690 1741 3.192001 GGTGAAGAATTGCTGCAGAATCA 59.808 43.478 20.43 4.04 30.92 2.57
1691 1742 4.413087 GTGAAGAATTGCTGCAGAATCAG 58.587 43.478 20.43 0.00 30.92 2.90
1692 1743 4.077108 TGAAGAATTGCTGCAGAATCAGT 58.923 39.130 20.43 0.00 36.49 3.41
1693 1744 4.521639 TGAAGAATTGCTGCAGAATCAGTT 59.478 37.500 20.43 9.10 36.49 3.16
1694 1745 4.436242 AGAATTGCTGCAGAATCAGTTG 57.564 40.909 20.43 0.00 36.49 3.16
1695 1746 3.192844 AGAATTGCTGCAGAATCAGTTGG 59.807 43.478 20.43 0.00 36.49 3.77
1696 1747 1.985473 TTGCTGCAGAATCAGTTGGT 58.015 45.000 20.43 0.00 36.49 3.67
1697 1748 1.985473 TGCTGCAGAATCAGTTGGTT 58.015 45.000 20.43 0.00 36.49 3.67
1698 1749 2.309613 TGCTGCAGAATCAGTTGGTTT 58.690 42.857 20.43 0.00 36.49 3.27
1699 1750 2.694628 TGCTGCAGAATCAGTTGGTTTT 59.305 40.909 20.43 0.00 36.49 2.43
1700 1751 3.132646 TGCTGCAGAATCAGTTGGTTTTT 59.867 39.130 20.43 0.00 36.49 1.94
1701 1752 3.492011 GCTGCAGAATCAGTTGGTTTTTG 59.508 43.478 20.43 0.00 36.49 2.44
1702 1753 4.053295 CTGCAGAATCAGTTGGTTTTTGG 58.947 43.478 8.42 0.00 0.00 3.28
1703 1754 2.802247 GCAGAATCAGTTGGTTTTTGGC 59.198 45.455 0.00 0.00 0.00 4.52
1704 1755 3.392882 CAGAATCAGTTGGTTTTTGGCC 58.607 45.455 0.00 0.00 0.00 5.36
1705 1756 2.035832 AGAATCAGTTGGTTTTTGGCCG 59.964 45.455 0.00 0.00 0.00 6.13
1706 1757 1.698506 ATCAGTTGGTTTTTGGCCGA 58.301 45.000 0.00 0.00 0.00 5.54
1707 1758 1.475403 TCAGTTGGTTTTTGGCCGAA 58.525 45.000 0.00 0.00 0.00 4.30
1708 1759 1.825474 TCAGTTGGTTTTTGGCCGAAA 59.175 42.857 14.56 14.56 0.00 3.46
1709 1760 2.159170 TCAGTTGGTTTTTGGCCGAAAG 60.159 45.455 17.68 5.38 0.00 2.62
1710 1761 2.104170 AGTTGGTTTTTGGCCGAAAGA 58.896 42.857 17.68 7.17 0.00 2.52
1711 1762 2.698274 AGTTGGTTTTTGGCCGAAAGAT 59.302 40.909 17.68 0.19 0.00 2.40
1712 1763 2.799978 GTTGGTTTTTGGCCGAAAGATG 59.200 45.455 17.68 0.00 0.00 2.90
1713 1764 1.270041 TGGTTTTTGGCCGAAAGATGC 60.270 47.619 17.68 9.78 0.00 3.91
1714 1765 1.000843 GGTTTTTGGCCGAAAGATGCT 59.999 47.619 17.68 0.00 0.00 3.79
1715 1766 2.328473 GTTTTTGGCCGAAAGATGCTC 58.672 47.619 17.68 3.42 0.00 4.26
1716 1767 1.909700 TTTTGGCCGAAAGATGCTCT 58.090 45.000 14.56 0.00 0.00 4.09
1717 1768 1.909700 TTTGGCCGAAAGATGCTCTT 58.090 45.000 1.75 0.00 38.59 2.85
1718 1769 1.453155 TTGGCCGAAAGATGCTCTTC 58.547 50.000 0.00 0.00 35.27 2.87
1719 1770 0.324614 TGGCCGAAAGATGCTCTTCA 59.675 50.000 0.00 0.00 35.27 3.02
1720 1771 1.271325 TGGCCGAAAGATGCTCTTCAA 60.271 47.619 0.00 0.00 35.27 2.69
1721 1772 2.019984 GGCCGAAAGATGCTCTTCAAT 58.980 47.619 0.00 0.00 35.27 2.57
1722 1773 2.223433 GGCCGAAAGATGCTCTTCAATG 60.223 50.000 0.00 0.00 35.27 2.82
1723 1774 2.421424 GCCGAAAGATGCTCTTCAATGT 59.579 45.455 0.00 0.00 35.27 2.71
1724 1775 3.623060 GCCGAAAGATGCTCTTCAATGTA 59.377 43.478 0.00 0.00 35.27 2.29
1725 1776 4.094887 GCCGAAAGATGCTCTTCAATGTAA 59.905 41.667 0.00 0.00 35.27 2.41
1726 1777 5.563842 CCGAAAGATGCTCTTCAATGTAAC 58.436 41.667 0.00 0.00 35.27 2.50
1727 1778 5.352569 CCGAAAGATGCTCTTCAATGTAACT 59.647 40.000 0.00 0.00 35.27 2.24
1728 1779 6.128172 CCGAAAGATGCTCTTCAATGTAACTT 60.128 38.462 0.00 0.00 35.27 2.66
1729 1780 6.740002 CGAAAGATGCTCTTCAATGTAACTTG 59.260 38.462 0.00 0.00 35.27 3.16
1730 1781 5.557891 AGATGCTCTTCAATGTAACTTGC 57.442 39.130 0.00 0.00 0.00 4.01
1731 1782 4.397417 AGATGCTCTTCAATGTAACTTGCC 59.603 41.667 0.00 0.00 0.00 4.52
1732 1783 3.754965 TGCTCTTCAATGTAACTTGCCT 58.245 40.909 0.00 0.00 0.00 4.75
1733 1784 3.503363 TGCTCTTCAATGTAACTTGCCTG 59.497 43.478 0.00 0.00 0.00 4.85
1734 1785 3.503748 GCTCTTCAATGTAACTTGCCTGT 59.496 43.478 0.00 0.00 0.00 4.00
1735 1786 4.695455 GCTCTTCAATGTAACTTGCCTGTA 59.305 41.667 0.00 0.00 0.00 2.74
1736 1787 5.181245 GCTCTTCAATGTAACTTGCCTGTAA 59.819 40.000 0.00 0.00 0.00 2.41
1737 1788 6.293955 GCTCTTCAATGTAACTTGCCTGTAAA 60.294 38.462 0.00 0.00 0.00 2.01
1738 1789 6.966021 TCTTCAATGTAACTTGCCTGTAAAC 58.034 36.000 0.00 0.00 0.00 2.01
1739 1790 5.351233 TCAATGTAACTTGCCTGTAAACG 57.649 39.130 0.00 0.00 0.00 3.60
1740 1791 4.817464 TCAATGTAACTTGCCTGTAAACGT 59.183 37.500 0.00 0.00 0.00 3.99
1741 1792 4.742438 ATGTAACTTGCCTGTAAACGTG 57.258 40.909 0.00 0.00 0.00 4.49
1742 1793 2.873472 TGTAACTTGCCTGTAAACGTGG 59.127 45.455 0.00 0.00 0.00 4.94
1743 1794 2.047002 AACTTGCCTGTAAACGTGGT 57.953 45.000 0.00 0.00 0.00 4.16
1744 1795 1.589803 ACTTGCCTGTAAACGTGGTC 58.410 50.000 0.00 0.00 0.00 4.02
1745 1796 0.872388 CTTGCCTGTAAACGTGGTCC 59.128 55.000 0.00 0.00 0.00 4.46
1746 1797 0.470766 TTGCCTGTAAACGTGGTCCT 59.529 50.000 0.00 0.00 0.00 3.85
1747 1798 0.470766 TGCCTGTAAACGTGGTCCTT 59.529 50.000 0.00 0.00 0.00 3.36
1748 1799 1.134037 TGCCTGTAAACGTGGTCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
1749 1800 1.951602 GCCTGTAAACGTGGTCCTTTT 59.048 47.619 0.00 0.00 0.00 2.27
1750 1801 2.031420 GCCTGTAAACGTGGTCCTTTTC 60.031 50.000 0.00 0.00 0.00 2.29
1751 1802 2.222445 CCTGTAAACGTGGTCCTTTTCG 59.778 50.000 0.00 0.00 0.00 3.46
1752 1803 2.211806 TGTAAACGTGGTCCTTTTCGG 58.788 47.619 0.00 0.00 0.00 4.30
1753 1804 1.069703 GTAAACGTGGTCCTTTTCGGC 60.070 52.381 0.00 0.00 0.00 5.54
1754 1805 0.464916 AAACGTGGTCCTTTTCGGCT 60.465 50.000 0.00 0.00 0.00 5.52
1755 1806 1.164041 AACGTGGTCCTTTTCGGCTG 61.164 55.000 0.00 0.00 0.00 4.85
1756 1807 2.325082 CGTGGTCCTTTTCGGCTGG 61.325 63.158 0.00 0.00 0.00 4.85
1757 1808 1.072505 GTGGTCCTTTTCGGCTGGA 59.927 57.895 0.00 0.00 0.00 3.86
1758 1809 1.072505 TGGTCCTTTTCGGCTGGAC 59.927 57.895 0.00 0.00 46.83 4.02
1759 1810 3.562635 GTCCTTTTCGGCTGGACG 58.437 61.111 0.00 0.00 40.44 4.79
1760 1811 1.005394 GTCCTTTTCGGCTGGACGA 60.005 57.895 0.00 0.00 40.44 4.20
1770 1821 4.659111 TCGGCTGGACGAAAGATATAAA 57.341 40.909 0.00 0.00 40.34 1.40
1771 1822 5.013568 TCGGCTGGACGAAAGATATAAAA 57.986 39.130 0.00 0.00 40.34 1.52
1772 1823 5.421277 TCGGCTGGACGAAAGATATAAAAA 58.579 37.500 0.00 0.00 40.34 1.94
2120 2171 5.570206 CGTGAAATGCACCAATATGATATGC 59.430 40.000 0.00 0.00 44.85 3.14
2121 2172 6.569035 CGTGAAATGCACCAATATGATATGCT 60.569 38.462 0.00 0.00 44.85 3.79
2122 2173 6.584942 GTGAAATGCACCAATATGATATGCTG 59.415 38.462 0.00 0.00 41.78 4.41
2123 2174 6.265876 TGAAATGCACCAATATGATATGCTGT 59.734 34.615 0.00 0.00 37.20 4.40
2124 2175 7.447853 TGAAATGCACCAATATGATATGCTGTA 59.552 33.333 0.00 0.00 37.20 2.74
2125 2176 7.764141 AATGCACCAATATGATATGCTGTAA 57.236 32.000 0.00 0.00 37.20 2.41
2126 2177 6.558771 TGCACCAATATGATATGCTGTAAC 57.441 37.500 0.00 0.00 37.20 2.50
2127 2178 6.298361 TGCACCAATATGATATGCTGTAACT 58.702 36.000 0.00 0.00 37.20 2.24
2128 2179 6.772233 TGCACCAATATGATATGCTGTAACTT 59.228 34.615 0.00 0.00 37.20 2.66
2129 2180 7.080099 GCACCAATATGATATGCTGTAACTTG 58.920 38.462 0.00 0.00 33.44 3.16
2130 2181 7.041167 GCACCAATATGATATGCTGTAACTTGA 60.041 37.037 0.00 0.00 33.44 3.02
2131 2182 9.006839 CACCAATATGATATGCTGTAACTTGAT 57.993 33.333 0.00 0.00 0.00 2.57
2132 2183 9.578576 ACCAATATGATATGCTGTAACTTGATT 57.421 29.630 0.00 0.00 0.00 2.57
2142 2193 4.383948 GCTGTAACTTGATTCAGCTTTTGC 59.616 41.667 8.46 0.00 46.35 3.68
2163 2214 3.253955 GCAATTCGCGAGTGTGGT 58.746 55.556 19.27 0.00 0.00 4.16
2164 2215 1.132640 GCAATTCGCGAGTGTGGTC 59.867 57.895 19.27 3.49 0.00 4.02
2165 2216 1.291877 GCAATTCGCGAGTGTGGTCT 61.292 55.000 19.27 0.00 0.00 3.85
2166 2217 0.439985 CAATTCGCGAGTGTGGTCTG 59.560 55.000 9.59 0.00 0.00 3.51
2167 2218 0.317160 AATTCGCGAGTGTGGTCTGA 59.683 50.000 9.59 0.00 0.00 3.27
2168 2219 0.317160 ATTCGCGAGTGTGGTCTGAA 59.683 50.000 9.59 0.00 0.00 3.02
2169 2220 0.103390 TTCGCGAGTGTGGTCTGAAA 59.897 50.000 9.59 0.00 0.00 2.69
2170 2221 0.596600 TCGCGAGTGTGGTCTGAAAC 60.597 55.000 3.71 0.00 0.00 2.78
2171 2222 0.597637 CGCGAGTGTGGTCTGAAACT 60.598 55.000 0.00 0.00 0.00 2.66
2172 2223 1.140816 GCGAGTGTGGTCTGAAACTC 58.859 55.000 0.00 0.00 36.52 3.01
2173 2224 1.269831 GCGAGTGTGGTCTGAAACTCT 60.270 52.381 0.00 3.84 37.49 3.24
2174 2225 2.398498 CGAGTGTGGTCTGAAACTCTG 58.602 52.381 0.00 0.00 37.49 3.35
2175 2226 2.034685 CGAGTGTGGTCTGAAACTCTGA 59.965 50.000 0.00 0.00 37.49 3.27
2176 2227 3.490933 CGAGTGTGGTCTGAAACTCTGAA 60.491 47.826 0.00 0.00 37.49 3.02
2177 2228 4.636249 GAGTGTGGTCTGAAACTCTGAAT 58.364 43.478 0.00 0.00 36.85 2.57
2178 2229 4.384056 AGTGTGGTCTGAAACTCTGAATG 58.616 43.478 0.00 0.00 0.00 2.67
2179 2230 3.058639 GTGTGGTCTGAAACTCTGAATGC 60.059 47.826 0.00 0.00 0.00 3.56
2180 2231 2.158449 GTGGTCTGAAACTCTGAATGCG 59.842 50.000 0.00 0.00 0.00 4.73
2181 2232 2.224281 TGGTCTGAAACTCTGAATGCGT 60.224 45.455 0.00 0.00 0.00 5.24
2182 2233 2.808543 GGTCTGAAACTCTGAATGCGTT 59.191 45.455 0.00 0.00 0.00 4.84
2183 2234 3.364366 GGTCTGAAACTCTGAATGCGTTG 60.364 47.826 0.00 0.00 0.00 4.10
2184 2235 3.494626 GTCTGAAACTCTGAATGCGTTGA 59.505 43.478 0.00 0.00 0.00 3.18
2185 2236 4.024893 GTCTGAAACTCTGAATGCGTTGAA 60.025 41.667 0.00 0.00 0.00 2.69
2186 2237 4.756642 TCTGAAACTCTGAATGCGTTGAAT 59.243 37.500 0.00 0.00 0.00 2.57
2187 2238 4.786507 TGAAACTCTGAATGCGTTGAATG 58.213 39.130 0.00 0.00 0.00 2.67
2188 2239 3.837213 AACTCTGAATGCGTTGAATGG 57.163 42.857 0.00 0.00 0.00 3.16
2189 2240 2.783135 ACTCTGAATGCGTTGAATGGT 58.217 42.857 0.00 0.00 0.00 3.55
2190 2241 2.485426 ACTCTGAATGCGTTGAATGGTG 59.515 45.455 0.00 0.00 0.00 4.17
2191 2242 2.485426 CTCTGAATGCGTTGAATGGTGT 59.515 45.455 0.00 0.00 0.00 4.16
2192 2243 2.226200 TCTGAATGCGTTGAATGGTGTG 59.774 45.455 0.00 0.00 0.00 3.82
2193 2244 1.269174 TGAATGCGTTGAATGGTGTGG 59.731 47.619 0.00 0.00 0.00 4.17
2194 2245 1.539388 GAATGCGTTGAATGGTGTGGA 59.461 47.619 0.00 0.00 0.00 4.02
2195 2246 1.614996 ATGCGTTGAATGGTGTGGAA 58.385 45.000 0.00 0.00 0.00 3.53
2196 2247 1.393603 TGCGTTGAATGGTGTGGAAA 58.606 45.000 0.00 0.00 0.00 3.13
2197 2248 1.959985 TGCGTTGAATGGTGTGGAAAT 59.040 42.857 0.00 0.00 0.00 2.17
2198 2249 2.288091 TGCGTTGAATGGTGTGGAAATG 60.288 45.455 0.00 0.00 0.00 2.32
2199 2250 2.030363 GCGTTGAATGGTGTGGAAATGA 60.030 45.455 0.00 0.00 0.00 2.57
2200 2251 3.367292 GCGTTGAATGGTGTGGAAATGAT 60.367 43.478 0.00 0.00 0.00 2.45
2201 2252 4.414852 CGTTGAATGGTGTGGAAATGATC 58.585 43.478 0.00 0.00 0.00 2.92
2202 2253 4.156556 CGTTGAATGGTGTGGAAATGATCT 59.843 41.667 0.00 0.00 0.00 2.75
2203 2254 5.335897 CGTTGAATGGTGTGGAAATGATCTT 60.336 40.000 0.00 0.00 0.00 2.40
2204 2255 5.902613 TGAATGGTGTGGAAATGATCTTC 57.097 39.130 0.00 0.00 0.00 2.87
2205 2256 5.323581 TGAATGGTGTGGAAATGATCTTCA 58.676 37.500 0.00 0.00 0.00 3.02
2206 2257 5.774184 TGAATGGTGTGGAAATGATCTTCAA 59.226 36.000 0.00 0.00 0.00 2.69
2207 2258 6.267242 TGAATGGTGTGGAAATGATCTTCAAA 59.733 34.615 0.00 0.00 0.00 2.69
2208 2259 5.452078 TGGTGTGGAAATGATCTTCAAAC 57.548 39.130 0.00 0.00 0.00 2.93
2209 2260 4.892345 TGGTGTGGAAATGATCTTCAAACA 59.108 37.500 0.00 0.00 0.00 2.83
2210 2261 5.539574 TGGTGTGGAAATGATCTTCAAACAT 59.460 36.000 0.00 0.00 30.68 2.71
2211 2262 5.865552 GGTGTGGAAATGATCTTCAAACATG 59.134 40.000 0.00 0.00 30.68 3.21
2212 2263 6.294675 GGTGTGGAAATGATCTTCAAACATGA 60.295 38.462 0.00 0.00 30.68 3.07
2213 2264 7.318141 GTGTGGAAATGATCTTCAAACATGAT 58.682 34.615 0.00 0.00 30.68 2.45
2214 2265 7.274904 GTGTGGAAATGATCTTCAAACATGATG 59.725 37.037 0.00 0.00 30.68 3.07
2215 2266 7.039574 TGTGGAAATGATCTTCAAACATGATGT 60.040 33.333 0.00 0.00 0.00 3.06
2216 2267 7.816031 GTGGAAATGATCTTCAAACATGATGTT 59.184 33.333 4.72 4.72 43.41 2.71
2217 2268 8.030692 TGGAAATGATCTTCAAACATGATGTTC 58.969 33.333 11.70 0.00 40.14 3.18
2218 2269 7.490402 GGAAATGATCTTCAAACATGATGTTCC 59.510 37.037 11.70 0.00 40.14 3.62
2219 2270 7.470935 AATGATCTTCAAACATGATGTTCCA 57.529 32.000 11.70 0.00 40.14 3.53
2220 2271 6.258230 TGATCTTCAAACATGATGTTCCAC 57.742 37.500 11.70 1.00 40.14 4.02
2221 2272 6.005823 TGATCTTCAAACATGATGTTCCACT 58.994 36.000 11.70 0.00 40.14 4.00
2222 2273 6.491062 TGATCTTCAAACATGATGTTCCACTT 59.509 34.615 11.70 0.00 40.14 3.16
2223 2274 6.713762 TCTTCAAACATGATGTTCCACTTT 57.286 33.333 11.70 0.00 40.14 2.66
2224 2275 6.506147 TCTTCAAACATGATGTTCCACTTTG 58.494 36.000 11.70 5.25 40.14 2.77
2225 2276 6.320926 TCTTCAAACATGATGTTCCACTTTGA 59.679 34.615 11.70 7.57 40.14 2.69
2226 2277 6.653526 TCAAACATGATGTTCCACTTTGAT 57.346 33.333 11.70 0.00 40.14 2.57
2227 2278 7.053316 TCAAACATGATGTTCCACTTTGATT 57.947 32.000 11.70 0.00 40.14 2.57
2228 2279 7.147312 TCAAACATGATGTTCCACTTTGATTC 58.853 34.615 11.70 0.00 40.14 2.52
2229 2280 6.653526 AACATGATGTTCCACTTTGATTCA 57.346 33.333 4.72 0.00 35.27 2.57
2230 2281 6.263516 ACATGATGTTCCACTTTGATTCAG 57.736 37.500 0.00 0.00 0.00 3.02
2231 2282 6.005823 ACATGATGTTCCACTTTGATTCAGA 58.994 36.000 0.00 0.00 0.00 3.27
2232 2283 6.662234 ACATGATGTTCCACTTTGATTCAGAT 59.338 34.615 0.00 0.00 0.00 2.90
2233 2284 6.505044 TGATGTTCCACTTTGATTCAGATG 57.495 37.500 0.00 0.00 0.00 2.90
2234 2285 6.240145 TGATGTTCCACTTTGATTCAGATGA 58.760 36.000 0.00 0.00 0.00 2.92
2235 2286 6.716173 TGATGTTCCACTTTGATTCAGATGAA 59.284 34.615 0.00 0.00 38.56 2.57
2236 2287 7.395206 TGATGTTCCACTTTGATTCAGATGAAT 59.605 33.333 7.77 7.77 46.54 2.57
2237 2288 8.812513 ATGTTCCACTTTGATTCAGATGAATA 57.187 30.769 8.01 0.00 44.14 1.75
2238 2289 8.044060 TGTTCCACTTTGATTCAGATGAATAC 57.956 34.615 8.01 3.75 44.14 1.89
2239 2290 7.665145 TGTTCCACTTTGATTCAGATGAATACA 59.335 33.333 8.01 5.98 44.14 2.29
2240 2291 7.854557 TCCACTTTGATTCAGATGAATACAG 57.145 36.000 8.01 7.15 44.14 2.74
2241 2292 7.623630 TCCACTTTGATTCAGATGAATACAGA 58.376 34.615 8.01 3.94 44.14 3.41
2242 2293 8.270030 TCCACTTTGATTCAGATGAATACAGAT 58.730 33.333 8.01 0.00 44.14 2.90
2243 2294 9.551734 CCACTTTGATTCAGATGAATACAGATA 57.448 33.333 8.01 0.10 44.14 1.98
2245 2296 9.775854 ACTTTGATTCAGATGAATACAGATAGG 57.224 33.333 8.01 0.00 44.14 2.57
2246 2297 9.775854 CTTTGATTCAGATGAATACAGATAGGT 57.224 33.333 8.01 0.00 44.14 3.08
2277 2328 5.887598 AGTATATTGGTGAAGAATTGCTGCA 59.112 36.000 0.00 0.00 0.00 4.41
2289 2340 1.985473 TTGCTGCAGAATCAGTTGGT 58.015 45.000 20.43 0.00 36.49 3.67
2297 2348 3.392882 CAGAATCAGTTGGTTTTTGGCC 58.607 45.455 0.00 0.00 0.00 5.36
2298 2349 2.035832 AGAATCAGTTGGTTTTTGGCCG 59.964 45.455 0.00 0.00 0.00 6.13
2299 2350 1.698506 ATCAGTTGGTTTTTGGCCGA 58.301 45.000 0.00 0.00 0.00 5.54
2300 2351 1.475403 TCAGTTGGTTTTTGGCCGAA 58.525 45.000 0.00 0.00 0.00 4.30
2301 2352 1.825474 TCAGTTGGTTTTTGGCCGAAA 59.175 42.857 14.56 14.56 0.00 3.46
2302 2353 2.159170 TCAGTTGGTTTTTGGCCGAAAG 60.159 45.455 17.68 5.38 0.00 2.62
2303 2354 2.104170 AGTTGGTTTTTGGCCGAAAGA 58.896 42.857 17.68 7.17 0.00 2.52
2304 2355 2.698274 AGTTGGTTTTTGGCCGAAAGAT 59.302 40.909 17.68 0.19 0.00 2.40
2305 2356 2.799978 GTTGGTTTTTGGCCGAAAGATG 59.200 45.455 17.68 0.00 0.00 2.90
2306 2357 1.270041 TGGTTTTTGGCCGAAAGATGC 60.270 47.619 17.68 9.78 0.00 3.91
2307 2358 1.000843 GGTTTTTGGCCGAAAGATGCT 59.999 47.619 17.68 0.00 0.00 3.79
2308 2359 2.328473 GTTTTTGGCCGAAAGATGCTC 58.672 47.619 17.68 3.42 0.00 4.26
2309 2360 1.909700 TTTTGGCCGAAAGATGCTCT 58.090 45.000 14.56 0.00 0.00 4.09
2310 2361 1.909700 TTTGGCCGAAAGATGCTCTT 58.090 45.000 1.75 0.00 38.59 2.85
2311 2362 1.453155 TTGGCCGAAAGATGCTCTTC 58.547 50.000 0.00 0.00 35.27 2.87
2312 2363 0.324614 TGGCCGAAAGATGCTCTTCA 59.675 50.000 0.00 0.00 35.27 3.02
2313 2364 1.271325 TGGCCGAAAGATGCTCTTCAA 60.271 47.619 0.00 0.00 35.27 2.69
2314 2365 2.019984 GGCCGAAAGATGCTCTTCAAT 58.980 47.619 0.00 0.00 35.27 2.57
2315 2366 2.223433 GGCCGAAAGATGCTCTTCAATG 60.223 50.000 0.00 0.00 35.27 2.82
2316 2367 2.421424 GCCGAAAGATGCTCTTCAATGT 59.579 45.455 0.00 0.00 35.27 2.71
2317 2368 3.623060 GCCGAAAGATGCTCTTCAATGTA 59.377 43.478 0.00 0.00 35.27 2.29
2318 2369 4.094887 GCCGAAAGATGCTCTTCAATGTAA 59.905 41.667 0.00 0.00 35.27 2.41
2319 2370 5.563842 CCGAAAGATGCTCTTCAATGTAAC 58.436 41.667 0.00 0.00 35.27 2.50
2320 2371 5.352569 CCGAAAGATGCTCTTCAATGTAACT 59.647 40.000 0.00 0.00 35.27 2.24
2321 2372 6.128172 CCGAAAGATGCTCTTCAATGTAACTT 60.128 38.462 0.00 0.00 35.27 2.66
2322 2373 6.740002 CGAAAGATGCTCTTCAATGTAACTTG 59.260 38.462 0.00 0.00 35.27 3.16
2323 2374 5.557891 AGATGCTCTTCAATGTAACTTGC 57.442 39.130 0.00 0.00 0.00 4.01
2324 2375 4.397417 AGATGCTCTTCAATGTAACTTGCC 59.603 41.667 0.00 0.00 0.00 4.52
2325 2376 3.754965 TGCTCTTCAATGTAACTTGCCT 58.245 40.909 0.00 0.00 0.00 4.75
2326 2377 3.503363 TGCTCTTCAATGTAACTTGCCTG 59.497 43.478 0.00 0.00 0.00 4.85
2327 2378 3.503748 GCTCTTCAATGTAACTTGCCTGT 59.496 43.478 0.00 0.00 0.00 4.00
2328 2379 4.695455 GCTCTTCAATGTAACTTGCCTGTA 59.305 41.667 0.00 0.00 0.00 2.74
2329 2380 5.181245 GCTCTTCAATGTAACTTGCCTGTAA 59.819 40.000 0.00 0.00 0.00 2.41
2330 2381 6.293955 GCTCTTCAATGTAACTTGCCTGTAAA 60.294 38.462 0.00 0.00 0.00 2.01
2331 2382 6.966021 TCTTCAATGTAACTTGCCTGTAAAC 58.034 36.000 0.00 0.00 0.00 2.01
2332 2383 5.351233 TCAATGTAACTTGCCTGTAAACG 57.649 39.130 0.00 0.00 0.00 3.60
2333 2384 4.817464 TCAATGTAACTTGCCTGTAAACGT 59.183 37.500 0.00 0.00 0.00 3.99
2334 2385 4.742438 ATGTAACTTGCCTGTAAACGTG 57.258 40.909 0.00 0.00 0.00 4.49
2335 2386 2.873472 TGTAACTTGCCTGTAAACGTGG 59.127 45.455 0.00 0.00 0.00 4.94
2336 2387 2.047002 AACTTGCCTGTAAACGTGGT 57.953 45.000 0.00 0.00 0.00 4.16
2337 2388 1.589803 ACTTGCCTGTAAACGTGGTC 58.410 50.000 0.00 0.00 0.00 4.02
2338 2389 0.872388 CTTGCCTGTAAACGTGGTCC 59.128 55.000 0.00 0.00 0.00 4.46
2339 2390 0.470766 TTGCCTGTAAACGTGGTCCT 59.529 50.000 0.00 0.00 0.00 3.85
2340 2391 0.470766 TGCCTGTAAACGTGGTCCTT 59.529 50.000 0.00 0.00 0.00 3.36
2341 2392 1.134037 TGCCTGTAAACGTGGTCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
2342 2393 1.951602 GCCTGTAAACGTGGTCCTTTT 59.048 47.619 0.00 0.00 0.00 2.27
2343 2394 2.031420 GCCTGTAAACGTGGTCCTTTTC 60.031 50.000 0.00 0.00 0.00 2.29
2344 2395 2.222445 CCTGTAAACGTGGTCCTTTTCG 59.778 50.000 0.00 0.00 0.00 3.46
2345 2396 2.211806 TGTAAACGTGGTCCTTTTCGG 58.788 47.619 0.00 0.00 0.00 4.30
2346 2397 1.069703 GTAAACGTGGTCCTTTTCGGC 60.070 52.381 0.00 0.00 0.00 5.54
2347 2398 0.464916 AAACGTGGTCCTTTTCGGCT 60.465 50.000 0.00 0.00 0.00 5.52
2348 2399 1.164041 AACGTGGTCCTTTTCGGCTG 61.164 55.000 0.00 0.00 0.00 4.85
2349 2400 2.325082 CGTGGTCCTTTTCGGCTGG 61.325 63.158 0.00 0.00 0.00 4.85
2350 2401 1.072505 GTGGTCCTTTTCGGCTGGA 59.927 57.895 0.00 0.00 0.00 3.86
2351 2402 1.072505 TGGTCCTTTTCGGCTGGAC 59.927 57.895 0.00 0.00 46.83 4.02
2352 2403 3.562635 GTCCTTTTCGGCTGGACG 58.437 61.111 0.00 0.00 40.44 4.79
2353 2404 1.005394 GTCCTTTTCGGCTGGACGA 60.005 57.895 0.00 0.00 40.44 4.20
2363 2414 4.659111 TCGGCTGGACGAAAGATATAAA 57.341 40.909 0.00 0.00 40.34 1.40
2364 2415 5.013568 TCGGCTGGACGAAAGATATAAAA 57.986 39.130 0.00 0.00 40.34 1.52
2365 2416 5.421277 TCGGCTGGACGAAAGATATAAAAA 58.579 37.500 0.00 0.00 40.34 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.525619 AGCGACTAGTGTCAAAAACGC 59.474 47.619 11.95 11.95 43.06 4.84
35 36 9.167311 AGGACGGAATGAATATGATATAAAAGC 57.833 33.333 0.00 0.00 0.00 3.51
45 46 8.721478 CAGGTATTTTAGGACGGAATGAATATG 58.279 37.037 0.00 0.00 0.00 1.78
49 50 6.057321 ACAGGTATTTTAGGACGGAATGAA 57.943 37.500 0.00 0.00 0.00 2.57
53 54 3.839490 TGGACAGGTATTTTAGGACGGAA 59.161 43.478 0.00 0.00 0.00 4.30
54 55 3.443052 TGGACAGGTATTTTAGGACGGA 58.557 45.455 0.00 0.00 0.00 4.69
160 162 2.586792 GGAGATGCGGCAGGTCTT 59.413 61.111 9.25 0.00 0.00 3.01
224 226 9.031537 TGCTAGTTTGATCCGGAGATAATATAA 57.968 33.333 11.34 0.00 30.90 0.98
331 333 3.220110 TCCTCGTGGTCCAGTCATATAC 58.780 50.000 2.99 0.00 34.23 1.47
332 334 3.588210 TCCTCGTGGTCCAGTCATATA 57.412 47.619 2.99 0.00 34.23 0.86
333 335 2.454336 TCCTCGTGGTCCAGTCATAT 57.546 50.000 2.99 0.00 34.23 1.78
394 398 7.332003 TGCGTTTTTACTGCTTTCATTATTG 57.668 32.000 0.00 0.00 0.00 1.90
406 417 3.120649 GGTCACTAGCTGCGTTTTTACTG 60.121 47.826 0.00 0.00 0.00 2.74
559 580 1.372087 GCGCCTGTCCTGAATTCTGG 61.372 60.000 22.04 22.04 36.43 3.86
565 586 4.020617 CTGGGCGCCTGTCCTGAA 62.021 66.667 28.56 1.03 41.01 3.02
640 664 3.292936 GCTGTTGCCTGCTGCTGT 61.293 61.111 0.00 0.00 42.00 4.40
644 668 1.654954 GGAGATGCTGTTGCCTGCTG 61.655 60.000 0.00 0.00 38.71 4.41
645 669 1.378250 GGAGATGCTGTTGCCTGCT 60.378 57.895 0.00 0.00 38.71 4.24
646 670 1.676635 TGGAGATGCTGTTGCCTGC 60.677 57.895 0.00 0.00 38.71 4.85
647 671 0.322277 AGTGGAGATGCTGTTGCCTG 60.322 55.000 0.00 0.00 38.71 4.85
648 672 0.403271 AAGTGGAGATGCTGTTGCCT 59.597 50.000 0.00 0.00 38.71 4.75
649 673 1.200948 GAAAGTGGAGATGCTGTTGCC 59.799 52.381 0.00 0.00 38.71 4.52
650 674 1.881973 TGAAAGTGGAGATGCTGTTGC 59.118 47.619 0.00 0.00 40.20 4.17
665 689 0.598065 CCTCCGGCTGGTTTTGAAAG 59.402 55.000 12.43 0.00 36.30 2.62
700 724 0.610174 TAGAGCACTTGAGGCACAGG 59.390 55.000 0.00 0.00 0.00 4.00
785 814 1.721257 CGTGACGCGCTAACGAGAAG 61.721 60.000 20.06 0.00 42.18 2.85
786 815 1.794785 CGTGACGCGCTAACGAGAA 60.795 57.895 20.06 0.00 42.18 2.87
901 930 1.045911 GTCTGGCTGGGTAGAGGAGG 61.046 65.000 0.00 0.00 0.00 4.30
1174 1219 5.709164 AGCTTGTTACTTGCAGATTCAGAAT 59.291 36.000 0.00 0.00 0.00 2.40
1219 1265 6.295123 CCATCCAAATCAGATCCAATCATTCC 60.295 42.308 0.00 0.00 0.00 3.01
1367 1413 1.814248 GCCTTTGAACACGAGGAACCT 60.814 52.381 0.00 0.00 32.11 3.50
1378 1424 0.179129 CATCCGCCATGCCTTTGAAC 60.179 55.000 0.00 0.00 0.00 3.18
1405 1451 2.435586 GCAGATCAGCACGGCAGT 60.436 61.111 5.05 0.00 0.00 4.40
1476 1526 5.773680 ACTGTTTCAGACTAGTAGGCAGTAA 59.226 40.000 5.63 0.00 35.18 2.24
1479 1529 4.792521 ACTGTTTCAGACTAGTAGGCAG 57.207 45.455 5.63 0.00 35.18 4.85
1480 1530 4.021368 GGAACTGTTTCAGACTAGTAGGCA 60.021 45.833 5.63 0.00 35.18 4.75
1481 1531 4.496360 GGAACTGTTTCAGACTAGTAGGC 58.504 47.826 0.00 0.00 35.18 3.93
1482 1532 4.217983 ACGGAACTGTTTCAGACTAGTAGG 59.782 45.833 0.00 0.00 35.18 3.18
1491 1541 3.243035 TGCATTTCACGGAACTGTTTCAG 60.243 43.478 0.00 0.00 37.52 3.02
1504 1554 6.584942 CAGCATATCATATTGGTGCATTTCAC 59.415 38.462 0.00 0.00 44.90 3.18
1513 1563 9.578576 AATCAAGTTACAGCATATCATATTGGT 57.421 29.630 0.00 0.00 0.00 3.67
1527 1577 5.400485 GTGCAAAAGCTGAATCAAGTTACAG 59.600 40.000 0.00 0.00 0.00 2.74
1528 1578 5.280945 GTGCAAAAGCTGAATCAAGTTACA 58.719 37.500 0.00 0.00 0.00 2.41
1536 1586 0.039256 TGCGGTGCAAAAGCTGAATC 60.039 50.000 10.07 0.00 34.76 2.52
1537 1587 0.388659 TTGCGGTGCAAAAGCTGAAT 59.611 45.000 1.03 0.00 45.96 2.57
1603 1653 6.662234 AGTGGAACATCATGTTTGAAGATCAT 59.338 34.615 4.04 0.00 41.28 2.45
1656 1707 8.627403 CAGCAATTCTTCACCAATATACTGAAT 58.373 33.333 0.00 0.00 0.00 2.57
1665 1716 3.159472 TCTGCAGCAATTCTTCACCAAT 58.841 40.909 9.47 0.00 0.00 3.16
1666 1717 2.585330 TCTGCAGCAATTCTTCACCAA 58.415 42.857 9.47 0.00 0.00 3.67
1667 1718 2.275134 TCTGCAGCAATTCTTCACCA 57.725 45.000 9.47 0.00 0.00 4.17
1668 1719 3.192001 TGATTCTGCAGCAATTCTTCACC 59.808 43.478 9.47 0.00 0.00 4.02
1669 1720 4.082895 ACTGATTCTGCAGCAATTCTTCAC 60.083 41.667 9.47 0.00 39.51 3.18
1670 1721 4.077108 ACTGATTCTGCAGCAATTCTTCA 58.923 39.130 9.47 0.00 39.51 3.02
1671 1722 4.698583 ACTGATTCTGCAGCAATTCTTC 57.301 40.909 9.47 0.00 39.51 2.87
1672 1723 4.321750 CCAACTGATTCTGCAGCAATTCTT 60.322 41.667 9.47 0.00 39.51 2.52
1673 1724 3.192844 CCAACTGATTCTGCAGCAATTCT 59.807 43.478 9.47 0.00 39.51 2.40
1674 1725 3.057033 ACCAACTGATTCTGCAGCAATTC 60.057 43.478 9.47 3.56 39.51 2.17
1675 1726 2.895404 ACCAACTGATTCTGCAGCAATT 59.105 40.909 9.47 0.00 39.51 2.32
1676 1727 2.522185 ACCAACTGATTCTGCAGCAAT 58.478 42.857 9.47 9.85 39.51 3.56
1677 1728 1.985473 ACCAACTGATTCTGCAGCAA 58.015 45.000 9.47 4.90 39.51 3.91
1678 1729 1.985473 AACCAACTGATTCTGCAGCA 58.015 45.000 9.47 0.00 39.51 4.41
1679 1730 3.375782 AAAACCAACTGATTCTGCAGC 57.624 42.857 9.47 0.00 39.51 5.25
1680 1731 4.053295 CCAAAAACCAACTGATTCTGCAG 58.947 43.478 7.63 7.63 41.63 4.41
1681 1732 3.740764 GCCAAAAACCAACTGATTCTGCA 60.741 43.478 0.00 0.00 0.00 4.41
1682 1733 2.802247 GCCAAAAACCAACTGATTCTGC 59.198 45.455 0.00 0.00 0.00 4.26
1683 1734 3.392882 GGCCAAAAACCAACTGATTCTG 58.607 45.455 0.00 0.00 0.00 3.02
1684 1735 2.035832 CGGCCAAAAACCAACTGATTCT 59.964 45.455 2.24 0.00 0.00 2.40
1685 1736 2.035321 TCGGCCAAAAACCAACTGATTC 59.965 45.455 2.24 0.00 0.00 2.52
1686 1737 2.035632 TCGGCCAAAAACCAACTGATT 58.964 42.857 2.24 0.00 0.00 2.57
1687 1738 1.698506 TCGGCCAAAAACCAACTGAT 58.301 45.000 2.24 0.00 0.00 2.90
1688 1739 1.475403 TTCGGCCAAAAACCAACTGA 58.525 45.000 2.24 0.00 0.00 3.41
1689 1740 2.159170 TCTTTCGGCCAAAAACCAACTG 60.159 45.455 2.24 0.00 0.00 3.16
1690 1741 2.104170 TCTTTCGGCCAAAAACCAACT 58.896 42.857 2.24 0.00 0.00 3.16
1691 1742 2.588027 TCTTTCGGCCAAAAACCAAC 57.412 45.000 2.24 0.00 0.00 3.77
1692 1743 2.804933 GCATCTTTCGGCCAAAAACCAA 60.805 45.455 2.24 0.00 0.00 3.67
1693 1744 1.270041 GCATCTTTCGGCCAAAAACCA 60.270 47.619 2.24 0.00 0.00 3.67
1694 1745 1.000843 AGCATCTTTCGGCCAAAAACC 59.999 47.619 2.24 0.00 0.00 3.27
1695 1746 2.328473 GAGCATCTTTCGGCCAAAAAC 58.672 47.619 2.24 0.00 0.00 2.43
1696 1747 2.723124 GAGCATCTTTCGGCCAAAAA 57.277 45.000 2.24 1.33 0.00 1.94
1709 1760 4.397417 AGGCAAGTTACATTGAAGAGCATC 59.603 41.667 0.00 0.00 31.55 3.91
1710 1761 4.157289 CAGGCAAGTTACATTGAAGAGCAT 59.843 41.667 0.00 0.00 31.55 3.79
1711 1762 3.503363 CAGGCAAGTTACATTGAAGAGCA 59.497 43.478 0.00 0.00 31.55 4.26
1712 1763 3.503748 ACAGGCAAGTTACATTGAAGAGC 59.496 43.478 0.00 0.00 31.55 4.09
1713 1764 6.801539 TTACAGGCAAGTTACATTGAAGAG 57.198 37.500 0.00 0.00 31.55 2.85
1714 1765 6.293190 CGTTTACAGGCAAGTTACATTGAAGA 60.293 38.462 0.00 0.00 31.55 2.87
1715 1766 5.851177 CGTTTACAGGCAAGTTACATTGAAG 59.149 40.000 0.00 0.00 31.55 3.02
1716 1767 5.297278 ACGTTTACAGGCAAGTTACATTGAA 59.703 36.000 0.00 0.00 31.55 2.69
1717 1768 4.817464 ACGTTTACAGGCAAGTTACATTGA 59.183 37.500 0.00 0.00 31.55 2.57
1718 1769 4.909305 CACGTTTACAGGCAAGTTACATTG 59.091 41.667 0.00 0.00 0.00 2.82
1719 1770 4.023536 CCACGTTTACAGGCAAGTTACATT 60.024 41.667 0.00 0.00 0.00 2.71
1720 1771 3.500680 CCACGTTTACAGGCAAGTTACAT 59.499 43.478 0.00 0.00 0.00 2.29
1721 1772 2.873472 CCACGTTTACAGGCAAGTTACA 59.127 45.455 0.00 0.00 0.00 2.41
1722 1773 2.874086 ACCACGTTTACAGGCAAGTTAC 59.126 45.455 0.00 0.00 0.00 2.50
1723 1774 3.132925 GACCACGTTTACAGGCAAGTTA 58.867 45.455 0.00 0.00 0.00 2.24
1724 1775 1.944709 GACCACGTTTACAGGCAAGTT 59.055 47.619 0.00 0.00 0.00 2.66
1725 1776 1.589803 GACCACGTTTACAGGCAAGT 58.410 50.000 0.00 0.00 0.00 3.16
1726 1777 0.872388 GGACCACGTTTACAGGCAAG 59.128 55.000 0.00 0.00 0.00 4.01
1727 1778 0.470766 AGGACCACGTTTACAGGCAA 59.529 50.000 0.00 0.00 0.00 4.52
1728 1779 0.470766 AAGGACCACGTTTACAGGCA 59.529 50.000 0.00 0.00 0.00 4.75
1729 1780 1.601166 AAAGGACCACGTTTACAGGC 58.399 50.000 0.00 0.00 33.29 4.85
1730 1781 2.222445 CGAAAAGGACCACGTTTACAGG 59.778 50.000 0.00 0.00 34.39 4.00
1731 1782 2.222445 CCGAAAAGGACCACGTTTACAG 59.778 50.000 0.00 0.00 45.00 2.74
1732 1783 2.211806 CCGAAAAGGACCACGTTTACA 58.788 47.619 0.00 0.00 45.00 2.41
1733 1784 1.069703 GCCGAAAAGGACCACGTTTAC 60.070 52.381 0.00 0.00 45.00 2.01
1734 1785 1.202675 AGCCGAAAAGGACCACGTTTA 60.203 47.619 0.00 0.00 45.00 2.01
1735 1786 0.464916 AGCCGAAAAGGACCACGTTT 60.465 50.000 0.00 0.00 45.00 3.60
1736 1787 1.147600 AGCCGAAAAGGACCACGTT 59.852 52.632 0.00 0.00 45.00 3.99
1737 1788 1.597027 CAGCCGAAAAGGACCACGT 60.597 57.895 0.00 0.00 45.00 4.49
1738 1789 2.325082 CCAGCCGAAAAGGACCACG 61.325 63.158 0.00 0.00 45.00 4.94
1739 1790 1.072505 TCCAGCCGAAAAGGACCAC 59.927 57.895 0.00 0.00 45.00 4.16
1740 1791 1.072505 GTCCAGCCGAAAAGGACCA 59.927 57.895 0.00 0.00 44.72 4.02
1741 1792 3.982829 GTCCAGCCGAAAAGGACC 58.017 61.111 0.00 0.00 44.72 4.46
1742 1793 0.601841 TTCGTCCAGCCGAAAAGGAC 60.602 55.000 0.00 0.00 46.48 3.85
1743 1794 1.749665 TTCGTCCAGCCGAAAAGGA 59.250 52.632 0.00 0.00 43.28 3.36
1744 1795 4.371975 TTCGTCCAGCCGAAAAGG 57.628 55.556 0.00 0.00 43.28 3.11
1748 1799 4.659111 TTATATCTTTCGTCCAGCCGAA 57.341 40.909 0.00 0.00 44.43 4.30
1749 1800 4.659111 TTTATATCTTTCGTCCAGCCGA 57.341 40.909 0.00 0.00 34.52 5.54
1750 1801 5.728351 TTTTTATATCTTTCGTCCAGCCG 57.272 39.130 0.00 0.00 0.00 5.52
2096 2147 5.570206 GCATATCATATTGGTGCATTTCACG 59.430 40.000 0.00 0.00 46.56 4.35
2097 2148 6.584942 CAGCATATCATATTGGTGCATTTCAC 59.415 38.462 0.00 0.00 44.90 3.18
2098 2149 6.265876 ACAGCATATCATATTGGTGCATTTCA 59.734 34.615 4.60 0.00 43.35 2.69
2099 2150 6.684686 ACAGCATATCATATTGGTGCATTTC 58.315 36.000 4.60 0.00 43.35 2.17
2100 2151 6.659745 ACAGCATATCATATTGGTGCATTT 57.340 33.333 4.60 0.00 43.35 2.32
2101 2152 7.449395 AGTTACAGCATATCATATTGGTGCATT 59.551 33.333 4.60 0.00 43.35 3.56
2102 2153 6.944290 AGTTACAGCATATCATATTGGTGCAT 59.056 34.615 4.60 0.00 43.35 3.96
2103 2154 6.298361 AGTTACAGCATATCATATTGGTGCA 58.702 36.000 4.60 0.00 43.35 4.57
2104 2155 6.808008 AGTTACAGCATATCATATTGGTGC 57.192 37.500 4.60 0.00 43.35 5.01
2105 2156 8.382030 TCAAGTTACAGCATATCATATTGGTG 57.618 34.615 3.37 3.37 44.68 4.17
2106 2157 9.578576 AATCAAGTTACAGCATATCATATTGGT 57.421 29.630 0.00 0.00 0.00 3.67
2120 2171 5.400485 GTGCAAAAGCTGAATCAAGTTACAG 59.600 40.000 0.00 0.00 0.00 2.74
2121 2172 5.280945 GTGCAAAAGCTGAATCAAGTTACA 58.719 37.500 0.00 0.00 0.00 2.41
2122 2173 4.681483 GGTGCAAAAGCTGAATCAAGTTAC 59.319 41.667 0.00 0.00 0.00 2.50
2123 2174 4.556501 CGGTGCAAAAGCTGAATCAAGTTA 60.557 41.667 0.00 0.00 0.00 2.24
2124 2175 3.721035 GGTGCAAAAGCTGAATCAAGTT 58.279 40.909 0.00 0.00 0.00 2.66
2125 2176 2.287788 CGGTGCAAAAGCTGAATCAAGT 60.288 45.455 0.00 0.00 0.00 3.16
2126 2177 2.322161 CGGTGCAAAAGCTGAATCAAG 58.678 47.619 0.00 0.00 0.00 3.02
2127 2178 1.602668 GCGGTGCAAAAGCTGAATCAA 60.603 47.619 0.00 0.00 0.00 2.57
2128 2179 0.039256 GCGGTGCAAAAGCTGAATCA 60.039 50.000 0.00 0.00 0.00 2.57
2129 2180 0.039256 TGCGGTGCAAAAGCTGAATC 60.039 50.000 10.07 0.00 34.76 2.52
2130 2181 0.388659 TTGCGGTGCAAAAGCTGAAT 59.611 45.000 1.03 0.00 45.96 2.57
2131 2182 1.812525 TTGCGGTGCAAAAGCTGAA 59.187 47.368 1.03 0.00 45.96 3.02
2132 2183 3.519202 TTGCGGTGCAAAAGCTGA 58.481 50.000 1.03 0.00 45.96 4.26
2146 2197 1.132640 GACCACACTCGCGAATTGC 59.867 57.895 11.33 0.00 41.47 3.56
2147 2198 0.439985 CAGACCACACTCGCGAATTG 59.560 55.000 11.33 13.12 0.00 2.32
2148 2199 0.317160 TCAGACCACACTCGCGAATT 59.683 50.000 11.33 0.00 0.00 2.17
2149 2200 0.317160 TTCAGACCACACTCGCGAAT 59.683 50.000 11.33 0.00 0.00 3.34
2150 2201 0.103390 TTTCAGACCACACTCGCGAA 59.897 50.000 11.33 0.00 0.00 4.70
2151 2202 0.596600 GTTTCAGACCACACTCGCGA 60.597 55.000 9.26 9.26 0.00 5.87
2152 2203 0.597637 AGTTTCAGACCACACTCGCG 60.598 55.000 0.00 0.00 0.00 5.87
2153 2204 1.140816 GAGTTTCAGACCACACTCGC 58.859 55.000 0.00 0.00 0.00 5.03
2154 2205 2.034685 TCAGAGTTTCAGACCACACTCG 59.965 50.000 0.00 0.00 40.59 4.18
2155 2206 3.735237 TCAGAGTTTCAGACCACACTC 57.265 47.619 0.00 0.00 36.66 3.51
2156 2207 4.384056 CATTCAGAGTTTCAGACCACACT 58.616 43.478 0.00 0.00 0.00 3.55
2157 2208 3.058639 GCATTCAGAGTTTCAGACCACAC 60.059 47.826 0.00 0.00 0.00 3.82
2158 2209 3.141398 GCATTCAGAGTTTCAGACCACA 58.859 45.455 0.00 0.00 0.00 4.17
2159 2210 2.158449 CGCATTCAGAGTTTCAGACCAC 59.842 50.000 0.00 0.00 0.00 4.16
2160 2211 2.224281 ACGCATTCAGAGTTTCAGACCA 60.224 45.455 0.00 0.00 0.00 4.02
2161 2212 2.417719 ACGCATTCAGAGTTTCAGACC 58.582 47.619 0.00 0.00 0.00 3.85
2162 2213 3.494626 TCAACGCATTCAGAGTTTCAGAC 59.505 43.478 0.00 0.00 38.23 3.51
2163 2214 3.727726 TCAACGCATTCAGAGTTTCAGA 58.272 40.909 0.00 0.00 38.23 3.27
2164 2215 4.472691 TTCAACGCATTCAGAGTTTCAG 57.527 40.909 0.00 0.00 38.23 3.02
2165 2216 4.320421 CCATTCAACGCATTCAGAGTTTCA 60.320 41.667 0.00 0.00 38.23 2.69
2166 2217 4.161333 CCATTCAACGCATTCAGAGTTTC 58.839 43.478 0.00 0.00 38.23 2.78
2167 2218 3.569701 ACCATTCAACGCATTCAGAGTTT 59.430 39.130 0.00 0.00 38.23 2.66
2168 2219 3.058016 CACCATTCAACGCATTCAGAGTT 60.058 43.478 0.00 0.00 41.14 3.01
2169 2220 2.485426 CACCATTCAACGCATTCAGAGT 59.515 45.455 0.00 0.00 0.00 3.24
2170 2221 2.485426 ACACCATTCAACGCATTCAGAG 59.515 45.455 0.00 0.00 0.00 3.35
2171 2222 2.226200 CACACCATTCAACGCATTCAGA 59.774 45.455 0.00 0.00 0.00 3.27
2172 2223 2.587956 CACACCATTCAACGCATTCAG 58.412 47.619 0.00 0.00 0.00 3.02
2173 2224 1.269174 CCACACCATTCAACGCATTCA 59.731 47.619 0.00 0.00 0.00 2.57
2174 2225 1.539388 TCCACACCATTCAACGCATTC 59.461 47.619 0.00 0.00 0.00 2.67
2175 2226 1.614996 TCCACACCATTCAACGCATT 58.385 45.000 0.00 0.00 0.00 3.56
2176 2227 1.614996 TTCCACACCATTCAACGCAT 58.385 45.000 0.00 0.00 0.00 4.73
2177 2228 1.393603 TTTCCACACCATTCAACGCA 58.606 45.000 0.00 0.00 0.00 5.24
2178 2229 2.030363 TCATTTCCACACCATTCAACGC 60.030 45.455 0.00 0.00 0.00 4.84
2179 2230 3.913548 TCATTTCCACACCATTCAACG 57.086 42.857 0.00 0.00 0.00 4.10
2180 2231 5.649782 AGATCATTTCCACACCATTCAAC 57.350 39.130 0.00 0.00 0.00 3.18
2181 2232 5.774184 TGAAGATCATTTCCACACCATTCAA 59.226 36.000 0.00 0.00 0.00 2.69
2182 2233 5.323581 TGAAGATCATTTCCACACCATTCA 58.676 37.500 0.00 0.00 0.00 2.57
2183 2234 5.902613 TGAAGATCATTTCCACACCATTC 57.097 39.130 0.00 0.00 0.00 2.67
2184 2235 6.041865 TGTTTGAAGATCATTTCCACACCATT 59.958 34.615 0.00 0.00 0.00 3.16
2185 2236 5.539574 TGTTTGAAGATCATTTCCACACCAT 59.460 36.000 0.00 0.00 0.00 3.55
2186 2237 4.892345 TGTTTGAAGATCATTTCCACACCA 59.108 37.500 0.00 0.00 0.00 4.17
2187 2238 5.452078 TGTTTGAAGATCATTTCCACACC 57.548 39.130 0.00 0.00 0.00 4.16
2188 2239 6.680810 TCATGTTTGAAGATCATTTCCACAC 58.319 36.000 0.00 0.00 0.00 3.82
2189 2240 6.897706 TCATGTTTGAAGATCATTTCCACA 57.102 33.333 0.00 0.00 0.00 4.17
2190 2241 7.318141 ACATCATGTTTGAAGATCATTTCCAC 58.682 34.615 0.00 0.00 34.96 4.02
2191 2242 7.470935 ACATCATGTTTGAAGATCATTTCCA 57.529 32.000 0.00 0.00 34.96 3.53
2192 2243 7.490402 GGAACATCATGTTTGAAGATCATTTCC 59.510 37.037 4.04 0.00 41.28 3.13
2193 2244 8.030692 TGGAACATCATGTTTGAAGATCATTTC 58.969 33.333 4.04 0.00 41.28 2.17
2194 2245 7.816031 GTGGAACATCATGTTTGAAGATCATTT 59.184 33.333 4.04 0.00 41.28 2.32
2195 2246 7.177921 AGTGGAACATCATGTTTGAAGATCATT 59.822 33.333 4.04 0.00 41.28 2.57
2196 2247 6.662234 AGTGGAACATCATGTTTGAAGATCAT 59.338 34.615 4.04 0.00 41.28 2.45
2197 2248 6.005823 AGTGGAACATCATGTTTGAAGATCA 58.994 36.000 4.04 0.00 41.28 2.92
2198 2249 6.506500 AGTGGAACATCATGTTTGAAGATC 57.493 37.500 4.04 0.00 41.28 2.75
2199 2250 6.906157 AAGTGGAACATCATGTTTGAAGAT 57.094 33.333 4.04 0.00 41.28 2.40
2200 2251 6.320926 TCAAAGTGGAACATCATGTTTGAAGA 59.679 34.615 4.04 0.00 41.28 2.87
2201 2252 6.506147 TCAAAGTGGAACATCATGTTTGAAG 58.494 36.000 4.04 0.00 41.28 3.02
2202 2253 6.462552 TCAAAGTGGAACATCATGTTTGAA 57.537 33.333 4.04 0.00 41.28 2.69
2203 2254 6.653526 ATCAAAGTGGAACATCATGTTTGA 57.346 33.333 4.04 3.66 41.28 2.69
2204 2255 6.924612 TGAATCAAAGTGGAACATCATGTTTG 59.075 34.615 4.04 0.00 41.28 2.93
2205 2256 7.014518 TCTGAATCAAAGTGGAACATCATGTTT 59.985 33.333 4.04 0.00 41.28 2.83
2206 2257 6.491062 TCTGAATCAAAGTGGAACATCATGTT 59.509 34.615 1.52 1.52 44.37 2.71
2207 2258 6.005823 TCTGAATCAAAGTGGAACATCATGT 58.994 36.000 0.00 0.00 44.52 3.21
2208 2259 6.505044 TCTGAATCAAAGTGGAACATCATG 57.495 37.500 0.00 0.00 44.52 3.07
2209 2260 6.888088 TCATCTGAATCAAAGTGGAACATCAT 59.112 34.615 0.00 0.00 44.52 2.45
2210 2261 6.240145 TCATCTGAATCAAAGTGGAACATCA 58.760 36.000 0.00 0.00 44.52 3.07
2211 2262 6.748333 TCATCTGAATCAAAGTGGAACATC 57.252 37.500 0.00 0.00 44.52 3.06
2212 2263 7.713734 ATTCATCTGAATCAAAGTGGAACAT 57.286 32.000 0.00 0.00 39.95 2.71
2213 2264 7.665145 TGTATTCATCTGAATCAAAGTGGAACA 59.335 33.333 8.63 2.77 43.17 3.18
2214 2265 8.044060 TGTATTCATCTGAATCAAAGTGGAAC 57.956 34.615 8.63 0.42 43.17 3.62
2215 2266 8.102676 TCTGTATTCATCTGAATCAAAGTGGAA 58.897 33.333 8.63 0.00 43.17 3.53
2216 2267 7.623630 TCTGTATTCATCTGAATCAAAGTGGA 58.376 34.615 8.63 0.29 43.17 4.02
2217 2268 7.854557 TCTGTATTCATCTGAATCAAAGTGG 57.145 36.000 8.63 0.00 43.17 4.00
2219 2270 9.775854 CCTATCTGTATTCATCTGAATCAAAGT 57.224 33.333 8.63 0.00 43.17 2.66
2220 2271 9.775854 ACCTATCTGTATTCATCTGAATCAAAG 57.224 33.333 8.63 6.05 43.17 2.77
2248 2299 9.193806 AGCAATTCTTCACCAATATACTGAATT 57.806 29.630 0.00 0.00 34.51 2.17
2249 2300 8.627403 CAGCAATTCTTCACCAATATACTGAAT 58.373 33.333 0.00 0.00 0.00 2.57
2250 2301 7.415541 GCAGCAATTCTTCACCAATATACTGAA 60.416 37.037 0.00 0.00 0.00 3.02
2251 2302 6.038603 GCAGCAATTCTTCACCAATATACTGA 59.961 38.462 0.00 0.00 0.00 3.41
2252 2303 6.183360 TGCAGCAATTCTTCACCAATATACTG 60.183 38.462 0.00 0.00 0.00 2.74
2253 2304 5.887598 TGCAGCAATTCTTCACCAATATACT 59.112 36.000 0.00 0.00 0.00 2.12
2254 2305 6.038603 TCTGCAGCAATTCTTCACCAATATAC 59.961 38.462 9.47 0.00 0.00 1.47
2255 2306 6.121590 TCTGCAGCAATTCTTCACCAATATA 58.878 36.000 9.47 0.00 0.00 0.86
2256 2307 4.951715 TCTGCAGCAATTCTTCACCAATAT 59.048 37.500 9.47 0.00 0.00 1.28
2277 2328 2.035832 CGGCCAAAAACCAACTGATTCT 59.964 45.455 2.24 0.00 0.00 2.40
2289 2340 2.723124 GAGCATCTTTCGGCCAAAAA 57.277 45.000 2.24 1.33 0.00 1.94
2302 2353 4.397417 AGGCAAGTTACATTGAAGAGCATC 59.603 41.667 0.00 0.00 31.55 3.91
2303 2354 4.157289 CAGGCAAGTTACATTGAAGAGCAT 59.843 41.667 0.00 0.00 31.55 3.79
2304 2355 3.503363 CAGGCAAGTTACATTGAAGAGCA 59.497 43.478 0.00 0.00 31.55 4.26
2305 2356 3.503748 ACAGGCAAGTTACATTGAAGAGC 59.496 43.478 0.00 0.00 31.55 4.09
2306 2357 6.801539 TTACAGGCAAGTTACATTGAAGAG 57.198 37.500 0.00 0.00 31.55 2.85
2307 2358 6.293190 CGTTTACAGGCAAGTTACATTGAAGA 60.293 38.462 0.00 0.00 31.55 2.87
2308 2359 5.851177 CGTTTACAGGCAAGTTACATTGAAG 59.149 40.000 0.00 0.00 31.55 3.02
2309 2360 5.297278 ACGTTTACAGGCAAGTTACATTGAA 59.703 36.000 0.00 0.00 31.55 2.69
2310 2361 4.817464 ACGTTTACAGGCAAGTTACATTGA 59.183 37.500 0.00 0.00 31.55 2.57
2311 2362 4.909305 CACGTTTACAGGCAAGTTACATTG 59.091 41.667 0.00 0.00 0.00 2.82
2312 2363 4.023536 CCACGTTTACAGGCAAGTTACATT 60.024 41.667 0.00 0.00 0.00 2.71
2313 2364 3.500680 CCACGTTTACAGGCAAGTTACAT 59.499 43.478 0.00 0.00 0.00 2.29
2314 2365 2.873472 CCACGTTTACAGGCAAGTTACA 59.127 45.455 0.00 0.00 0.00 2.41
2315 2366 2.874086 ACCACGTTTACAGGCAAGTTAC 59.126 45.455 0.00 0.00 0.00 2.50
2316 2367 3.132925 GACCACGTTTACAGGCAAGTTA 58.867 45.455 0.00 0.00 0.00 2.24
2317 2368 1.944709 GACCACGTTTACAGGCAAGTT 59.055 47.619 0.00 0.00 0.00 2.66
2318 2369 1.589803 GACCACGTTTACAGGCAAGT 58.410 50.000 0.00 0.00 0.00 3.16
2319 2370 0.872388 GGACCACGTTTACAGGCAAG 59.128 55.000 0.00 0.00 0.00 4.01
2320 2371 0.470766 AGGACCACGTTTACAGGCAA 59.529 50.000 0.00 0.00 0.00 4.52
2321 2372 0.470766 AAGGACCACGTTTACAGGCA 59.529 50.000 0.00 0.00 0.00 4.75
2322 2373 1.601166 AAAGGACCACGTTTACAGGC 58.399 50.000 0.00 0.00 33.29 4.85
2323 2374 2.222445 CGAAAAGGACCACGTTTACAGG 59.778 50.000 0.00 0.00 34.39 4.00
2324 2375 2.222445 CCGAAAAGGACCACGTTTACAG 59.778 50.000 0.00 0.00 45.00 2.74
2325 2376 2.211806 CCGAAAAGGACCACGTTTACA 58.788 47.619 0.00 0.00 45.00 2.41
2326 2377 1.069703 GCCGAAAAGGACCACGTTTAC 60.070 52.381 0.00 0.00 45.00 2.01
2327 2378 1.202675 AGCCGAAAAGGACCACGTTTA 60.203 47.619 0.00 0.00 45.00 2.01
2328 2379 0.464916 AGCCGAAAAGGACCACGTTT 60.465 50.000 0.00 0.00 45.00 3.60
2329 2380 1.147600 AGCCGAAAAGGACCACGTT 59.852 52.632 0.00 0.00 45.00 3.99
2330 2381 1.597027 CAGCCGAAAAGGACCACGT 60.597 57.895 0.00 0.00 45.00 4.49
2331 2382 2.325082 CCAGCCGAAAAGGACCACG 61.325 63.158 0.00 0.00 45.00 4.94
2332 2383 1.072505 TCCAGCCGAAAAGGACCAC 59.927 57.895 0.00 0.00 45.00 4.16
2333 2384 1.072505 GTCCAGCCGAAAAGGACCA 59.927 57.895 0.00 0.00 44.72 4.02
2334 2385 3.982829 GTCCAGCCGAAAAGGACC 58.017 61.111 0.00 0.00 44.72 4.46
2335 2386 0.601841 TTCGTCCAGCCGAAAAGGAC 60.602 55.000 0.00 0.00 46.48 3.85
2336 2387 1.749665 TTCGTCCAGCCGAAAAGGA 59.250 52.632 0.00 0.00 43.28 3.36
2337 2388 4.371975 TTCGTCCAGCCGAAAAGG 57.628 55.556 0.00 0.00 43.28 3.11
2341 2392 4.659111 TTATATCTTTCGTCCAGCCGAA 57.341 40.909 0.00 0.00 44.43 4.30
2342 2393 4.659111 TTTATATCTTTCGTCCAGCCGA 57.341 40.909 0.00 0.00 34.52 5.54
2343 2394 5.728351 TTTTTATATCTTTCGTCCAGCCG 57.272 39.130 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.